Query 028415
Match_columns 209
No_of_seqs 185 out of 1447
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02782 Branched-chain amino 100.0 7.2E-48 1.6E-52 345.6 26.4 208 2-209 196-403 (403)
2 PLN02259 branched-chain-amino- 100.0 3.1E-47 6.8E-52 340.0 25.4 207 1-208 181-387 (388)
3 PLN02883 Branched-chain amino 100.0 1.9E-46 4.1E-51 334.4 25.0 208 1-209 177-384 (384)
4 PLN03117 Branched-chain-amino- 100.0 8.9E-45 1.9E-49 321.6 25.5 203 4-208 148-350 (355)
5 TIGR01123 ilvE_II branched-cha 100.0 7E-44 1.5E-48 311.0 25.0 201 6-208 106-313 (313)
6 TIGR01122 ilvE_I branched-chai 100.0 2.1E-43 4.6E-48 305.9 23.9 196 6-208 98-298 (298)
7 PRK13357 branched-chain amino 100.0 7.1E-43 1.5E-47 309.6 24.8 203 6-208 147-355 (356)
8 KOG0975 Branched chain aminotr 100.0 4.1E-43 9E-48 304.6 18.9 204 1-206 169-378 (379)
9 PRK06606 branched-chain amino 100.0 6.3E-42 1.4E-46 297.9 24.1 196 6-208 107-306 (306)
10 cd01557 BCAT_beta_family BCAT_ 100.0 5.8E-41 1.2E-45 288.5 23.3 186 6-196 93-279 (279)
11 PRK12479 branched-chain amino 100.0 2.3E-39 5E-44 281.0 22.9 185 6-198 100-288 (299)
12 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 7.8E-39 1.7E-43 270.8 21.6 177 6-190 77-256 (256)
13 PRK08320 branched-chain amino 100.0 1.6E-38 3.4E-43 274.2 22.8 183 5-195 98-284 (288)
14 PRK13356 aminotransferase; Pro 100.0 4.7E-38 1E-42 271.1 23.4 169 14-195 114-283 (286)
15 cd01558 D-AAT_like D-Alanine a 100.0 4.8E-38 1E-42 268.5 22.0 174 6-190 94-270 (270)
16 PRK07544 branched-chain amino 100.0 4.7E-38 1E-42 271.9 21.9 183 6-199 105-291 (292)
17 PRK12400 D-amino acid aminotra 100.0 1.1E-37 2.3E-42 269.5 22.8 179 6-196 104-284 (290)
18 COG0115 IlvE Branched-chain am 100.0 9.2E-38 2E-42 269.2 21.8 186 2-197 95-283 (284)
19 PRK06092 4-amino-4-deoxychoris 100.0 8.6E-38 1.9E-42 266.9 21.4 176 6-192 89-267 (268)
20 PRK07650 4-amino-4-deoxychoris 100.0 2.1E-37 4.6E-42 266.6 23.3 179 6-196 96-277 (283)
21 cd01559 ADCL_like ADCL_like: 4 100.0 1.1E-37 2.3E-42 263.8 19.9 172 6-190 76-249 (249)
22 PLN02845 Branched-chain-amino- 100.0 5.1E-37 1.1E-41 270.3 23.1 181 6-197 137-325 (336)
23 PRK06680 D-amino acid aminotra 100.0 1.4E-36 3.1E-41 262.0 23.4 180 6-197 99-284 (286)
24 TIGR01121 D_amino_aminoT D-ami 100.0 2.3E-36 5E-41 259.4 23.2 167 14-192 107-273 (276)
25 PRK07849 4-amino-4-deoxychoris 100.0 4E-36 8.8E-41 260.0 23.3 171 14-194 112-288 (292)
26 TIGR03461 pabC_Proteo aminodeo 100.0 1.8E-36 4E-41 257.7 20.7 170 7-187 88-260 (261)
27 PRK09266 hypothetical protein; 100.0 1.2E-35 2.7E-40 253.6 20.0 168 6-192 92-260 (266)
28 PF01063 Aminotran_4: Aminotra 100.0 4.6E-35 9.9E-40 243.7 18.0 131 50-190 100-231 (231)
29 PRK07546 hypothetical protein; 100.0 4.7E-31 1E-35 218.1 17.0 140 15-165 69-209 (209)
30 PRK07101 hypothetical protein; 99.9 3.7E-22 7.9E-27 162.6 12.4 96 51-159 92-187 (187)
31 PF15507 DUF4649: Domain of un 57.7 17 0.00037 25.0 3.4 53 135-188 11-65 (72)
32 TIGR00829 FRU PTS system, fruc 54.0 25 0.00055 24.7 4.0 33 124-156 21-62 (85)
33 PRK10474 putative PTS system f 50.4 31 0.00068 24.3 4.0 36 121-156 4-48 (88)
34 cd05569 PTS_IIB_fructose PTS_I 49.8 35 0.00075 24.4 4.3 37 121-157 19-64 (96)
35 PF13051 DUF3912: Protein of u 41.6 33 0.00072 22.6 2.7 39 93-131 30-68 (68)
36 COG1445 FrwB Phosphotransferas 36.2 89 0.0019 23.8 4.7 36 121-156 22-66 (122)
37 PRK10427 putative PTS system f 34.9 77 0.0017 23.6 4.2 33 124-156 26-67 (114)
38 cd01712 ThiI ThiI is required 33.6 51 0.0011 25.8 3.3 64 65-136 94-160 (177)
39 PF04322 DUF473: Protein of un 33.2 1.1E+02 0.0023 23.2 4.7 60 114-174 5-78 (119)
40 PRK06683 hypothetical protein; 32.0 70 0.0015 22.3 3.4 31 119-150 41-71 (82)
41 PRK13602 putative ribosomal pr 30.7 78 0.0017 22.0 3.5 30 118-148 40-69 (82)
42 cd03079 GST_N_Metaxin2 GST_N f 30.3 1.8E+02 0.0039 19.8 5.4 58 104-172 2-61 (74)
43 PF03683 UPF0175: Uncharacteri 27.7 52 0.0011 22.5 2.1 29 114-145 42-70 (76)
44 PF09778 Guanylate_cyc_2: Guan 27.6 77 0.0017 26.4 3.4 27 120-146 92-118 (212)
45 COG2257 Uncharacterized homolo 27.4 42 0.00091 24.2 1.6 32 116-147 30-61 (92)
46 PRK13601 putative L7Ae-like ri 24.5 1.2E+02 0.0026 21.2 3.5 30 118-148 37-66 (82)
47 PRK01018 50S ribosomal protein 23.3 1.2E+02 0.0027 21.7 3.5 34 116-149 43-76 (99)
48 PF09954 DUF2188: Uncharacteri 21.3 1.9E+02 0.0042 18.5 3.9 27 64-92 33-59 (62)
49 PTZ00106 60S ribosomal protein 21.1 1.4E+02 0.003 22.0 3.5 34 116-149 52-85 (108)
No 1
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=7.2e-48 Score=345.57 Aligned_cols=208 Identities=91% Similarity=1.376 Sum_probs=193.4
Q ss_pred CCCCCCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEE
Q 028415 2 GSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYL 81 (209)
Q Consensus 2 g~~~~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~lll 81 (209)
|+++.+|+.++.+++++|++.|.++++..|.+++++.++.+++|..|++++++|+++||+++++++++|+++|+||+|++
T Consensus 196 g~~~~lG~~~~~~~~~~i~~~p~~~~~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~L 275 (403)
T PLN02782 196 GSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYL 275 (403)
T ss_pred ecCCCcCcCCCCCcEEEEEEEECccccccCCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEE
Confidence 55667899887789999999999887777777888888766889999999999998899999999999999999999999
Q ss_pred cCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEE
Q 028415 82 DCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSP 161 (209)
Q Consensus 82 d~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~p 161 (209)
|...+|+|+|++++|+|++++++|+||+++.++|+||||+.||++|+++|++|+|++++++||.+|||+|+|||+.+|+|
T Consensus 276 d~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~P 355 (403)
T PLN02782 276 DCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSP 355 (403)
T ss_pred eCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEE
Confidence 94227999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeCC
Q 028415 162 VGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLELS 209 (209)
Q Consensus 162 V~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~ 209 (209)
|.+|.++|+.+.+++|++||++++|++.|.++|+|+.+|+++|+.+|+
T Consensus 356 V~~I~~~g~~~~~~~g~~Gpvt~~L~~~l~~iq~G~~~~~~~W~~~v~ 403 (403)
T PLN02782 356 VGSITYKGKRVSYGEGGFGTVSQQLYTVLTSLQMGLIEDNMNWTVELS 403 (403)
T ss_pred EEEEEECCEEEeCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCeEECC
Confidence 999988899887788889999999999999999999999999999884
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=3.1e-47 Score=339.98 Aligned_cols=207 Identities=65% Similarity=1.067 Sum_probs=188.7
Q ss_pred CCCCCCCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEE
Q 028415 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLY 80 (209)
Q Consensus 1 ~g~~~~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~ll 80 (209)
+|+++.+|+.++.++++++++.|.++++..|.+++++.+++++.|..|+.++++|+++||+++++++++|+++|+||+|+
T Consensus 181 ~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~G~de~L~ 260 (388)
T PLN02259 181 MGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLY 260 (388)
T ss_pred EecCCccCcCCCCCcEEEEEEEechhhhhcCcceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 35566689988778999999999988777777788888766788999988999999889999999999999999999999
Q ss_pred EcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeE
Q 028415 81 LDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVS 160 (209)
Q Consensus 81 ld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~ 160 (209)
+|...+|+|+|++++|+|++++++|+||+++.++|+||||+.+|++|++.|++|+|++++++||.+|||+|+|||+.+|+
T Consensus 261 Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~V~ 340 (388)
T PLN02259 261 LDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVA 340 (388)
T ss_pred ecCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcceEE
Confidence 99533799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 161 PVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 161 pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
||++|++.++.+.++++ .|+++++|+++|.+||+|+.+|+++|+..|
T Consensus 341 PV~~I~~~~~~~~~~~~-~g~~t~~L~~~l~~iq~G~~~~~~~W~~~~ 387 (388)
T PLN02259 341 PVGTITYQEKRVEYKTG-DESVCQKLRSVLVGIQTGLIEDNKGWVTDI 387 (388)
T ss_pred EEEEEecCCceEEeCCC-CCHHHHHHHHHHHHHHcCCCCCCCCCeEEC
Confidence 99999766676556654 489999999999999999999999999876
No 3
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.9e-46 Score=334.36 Aligned_cols=208 Identities=58% Similarity=0.901 Sum_probs=186.5
