Query 028414
Match_columns 209
No_of_seqs 167 out of 1596
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:09:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06966 DUF1295: Protein of u 100.0 1.3E-45 2.9E-50 313.1 19.2 170 2-171 60-235 (235)
2 COG3752 Steroid 5-alpha reduct 100.0 1.1E-45 2.3E-50 309.2 16.7 176 1-183 88-271 (272)
3 KOG4650 Predicted steroid redu 100.0 5.6E-40 1.2E-44 274.4 14.0 167 4-176 117-294 (311)
4 PF01222 ERG4_ERG24: Ergostero 99.9 1.1E-23 2.3E-28 192.6 8.6 157 11-178 259-431 (432)
5 COG2020 STE14 Putative protein 99.9 1.4E-20 3E-25 154.9 15.7 117 54-179 67-186 (187)
6 KOG1435 Sterol reductase/lamin 99.8 3.7E-22 8E-27 178.7 2.7 157 11-178 256-427 (428)
7 PF04191 PEMT: Phospholipid me 99.7 1.7E-16 3.8E-21 118.1 10.7 100 56-164 2-106 (106)
8 KOG2628 Farnesyl cysteine-carb 99.7 1.2E-16 2.5E-21 130.1 8.9 111 59-179 85-201 (201)
9 PF04140 ICMT: Isoprenylcystei 99.5 9.2E-14 2E-18 102.4 9.7 88 62-156 3-94 (94)
10 KOG1638 Steroid reductase [Lip 99.5 3.5E-13 7.7E-18 113.1 11.4 109 56-178 148-256 (257)
11 PLN02392 probable steroid redu 99.5 3.1E-13 6.6E-18 116.0 10.8 110 55-178 150-259 (260)
12 PF02544 Steroid_dh: 3-oxo-5-a 99.4 2.1E-12 4.5E-17 102.7 10.3 110 55-178 40-149 (150)
13 PLN02560 enoyl-CoA reductase 99.3 8.5E-11 1.8E-15 103.6 14.3 115 55-177 192-307 (308)
14 PLN03164 3-oxo-5-alpha-steroid 99.2 1.5E-10 3.3E-15 101.8 10.6 112 55-178 209-322 (323)
15 COG1755 Uncharacterized protei 99.2 7E-10 1.5E-14 88.4 12.1 98 52-158 66-169 (172)
16 KOG1640 Predicted steroid redu 98.1 2.4E-05 5.2E-10 67.8 9.4 109 56-178 193-303 (304)
17 KOG1639 Steroid reductase requ 97.9 6.6E-05 1.4E-09 64.0 8.1 106 57-178 188-297 (297)
18 PF07298 NnrU: NnrU protein; 97.6 0.0012 2.5E-08 54.7 11.3 94 54-172 67-160 (191)
19 PLN02797 phosphatidyl-N-dimeth 93.4 0.32 6.9E-06 38.8 6.5 62 57-119 66-132 (164)
20 KOG4142 Phospholipid methyltra 90.4 4.2 9.1E-05 33.0 9.7 64 56-119 97-165 (208)
21 COG4094 Predicted membrane pro 88.5 0.39 8.4E-06 40.0 2.6 77 91-178 98-174 (219)
22 COG3162 Predicted membrane pro 60.7 67 0.0015 23.9 8.3 64 10-74 12-81 (102)
23 TIGR00026 hi_GC_TIGR00026 deaz 42.7 19 0.00041 27.1 2.0 22 154-178 89-110 (113)
24 KOG1582 UDP-galactose transpor 30.1 72 0.0016 28.4 3.8 42 37-78 142-183 (367)
25 COG3462 Predicted membrane pro 29.7 1.7E+02 0.0037 22.2 5.2 12 148-159 88-99 (117)
26 PF05653 Mg_trans_NIPA: Magnes 28.6 86 0.0019 27.6 4.2 56 57-119 5-61 (300)
27 PF04075 DUF385: Domain of unk 28.2 53 0.0012 25.3 2.5 21 154-177 107-127 (132)
28 PF04341 DUF485: Protein of un 26.8 2.4E+02 0.0052 20.1 8.2 67 9-76 3-75 (91)
29 PF14147 Spore_YhaL: Sporulati 26.8 1.5E+02 0.0033 19.4 3.9 12 147-158 22-33 (52)
30 PF09124 Endonuc-dimeris: T4 r 23.3 64 0.0014 21.3 1.8 13 102-114 2-14 (54)
31 PF05975 EcsB: Bacterial ABC t 23.1 2.1E+02 0.0045 25.9 5.7 66 99-180 275-341 (386)
32 KOG3088 Secretory carrier memb 20.4 5.1E+02 0.011 23.1 7.2 25 13-37 188-216 (313)
No 1
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=100.00 E-value=1.3e-45 Score=313.10 Aligned_cols=170 Identities=49% Similarity=1.047 Sum_probs=155.0
Q ss_pred ccccCcCCCccHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 028414 2 ARILNWGEDRRFDEMRSNLG------KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIAD 75 (209)
Q Consensus 2 ~r~~~~geD~R~~~~r~~~~------~~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~G~~l~~~ad 75 (209)
.|..++|||+||+++|++++ .++.+|++|+++++++++|+++++..+.+++++..+++|++++++|+++|++||
T Consensus 60 ~R~~~~~eD~R~~~~r~~~~~~~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~E~~AD 139 (235)
T PF06966_consen 60 RRNLGWGEDWRYDDLRKKWGEWFWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWLDILGIALFLIGFLLETVAD 139 (235)
T ss_pred HHhCCCCCchhHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 58888899999999999974 466789999999999999999887655556789999999999999999999999
Q ss_pred HHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHhChHHHHHHHH
Q 028414 76 QQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESAD 155 (209)
Q Consensus 76 ~ql~~f~~~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~i~~~~ll~~~s~i~~eE~~l~ 155 (209)
.||.+||++|+|++++|++|+|++||||||+||+++|+|+++++.+...+..++++++|++++++++++++++..|+++.
