Query 028414
Match_columns 209
No_of_seqs 167 out of 1596
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 18:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028414.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028414hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 35.9 9.2 0.00067 22.6 1.9 13 102-114 2-14 (54)
2 d1rgoa2 g.66.1.1 (A:187-220) B 27.1 7.5 0.00055 20.8 0.4 12 100-111 1-12 (34)
3 d1vk5a_ a.220.1.1 (A:) Hypothe 9.3 65 0.0048 21.6 1.7 11 162-172 8-18 (121)
4 d1v8ha1 b.1.18.19 (A:2-107) Su 7.4 27 0.0019 23.2 -1.1 12 96-107 21-32 (106)
5 d1ng7a_ a.178.1.1 (A:) Soluble 6.1 1.2E+02 0.0087 17.9 1.6 16 162-177 32-47 (60)
6 d1ytqa2 b.11.1.1 (A:104-194) b 5.8 30 0.0022 22.1 -1.5 19 91-109 41-59 (91)
7 d1okia2 b.11.1.1 (A:145-236) b 5.3 31 0.0023 22.1 -1.7 19 91-109 42-60 (92)
8 d1h4ax2 b.11.1.1 (X:87-174) ga 4.9 36 0.0026 21.5 -1.6 19 91-109 39-57 (88)
9 d1ldda_ a.4.5.34 (A:) Anaphase 4.5 37 0.0027 21.2 -1.7 25 76-100 48-74 (74)
10 d1tzyc_ a.22.1.1 (C:) Histone 4.3 74 0.0054 20.6 -0.3 17 163-179 10-26 (95)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=35.88 E-value=9.2 Score=22.64 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=11.0
Q ss_pred CchhHHHHHHHHH
Q 028414 102 HPNYFGEIFLWWG 114 (209)
Q Consensus 102 HPnY~ge~l~w~g 114 (209)
||||.++..=|++
T Consensus 2 Hp~~~~D~~K~FS 14 (54)
T d1e7la1 2 HPNFVGDKSKEFS 14 (54)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CcchhhHHHHHHH
Confidence 9999999877754
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.07 E-value=7.5 Score=20.82 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=8.1
Q ss_pred ccCchhHHHHHH
Q 028414 100 SRHPNYFGEIFL 111 (209)
Q Consensus 100 ~RHPnY~ge~l~ 111 (209)
+|||.|--+++-
T Consensus 1 ~rhpkyKT~lC~ 12 (34)
T d1rgoa2 1 TRHPKYKTELCR 12 (34)
T ss_dssp CCCTTTTCSBCH
T ss_pred CCCCCccchhcc
Confidence 588888665543
No 3
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.28 E-value=65 Score=21.57 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.5
Q ss_pred HHHHHHHhhCC
Q 028414 162 PAYRLYKKTTS 172 (209)
Q Consensus 162 ~~Y~~Y~~~t~ 172 (209)
+-|++|+|+.|
T Consensus 8 emYQ~yMk~iP 18 (121)
T d1vk5a_ 8 EMYQDYMKQVP 18 (121)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 67999999976
No 4
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=7.40 E-value=27 Score=23.24 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=9.0
Q ss_pred ccccccCchhHH
Q 028414 96 FWKYSRHPNYFG 107 (209)
Q Consensus 96 ly~~~RHPnY~g 107 (209)
+=-+++|||.+|
T Consensus 21 vk~li~HPMeTG 32 (106)
T d1v8ha1 21 LQVVAQHPNEPG 32 (106)
T ss_dssp EEEEECCCCBCS
T ss_pred EEEEEECCCccc
Confidence 445788999877
No 5
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=6.11 E-value=1.2e+02 Score=17.87 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=13.8
Q ss_pred HHHHHHHhhCCCcccC
Q 028414 162 PAYRLYKKTTSPLIPL 177 (209)
Q Consensus 162 ~~Y~~Y~~~t~~~iP~ 177 (209)
++=++||++.+.++|-
T Consensus 32 eEVReYCk~kgWii~~ 47 (60)
T d1ng7a_ 32 QEVRDYCEKKGWIVNI 47 (60)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHCCeeecC
Confidence 7789999999999864
No 6
>d1ytqa2 b.11.1.1 (A:104-194) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.78 E-value=30 Score=22.09 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.5
Q ss_pred ccccCccccccCchhHHHH
Q 028414 91 WCNVGFWKYSRHPNYFGEI 109 (209)
Q Consensus 91 lit~Gly~~~RHPnY~ge~ 109 (209)
-+.+|.|-.--||||.|..