Q ss_pred CCCCCCCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEE
Q 028415 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLY 80 (209)
Q Consensus 1 ~g~~~~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~ll 80 (209)
+|+++.+|+.++.+++++|++.|.++++..|.+++++.++..++|+.|++++++|+++||+++++++++|+++|+||+|+
T Consensus 177 ~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~G~de~L~ 256 (384)
T PLN02883 177 FGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLY 256 (384)
T ss_pred EecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHCCCCEEEE
Confidence 35556789987788999999999998877777788888876668999999999999989999999999999999999999
Q ss_pred EcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeE
Q 028415 81 LDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVS 160 (209)
Q Consensus 81 ld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~ 160 (209)
+|.+++|+|+|++++|||++++++|+||+++.++|+||||+.||++|+++|++|+|++++++||.+|||+|+|||+.+|+
T Consensus 257 Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~ 336 (384)
T PLN02883 257 LDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVA 336 (384)
T ss_pred EeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheE
Confidence 99632479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeCC
Q 028415 161 PVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLELS 209 (209)
Q Consensus 161 pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~ 209 (209)
||.+|++.++.+.+.-+ .||++++|+++|.+||+|+.+|+++|+.+|.
T Consensus 337 PV~~I~~~~~~~~~~~~-~G~vt~~L~~~l~~iq~G~~~d~~~W~~~~~ 384 (384)
T PLN02883 337 SVGSITFKNTRTEYKVG-DGIVTQQLRSILLGIQTGSIQDTKDWVLQIA 384 (384)
T ss_pred EEEEEeccCceeecccC-CCHHHHHHHHHHHHHHcCCCCCCCCCeEeCC
Confidence 99999765554322222 3899999999999999999999999999873
No 4
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=8.9e-45 Score=321.61 Aligned_cols=203 Identities=57% Similarity=0.961 Sum_probs=179.5
Q ss_pred CCCCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcC
Q 028415 4 GAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDC 83 (209)
Q Consensus 4 ~~~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~ 83 (209)
++.+|+.++..+.+++++.|.++++.. .+++++.+++.++|..|+.++++|+++||+++++++++|+++|+||+|++|.
T Consensus 148 ~~~~g~~~~~~~~~~i~~~p~~~~~~~-~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~ 226 (355)
T PLN03117 148 GAVLGVAPAPEYTFLIYASPVGNYHKA-SSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDA 226 (355)
T ss_pred cCccCcCCCCCcEEEEEEEeccccccC-CCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeC
Confidence 345677666677889999988654432 3567777765567888888899999769999999999999999999999996
Q ss_pred ccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEE
Q 028415 84 VHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVG 163 (209)
Q Consensus 84 ~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~ 163 (209)
+++|+|+|++++|||+++|++|+||+++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.
T Consensus 227 ~~~g~v~E~~~sNlF~v~~~~l~TP~l~~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~ 306 (355)
T PLN03117 227 ATGKNIEELSACNIFILKGNIVSTPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVE 306 (355)
T ss_pred CCCCEEEEcCcEEEEEEECCEEEeCCCcCCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEccCcceEEEEE
Confidence 22369999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 164 SITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 164 ~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
+|++.++.+.++++. +|+|++|+++|.+||+|+.+++++|+..|
T Consensus 307 ~i~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~~~~~~~W~~~v 350 (355)
T PLN03117 307 TVTFHDKKVKYRTGE-EALSTKLHLILTNIQMGVVEDKKGWMVEI 350 (355)
T ss_pred EEEecCceEEeCCCC-ChHHHHHHHHHHHHhCCCCCCCCCCEEEc
Confidence 997666666677765 89999999999999999999999999987
No 5
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=7e-44 Score=311.01 Aligned_cols=201 Identities=47% Similarity=0.819 Sum_probs=178.3
Q ss_pred CCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCcc
Q 028415 6 VLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVH 85 (209)
Q Consensus 6 ~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~ 85 (209)
.+|++++..+++++++.|+++++..+.+++++.++..+.|..|..++++||..||+++++|+++|+++|+||+|++|+
T Consensus 106 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~g~deal~ld~-- 183 (313)
T TIGR01123 106 NLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDP-- 183 (313)
T ss_pred ccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceeccccHHHHHHHHHHHHCCCCEEEEEeC--
Confidence 467776667889999998876555565566665545667888877899999559999999999999999999999998
Q ss_pred CeE--EEeeCceEEEEEEC-CEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhcc----ceeEEEeccCe
Q 028415 86 KRY--LEEVSSCNIFVVKG-NVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDA----DEVFCTGTAVV 158 (209)
Q Consensus 86 ~g~--v~E~s~~Nlf~~~~-~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~a----de~fl~ns~~g 158 (209)
+|. |+|++++|+|++++ |+|+|||++.++|+||||+.++++|++.|++|+|++++++||.+| ||+|+|||++|
T Consensus 184 ~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~devfltnS~~g 263 (313)
T TIGR01123 184 VEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAV 263 (313)
T ss_pred CCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEEecCHHHHHHHHhcCCEEEEccCceE
Confidence 654 99999999999985 799999999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 159 VSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 159 i~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
|+||++|++|++.+.+++|++||++++|+++|.++++|+.++..+|+.+|
T Consensus 264 i~PV~~i~~d~~~~~~~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 313 (313)
T TIGR01123 264 ITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWIVEV 313 (313)
T ss_pred EEEEEEEEECCeEEEcCCCCCChHHHHHHHHHHHHhcCCCCCCCCCeeeC
Confidence 99999997677776668889999999999999999999999999999876
No 6
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=2.1e-43 Score=305.93 Aligned_cols=196 Identities=36% Similarity=0.575 Sum_probs=174.3
Q ss_pred CCCcCCC--CCcEEEEEEEecCCcccCC--cccEEEEEeccccccCCCCC-CCCccccCHHHHHHHHHHHHHCCCCEEEE
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFKEG--IAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLY 80 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~~A~~~g~de~ll 80 (209)
.+|+.++ ..|++++++.|++.++... .+++++.++ +++|..+..+ +++||+|||+.+++++++|+++|+||+||
T Consensus 98 ~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K~~~~yl~~v~a~~~a~~~g~de~l~ 176 (298)
T TIGR01122 98 DLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAIL 176 (298)
T ss_pred CCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccchhhhhhHHHHHHHHHHHHcCCCEEEE
Confidence 5788763 4788999999886543221 246777775 4677776665 89999866999999999999999999999
Q ss_pred EcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeE
Q 028415 81 LDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVS 160 (209)
Q Consensus 81 ld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~ 160 (209)
+|+ +|+|+|++++|+|++++++|+||+++.++|+||||+.++++|++.|++|+|++++++||.+|||+|+|||++||+
T Consensus 177 ld~--~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~ 254 (298)
T TIGR01122 177 LDV--EGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEIT 254 (298)
T ss_pred ECC--CCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEE
Confidence 998 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 161 PVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 161 pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
||++| |++.+ ++|++||++++|++.|.++++++.++.++|+..|
T Consensus 255 PV~~i--d~~~~--~~~~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 298 (298)
T TIGR01122 255 PIREV--DGRKI--GNGRRGPVTKKLQEAFFDLVTGGTEDYWGWLTYV 298 (298)
T ss_pred EEEEE--CCEEC--CCCCCChHHHHHHHHHHHHHcCCCCCcCCCceeC
Confidence 99999 67765 8889999999999999999999989999998764
No 7
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=7.1e-43 Score=309.64 Aligned_cols=203 Identities=46% Similarity=0.805 Sum_probs=178.1
Q ss_pred CCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCcc
Q 028415 6 VLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVH 85 (209)
Q Consensus 6 ~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~ 85 (209)
.+|+.+...+++++++.|+++++..+.+++++.++..+.|..|+.++++||..||+++++|+++|+++|+||+|++|.+.