T Consensus 140 ~Q~~~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~ 219 (235)
T PF06966_consen 140 QQKYRFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMA 219 (235)
T ss_pred HHHHHHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999998876544446788999998888889999999999999
Q ss_pred hHcCCcHHHHHHHhhC
Q 028414 156 KKFGNMPAYRLYKKTT 171 (209)
Q Consensus 156 ~kyG~~~~Y~~Y~~~t 171 (209)
+|||++|+|+||+|+|
T Consensus 220 ~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 220 KKYGDRPAYQEYQRRT 235 (235)
T ss_pred HhcCCCHhHHHHHhcC
Confidence 9999999999999997
No 2
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=100.00 E-value=1.1e-45 Score=309.17 Aligned_cols=176 Identities=34% Similarity=0.710 Sum_probs=155.5
Q ss_pred CccccCcCCCccHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 028414 1 MARILNWGEDRRFDEMRSNLGK-------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAI 73 (209)
Q Consensus 1 ~~r~~~~geD~R~~~~r~~~~~-------~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~G~~l~~~ 73 (209)
+.|..++|||+||.++|+++|+ ++.++..|+++.+++++|+++++.. .+.+++++|++|++++++|+++|.+
T Consensus 88 ~rR~~~~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~-~~~~~~~~d~~g~~iwivg~~fE~l 166 (272)
T COG3752 88 YRRTRGKGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALN-GPREFGWWDVIGLAIWIVGIVFEAL 166 (272)
T ss_pred HHhhcCCCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 3578888999999999998874 5678899999999999999998755 3457899999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHhChH-HHHH
Q 028414 74 ADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIP-LLEE 152 (209)
Q Consensus 74 ad~ql~~f~~~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~i~~~~ll~~~s~i~-~eE~ 152 (209)
+|.|+..|+++|+|+++++++|+||++||||||||.++|+|+++++++-. ...|++.+|++|+.++.++||++ .||+
T Consensus 167 gD~QL~~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~--~~~W~~~sPllmt~LL~~vSGvp~l~ek 244 (272)
T COG3752 167 GDAQLWVFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEW--LLLWAVASPLLMTWLLVHVSGVPPLEEK 244 (272)
T ss_pred hHHHHHHHHhChhhccccccccceecccCcchHHHHHHHHHHHHHHHhhh--hHhhhcccHHHHHHHHHHhcCCChHHHH
Confidence 99999999999999999999999999999999999999999999987522 22345689999999999999998 6666
Q ss_pred HHHhHcCCcHHHHHHHhhCCCcccCCCCCCC
Q 028414 153 SADKKFGNMPAYRLYKKTTSPLIPLPPVVYG 183 (209)
Q Consensus 153 ~l~~kyG~~~~Y~~Y~~~t~~~iP~~~~~~~ 183 (209)
++++| |+|++|++||++|+|+++++..
T Consensus 245 m~k~r----~~fr~Yq~rt~~F~P~~~k~~~ 271 (272)
T COG3752 245 MLKSR----PGFREYQRRTNAFFPRPPKKAL 271 (272)
T ss_pred Hhccc----HhHHHHHHHhcccCCCCCcccC
Confidence 66555 8999999999999999998753
No 3
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=100.00 E-value=5.6e-40 Score=274.42 Aligned_cols=167 Identities=65% Similarity=1.238 Sum_probs=146.1
Q ss_pred ccCcC-CCccHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 028414 4 ILNWG-EDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQ 76 (209)
Q Consensus 4 ~~~~g-eD~R~~~~r~~~~~------~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~G~~l~~~ad~ 76 (209)
+++.| ||+||+++|++.|| ++.+|++|+++++.+++|+++++++..+..++++|++|..++++|+++|..||+
T Consensus 117 ~~~wG~ED~Rf~d~R~~~gK~~~~~~~f~~~ifQ~v~l~~v~lPlyiv~~~d~~r~f~~wD~I~~~m~~~gfvie~~ADq 196 (311)
T KOG4650|consen 117 ILQWGAEDRRFDDVRQNIGKWIYLFHLFYFWIFQAVWLWTVSLPLYIVNASDGGRAFGPWDVIGWTMWVFGFVIEALADQ 196 (311)
T ss_pred hhhcCchhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcchheeeecCCccccChHHHHHHHHHHHHHHHHHHhhh
Confidence 67888 99999999999998 677899999999999999999988765446899999999999999999999999
Q ss_pred HHHhcC---CCCCCCCc-ccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHhChHHHHH
Q 028414 77 QKLSFK---NSPENRGK-WCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEE 152 (209)
Q Consensus 77 ql~~f~---~~~~~~~~-lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~i~~~~ll~~~s~i~~eE~ 152 (209)
|+.+|+ .++++.|| .|++|+|||||||||+||++.|||+++++.++..|..|..+.++++.++++.+ +...|+
T Consensus 197 Q~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~~~egl~wtvi~~lv~~~~l~~~---t~lie~ 273 (311)
T KOG4650|consen 197 QKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAPVLEGLEWTVIAGLVFLTLLLLF---TSLIEL 273 (311)
T ss_pred hhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH---Hhhhhh
Confidence 999998 45567777 99999999999999999999999999999888777667666666665544443 466777
Q ss_pred HHHhHcCCcHHHHHHHhhCCCccc
Q 028414 153 SADKKFGNMPAYRLYKKTTSPLIP 176 (209)
Q Consensus 153 ~l~~kyG~~~~Y~~Y~~~t~~~iP 176 (209)
.+.+++ +.|+.||++|+++||
T Consensus 274 ~~v~~~---~aYR~Yqktts~~ip 294 (311)
T KOG4650|consen 274 LEVEKY---PAYRVYQKTTSRFIP 294 (311)
T ss_pred hhhhhh---HHHHHHHhccccccc
Confidence 777888 899999999999999
No 4
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.89 E-value=1.1e-23 Score=192.65 Aligned_cols=157 Identities=24% Similarity=0.304 Sum_probs=125.1
Q ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHH-HHHHH-HHHHHHHHHHHHHHHHHHhcCCCCC--
Q 028414 11 RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV-DVIGW-IMWSVGVSIEAIADQQKLSFKNSPE-- 86 (209)
Q Consensus 11 ~R~~~~r~~~~~~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~~~~~-~~~g~-~l~~~G~~l~~~ad~ql~~f~~~~~-- 86 (209)
..+|...|++|.++.++.+-.+..+..+...|++.+. .++++. ..+++ ++.++|+.+...||.||..||++|+
T Consensus 259 ~t~Di~~d~fGfml~~g~l~~vPf~Yt~~~~yl~~~p---~~l~~~~~~~~i~~l~~~gy~i~r~sn~QK~~FR~~p~~p 335 (432)