T Consensus 41 ~V~~G~Wv~Ye~~nf~G~~ 59 (91)
T d1ytqa2 41 RVQSGTWVGYQYPGYRGLQ 59 (91)
T ss_dssp EECSSCEEEEEETTTEEEE
T ss_pred EecCCCEEEEecCCcEEEE
Confidence 4788999999999999864
No 7
>d1okia2 b.11.1.1 (A:145-236) beta-Crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.31 E-value=31 Score=22.05 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.5
Q ss_pred ccccCccccccCchhHHHH
Q 028414 91 WCNVGFWKYSRHPNYFGEI 109 (209)
Q Consensus 91 lit~Gly~~~RHPnY~ge~ 109 (209)
-|..|.|-.--||||-|..
T Consensus 42 ~V~~G~Wv~ye~~nf~G~~ 60 (92)
T d1okia2 42 KVSSGTWVGYQYPGYRGYQ 60 (92)
T ss_dssp EEEESEEEEEEETTTEEEE
T ss_pred EEeCCCEEEEECCCCEEEE
Confidence 5789999999999998853
No 8
>d1h4ax2 b.11.1.1 (X:87-174) gamma-Crystallin {Human (Homo sapiens), isoform D [TaxId: 9606]}
Probab=4.91 E-value=36 Score=21.52 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=16.6
Q ss_pred ccccCccccccCchhHHHH
Q 028414 91 WCNVGFWKYSRHPNYFGEI 109 (209)
Q Consensus 91 lit~Gly~~~RHPnY~ge~ 109 (209)
-+.+|.|-.--||||-|..
T Consensus 39 ~V~~G~Wv~Ye~~nf~G~~ 57 (88)
T d1h4ax2 39 NVLEGSWVLYELSNYRGRQ 57 (88)
T ss_dssp EEEESCEEEEEETTTEEEE
T ss_pred EEccCCEEEEecCCcEEEE
Confidence 5788999999999998864
No 9
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.53 E-value=37 Score=21.19 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=14.8
Q ss_pred HHHHhcCCCCCCCCcc--cccCccccc
Q 028414 76 QQKLSFKNSPENRGKW--CNVGFWKYS 100 (209)
Q Consensus 76 ~ql~~f~~~~~~~~~l--it~Gly~~~ 100 (209)
.|+..|-...-+++++ +++|.|+++
T Consensus 48 ~eL~~FL~~~V~e~kL~~v~gG~YkLv 74 (74)
T d1ldda_ 48 QQLEGYLNTLADEGRLKYIANGSYEIV 74 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTTEEEEC
T ss_pred HHHHHHHHHHHhcCceEEecCCEEeeC
Confidence 4555554333345666 478999875
No 10
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=4.30 E-value=74 Score=20.55 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=13.3
Q ss_pred HHHHHHhhCCCcccCCC
Q 028414 163 AYRLYKKTTSPLIPLPP 179 (209)
Q Consensus 163 ~Y~~Y~~~t~~~iP~~~ 179 (209)
|=..||+.|..+||..|
T Consensus 10 EIRk~Qkst~lLIpk~p 26 (95)
T d1tzyc_ 10 EIRRYQKSTELLIRKLP 26 (95)
T ss_dssp HHHHHHHCCSCCSCHHH
T ss_pred HHHHHhCCccccccccc
Confidence 44678899999998764
Done!