T Consensus 147 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~ 226 (356)
T PRK13357 147 FLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVE 226 (356)
T ss_pred cccccCCCccEEEEEEEechhhcccCCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 46776556789999999887655445567777766467888888889999944999999999999999999999999412
Q ss_pred CeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHH------HhccceeEEEeccCee
Q 028415 86 KRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEE------LLDADEVFCTGTAVVV 159 (209)
Q Consensus 86 ~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~e------l~~ade~fl~ns~~gi 159 (209)
+|+|+|++++|||++++++|+|||++.++|+||||+.|+++|++.|++|+|++++++| |.+|||+|+|||+.||
T Consensus 227 ~G~V~E~s~sNlF~v~~~~l~TPpl~~giL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~AdevFltnS~~gi 306 (356)
T PRK13357 227 HTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVI 306 (356)
T ss_pred CCEEEEcCcEEEEEEECCEEEECCCCCCCCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcceEEEEcccccEE
Confidence 7999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred EEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 160 SPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 160 ~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
+||++|+.+++...+++|++||++++|+++|.+.++|+.++..+|+..|
T Consensus 307 ~PV~~id~~~~~~~~~~g~~g~~t~~L~~~~~~~~~~~~~~~~~w~~~~ 355 (356)
T PRK13357 307 TPIGGIKYKDKEFVIGDGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKV 355 (356)
T ss_pred EEEEEEEeCCCEEEcCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEeC
Confidence 9999995433333457888999999999999999999999999999875
No 8
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-43 Score=304.56 Aligned_cols=204 Identities=56% Similarity=0.872 Sum_probs=192.7
Q ss_pred CCCCCCCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEE
Q 028415 1 MGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLY 80 (209)
Q Consensus 1 ~g~~~~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~ll 80 (209)
||+++.+|..+..+++++++++|..+|+..|.++++|.+.+.++|++|+.+++.|+.+||+++++++.||+.+||+|+||
T Consensus 169 ~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLw 248 (379)
T KOG0975|consen 169 IGTDPVLGVSPAPEATLFVIVSPVGPYFKSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLW 248 (379)
T ss_pred ccCCcccccccCCcceEEEEEcccchhccccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEE
Confidence 68889999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred EcCccCeEEEeeCceEEEEEECCE--EEecCCCCCcccCcHHHHHHHHHHHCC-CcEEEEEcCHHHHhccceeEEEeccC
Q 028415 81 LDCVHKRYLEEVSSCNIFVVKGNV--ISTPAIKGTILPGITRKSIIDVAQSQG-FQVEERLVTVEELLDADEVFCTGTAV 157 (209)
Q Consensus 81 ld~~~~g~v~E~s~~Nlf~~~~~~--l~TP~~~~~~L~GitR~~vl~~a~~~g-~~v~e~~i~~~el~~ade~fl~ns~~ 157 (209)
||.+ +++|+|.+++|+|+++++. ++|||++..|||||||+.++++|+++| ++|+||.++++|+.+|+|+|.|+|+.
T Consensus 249 L~~d-~~~ItEv~tmNiF~v~~n~~elvTPp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~ 327 (379)
T KOG0975|consen 249 LDGD-GGYITEVGTMNIFMVKKNEDELVTPPLDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAA 327 (379)
T ss_pred EecC-CCceeeccceeEEEEEcCceeEecCCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhccccee
Confidence 9983 4499999999999999988 999999999999999999999999999 99999999999999999999999999
Q ss_pred eeEEEEEEEECC---eEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCee
Q 028415 158 VVSPVGSITYLG---KRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTL 206 (209)
Q Consensus 158 gi~pV~~i~~~~---~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~ 206 (209)
.|.||..|.+.+ +...+++|+.||++++|+++|.+||+|. ++..+|++
T Consensus 328 ~v~pV~~i~~~~~~i~~~~~~~g~~g~l~~~l~~~l~~iq~g~-~~~~~w~~ 378 (379)
T KOG0975|consen 328 VVSPVGSILYKDEKIHIPTIGEGKEGPLAKKLLSTLTDIQYGR-EPKKGWTV 378 (379)
T ss_pred eeccccceeecccccceeecCCCCccHHHHHHHHHHHHhhcCC-cCCCCccc
Confidence 999999998877 3324788999999999999999999999 78899985
No 9
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=6.3e-42 Score=297.86 Aligned_cols=196 Identities=34% Similarity=0.558 Sum_probs=172.8
Q ss_pred CCCcCCC-CCcEEEEEEEecCCcccC-C-cccEEEEEeccccccCCCC-CCCCccccCHHHHHHHHHHHHHCCCCEEEEE
Q 028415 6 VLGLAPA-PEYTFLIYVSPVGNYFKE-G-IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYL 81 (209)
Q Consensus 6 ~~G~~~~-~~~~~~i~~~p~~~~~~~-g-~~~~~l~~~~~~~r~~~~~-~~~~Kt~~~y~~~~~a~~~A~~~g~de~lll 81 (209)
.+|+.+. ..+++++++.|++.++.. . .+++++.++ +++|..+.. ++++|+..||+.+++++++|+++|+||+|++
T Consensus 107 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~G~de~l~l 185 (306)
T PRK06606 107 GLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNSIPTRAKASGNYLNSILAKTEARRNGYDEALLL 185 (306)
T ss_pred ccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCCcCcchhhhhccHHHHHHHHHHHHcCCCEEEEE
Confidence 5677655 467888888887654322 2 246777765 456776655 4889976699999999999999999999999
Q ss_pred cCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEE
Q 028415 82 DCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSP 161 (209)
Q Consensus 82 d~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~p 161 (209)
|+ +|+|+|++++|||++++++|+||+++.++|+||||+.++++|++.|++|+|++++++||.+|||+|+|||++||+|
T Consensus 186 ~~--~g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~P 263 (306)
T PRK06606 186 DV--EGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTP 263 (306)
T ss_pred CC--CCCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEE
Confidence 98 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 162 VGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 162 V~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
|++| |++.+ ++|++||++++|+++|.+.+.++.+|..+|+..|
T Consensus 264 V~~i--d~~~~--~~g~~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
T PRK06606 264 IREV--DGRQI--GNGKRGPITEKLQSAYFDIVRGRTEKYAHWLTPV 306 (306)
T ss_pred EEEE--CcEEC--CCCCCCHHHHHHHHHHHHHHcCCCCCCCCCcccC
Confidence 9999 77765 8888999999999999999999989999998764
No 10
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=5.8e-41 Score=288.48 Aligned_cols=186 Identities=50% Similarity=0.826 Sum_probs=163.9
Q ss_pred CCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCcc
Q 028415 6 VLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVH 85 (209)
Q Consensus 6 ~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~ 85 (209)
.+|+.++..+++++++.|+++++.....++++.++ +++|..|..++.+|+..||+.+++|+++|+++|+||+||+|+
T Consensus 93 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~g~de~l~ld~-- 169 (279)
T cd01557 93 QLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDG-- 169 (279)
T ss_pred cCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHCCCCEEEEEcC--
Confidence 46776656788999999887655433356777765 567877756678997559999999999999999999999998
Q ss_pred C-eEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEE
Q 028415 86 K-RYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGS 164 (209)
Q Consensus 86 ~-g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~ 164 (209)
+ |+|+|++++|||++++++|+||+++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+|||++||+||++
T Consensus 170 ~~g~v~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~ 249 (279)
T cd01557 170 AHGYVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGE 249 (279)
T ss_pred CCCEEEEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEE
Confidence 7 999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeEEEcCCCCccHHHHHHHHHHHHHHhc
Q 028415 165 ITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMG 196 (209)
Q Consensus 165 i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g 196 (209)
| +++.+.++++++||++++|++.|.++++|
T Consensus 250 i--~~~~~~~~~~~~gp~~~~l~~~~~~~~~~ 279 (279)
T cd01557 250 I--DYRGKEPGEGEVGPVTKKLYDLLTDIQYG 279 (279)