T PF01222_consen 259 TTMDITHDGFGFMLCFGDLVWVPFTYTLQARYLVDHP---VELSWPTYAAAILALGLVGYYIFRGSNSQKNRFRRNPKDP 335 (432)
T ss_pred eeeeeeEcCccceeehhhHhhhhHhhhcceeEEEeCC---ccCCcHHHHHHHHHHHHHHHHHHHHhchhHHHhcCCCCCC
Confidence 6889999999988888888788877777777777553 245555 34433 6789999999999999999997652
Q ss_pred -----------CCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHhChHHHHHHHH
Q 028414 87 -----------NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESAD 155 (209)
Q Consensus 87 -----------~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~i~~~~ll~~~s~i~~eE~~l~ 155 (209)
+..+|+++|.|+++|||||+||+++.+++++.+. .. .......++++++++++ |..++|++|+
T Consensus 336 ~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~g-f~---~~~pyfy~~~~~~lL~h--R~~RD~~rC~ 409 (432)
T PF01222_consen 336 KVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCG-FS---SILPYFYPIFFTILLIH--RARRDEERCR 409 (432)
T ss_pred cccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHh-cC---ccHHHHHHHHHHHHHhh--hHHHHHHHHH
Confidence 2347999999999999999999999988887642 21 24456677776665554 7899999999
Q ss_pred hHcCCcHHHHHHHhhCC-CcccCC
Q 028414 156 KKFGNMPAYRLYKKTTS-PLIPLP 178 (209)
Q Consensus 156 ~kyG~~~~Y~~Y~~~t~-~~iP~~ 178 (209)
+||| ++|++|+++|| ++||.+
T Consensus 410 ~KYG--~~W~~Yc~~Vpy~~iP~i 431 (432)
T PF01222_consen 410 KKYG--KDWDEYCKRVPYRIIPGI 431 (432)
T ss_pred HhhC--HHHHHHHHhCCEEEeCCc
Confidence 9999 99999999999 899975
No 5
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.4e-20 Score=154.85 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=89.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHH
Q 028414 54 QAVDVIGWIMWSVGVSIEAIADQQKLSFKN---SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 130 (209)
Q Consensus 54 ~~~~~~g~~l~~~G~~l~~~ad~ql~~f~~---~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~ 130 (209)
.+...+|+++..+|..+...+..++..... ++++.++++|+|+|+++|||+|+|.+++.+|..+...+ ++.
T Consensus 67 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~------~~~ 140 (187)
T COG2020 67 SWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGS------LWA 140 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHh------HHH
Confidence 456788899999999999999999865432 22456789999999999999999999999997754322 333
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCCCcccCCC
Q 028414 131 ILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 179 (209)
Q Consensus 131 ~~~~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~~~ 179 (209)
.++.+.....+ ..-++..||+.+.++|| ++|+||+++||+++|++.
T Consensus 141 l~~~~~~~~~~-~~~~i~~EEr~L~~~fg--~~Y~~Y~~rV~r~iP~~~ 186 (187)
T COG2020 141 LLIFVVLVALL-FLFRIREEERYLRAEFG--DEYREYRKRVPRLIPPLV 186 (187)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHHhh--HHHHHHHHhCCccCCCCC
Confidence 33222222222 22368999999999999 999999999999999864
No 6
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.84 E-value=3.7e-22 Score=178.71 Aligned_cols=157 Identities=22% Similarity=0.336 Sum_probs=124.4
Q ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCC----
Q 028414 11 RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGW-IMWSVGVSIEAIADQQKLSFKNSP---- 85 (209)
Q Consensus 11 ~R~~~~r~~~~~~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~-~l~~~G~~l~~~ad~ql~~f~~~~---- 85 (209)
..+|.-++++|.++.++.+-.+.....+--.|+..+. .++++....++ ++.++|+.+...||.||..||+++
T Consensus 256 ~TmDi~hd~FGfmL~fgd~v~vP~~Yt~~~~yL~~hp---v~l~~~~a~~i~~l~l~gyyifr~an~QK~~FRkn~~~~~ 332 (428)
T KOG1435|consen 256 TTMDIAHDGFGFMLIFGDLVWVPFTYTLQALYLVSHP---VELGWPMAVGILVLLLLGYYIFRGANAQKNEFRKNPGDPK 332 (428)
T ss_pred chhhhhccCcceeeeehhhcccceeeecceeeEEECc---cccchHHHHHHHHHHHhheeEeeccchhHHHHhcCCCCCc
Confidence 7888999999998888888887776665556666552 25676655555 678899999999999999999873
Q ss_pred ---------CCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHhChHHHHHHHHh
Q 028414 86 ---------ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADK 156 (209)
Q Consensus 86 ---------~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~i~~~~ll~~~s~i~~eE~~l~~ 156 (209)
.+.++|.++|.|+++|||||+||+++.+++++.+. . + +.++...++++++++++ |..++|.+|++
T Consensus 333 ~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~g-f--~-s~lpyfy~iyf~~LLvh--R~~RDe~rC~~ 406 (428)
T KOG1435|consen 333 LKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCG-F--N-SPLPYFYPIYFTLLLVH--RAARDEHRCRS 406 (428)
T ss_pred cccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhcc-C--C-CCcchHHHHHHHHHHHH--HHhhhHHHHHH
Confidence 13578999999999999999999999888877642 2 1 12344557776665554 78999999999
Q ss_pred HcCCcHHHHHHHhhCC-CcccCC
Q 028414 157 KFGNMPAYRLYKKTTS-PLIPLP 178 (209)
Q Consensus 157 kyG~~~~Y~~Y~~~t~-~~iP~~ 178 (209)
||| ++|++|+++|| +++|.+
T Consensus 407 KYG--~~W~~Yc~~VpyriiP~V 427 (428)
T KOG1435|consen 407 KYG--EDWEEYCRKVPYRILPYV 427 (428)
T ss_pred HHh--hhHHHHHhhCCcccCCCC
Confidence 999 99999999998 899965
No 7
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.70 E-value=1.7e-16 Score=118.14 Aligned_cols=100 Identities=25% Similarity=0.440 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC---C--CCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHH
Q 028414 56 VDVIGWIMWSVGVSIEAIADQQKLSFKNS---P--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 130 (209)
Q Consensus 56 ~~~~g~~l~~~G~~l~~~ad~ql~~f~~~---~--~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~ 130 (209)
..++|+++.++|+++...+..+++...+. + ++.++++|+|+|+++|||+|+|.++.++|+++...+ ++.
