Query 028414
Match_columns 209
No_of_seqs 167 out of 1596
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 5.1E-26 1.7E-30 186.9 15.8 116 53-178 74-193 (194)
2 3r5y_A Putative uncharacterize 68.9 2.8 9.5E-05 32.1 2.5 22 154-178 121-142 (147)
3 3h96_A F420-H2 dependent reduc 62.5 4.5 0.00015 30.8 2.6 22 154-178 115-138 (143)
4 3r5z_A Putative uncharacterize 60.5 4.5 0.00015 30.9 2.3 22 154-178 119-140 (145)
5 3r5l_A Deazaflavin-dependent n 58.2 1.4 4.7E-05 32.7 -1.0 22 154-178 97-118 (122)
6 2ket_A Cathelicidin-6; antimic 12.1 1.3E+02 0.0043 15.7 1.7 13 12-24 2-14 (27)
7 1vk5_A Expressed protein; stru 9.6 80 0.0027 23.8 0.5 11 162-172 43-53 (157)
8 2oxg_Z SOXZ protein; immunoglo 8.7 46 0.0016 23.8 -1.1 9 99-107 25-33 (108)
9 1v8h_A Sulfur oxidation protei 8.6 47 0.0016 23.6 -1.1 9 99-107 24-32 (107)
10 3b5d_A Multidrug transporter E 7.8 3.3E+02 0.011 18.8 3.2 22 51-72 81-102 (110)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.94 E-value=5.1e-26 Score=186.90 Aligned_cols=116 Identities=19% Similarity=0.301 Sum_probs=93.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHH
Q 028414 53 VQAVDVIGWIMWSVGVSIEAIADQQKLS-FKN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL 129 (209)
Q Consensus 53 ~~~~~~~g~~l~~~G~~l~~~ad~ql~~-f~~--~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~ 129 (209)
..+..++|++++++|++++..|+.|+++ |+. +++++++++|+|+|++||||||+|+++.|+|+++...+ ++
T Consensus 74 p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s------~~ 147 (194)
T 4a2n_B 74 PDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSN------WV 147 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTC------HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhcc------HH
Confidence 3567899999999999999999999865 443 34567889999999999999999999999998876422 33
Q ss_pred HHH-HHHHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 130 VIL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 130 ~~~-~~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
+++ .++.++++ +..+++.||+.+.++|| ++|++|+++||++||++
T Consensus 148 ~~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 148 VLIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence 333 23332222 33578999999999999 99999999999999985
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=68.92 E-value=2.8 Score=32.13 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=18.3
Q ss_pred HHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 154 ADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 154 l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
+.++| |.|.+|+++|.|-||-+
T Consensus 121 ~~~~~---P~y~~Yq~~t~R~IPv~ 142 (147)
T 3r5y_A 121 AVRAY---PTYQEYQDNTRRLIPVL 142 (147)
T ss_dssp HHHHC---THHHHHHHTCSSCCCEE
T ss_pred HHHHC---CCHHHHHhhcCCcCcEE
Confidence 45677 89999999999988853
No 3
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=62.45 E-value=4.5 Score=30.80 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=18.0
Q ss_pred HHhHcCCcHHHHHHHhhCC--CcccCC
Q 028414 154 ADKKFGNMPAYRLYKKTTS--PLIPLP 178 (209)
Q Consensus 154 l~~kyG~~~~Y~~Y~~~t~--~~iP~~ 178 (209)
+.++| |.|.+|+++|. +-||-+
T Consensus 115 ~~~~~---P~y~~Yq~~t~~~R~iPv~ 138 (143)
T 3h96_A 115 QARRY---PGFADYEKKTAGIRTIPVL 138 (143)
T ss_dssp HHHHC---THHHHHHHHTTTTCCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCCCcccEE
Confidence 45667 89999999999 888853
No 4
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=60.50 E-value=4.5 Score=30.87 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=18.0
Q ss_pred HHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 154 ADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 154 l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
+.++| |.|.+|+++|.+-||-+
T Consensus 119 ~~~~~---p~y~~Yq~~t~R~iPv~ 140 (145)
T 3r5z_A 119 AVEVW---PDYAEYQTKTTREIPVF 140 (145)
T ss_dssp HHHHC---THHHHHGGGCSSCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCcCceE
Confidence 34667 89999999999988853
No 5
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=58.19 E-value=1.4 Score=32.74 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.3
Q ss_pred HHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 154 ADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 154 l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
+.++| |+|.+|+++|.+-||-+
T Consensus 97 ~~~~~---p~y~~yq~~t~R~ipv~ 118 (122)
T 3r5l_A 97 LVTMY---PSYQDYQSWTDRTIPIV 118 (122)
T ss_dssp HHHHC---TTCCCTTGGGCTTSCEE
T ss_pred HHHHC---cCHHHHHhhcCCcccEE
Confidence 45778 89999999999988853
No 6
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=12.14 E-value=1.3e+02 Score=15.71 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=9.9
Q ss_pred cHHHHHHhhhHHH
Q 028414 12 RFDEMRSNLGKLA 24 (209)
Q Consensus 12 R~~~~r~~~~~~~ 24 (209)
||..+|+++.++|
T Consensus 2 rfkrfrkkfkklf 14 (27)
T 2ket_A 2 RFKRFRKKFKKLF 14 (27)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 7888888887654
No 7
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=9.65 E-value=80 Score=23.76 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.8
Q ss_pred HHHHHHHhhCC
Q 028414 162 PAYRLYKKTTS 172 (209)
Q Consensus 162 ~~Y~~Y~~~t~ 172 (209)
+-|++|+|+.|
T Consensus 43 EmYQ~YMK~iP 53 (157)
T 1vk5_A 43 EMYQDYMKQVP 53 (157)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 78999999976
No 8
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=8.73 E-value=46 Score=23.76 Aligned_cols=9 Identities=22% Similarity=0.087 Sum_probs=7.8
Q ss_pred cccCchhHH
Q 028414 99 YSRHPNYFG 107 (209)
Q Consensus 99 ~~RHPnY~g 107 (209)
.++|||..|
T Consensus 25 ~I~HPMetG 33 (108)
T 2oxg_Z 25 LISHKMESG 33 (108)
T ss_dssp EECCCCBCS
T ss_pred EeECCCccc
Confidence 589999887
No 9
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=8.56 E-value=47 Score=23.63 Aligned_cols=9 Identities=44% Similarity=0.704 Sum_probs=7.9
Q ss_pred cccCchhHH
Q 028414 99 YSRHPNYFG 107 (209)
Q Consensus 99 ~~RHPnY~g 107 (209)
.++|||..|
T Consensus 24 ~I~HPmetG 32 (107)
T 1v8h_A 24 VAQHPNEPG 32 (107)
T ss_dssp EECCCCBCS
T ss_pred EeECCCCcc
Confidence 599999887
No 10
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=7.76 E-value=3.3e+02 Score=18.77 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=18.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 028414 51 PSVQAVDVIGWIMWSVGVSIEA 72 (209)
Q Consensus 51 ~~~~~~~~~g~~l~~~G~~l~~ 72 (209)
+++++..++|+++.+.|+++-.
T Consensus 81 E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 81 QRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 4688899999999999987643
Done!