T ss_pred E--ccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9 67754336778999999999999999876
No 11
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=2.3e-39 Score=281.00 Aligned_cols=185 Identities=30% Similarity=0.391 Sum_probs=160.7
Q ss_pred CCCcCCC--CCcEEEEEEEecCCcccCC-cccEEEEEeccccccCCCCC-CCCccccCHHHHHHHHHHHHHCCCCEEEEE
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYL 81 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~~A~~~g~de~lll 81 (209)
.+|+.++ .+|++++++.|++.+.... .+++++.++ .++|..|+.+ +.+||. ||+.+++++++|+++|+||+||+
T Consensus 100 ~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~r~~~~~~~~~~K~~-nyl~~vla~~ea~~~g~de~l~l 177 (299)
T PRK12479 100 DLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSV-ASRRNTPDALDPRIKSM-NYLNNVLVKIEAAQAGVLEALML 177 (299)
T ss_pred CCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEE-eEeccCCCccCccchhh-hhHHHHHHHHHHHHcCCCEEEEE
Confidence 5788765 4678999999875432111 134555554 3567766655 799996 99999999999999999999999
Q ss_pred cCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEE
Q 028415 82 DCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSP 161 (209)
Q Consensus 82 d~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~p 161 (209)
|+ +|+|+|++++|+|++++++|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+|
T Consensus 178 d~--~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~P 255 (299)
T PRK12479 178 NQ--QGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIP 255 (299)
T ss_pred cC--CCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEE
Confidence 98 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCc
Q 028415 162 VGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLI 198 (209)
Q Consensus 162 V~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~ 198 (209)
|++| |++.+ ++|++|+++++|+++|.+..++..
T Consensus 256 V~~i--d~~~~--~~~~~g~~~~~l~~~~~~~~~~~~ 288 (299)
T PRK12479 256 VVKV--DSREI--GDGKPGSVTKQLTEEFKKLTRERG 288 (299)
T ss_pred EEEE--CCEEc--CCCCcCHHHHHHHHHHHHHHhhcC
Confidence 9999 77876 788899999999999988777743
No 12
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=7.8e-39 Score=270.77 Aligned_cols=177 Identities=44% Similarity=0.719 Sum_probs=153.3
Q ss_pred CCCcCCC--CCcEEEEEEEecCCcccCCcccEEEEEecccccc-CCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEc
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRA-TPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLD 82 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~-~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld 82 (209)
.+|+.++ ..|++++++.|++++......++++.++.. .|. .++.++++||+ ||+.+++++++|+++|+||+|++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g~de~llld 154 (256)
T cd00449 77 GLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPD-RRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAGADEALLLD 154 (256)
T ss_pred ccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEeee-EEeCCCCCCccchhh-CCHHHHHHHHHHHHcCCCEEEEEC
Confidence 5677543 578999999988654111235677776643 443 45678999997 779999999999999999999999
Q ss_pred CccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEE
Q 028415 83 CVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPV 162 (209)
Q Consensus 83 ~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV 162 (209)
+ +|+|+|++++|+|++++++|+||+++.|+|+||||+.++++|++.|++++|+.++++||.+|||+|+|||++||+||
T Consensus 155 ~--~g~v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV 232 (256)
T cd00449 155 D--NGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPV 232 (256)
T ss_pred C--CCcEEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEE
Confidence 7 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEEEcCCCCccHHHHHHHHHH
Q 028415 163 GSITYLGKRVSYGEGGFGAVSQQLYSVL 190 (209)
Q Consensus 163 ~~i~~~~~~~~~~~g~~g~~t~~L~~~~ 190 (209)
++| +++.+ +++++||++++|+++|
T Consensus 233 ~~i--~~~~~--~~~~~~~~~~~l~~~~ 256 (256)
T cd00449 233 TEI--DGRGI--GDGKPGPVTRKLRELL 256 (256)
T ss_pred EEE--CCeec--CCCCCCHHHHHHHHhC
Confidence 999 67765 6678899999998865
No 13
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.6e-38 Score=274.18 Aligned_cols=183 Identities=33% Similarity=0.521 Sum_probs=156.1
Q ss_pred CCCCcCCC--CCcEEEEEEEecCCcccC-CcccEEEEEeccccccCCCCC-CCCccccCHHHHHHHHHHHHHCCCCEEEE
Q 028415 5 AVLGLAPA--PEYTFLIYVSPVGNYFKE-GIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLY 80 (209)
Q Consensus 5 ~~~G~~~~--~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~~A~~~g~de~ll 80 (209)
+.+|+.++ ..|.+++++.|.+++... -.+++++.+. .+.|..++.+ +++||+ ||+.+++++++|+++|+||+|+
T Consensus 98 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~r~~~~~~~~~~K~~-nyl~~v~a~~~A~~~g~de~L~ 175 (288)
T PRK08320 98 GDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITV-STRRNRPDALSPQVKSL-NYLNNILAKIEANLAGVDEAIM 175 (288)
T ss_pred CcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEE-eeeccCCCCcCccchhh-hhHHHHHHHHHHHHcCCCEEEE
Confidence 35788765 466788888876543221 0134444444 3467665555 789997 9999999999999999999999
Q ss_pred EcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeE
Q 028415 81 LDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVS 160 (209)
Q Consensus 81 ld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~ 160 (209)
+|+ +|+|+|++++|||++++|+|+|||++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+
T Consensus 176 ld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~gv~ 253 (288)
T PRK08320 176 LND--EGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFLTGTAAEVI 253 (288)
T ss_pred ECC--CCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHhCCEEEEecChhhEE
Confidence 998 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHh
Q 028415 161 PVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQM 195 (209)
Q Consensus 161 pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~ 195 (209)
||++| +++.+ ++|++|+++++|+++|.+...
T Consensus 254 pV~~i--~~~~~--~~~~~g~~~~~l~~~~~~~~~ 284 (288)
T PRK08320 254 PVVKV--DGRVI--GDGKPGPITKKLLEEFRELTK 284 (288)
T ss_pred EEEEE--CCEEC--CCCCcCHHHHHHHHHHHHHHh
Confidence 99999 67765 788899999999999977654
No 14
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=4.7e-38 Score=271.12 Aligned_cols=169 Identities=27% Similarity=0.385 Sum_probs=146.2
Q ss_pred CcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCC-CCCccccCHHHHHHHHHHHHHCCCCEEEEEcCccCeEEEee
Q 028415 14 EYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEV 92 (209)
Q Consensus 14 ~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~~g~v~E~ 92 (209)
.+.+++...+.+.... .++++.++ +++|..+..+ +++|+.+||+.+++|+++|+++|+||+||+|+ +|+|+|+
T Consensus 114 ~~~~~~~~~~~~~~~~---~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~g~deal~ld~--~G~v~E~ 187 (286)
T PRK13356 114 STRFALCLEEAPMPEP---TGFSLTLS-PFRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDM--LGNVAET 187 (286)
T ss_pred CceEEEEEEccCCCCC---CcEEEEEe-eeecCCCCCCCccceeccchHHHHHHHHHHHHcCCCEEEEECC--CCCEEEc
Confidence 4555666665543222 45677765 4677665544 67898779999999999999999999999998 8999999
Q ss_pred CceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEEEEECCeEE
Q 028415 93 SSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRV 172 (209)
Q Consensus 93 s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~i~~~~~~~ 172 (209)
+++|||++++++|+||+++.++|+||||+.|+++|++.|++|+|++++++||.+|||+|+|||++||+||++| |++.+
T Consensus 188 ~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~i--d~~~~ 265 (286)
T PRK13356 188 ATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRF--DDRSL 265 (286)
T ss_pred CceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEE--CCEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 78876
Q ss_pred EcCCCCccHHHHHHHHHHHHHHh
Q 028415 173 SYGEGGFGAVSQQLYSVLTQLQM 195 (209)
Q Consensus 173 ~~~~g~~g~~t~~L~~~~~~~~~ 195 (209)
+ +||++++|+++|.+...