T Consensus 2 ~~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s------~~~ 75 (106)
T PF04191_consen 2 RFVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGS------WLG 75 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCc------HHH
Confidence 35789999999999999999888765432 1 345679999999999999999999999998887432 222
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHhHcCCcHHH
Q 028414 131 ILGPIFLTLLLLFISGIPLLEESADKKFGNMPAY 164 (209)
Q Consensus 131 ~~~~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y 164 (209)
++..+...+ .........||+.+.++|| ++|
T Consensus 76 l~~~~~~~~-~~~~~~~~~EE~~L~~~fG--~~Y 106 (106)
T PF04191_consen 76 LLLAVLAFL-LYYIFIIRFEERFLERRFG--EEY 106 (106)
T ss_pred HHHHHHHHH-HHHHHHHHhHHHHHHHHhC--cCC
Confidence 222222222 2223335689999999999 766
No 8
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-16 Score=130.06 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHH
Q 028414 59 IGWIMWSVGVSIEAIADQQKLSF-----KNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 133 (209)
Q Consensus 59 ~g~~l~~~G~~l~~~ad~ql~~f-----~~~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~ 133 (209)
+|+.+..+|-+....|..+.... ++++..+++++++|+|+|+|||.|+|-++.|.|..++-++ +. + .
T Consensus 85 ~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~n-----pi-s--~ 156 (201)
T KOG2628|consen 85 LGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCN-----PI-S--L 156 (201)
T ss_pred CceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCceeEeccchhheeCchHHHHHHHHHHHHHHHhC-----HH-H--H
Confidence 67777778888888877776432 2344567889999999999999999988777775544222 11 2 2
Q ss_pred HHHHHHHHHHH-hChHHHHHHHHhHcCCcHHHHHHHhhCCCcccCCC
Q 028414 134 PIFLTLLLLFI-SGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 179 (209)
Q Consensus 134 ~i~~~~ll~~~-s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~~~ 179 (209)
.++..+++.++ .|++.||+.|.+-|| ++|.||+|+|+.=||+.+
T Consensus 157 v~f~~V~w~ff~~Ri~~EE~~Li~fFg--~~Y~eY~kkV~sGiPfi~ 201 (201)
T KOG2628|consen 157 VAFLLVVWRFFADRIKEEEKYLISFFG--SSYVEYAKKVPSGIPFIK 201 (201)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhh--HHHHHHHHhCCcCCCCCC
Confidence 23334555555 479999999999999 999999999998899864
No 9
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.52 E-value=9.2e-14 Score=102.39 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC---CCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHH-HHHHHHH
Q 028414 62 IMWSVGVSIEAIADQQKLSFKNS---PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV-ILGPIFL 137 (209)
Q Consensus 62 ~l~~~G~~l~~~ad~ql~~f~~~---~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~-~~~~i~~ 137 (209)
+++++|..+...|..+++++-+. ..++++++|+|+|+++|||||+|.++..+|..++..+ .|.+ ++..+.
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~-----~~~~~~~~~~~- 76 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFN-----AWLTALILFAL- 76 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT------HHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHHHh-----HHHHHHHHHHH-
Confidence 46788999999999998654332 2456789999999999999999976666664444332 2322 222111
Q ss_pred HHHHHHHhChHHHHHHHHh
Q 028414 138 TLLLLFISGIPLLEESADK 156 (209)
Q Consensus 138 ~~ll~~~s~i~~eE~~l~~ 156 (209)
....++.|++.||+.+.+
T Consensus 77 -~~~~l~~RI~~EE~~L~~ 94 (94)
T PF04140_consen 77 -VAWLLFVRIREEERALIE 94 (94)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcC
Confidence 112223579999998754
No 10
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=99.48 E-value=3.5e-13 Score=113.12 Aligned_cols=109 Identities=28% Similarity=0.361 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHHH
Q 028414 56 VDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPI 135 (209)
Q Consensus 56 ~~~~g~~l~~~G~~l~~~ad~ql~~f~~~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~i 135 (209)
...+|.++++.|++++..+|..+.+.|++.+++-|+.++|+|.|+-+|||+||++.|+|+++.+.+ +.++...+
T Consensus 148 r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws------~p~~aFa~ 221 (257)
T KOG1638|consen 148 RFLIGVVLFVTGMLINIYSDNILRTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWS------LPALAFAF 221 (257)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhh------HHHHHHHH
Confidence 678999999999999999999999999876677789999999999999999999999999887643 22222222
Q ss_pred HHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 136 FLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 136 ~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
+ +++.+ ..|+....+...+|| +||.+..+.+||++
T Consensus 222 f-t~~~l-~pRA~ahH~WY~~kF------e~YPk~RkAlIPfv 256 (257)
T KOG1638|consen 222 F-TICNL-GPRAYAHHKWYLKKF------EDYPKNRKALIPFV 256 (257)
T ss_pred H-HHHHh-hHHHHHHHHHHHHhh------ccCCccceeecccc
Confidence 2 33333 234555555666665 78889999999986
No 11
>PLN02392 probable steroid reductase DET2
Probab=99.47 E-value=3.1e-13 Score=116.05 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHH
Q 028414 55 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 134 (209)
Q Consensus 55 ~~~~~g~~l~~~G~~l~~~ad~ql~~f~~~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~ 134 (209)
+..++|++++++|.+++..+|.++.+.|++. +..++.++|+|+++.+|||+||++.|+|+++++.+ +.+++..
