BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028415
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 105/212 (49%), Gaps = 10/212 (4%)
Query: 7 LGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXX 66
LG+ PA +Y +L+ SP G YFK GIAP+++ V E RA PGGTG K GNY
Sbjct: 156 LGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGGNYAASLLA 215
Query: 67 XXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKS 122
G V++LD V +RY+EE+ NIF V G+ + TP + G++LPGITR S
Sbjct: 216 QAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLPGITRDS 275
Query: 123 IIDVAQSQGFQXXXXX------XXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGE 176
++ +A GF + EVF GTA V++PV + + +
Sbjct: 276 LLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRHGASEFRIAD 335
Query: 177 GGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208
G G V+ L LT +Q G AD W L
Sbjct: 336 GQPGEVTMALRDTLTGIQRGTFADTHGWMARL 367
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 108/213 (50%), Gaps = 10/213 (4%)
Query: 7 LGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXX 66
LG+ P+ EY +L+ SP G YFK GI P+++ + HE RA+PGGTG K GNY
Sbjct: 161 LGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLA 220
Query: 67 XXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKS 122
G V++LD + +RY+EE+ N+F V G+ + TP + G++LPGITR S
Sbjct: 221 QAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDS 280
Query: 123 IIDVAQSQGFQXXXXX------XXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGE 176
++ +A GF + EVF GTA V++PV + + + +
Sbjct: 281 LLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIAD 340
Query: 177 GGFGAVSQQLYSVLTQLQMGLIADKMNWTLELS 209
G G ++ L LT +Q G AD W L+
Sbjct: 341 GQPGEITMALRDTLTGIQRGTFADTHGWMARLN 373
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 108/213 (50%), Gaps = 10/213 (4%)
Query: 7 LGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXX 66
LG+ P+ EY +L+ SP G YFK GI P+++ + HE RA+PGGTG K GNY
Sbjct: 160 LGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLA 219
Query: 67 XXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKS 122
G V++LD + +RY+EE+ N+F V G+ + TP + G++LPGITR S
Sbjct: 220 QAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDS 279
Query: 123 IIDVAQSQGFQXXXXX------XXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGE 176
++ +A GF + EVF GTA V++PV + + + +
Sbjct: 280 LLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIAD 339
Query: 177 GGFGAVSQQLYSVLTQLQMGLIADKMNWTLELS 209
G G ++ L LT +Q G AD W L+
Sbjct: 340 GQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 107/212 (50%), Gaps = 4/212 (1%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNY 60
+G G V+G+ PA EY F I+ PVGNYFK G+AP N +++ + RA P GTG K GNY
Sbjct: 134 IGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAKVGGNY 193
Query: 61 XXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIF-VVKGNVISTPAIKGTILPGIT 119
+SDV+YLD +EEV S N F + K N TP + +ILP +T
Sbjct: 194 AASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITP-LSPSILPSVT 252
Query: 120 RKSIIDVAQSQ-GFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGK-RVSYGEG 177
+ S++ +A+ + G + E GTA V+SP+G + + V Y E
Sbjct: 253 KYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFHVFYSET 312
Query: 178 GFGAVSQQLYSVLTQLQMGLIADKMNWTLELS 209
G V+ +LY LT +Q G + W ++
Sbjct: 313 EVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD 344
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 6/212 (2%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNY 60
+G G +G+ APE+ F ++ PVG YFK G+ P N + + RA P GTG K GNY
Sbjct: 149 IGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTNFITS-DYDRAAPHGTGAAKVGGNY 207
Query: 61 XXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVV--KGNVISTPAIKGTILPGI 118
++DV+YLD +EE + N F + G TP +ILP I
Sbjct: 208 AASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTPQ-SPSILPSI 266
Query: 119 TRKSIIDVAQSQ-GFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGK-RVSYGE 176
T+ S++ +A+ + G + E GTA V++P+G I + V Y E
Sbjct: 267 TKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDDFHVFYSE 326
Query: 177 GGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208
G V+++LY L +Q G W +++
Sbjct: 327 SEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 17/223 (7%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGN 59
+G+ LG+ + + +SPVG YF G P++L + RA GGTG K GN
Sbjct: 147 IGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGN 206
Query: 60 YXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPAIKGTI 114
Y G VL+L + EV + N+F+ N ++TP + G I
Sbjct: 207 YGSSLFAQCEDVDNGCQQVLWL-YGRDHQITEVGTMNLFLYWINEDGEEELATPPLDGII 265
Query: 115 LPGITRKSIIDVAQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 167
LPG+TR+ I+D+A G F+ A E+F +GTA VV PV I Y
Sbjct: 266 LPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCPVSDILY 325
Query: 168 LGKRVSYGEGGFG-AVSQQLYSVLTQLQMGLIADKMNWTLELS 209
G+ + G ++ ++ S LT +Q G ++ +WT+ LS
Sbjct: 326 KGETIHIPTMENGPKLASRILSKLTDIQYG--REESDWTIVLS 366