T Consensus 266 --~---~g~~~~~l~~~~~~~~~ 283 (286)
T PRK13356 266 --Q---PGPVTRRARELYWDWAH 283 (286)
T ss_pred --c---CChHHHHHHHHHHHHHh
Confidence 3 58999999999976544
No 15
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=4.8e-38 Score=268.53 Aligned_cols=174 Identities=33% Similarity=0.445 Sum_probs=148.9
Q ss_pred CCCcCCC--CCcEEEEEEEecCCcccC-CcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEc
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFKE-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLD 82 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld 82 (209)
++|+.++ ..+++++++.|+++++.. ...++++.+++ .+|. ..+++||+ ||+.+++++++|+++|+||+||+|
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~-~~~~---~~~~~K~~-ny~~~~~a~~~a~~~g~de~l~ld 168 (270)
T cd01558 94 PRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVP-DIRW---LRCDIKSL-NLLNNVLAKQEAKEAGADEAILLD 168 (270)
T ss_pred ccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEec-cccc---CCCCchhh-ccHHHHHHHHHHHHcCCCEEEEEc
Confidence 4666553 467888888887643211 11356666553 3443 34689996 999999999999999999999999
Q ss_pred CccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEE
Q 028415 83 CVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPV 162 (209)
Q Consensus 83 ~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV 162 (209)
+ +|+|+|++++|||++++++|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||
T Consensus 169 ~--~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV 246 (270)
T cd01558 169 A--DGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPV 246 (270)
T ss_pred C--CCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEE
Confidence 8 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEEEcCCCCccHHHHHHHHHH
Q 028415 163 GSITYLGKRVSYGEGGFGAVSQQLYSVL 190 (209)
Q Consensus 163 ~~i~~~~~~~~~~~g~~g~~t~~L~~~~ 190 (209)
.+| +++.+ +++++||++++|++.|
T Consensus 247 ~~i--~~~~~--~~~~~~~~~~~l~~~~ 270 (270)
T cd01558 247 VEI--DGRPI--GDGKPGPVTKRLREAY 270 (270)
T ss_pred EEE--CCeEC--CCCCCCHHHHHHHHhC
Confidence 999 67765 7788999999998764
No 16
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=4.7e-38 Score=271.87 Aligned_cols=183 Identities=34% Similarity=0.500 Sum_probs=155.4
Q ss_pred CCCcCCC-CCcEEEEEEEecCCccc--CCcccEEEEEeccccccCCCCC-CCCccccCHHHHHHHHHHHHHCCCCEEEEE
Q 028415 6 VLGLAPA-PEYTFLIYVSPVGNYFK--EGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYL 81 (209)
Q Consensus 6 ~~G~~~~-~~~~~~i~~~p~~~~~~--~g~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~~A~~~g~de~lll 81 (209)
.+|+.++ ..+.+++...++++++. ...+++++.++ .++|..|..+ ..+|+.+||+.+++++++|+++|+||+||+
T Consensus 105 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~k~~~~yl~~vla~~~A~~~G~deal~l 183 (292)
T PRK07544 105 MMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALML 183 (292)
T ss_pred CCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcCCCCCcCHhhhhhcccHHHHHHHHHHHHcCCCeEEEE
Confidence 4677655 35667777776654332 23457777765 4677666554 466887789999999999999999999999
Q ss_pred cCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEE
Q 028415 82 DCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSP 161 (209)
Q Consensus 82 d~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~p 161 (209)
|+ +|+|+|++++|+|+++|++|+||+++ ++|+||||+.++++|+++|++|+|++++++||.+|||+|+|||++||+|
T Consensus 184 d~--~g~V~E~~~sNlf~v~~~~l~TP~~~-~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~P 260 (292)
T PRK07544 184 DY--RGYVAEATGANIFFVKDGVIHTPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTP 260 (292)
T ss_pred CC--CCCEEEcCceEEEEEECCEEECCCCc-ccccchhHHHHHHHHHHcCCeEEEEecCHHHHhhcCceeecCccceEEE
Confidence 98 89999999999999999999999986 5999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcC
Q 028415 162 VGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIA 199 (209)
Q Consensus 162 V~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~ 199 (209)
|++| +++.+ + +|+++++|+++|.+....+.+
T Consensus 261 V~~i--~~~~~--~---~g~~~~~l~~~~~~~~~~~~~ 291 (292)
T PRK07544 261 VSEI--GEYRF--T---PGAITRDLMDDYEALVRPRAA 291 (292)
T ss_pred EEEE--eeEEe--C---CChHHHHHHHHHHHHHhcccC
Confidence 9999 67765 3 589999999999888776653
No 17
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=269.51 Aligned_cols=179 Identities=22% Similarity=0.313 Sum_probs=148.1
Q ss_pred CCCcCCC--CCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcC
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDC 83 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~ 83 (209)
.+|+.++ ..|+++++..+.+.......+++++...+ ..++.++++||+ ||+.+++++++|++.|+||+|++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~Kt~-nyl~~vla~~ea~~~g~deaL~l~- 177 (290)
T PRK12400 104 ARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEP----DTRWLRCDIKSL-NLLPNILAATKAERKGCKEALFVR- 177 (290)
T ss_pred CCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECC----CCCccCCCCccc-ccHHHHHHHHHHHHcCCCEEEEEc-
Confidence 3566544 45677777665432111111344544322 123345789996 999999999999999999999996
Q ss_pred ccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEE
Q 028415 84 VHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVG 163 (209)
Q Consensus 84 ~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~ 163 (209)
+|+|+|++++|||++++++|+|||++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||+
T Consensus 178 --~g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~ 255 (290)
T PRK12400 178 --NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMT 255 (290)
T ss_pred --CCEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEcCCCCccHHHHHHHHHHHHHHhc
Q 028415 164 SITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMG 196 (209)
Q Consensus 164 ~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g 196 (209)
+| |++.+ ++|++||+|++|++.|.+.+..
T Consensus 256 ~i--~~~~~--~~~~~g~~t~~l~~~~~~~~~~ 284 (290)
T PRK12400 256 HL--DGTAI--QDGQVGPITKMLQRSFSQSLLQ 284 (290)
T ss_pred EE--CCEEC--CCCCcCHHHHHHHHHHHHHHHh
Confidence 99 67765 8889999999999999776543
No 18
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.2e-38 Score=269.22 Aligned_cols=186 Identities=44% Similarity=0.674 Sum_probs=161.2
Q ss_pred CCCCCCCcCCCCCcEEEEEEEecCCcccCCc--ccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEE
Q 028415 2 GSGAVLGLAPAPEYTFLIYVSPVGNYFKEGI--APINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVL 79 (209)
Q Consensus 2 g~~~~~G~~~~~~~~~~i~~~p~~~~~~~g~--~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~l 79 (209)
|.++.+|+.+...+.+.++++|+++++..+. .++.+.+++.+++..+++...+|++ ||+.+++++++|+++|+||+|
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~~-~y~~~~~a~~~A~~~G~~eal 173 (284)
T COG0115 95 GGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKTG-NYLSSVLAKREAKAAGADEAL 173 (284)
T ss_pred eecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhhhhc-ccHHHHHHHHHHHHCCCCEEE
Confidence 3345677777678899999999998876552 4555555434444444345678885 999999999999999999999
Q ss_pred EEcCccCeEEEeeCceEEEEEE-CCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCe
Q 028415 80 YLDCVHKRYLEEVSSCNIFVVK-GNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVV 158 (209)
Q Consensus 80 lld~~~~g~v~E~s~~Nlf~~~-~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~g 158 (209)
++|. +|+|+|++++|+|+++ ||+++||+++.++|+||||+.+|++|+++|++++|++++.+||..|||+|+|||+.+
T Consensus 174 ~~~~--~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~~adevf~t~t~~~ 251 (284)
T COG0115 174 LLDE--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAG 251 (284)
T ss_pred EecC--CCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHhhCCEEEEEccceE
Confidence 9998 8999999999999999 889999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcC
Q 028415 159 VSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGL 197 (209)
Q Consensus 159 i~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~ 197 (209)
|+||.+| +++ . +++||+|++|+++|.+++.|.