T Consensus 150 ~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g-~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s------~~~~~F~ 222 (260)
T PLN02392 150 WRFFGGLVVFLWGMRINVWSDRVLVGLKREG-GGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWS------WAGFGFF 222 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 3578899999999999999999999998764 56689999999999999999999999999887532 2111111
Q ss_pred HHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 135 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 135 i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
+. ++ .....++....+...|||| +||.++.+.+||++
T Consensus 223 ~~-~~-~nl~~rA~~~hkwY~~kFg-----~~ypk~RkaiIPfi 259 (260)
T PLN02392 223 LY-TC-SNLVPRACANHKWYLEKFG-----EDYPKGRKAVIPFL 259 (260)
T ss_pred HH-HH-HHHHHHHHHHHHHHHHHcc-----ccccCCCeEecCcc
Confidence 11 11 1122345666667778886 35777889999986
No 12
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=99.40 E-value=2.1e-12 Score=102.75 Aligned_cols=110 Identities=20% Similarity=0.360 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHH
Q 028414 55 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 134 (209)
Q Consensus 55 ~~~~~g~~l~~~G~~l~~~ad~ql~~f~~~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~ 134 (209)
...++|++++++|...+..+|.++.+.|++.+++.++.+.|+|+++.+|||++|++.|+|+++++.+ +.+++..
T Consensus 40 ~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~------~~~~~f~ 113 (150)
T PF02544_consen 40 PRFIIGLALFLIGSIGNFYSHLILANLRKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGS------WPSYAFA 113 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhh------hhhHHHH
Confidence 5678999999999999999999999888766666789999999999999999999999999887532 1111111
Q ss_pred HHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 135 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 135 i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
++. +.....++....+..++| +++|.++.+.+||++
T Consensus 114 ~~~--~~~l~~~A~~~h~wY~~~------F~~yp~~R~~lIPfi 149 (150)
T PF02544_consen 114 LFV--VVNLSPRAVQTHRWYKKK------FKEYPKNRKALIPFI 149 (150)
T ss_pred HHH--HHHHHHHHHHHHHHHHHH------CccccCCCeEecCcc
Confidence 111 111111233344444444 578888889999986
No 13
>PLN02560 enoyl-CoA reductase
Probab=99.28 E-value=8.5e-11 Score=103.62 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHH
Q 028414 55 AVDVIGWIMWSVGVSIEAIADQQKLSFKNS-PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 133 (209)
Q Consensus 55 ~~~~~g~~l~~~G~~l~~~ad~ql~~f~~~-~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~ 133 (209)
...++|++++++|.+.+..+|..+++.|++ .+.+.++...|+|+++-+|||++|++.|+|+++++.+ +.+++.
T Consensus 192 ~~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~------~~~~~F 265 (308)
T PLN02560 192 TQMKVGFGFGLVCQLANFYCHIILRNLRKPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQT------VAGYLF 265 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHcc------HHHHHH
Confidence 345889999999999999999999999876 4556679999999999999999999999999988632 111121
Q ss_pred HHHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCCCcccC
Q 028414 134 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPL 177 (209)
Q Consensus 134 ~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~ 177 (209)
.+.... ....++...++...++|++.+..++|.++...++|+
T Consensus 266 ~~~~~~--~m~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~ 307 (308)
T PLN02560 266 LAVAAA--IMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPF 307 (308)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHhccCccccccCCCceEeCCCc
Confidence 111111 112245666777888886212344577766666665
No 14
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=99.18 E-value=1.5e-10 Score=101.75 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHH
Q 028414 55 AVDVIGWIMWSVGVSIEAIADQQKLSFKNS--PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVIL 132 (209)
Q Consensus 55 ~~~~~g~~l~~~G~~l~~~ad~ql~~f~~~--~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~ 132 (209)
+..++|++++++|.+.+..+|..+.+.|++ .+++.++.+.|+|+++-+|||++|++.|+|+++++.+. ...+++++
T Consensus 209 ~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~~~--~~~~~l~~ 286 (323)
T PLN03164 209 WFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGT--DLTIWLLF 286 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCc--hHHHHHHH
Confidence 446899999999999999999999998843 23356799999999999999999999999998875321 11112211
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 133 GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 133 ~~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
++ ++.-...++....+...+|| +||.++.+.+||++
T Consensus 287 --~~--v~~nL~~~A~~tHkWY~kkF------~dYPk~RkAIIPfI 322 (323)
T PLN03164 287 --GF--VVANLTFAAAETHRWYLQKF------ENYPRNRYAIIPFV 322 (323)
T ss_pred --HH--HHHHHHHHHHHHHHHHHHhc------cccccCceEecCcc
Confidence 11 11111112444455555555 56888889999986
No 15
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.16 E-value=7e-10 Score=88.44 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCCcccccCccccccCchhHH-HHHHHHHHHHHhhcccCchh
Q 028414 52 SVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP---ENRGKWCNVGFWKYSRHPNYFG-EIFLWWGIFVASTPVLDGAE 127 (209)