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 17/223 (7%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGN 59
+G+ LG+ + + +SPVG YF G P++L + RA GGTG K GN
Sbjct: 167 IGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGN 226
Query: 60 YXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPAIKGTI 114
Y G VL+L + EV + N+F+ N ++TP + G I
Sbjct: 227 YGSSLFAQCEAVDNGCQQVLWL-YGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGII 285
Query: 115 LPGITRKSIIDVAQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 167
LPG+TR+ I+D+A G F+ A E+F +GTA VV PV I Y
Sbjct: 286 LPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILY 345
Query: 168 LGKRVSYGEGGFG-AVSQQLYSVLTQLQMGLIADKMNWTLELS 209
G+ + G ++ ++ S LT +Q G ++ +WT+ LS
Sbjct: 346 KGETIHIPTMENGPKLASRILSKLTDIQYG--REERDWTIVLS 386
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGN 59
+G+ LG++ + + PVG YF G + P++L+ + RA GG G K GN
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 60 YXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPAIKGTI 114
Y G VL+L + L EV + NIFV + + TP + G I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 115 LPGITRKSIIDVAQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 167
LPG+ R+S++D+AQ+ G F+ A EVF +GTA V+PV I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVAPVHRILY 325
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGN 59
+G+ LG++ + + PVG YF G + P++L+ + RA GG G K GN
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 60 YXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPAIKGTI 114
Y G VL+L + L EV + NIFV + + TP + G I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 115 LPGITRKSIIDVAQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 167
LPG+ R+S++D+AQ+ G F+ A EVF +GTA V+PV I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAPVHRILY 325
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 44 HRATPGGT-GGVKTIGNYXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKG 102
+RA P K GNY GY + + LD Y+ E + N+F VK
Sbjct: 148 NRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFEVKD 205
Query: 103 NVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFCTGTAVVVSPV 162
V+ TP + LPGITR +II +A+ G + ADEVF +GTA ++PV
Sbjct: 206 GVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPV 265
Query: 163 GSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNW 204
S+ + GEG G V++++ L G DK W
Sbjct: 266 RSV----DGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGW 303
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 44 HRATPGGT-GGVKTIGNYXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKG 102
+RA P K GNY GY + + LD Y+ E + N+F VK
Sbjct: 147 NRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFEVKD 204
Query: 103 NVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFCTGTAVVVSPV 162
V+ TP + LPGITR +II +A+ G + ADEVF +GTA ++PV
Sbjct: 205 GVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPV 264
Query: 163 GSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNW 204
S+ + GEG G V++++ L G DK W
Sbjct: 265 RSV----DGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGW 302
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGN 59
+G+ LG++ + + PVG YF G + P++L+ + RA GG G K GN
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 60 YXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPAIKGTI 114
Y G VL+L + L EV + NIFV + + TP + G I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 115 LPGITRKSIIDVAQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 167
LPG+ R+S++D+AQ+ G F+ A EVF +GTA V PV I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVCPVHRILY 325
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGN 59
+G+ LG++ + + PVG YF G + P++L+ + RA GG G K GN
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 60 YXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPAIKGTI 114
Y G VL+L + L EV + NIFV + + TP + G I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 115 LPGITRKSIIDVAQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 167
LPG+ R+S++D+AQ+ G F+ A EVF +GTA V PV I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILY 325
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGN 59
+G+ LG++ + + PVG YF G + P++L+ + RA GG G K GN
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 60 YXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPAIKGTI 114
Y G VL+L + L EV + NIFV + + TP + G I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 115 LPGITRKSIIDVAQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 167
LPG+ R+S++D+AQ+ G F+ A EVF +GTA V PV I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILY 325
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGN 59
+G+ LG++ + + PVG YF G + P++L+ + RA GG G K GN
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 60 YXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPAIKGTI 114
Y G VL+L + L EV + NIFV + + TP + G I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 115 LPGITRKSIIDVAQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 167
LPG+ R+S++D+AQ+ G F+ A EVF +GTA V PV I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILY 325