T Consensus 252 v~PV~~i--~~~-~----~~~gpit~~l~~~~~~~~~~~ 283 (284)
T COG0115 252 VTPVGLI--DGR-V----GQPGPVTKKLRELLTDIQYGE 283 (284)
T ss_pred EEEEEEE--CCc-c----CCCChHHHHHHHHHHHHhccC
Confidence 9999999 555 2 679999999999999999875
No 19
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=8.6e-38 Score=266.92 Aligned_cols=176 Identities=25% Similarity=0.337 Sum_probs=150.5
Q ss_pred CCCcCCC--CCcEEEEEEEecCCcccCC-cccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEc
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLD 82 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld 82 (209)
++|+.++ ..|.+++++.|++++.... .+++++.+++ .++..++.+.++||+ ||+.+++++++|+++|+||+|++|
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~~a~~~A~~~g~de~l~l~ 166 (268)
T PRK06092 89 GRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCP-TRLGRNPLLAGIKHL-NRLEQVLIRAELEQTEADEALVLD 166 (268)
T ss_pred CCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEec-cccCCCCCccCcchh-hhHHHHHHHHHHHhcCCCEEEEEC
Confidence 4666654 4668889888886543211 2466777653 344444457889996 999999999999999999999999
Q ss_pred CccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEE
Q 028415 83 CVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPV 162 (209)
Q Consensus 83 ~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV 162 (209)
+ +|+|+|++++|+|++++++|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||
T Consensus 167 ~--~g~v~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV 244 (268)
T PRK06092 167 S--EGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPV 244 (268)
T ss_pred C--CCCEEEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEE
Confidence 8 89999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEEEcCCCCccHHHHHHHHHHHH
Q 028415 163 GSITYLGKRVSYGEGGFGAVSQQLYSVLTQ 192 (209)
Q Consensus 163 ~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~ 192 (209)
.+| |++.+ + +||++++|++.+.+
T Consensus 245 ~~i--d~~~~--~---~g~~~~~l~~~~~~ 267 (268)
T PRK06092 245 RAI--GETSY--S---SGTLTRYLQPLCER 267 (268)
T ss_pred EEE--CCEEc--c---chHHHHHHHHHHhc
Confidence 999 77765 4 37999999998864
No 20
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=2.1e-37 Score=266.64 Aligned_cols=179 Identities=28% Similarity=0.427 Sum_probs=154.2
Q ss_pred CCCcCCC--CCcEEEEEEEecCCccc-CCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEc
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFK-EGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLD 82 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~-~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld 82 (209)
.+|+.++ ..|+++++..|+++... ....++.+ ..+|..++.++++||+ ||+.+++++++|+++|+||+||+|
T Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Kt~-~y~~~v~a~~~a~~~g~de~llln 170 (283)
T PRK07650 96 EIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVL----KQRRNTPEGAFRLKSH-HYLNNILGKREIGNDPNKEGIFLT 170 (283)
T ss_pred CCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEE----EEEecCCCCCcchhHH-hHHHHHHHHHHHHHcCCCeEEEEC
Confidence 4666554 46789999988754221 12223322 2456667778999996 999999999999999999999999
Q ss_pred CccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEE
Q 028415 83 CVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPV 162 (209)
Q Consensus 83 ~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV 162 (209)
+ +|+|+|++++|||++++|+|+||+++.|+|+||||+.++++|++.|++|+|+.++++||..|||+|+|||++||+||
T Consensus 171 ~--~G~v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV 248 (283)
T PRK07650 171 E--EGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPL 248 (283)
T ss_pred C--CCeEEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEE
Confidence 8 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhc
Q 028415 163 GSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMG 196 (209)
Q Consensus 163 ~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g 196 (209)
.+| +++.+ + |++||++++|+++|.+....
T Consensus 249 ~~i--~~~~~--~-g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 249 TRI--EERDF--P-GKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred EEE--CCEEe--C-CCCCHHHHHHHHHHHHHHHh
Confidence 999 77876 3 78999999999999876654
No 21
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=1.1e-37 Score=263.77 Aligned_cols=172 Identities=30% Similarity=0.471 Sum_probs=149.2
Q ss_pred CCCcCCC--CCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcC
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDC 83 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~ 83 (209)
.+|+.++ ..|++++++.|.+. ....+++++.++ +++|..++.++++||+ ||+.+++++++|+++|+||+|++|+
T Consensus 76 ~~~~~~~~~~~~~~~i~~~~~~~--~~~~~gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~de~l~l~~ 151 (249)
T cd01559 76 GRGYAPSVCPGPALYVSVIPLPP--AWRQDGVRLITC-PVRLGEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDT 151 (249)
T ss_pred CCCCCCCCCCCCEEEEEeccCCH--HHHhCCcEEEEc-ccccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCCEEEEEcC
Confidence 3566554 46788888888753 112245666665 3567667788999996 9999999999999999999999998
Q ss_pred ccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEE
Q 028415 84 VHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVG 163 (209)
Q Consensus 84 ~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~ 163 (209)
+|+|+|++++|+|++++++|+||+++.++|+||||+.++++|+++|++++|+.++++||.+|||+|+|||++||+||.
T Consensus 152 --~g~v~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~gi~pV~ 229 (249)
T cd01559 152 --DGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVT 229 (249)
T ss_pred --CCCEEEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCccceeEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEcCCCCccHHHHHHHHHH
Q 028415 164 SITYLGKRVSYGEGGFGAVSQQLYSVL 190 (209)
Q Consensus 164 ~i~~~~~~~~~~~g~~g~~t~~L~~~~ 190 (209)
+| |+ +++++||++++|+++|
T Consensus 230 ~i--d~-----~~~~~~~~~~~l~~~~ 249 (249)
T cd01559 230 AI--DD-----HDGPPGPLTRALRELL 249 (249)
T ss_pred EE--CC-----cccCccHHHHHHHHhC
Confidence 99 44 2356899999998875
No 22
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=5.1e-37 Score=270.32 Aligned_cols=181 Identities=24% Similarity=0.341 Sum_probs=152.4
Q ss_pred CCCcCCC--CCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcC
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDC 83 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~ 83 (209)
.+++.++ ..|++++++.|.+.... ...++++.+++ ++|. ++.++++||+ ||+.+++|+++|+++|+||+||+|+
T Consensus 137 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~gv~l~~~~-~~~~-~~~~~~~Kt~-nyl~~vla~~eA~~~G~deaLlln~ 212 (336)
T PLN02845 137 GFSLSPSGCSEPAFYAVVIEDTYAQD-RPEGVKVVTSS-VPIK-PPQFATVKSV-NYLPNALSQMEAEERGAFAGIWLDE 212 (336)
T ss_pred CCCCCCCCCCCCEEEEEEcccccccc-ccCCeEEEEee-eeec-CCccccchhh-hhHHHHHHHHHHHHcCCCEEEEECC
Confidence 4555443 46788888877542221 12456666653 4453 3456799996 9999999999999999999999998
Q ss_pred ccCeEEEeeCceEEEEEE-CCEEEecCCCCCcccCcHHHHHHHHHHHC---C--CcEEEEEcCHHHHhccceeEEEeccC
Q 028415 84 VHKRYLEEVSSCNIFVVK-GNVISTPAIKGTILPGITRKSIIDVAQSQ---G--FQVEERLVTVEELLDADEVFCTGTAV 157 (209)
Q Consensus 84 ~~~g~v~E~s~~Nlf~~~-~~~l~TP~~~~~~L~GitR~~vl~~a~~~---g--~~v~e~~i~~~el~~ade~fl~ns~~ 157 (209)
+|+|+|++++||||++ +++|+||+++ ++|+||||+.+|++|+++ | ++|+|+.++++||.+|||+|+|||++
T Consensus 213 --~G~V~Egt~sNiF~v~~~~~l~TP~l~-~iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdEvFltnS~~ 289 (336)
T PLN02845 213 --EGFVAEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGV 289 (336)
T ss_pred --CCcEEEcCcceEEEEEECCEEEeCCCC-CcCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCEEEEecCcc
Confidence 8999999999999885 9999999997 599999999999999986 8 89999999999999999999999999
Q ss_pred eeEEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcC
Q 028415 158 VVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGL 197 (209)
Q Consensus 158 gi~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~ 197 (209)
||+||++| |++.+ ++|++||+|++|++.|.+..++.