Q Consensus 52 ~~~~~~~~g~~l~~~G~~l~~~ad~ql~~f~~~~---~~~~~lit~Gly~~~RHPnY~g-e~l~w~g~~l~~~~~~~~~~ 127 (209)
..++..++|+++.++...+...+..+++++.+.+ -++++++++|+||+.|||||+- .+.--+|+.+++. +
T Consensus 66 ~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~------A 139 (172)
T COG1755 66 FFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQ------A 139 (172)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHHHHHH------H
Confidence 4566778899999999999999999998876652 3567899999999999999999 4444667777652 3
Q ss_pred HHHH--HHHHHHHHHHHHHhChHHHHHHHHhHc
Q 028414 128 WLVI--LGPIFLTLLLLFISGIPLLEESADKKF 158 (209)
Q Consensus 128 ~~~~--~~~i~~~~ll~~~s~i~~eE~~l~~ky 158 (209)
|.+. ..|+. .++++ -|++.||+.+.+-+
T Consensus 140 ~~Ta~l~~p~y--a~~L~-vRIr~EekaL~~~~ 169 (172)
T COG1755 140 WYTALLFSPIY--ALLLY-VRIRQEEKALAELF 169 (172)
T ss_pred HHHHHHHHHHH--HHHHh-hhhhHHHHHHHHhc
Confidence 4432 34443 23333 37999999886643
No 16
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=98.09 E-value=2.4e-05 Score=67.84 Aligned_cols=109 Identities=17% Similarity=0.300 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHH
Q 028414 56 VDVIGWIMWSVGVSIEAIADQQKLSFKNSPE--NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 133 (209)
Q Consensus 56 ~~~~g~~l~~~G~~l~~~ad~ql~~f~~~~~--~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~ 133 (209)
.+++|.++++.|-.=...++.++.+-+++|. .+..++++|+++++..|||++|+++..|++..+.. ..+|.+++
T Consensus 193 ~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~----~~iwLv~~ 268 (304)
T KOG1640|consen 193 LQWLGLGIFAIGSIHQYASHEILGNLRKYPRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPD----LTIWLVFG 268 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCc----hHHHHHHH
Confidence 6778888888888777777777777776653 23558999999999999999999999996654322 22333333
Q ss_pred HHHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 134 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 134 ~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
-+..- +++ .+-.+.+...+| +++|.+..+.+||++
T Consensus 269 ~V~~N--~t~--aA~~Th~wY~~k------F~~yp~~R~AiiPfl 303 (304)
T KOG1640|consen 269 WVAAN--LTY--AALETHRWYLKK------FENYPKNRHAIIPFL 303 (304)
T ss_pred HHHHH--HHH--HHHHHHHHHHHh------hccCccccccccccc
Confidence 22110 111 133334444444 588889999999986
No 17
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.87 E-value=6.6e-05 Score=63.96 Aligned_cols=106 Identities=11% Similarity=0.165 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc-cccC-ccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHH
Q 028414 57 DVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKW-CNVG-FWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 134 (209)
Q Consensus 57 ~~~g~~l~~~G~~l~~~ad~ql~~f~~~~~~~~~l-it~G-ly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~ 134 (209)
..+|++.+++..+.+..++.-+++.+....++.++ ..+| ++.++.+|||+-|+..|+++.++.-+ +. +.
T Consensus 188 ~~~~l~~fv~~el~NF~~HI~LR~lrp~g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~------l~---a~ 258 (297)
T KOG1639|consen 188 VKLGLGGFVLCELGNFSCHILLRNLRPAGSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIGFAIMTQC------LA---AY 258 (297)
T ss_pred hhhhhHHHhhhhhcceeeEeehhhccCCcCccceeecCCccEEEEEecCCcceehHHHHHHHHHHHH------HH---HH
Confidence 35566666666666666666677776543333333 3445 89999999999999999998877421 11 11
Q ss_pred HHHHHHHHHHhChHHHHHHH--HhHcCCcHHHHHHHhhCCCcccCC
Q 028414 135 IFLTLLLLFISGIPLLEESA--DKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 135 i~~~~ll~~~s~i~~eE~~l--~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
+ +..++...+.-... .++|- +|+.+|.++...+||++
T Consensus 259 l-----Fl~vg~aqMtiWA~~Kh~~yl--KeFp~Ypr~r~~iiPFv 297 (297)
T KOG1639|consen 259 L-----FLTVGAAQMTIWAKGKHRRYL--KEFPDYPRRRKIIIPFV 297 (297)
T ss_pred H-----HHHHHHHHHHHHHHhhhHhHh--hhcccCCccccccCCCC
Confidence 1 11222223332222 23443 78889999999999974
No 18
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=97.59 E-value=0.0012 Score=54.71 Aligned_cols=94 Identities=22% Similarity=0.386 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHH
Q 028414 54 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 133 (209)
Q Consensus 54 ~~~~~~g~~l~~~G~~l~~~ad~ql~~f~~~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~ 133 (209)
.+...+..+++..++++-..+..+.+.+. +++++|||++.|..+ |..-=+.. + ....... +.+
T Consensus 67 ~~~~~l~~~lm~~a~il~~~a~~~~~~~~-------------i~r~~RHP~l~g~~l-WA~aHLl~-n-Gd~~~~l-LFg 129 (191)
T PF07298_consen 67 PWLRHLANLLMLLAFILLVAALFPPNPFS-------------IYRITRHPMLLGVLL-WALAHLLA-N-GDLASLL-LFG 129 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCcchH-------------HHHHhcCchHHHHHH-HHHHHhhh-c-CcHHHHH-HHH
Confidence 34556667777888776666655322111 999999999999764 42211211 1 0111121 222
Q ss_pred HHHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCC
Q 028414 134 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTS 172 (209)
Q Consensus 134 ~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~ 172 (209)
... ...+.+...+|++ ++ +| ++|++|+++|+
T Consensus 130 ~~~----~~al~~~~~~~rr-~~-~g--~~~~~~~~~~s 160 (191)
T PF07298_consen 130 GFL----AWALIGIILIDRR-RR-FG--DAWRAYPRRTS 160 (191)