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 52 GGVKTIGNYXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIK 111
G K GNY G + L LD + Y+ E S N+F V+ VI A++
Sbjct: 156 GKAKVGGNYVNSALAKMEAVAAGADEALLLD--EEGYVAEGSGENLFFVRDGVIY--ALE 211
Query: 112 GTI-LPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGK 170
++ L GITR S+I +A+ G++ ADEVF TGTA V+PV I +
Sbjct: 212 HSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWR-- 269
Query: 171 RVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNW 204
G+G G V+ +L V + G + W
Sbjct: 270 --PIGKGTAGPVALRLREVYLEAVTGRRPEYEGW 301
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 7/151 (4%)
Query: 54 VKTIGNYXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGT 113
K G Y GY + L LD Y+ E S N F+V + TP + +
Sbjct: 181 AKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGENFFLVNRGKLYTPDL-AS 237
Query: 114 ILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVS 173
L GITR ++I +A+ G + ADE F TGTA V+P I L R +
Sbjct: 238 CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTP---IRELDNR-T 293
Query: 174 YGEGGFGAVSQQLYSVLTQLQMGLIADKMNW 204
G G G ++++L S + G A +W
Sbjct: 294 IGGGARGPITEKLQSAFFDVVNGKSAKHADW 324
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 59 NYXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGI 118
NY G D L+ + + ++ E + N+F+++ N++ TP ++ ILPGI
Sbjct: 144 NYLEAIIAQRQAIAVGADDALFFNT--ENHVTETTCANLFLIENNILYTPRVEDGILPGI 201
Query: 119 TRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFCTGT 155
TR +I Q DAD VF T +
Sbjct: 202 TRARLISHCQQHKXSVQEISLTKKRIEDADAVFLTNS 238
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 91 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 150
E S N+F+VK + TP++ IL GITR+++I +A+S +ADE
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 151 FCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNW 204
F T T+ V PV + S+ E G V+ L + L + NW
Sbjct: 236 FLTHTSAGVVPVRRLN----EHSFFEEEPGPVTATLXENFEPFVLNL---EENW 282
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 91 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 150
E SS N+F +K ++ T IL GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 151 FCTGTAVVVSPVGSITYLGKRVSYGEGG 178
F T T ++PV I GK + G+ G
Sbjct: 237 FVTSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 91 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 150
E SS N+F +K ++ T IL GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 151 FCTGTAVVVSPVGSITYLGKRVSYGEGG 178
F T T ++PV I GK + G+ G
Sbjct: 237 FVTSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 91 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 150
E SS N+F +K ++ T IL GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 151 FCTGTAVVVSPVGSITYLGKRVSYGEGG 178
F T T ++PV I GK + G+ G
Sbjct: 237 FVTSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 93 SSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFC 152
SS N+F +K ++ T IL GITR +I A DE+F
Sbjct: 179 SSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFV 238
Query: 153 TGTAVVVSPVGSITYLGKRVSYGEGG 178
T T ++PV I GK + G+ G
Sbjct: 239 TSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 74 GYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 133
G+ DV++ D R LE +S + KG+ I TP+ G ILPG T+ ++ A +G++
Sbjct: 204 GFDDVIFTDG--DRVLEGATS-TVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWR 260
Query: 134 XXXXXXXXXXXXDADEVF 151
AD V+
Sbjct: 261 CKEKDLSIDDLFGADSVW 278
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 93 SSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFC 152
SS N+F +K ++ T IL GITR +I A DE+F
Sbjct: 179 SSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFV 238
Query: 153 TGTAVVVSPVGSITYLGKRVSYGEGG 178
T T ++PV I GK + G+ G
Sbjct: 239 TSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 88 YLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDA 147
++ E + N+F KGNV+ TP + + GI R+ I + +Q A
Sbjct: 170 WVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQA 229
Query: 148 DEVFCTGTAVVVSPV 162
DE+ + V PV
Sbjct: 230 DEMVICNALMPVMPV 244
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 91 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 150
E SS N+F +K ++ T I GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 151 FCTGTAVVVSPVGSITYLGKRVSYGEGG 178
F T T ++PV I GK + G+ G
Sbjct: 237 FVTSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|1P8A|A Chain A, Solution Structure Of The Low Molecular Weight Protein
Tyrosine Phosphatase From Tritrichomonas Foetus
Length = 146
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 97 IFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 133
+FV GN+ +PA +G + K IID A + GF
Sbjct: 8 LFVCLGNICRSPACEGICRDMVGDKLIIDSAATSGFH 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,798,860
Number of Sequences: 62578
Number of extensions: 211396
Number of successful extensions: 395
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 35
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)