T ss_pred HHH----HHHHHHHHHHHHh-hc-cc--cccccccCCCC
Confidence 221 1222247788888 66 98 88999999887
No 19
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=93.40 E-value=0.32 Score=38.83 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCCCcccccCccccccCchhHHHHHHHHHHHHHh
Q 028414 57 DVIGWIMWSVGVSIEAIADQQKLSFKNS-----PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 119 (209)
Q Consensus 57 ~~~g~~l~~~G~~l~~~ad~ql~~f~~~-----~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~ 119 (209)
.+.+..++.+|-++...+..+++.=.+. .... .-+|+=++++.+||+|.|..+..+|.++.-
T Consensus 66 pl~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm-~~VT~FPFnv~~nPmY~GStl~fLg~al~~ 132 (164)
T PLN02797 66 PLYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNI-PWVTEFPFGVIRDPQYVGSILSLLACLSWV 132 (164)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccc-cccccCCCCCCCCcchhhHHHHHHHHHHHh
Confidence 3678889999999999999988642221 0112 267888999999999999999998877653
No 20
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=90.37 E-value=4.2 Score=33.04 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCC--CCCCcccccCccccccCchhHHHHHHHHHHHHHh
Q 028414 56 VDVIGWIMWSVGVSIEAIADQQKLS---FKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 119 (209)
Q Consensus 56 ~~~~g~~l~~~G~~l~~~ad~ql~~---f~~~~--~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~ 119 (209)
..-+|.+++.+|.++...+...++- +..+- --..+=+|.=++...-+|+|.|..+..+|+++.-
T Consensus 97 ~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~ 165 (208)
T KOG4142|consen 97 AYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMH 165 (208)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhhcccccccccCCcccccchHHHHHHHHHc
Confidence 4567888888888887777766532 11110 0012235666899999999999999999998874
No 21
>COG4094 Predicted membrane protein [Function unknown]
Probab=88.50 E-value=0.39 Score=40.03 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=45.2
Q ss_pred ccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhh
Q 028414 91 WCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKT 170 (209)
Q Consensus 91 lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~ 170 (209)
+..+++=+.+|||.-.|..+..+|=.+.. + ......++.+ +++..+.++...||+.++||| +++..=+++
T Consensus 98 ~~~g~Ii~itRHP~l~g~~iWalaHll~n-G--d~~Svllfgg-----f~l~~~~~~~~~~rR~r~r~g--~a~~~~~~~ 167 (219)
T COG4094 98 LYEGRIIRITRHPQLLGVVIWALAHLLAN-G--DTFSVLLFGG-----FLLWAVVGVWSGDRRARKRYG--EAFVAPVQV 167 (219)
T ss_pred ccCCceEEEecCchhHHHHHHHHHHhhcc-C--ceeeHHHHHH-----HHHHHHHHhhhhhhhhhcccC--cceeeeecc
Confidence 55677889999999999865433322211 1 1111222222 122222347788999999999 888776666
Q ss_pred CCCcccCC
Q 028414 171 TSPLIPLP 178 (209)
Q Consensus 171 t~~~iP~~ 178 (209)
|++ +|+-
T Consensus 168 ts~-~pfa 174 (219)
T COG4094 168 TSR-IPFA 174 (219)
T ss_pred ccc-cchh
Confidence 653 5653
No 22
>COG3162 Predicted membrane protein [Function unknown]
Probab=60.72 E-value=67 Score=23.89 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=33.4
Q ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCC-CCcHHHHHHHHHHHHHHHHHHHH
Q 028414 10 DRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNAS-----DRDP-SVQAVDVIGWIMWSVGVSIEAIA 74 (209)
Q Consensus 10 D~R~~~~r~~~~~~~~~~~~Q~~~~~~~~lP~~~~~~~-----~~~~-~~~~~~~~g~~l~~~G~~l~~~a 74 (209)
..||.+++++...|.+ =+.-..+++++++|++.+... +..+ +.++-..+|...++.++++..+-
T Consensus 12 ~p~f~eLv~kr~~Fa~-~ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~IY 81 (102)
T COG3162 12 NPRFRELVRKRRRFAV-PLTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGIY 81 (102)
T ss_pred CHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHHH
Confidence 4899999998776421 111222233344444333211 1111 24555667777777777765553
No 23
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=42.70 E-value=19 Score=27.14 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=17.4
Q ss_pred HHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 154 ADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 154 l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
+.++| +.|.+|++++.+=||-+
T Consensus 89 ~~~~~---p~~~~yq~~t~R~ipv~ 110 (113)
T TIGR00026 89 VVRLY---PRYGRYQSRTDRPIPVF 110 (113)
T ss_pred HHHHC---cCHHHHHhhCCCcccEE
Confidence 34566 78999999999888753
No 24
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=30.10 E-value=72 Score=28.37 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 028414 37 VSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQK 78 (209)
Q Consensus 37 ~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~G~~l~~~ad~ql 78 (209)
=.+|+.+.-.--+...-++.|++...++.+|+++.++||.|.
T Consensus 142 KliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~ 183 (367)
T KOG1582|consen 142 KLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT 183 (367)
T ss_pred hhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc
Confidence 345555433222222345566666666666766666666664
No 25
>COG3462 Predicted membrane protein [Function unknown]
Probab=29.65 E-value=1.7e+02 Score=22.16 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.2
Q ss_pred HHHHHHHHhHcC
Q 028414 148 PLLEESADKKFG 159 (209)
Q Consensus 148 ~~eE~~l~~kyG 159 (209)
...|+.+++||.
T Consensus 88 sRA~eIlkER~A 99 (117)
T COG3462 88 SRAEEILKERYA 99 (117)
T ss_pred cHHHHHHHHHHh
Confidence 445667888884
No 26
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=28.65 E-value=86 Score=27.57 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHh
Q 028414 57 DVIGWIMWSVGVSIEAIAD-QQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 119 (209)
Q Consensus 57 ~~~g~~l~~~G~~l~~~ad-~ql~~f~~~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~ 119 (209)
.++|+.+.++|-++...+. .|+....+.+++..+ -.++..+|.|.| ..|.|+.+..
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~-~~~~~~~~l~~~------~W~~G~~~~~ 61 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLR-AGSGGRSYLRRP------LWWIGLLLMV 61 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccchhhHHHhhH------HHHHHHHHHh
Confidence 4678888888876666664 477666554331111 112344444444 4666665544
No 27
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=28.21 E-value=53 Score=25.31 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=16.3
Q ss_pred HHhHcCCcHHHHHHHhhCCCcccC
Q 028414 154 ADKKFGNMPAYRLYKKTTSPLIPL 177 (209)
Q Consensus 154 l~~kyG~~~~Y~~Y~~~t~~~iP~ 177 (209)
+.+++ +.|++|+++|.+-||-
T Consensus 107 ~~~~~---p~~~~y~~~t~R~ipv 127 (132)
T PF04075_consen 107 LVAAY---PGYADYQARTGRRIPV 127 (132)
T ss_dssp HHHHS---THHHHHHHHCSSTS-E
T ss_pred HHHHC---cChHHhcccCCCEeeE
Confidence 34667 8999999999988883
No 28
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=26.84 E-value=2.4e+02 Score=20.10 Aligned_cols=67 Identities=13% Similarity=-0.006 Sum_probs=33.9
Q ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCC-CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 028414 9 EDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNA-----SDRD-PSVQAVDVIGWIMWSVGVSIEAIADQ 76 (209)
Q Consensus 9 eD~R~~~~r~~~~~~~~~~~~Q~~~~~~~~lP~~~~~~-----~~~~-~~~~~~~~~g~~l~~~G~~l~~~ad~ 76 (209)
+|++|..++++-.++.. -+.-..++.+.++|+....+ .+.. ..+++-.++|+++++++.++..+--.
T Consensus 3 ~~p~f~~L~r~r~r~~~-~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~ 75 (91)
T PF04341_consen 3 RSPEFQELVRRRRRLAW-PLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVR 75 (91)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999988665321 11112222333333333221 1111 24666667777777666665444333
No 29
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=26.75 E-value=1.5e+02 Score=19.36 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=7.8
Q ss_pred hHHHHHHHHhHc
Q 028414 147 IPLLEESADKKF 158 (209)
Q Consensus 147 i~~eE~~l~~ky 158 (209)
+..+|+.+.+++
T Consensus 22 t~~eE~~~dq~~ 33 (52)
T PF14147_consen 22 TAKEEREIDQEF 33 (52)
T ss_pred HHHHHHHhHHHH
Confidence 567777765554
No 30
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=23.33 E-value=64 Score=21.27 Aligned_cols=13 Identities=23% Similarity=0.889 Sum_probs=10.0
Q ss_pred CchhHHHHHHHHH
Q 028414 102 HPNYFGEIFLWWG 114 (209)
Q Consensus 102 HPnY~ge~l~w~g 114 (209)
||||.++..=|++
T Consensus 2 HP~fv~D~~K~FS 14 (54)
T PF09124_consen 2 HPQFVPDKVKWFS 14 (54)
T ss_dssp -THHHHHHHHHHH
T ss_pred CccchhHHHHHHH
Confidence 9999999877754
No 31
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=23.13 E-value=2.1e+02 Score=25.87 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=34.0
Q ss_pred cccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCC-CcccC
Q 028414 99 YSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTS-PLIPL 177 (209)
Q Consensus 99 ~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~-~~iP~ 177 (209)
+.|++.|+|-.+--.+++.......+ ..|...+..++ +.+.++.. + . +-|++|++++- .+.|.
T Consensus 275 flR~~ey~gl~lRL~~i~~l~i~~~~-~~wl~~iv~~l----~~yl~~~Q-----L--~----~l~~~~~~~~~~~lyP~ 338 (386)
T PF05975_consen 275 FLRSGEYLGLYLRLTLIGALLIFFLP-GSWLSLIVGLL----FLYLTGFQ-----L--L----PLWRHFDYSPWTHLYPI 338 (386)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHH----HHHHHHHH-----H--H----HHHHHHHhCcchhhCCC
Confidence 67999999988765555544332222 22443322222 12211111 1 1 56777777764 67776
Q ss_pred CCC
Q 028414 178 PPV 180 (209)
Q Consensus 178 ~~~ 180 (209)
.++
T Consensus 339 ~~~ 341 (386)
T PF05975_consen 339 SEK 341 (386)
T ss_pred Chh
Confidence 654
No 32
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.35 E-value=5.1e+02 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=14.4
Q ss_pred HHHHHHh----hhHHHHHHHHHHHHHHHH
Q 028414 13 FDEMRSN----LGKLAIFWIFQAVWVWTV 37 (209)
Q Consensus 13 ~~~~r~~----~~~~~~~~~~Q~~~~~~~ 37 (209)
|..+|.. ++.||++++.|.+..++-
T Consensus 188 YkAFRsDSSf~F~~FFF~y~~q~~~~v~q 216 (313)
T KOG3088|consen 188 YKAFRTDSSFNFGAFFFTYFFQIVFCVFQ 216 (313)
T ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHH
Confidence 5666654 333555567777665543
Done!