T Consensus 290 gv~PV~~i--d~~~~--~~g~~gp~t~~L~~~~~~~~~~~ 325 (336)
T PLN02845 290 PVLPIVSW--DGQPI--GDGKVGPITLALHDLLLDDMRSG 325 (336)
T ss_pred cEEEEEEE--CCEEC--CCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999 78865 88899999999999998877664
No 23
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.4e-36 Score=261.98 Aligned_cols=180 Identities=27% Similarity=0.365 Sum_probs=152.2
Q ss_pred CCCcCC-C--CCcEEEEEEEecCCcc-cC-CcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEE
Q 028415 6 VLGLAP-A--PEYTFLIYVSPVGNYF-KE-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLY 80 (209)
Q Consensus 6 ~~G~~~-~--~~~~~~i~~~p~~~~~-~~-g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~ll 80 (209)
.+|+.+ + ..|++++++.|++++. .. ..+++++.+.+ ..| +.++++||+ ||+.+++++++|+++|+||+|+
T Consensus 99 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~-~~~---~~~~~~Ks~-nyl~~vla~~eA~~~g~dd~l~ 173 (286)
T PRK06680 99 RRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVP-DNR---WKRCDIKSV-GLLPNVLAKQAAKEAGAQEAWM 173 (286)
T ss_pred CCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEec-CCC---CCCCCcchh-ccHHHHHHHHHHHHCCCCEEEE
Confidence 355543 2 4678999999876421 11 12355555442 223 345689997 9999999999999999999999
Q ss_pred EcCccCeEEEeeCceEEEEE-ECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCee
Q 028415 81 LDCVHKRYLEEVSSCNIFVV-KGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVV 159 (209)
Q Consensus 81 ld~~~~g~v~E~s~~Nlf~~-~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi 159 (209)
+| +|+|+|++++|+|++ ++++|+|||++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||
T Consensus 174 ld---~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~gi 250 (286)
T PRK06680 174 VD---DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFV 250 (286)
T ss_pred ec---CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcccE
Confidence 98 589999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcC
Q 028415 160 SPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGL 197 (209)
Q Consensus 160 ~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~ 197 (209)
+||.+| |++.+ +++++||++++|+++|.+..++.
T Consensus 251 ~pV~~i--d~~~~--~~~~~g~~~~~L~~~~~~~~~~~ 284 (286)
T PRK06680 251 FPVVQI--DGKQI--GNGKPGPIAKRLREAYEEFARLT 284 (286)
T ss_pred EEEEEE--CCEEC--CCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999 77765 77889999999999998876653
No 24
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=2.3e-36 Score=259.38 Aligned_cols=167 Identities=28% Similarity=0.367 Sum_probs=142.0
Q ss_pred CcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCccCeEEEeeC
Q 028415 14 EYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVS 93 (209)
Q Consensus 14 ~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~~g~v~E~s 93 (209)
.+.++++..|++..+.....++++.+... .| +..+++|+. ||+.+++++++|++.|+||+||++ +|+|+|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~gv~~~~~~~-~~---~~~~~~K~~-nyl~~vla~~eA~~~g~de~l~~~---~g~v~E~~ 178 (276)
T TIGR01121 107 KPVITAYTKEVPRPEENLEKGVKAITVED-IR---WLRCDIKSL-NLLGNVLAKQEAHEKGAYEAILHR---GGTVTEGS 178 (276)
T ss_pred CcEEEEEEecccCChhHHhcCeEEEEecC-CC---ccCCCcchh-hhHHHHHHHHHHHHcCCCEEEEec---CCeEEecC
Confidence 46777777776532211123455444322 23 234689996 999999999999999999999995 68999999
Q ss_pred ceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEEEEECCeEEE
Q 028415 94 SCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVS 173 (209)
Q Consensus 94 ~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~i~~~~~~~~ 173 (209)
++|||++++++|+|||++.++|+||||+.++++|++.|++++|++++++||.+|||+|+|||++||+||++| |++.+
T Consensus 179 ~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~i--d~~~~- 255 (276)
T TIGR01121 179 SSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEI--DGQQI- 255 (276)
T ss_pred ceeEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEEE--CCEEC-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 67755
Q ss_pred cCCCCccHHHHHHHHHHHH
Q 028415 174 YGEGGFGAVSQQLYSVLTQ 192 (209)
Q Consensus 174 ~~~g~~g~~t~~L~~~~~~ 192 (209)
++|++||++++|+++|.+
T Consensus 256 -~~~~~g~~~~~L~~~~~~ 273 (276)
T TIGR01121 256 -GDGKPGPWTRQLQKAFEE 273 (276)
T ss_pred -CCCCCCHHHHHHHHHHHH
Confidence 788899999999999865
No 25
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=4e-36 Score=260.00 Aligned_cols=171 Identities=22% Similarity=0.335 Sum_probs=146.5
Q ss_pred CcEEEEEEEecCCcccC-CcccEEEEEeccc-----cccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCccCe
Q 028415 14 EYTFLIYVSPVGNYFKE-GIAPINLVVEHEL-----HRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKR 87 (209)
Q Consensus 14 ~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~-----~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~~g 87 (209)
.|++++.+.|++..... ...++++.+++.. .+..|..++++||+ ||+++++++++|+++|+||+|++|. +|
T Consensus 112 ~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~--~G 188 (292)
T PRK07849 112 APTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAKTL-SYAVNMAALRYAARRGADDVIFTST--DG 188 (292)
T ss_pred CCeEEEEEeecCccchhhccCCeEEEEEeccccCcccccCcccccccchh-hhHHHHHHHHHHHHcCCCEEEEEcC--CC
Confidence 57788888887643211 1245666654321 12245567899996 9999999999999999999999998 89
Q ss_pred EEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEEEEE
Q 028415 88 YLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITY 167 (209)
Q Consensus 88 ~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~i~~ 167 (209)
+|+|++++||||++|++|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||.+|
T Consensus 189 ~v~E~s~~Nif~~~~g~l~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~~eL~~Adevfltns~~gi~pV~~i-- 266 (292)
T PRK07849 189 YVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTL-- 266 (292)
T ss_pred cEEECCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCHHHHhhCCEEEEecCcceEEEEEEE--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEcCCCCccHHHHHHHHHHHHHH
Q 028415 168 LGKRVSYGEGGFGAVSQQLYSVLTQLQ 194 (209)
Q Consensus 168 ~~~~~~~~~g~~g~~t~~L~~~~~~~~ 194 (209)
|++++ ++ |+++++|++.|.+..
T Consensus 267 d~~~~--~~---~~~~~~l~~~~~~~~ 288 (292)
T PRK07849 267 DGRPL--PR---DPLADELTELVDAAI 288 (292)
T ss_pred CCEEC--CC---ChHHHHHHHHHHHHh
Confidence 78875 54 699999999997654
No 26
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=1.8e-36 Score=257.70 Aligned_cols=170 Identities=26% Similarity=0.351 Sum_probs=145.0
Q ss_pred CCcCCC--CCcEEEEEEEecCCcccCC-cccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcC
Q 028415 7 LGLAPA--PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDC 83 (209)
Q Consensus 7 ~G~~~~--~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~ 83 (209)
+|+.++ ..+.+++++.|++.++... ..++++.+++ .++..++.++++||+ ||+.+++++++|+++|+||+|++|+
T Consensus 88 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~-~y~~~~~a~~~A~~~g~de~llln~ 165 (261)
T TIGR03461 88 RGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSP-VRLGRNPLLAGIKHL-NRLEQVLIKAELENSEADEALVLDT 165 (261)
T ss_pred CCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEec-cccCCCCCCcCcccc-ccHHHHHHHHHhhhcCCCEEEEECC
Confidence 455543 4567888888886544221 2456677653 444444467899996 9999999999999999999999998
Q ss_pred ccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEE
Q 028415 84 VHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVG 163 (209)
Q Consensus 84 ~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~ 163 (209)
+|+|+|++++|||+++|++|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||+
T Consensus 166 --~g~v~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~ 243 (261)
T TIGR03461 166 --DGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVN 243 (261)
T ss_pred --CCCEEEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEeCCccceEEEE
Confidence 899999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEcCCCCccHHHHHHH
Q 028415 164 SITYLGKRVSYGEGGFGAVSQQLY 187 (209)
Q Consensus 164 ~i~~~~~~~~~~~g~~g~~t~~L~ 187 (209)
+| |++.+ ++ ||++++|+
T Consensus 244 ~i--d~~~~--~~---~~~~~~l~ 260 (261)
T TIGR03461 244 AI--GETSY--PS---RTLTRLLQ 260 (261)
T ss_pred EE--CCEEe--cc---hHHHHHhh
Confidence 99 78876 43 68988874
No 27
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=253.59 Aligned_cols=168 Identities=19% Similarity=0.197 Sum_probs=142.8
Q ss_pred CCCcCCC-CCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCc
Q 028415 6 VLGLAPA-PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCV 84 (209)
Q Consensus 6 ~~G~~~~-~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~ 84 (209)
.+|+.+. ..+++++++.|.+++.. .++++.+++ +.|. ++++||. ||+.+++++++|+++|+||+|++|.
T Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~v~l~~~~-~~r~----~~~~K~~-~~l~~vla~~~a~~~g~de~l~ln~- 161 (266)
T PRK09266 92 DFRNPLADVAPDVLVATSPPADGPA---GPLRLQSVP-YERE----LPHIKHV-GTFGQLHLRRLAQRAGFDDALFVDP- 161 (266)
T ss_pred ccCCCCCCCCceEEEEEecCCcCCC---CCeEEEEEE-eccc----CCCCCCC-CcHHHHHHHHHHHHcCCCeEEEEcC-
Confidence 4565333 46788888887654332 345565553 4453 4579997 7888899999999999999999998
Q ss_pred cCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEE
Q 028415 85 HKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGS 164 (209)
Q Consensus 85 ~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~ 164 (209)
+|+|+|++++|||++++|+|+||+. ++|+||||+.++++|++.|++++|+.++++||.+|||+|+|||++||+||.+
T Consensus 162 -~g~v~E~~~sNlf~v~~~~l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~ 238 (266)
T PRK09266 162 -DGRVSEGATWNLGFWDGGAVVWPQA--PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSA 238 (266)
T ss_pred -CCcEEEcCceEEEEEECCEEECCCC--CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEE
Confidence 8999999999999999999999994 7999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeEEEcCCCCccHHHHHHHHHHHH
Q 028415 165 ITYLGKRVSYGEGGFGAVSQQLYSVLTQ 192 (209)
Q Consensus 165 i~~~~~~~~~~~g~~g~~t~~L~~~~~~ 192 (209)
| |++++ +++ ++++++|++.|.+
T Consensus 239 i--~~~~~--~~~--~~~~~~l~~~~~~ 260 (266)
T PRK09266 239 I--DDVAL--PDS--HALLELLRRAYEA 260 (266)
T ss_pred E--CCEEC--CCC--chHHHHHHHHHHh
Confidence 9 77865 543 7999999999954
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=4.6e-35 Score=243.71 Aligned_cols=131 Identities=38% Similarity=0.536 Sum_probs=118.4
Q ss_pred CCCCCccccCHHHHHH-HHHHHHHCCCCEEEEEcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHH
Q 028415 50 GTGGVKTIGNYAAVLK-AQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQ 128 (209)
Q Consensus 50 ~~~~~Kt~~~y~~~~~-a~~~A~~~g~de~llld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~ 128 (209)
+++++||+ ||+.+.+ +.++|++.|+||+|++|+ +|+|+|++++|||++++|+|+||+++.|+|+||||+.++++++
T Consensus 100 ~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~--~G~v~E~~~sNif~~~~~~~~TP~~~~giL~Gitr~~ll~~~~ 176 (231)
T PF01063_consen 100 PLPRHKTT-NRLANVLAALRAAREKGADEALLLDE--DGNVTEGSTSNIFFVKDGTLYTPPLDSGILPGITRQLLLELAK 176 (231)
T ss_dssp TSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEET--TSBEEEESSSEEEEEETTEEEEESGSSSSB--HHHHHHHHHHH
T ss_pred CCCCeeEC-CcchhhHHHHHHHHhcCcchhheecC--CCCcCCCCCcccccccCCEEEcCChhhhhccHHHHHHHHHHHH
Confidence 47899997 6666666 777778999999999998 8999999999999999999999999999999999999999999
Q ss_pred HCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEEEEECCeEEEcCCCCccHHHHHHHHHH
Q 028415 129 SQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVL 190 (209)
Q Consensus 129 ~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~ 190 (209)
++|++++|++++++||.+|||+|+|||++||+||.+| |++.+ + .||+|++|+++|
T Consensus 177 ~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i--~~~~~--~---~~p~~~~L~~~~ 231 (231)
T PF01063_consen 177 ELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSI--DGRSF--G---PGPITRRLQEAY 231 (231)
T ss_dssp HTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEE--TTEES--T---THHHHHHHHHHH
T ss_pred hCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEE--CCEEC--C---CCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 78875 4 799999999987
No 29
>PRK07546 hypothetical protein; Provisional
Probab=99.97 E-value=4.7e-31 Score=218.13 Aligned_cols=140 Identities=18% Similarity=0.231 Sum_probs=119.4
Q ss_pred cEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCccCeEEEeeCc
Q 028415 15 YTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSS 94 (209)
Q Consensus 15 ~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~~g~v~E~s~ 94 (209)
.++++.+.|+++.... .+.++.++ ..++..++++.++||+ ||+.+++++++|+++|+||+|++|+ +|+|+||++
T Consensus 69 g~~~i~~~p~~~~~~~--~~~~l~~~-~~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~--~G~v~E~s~ 142 (209)
T PRK07546 69 GRLTVETAPLPPLPPD--TVWRVAIA-RTRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNE--RGEVCEGTI 142 (209)
T ss_pred CCEEEEEecCCCCCCC--CcEEEEEc-CcccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECC--CCcEEEcCc
Confidence 4566777777542211 23445444 3355556677899996 9999999999999999999999998 899999999
Q ss_pred eEEEEEECCEEE-ecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEEE
Q 028415 95 CNIFVVKGNVIS-TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 165 (209)
Q Consensus 95 ~Nlf~~~~~~l~-TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~i 165 (209)
+|+||+++++|+ ||+++.|+|+||||+.+++. .+++|+.++++||.+|||+|+|||++||+||..|
T Consensus 143 ~Ni~~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 143 TNVFLDRGGGMLTTPPLSCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred eeEEEEECCEEEECCCCcCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 999999999999 99999999999999999985 6799999999999999999999999999999864
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.88 E-value=3.7e-22 Score=162.63 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=82.4
Q ss_pred CCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHC
Q 028415 51 TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQ 130 (209)
Q Consensus 51 ~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~ 130 (209)
..++||+ ++. .+....|++.|+||+|++| +|.|+||+++|||++++++|+||| .++|+||||+.+++.
T Consensus 92 ~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~---~G~v~E~~~sNi~~~~~~~~~TP~--~~~L~Gi~R~~ll~~---- 159 (187)
T PRK07101 92 DYSLKYT-DRS--ALNELFAQKGECDEIIIIK---NGLVTDTSIGNLAFFDGKQWFTPK--KPLLKGTQRARLLDE---- 159 (187)
T ss_pred ccccccC-CHH--HHHHHHHHhCCCCEEEEEc---CCEEEEccceEEEEEECCEEEcCC--CCCccHHHHHHHHcc----
Confidence 3479997 432 1223344678999999997 699999999999999999999999 489999999999983
Q ss_pred CCcEEEEEcCHHHHhccceeEEEeccCee
Q 028415 131 GFQVEERLVTVEELLDADEVFCTGTAVVV 159 (209)
Q Consensus 131 g~~v~e~~i~~~el~~ade~fl~ns~~gi 159 (209)
| +++|+.++++||.+|||+|+|||++|.
T Consensus 160 ~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 160 G-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 5 799999999999999999999999874
No 31
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=57.66 E-value=17 Score=25.03 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=33.6
Q ss_pred EEEEcCHHHHhccceeE-EE-eccCeeEEEEEEEECCeEEEcCCCCccHHHHHHHH
Q 028415 135 EERLVTVEELLDADEVF-CT-GTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYS 188 (209)
Q Consensus 135 ~e~~i~~~el~~ade~f-l~-ns~~gi~pV~~i~~~~~~~~~~~g~~g~~t~~L~~ 188 (209)
+||.++.++..+..-++ -| .++-.-.||.++.++|+.+.| .|..|-+.+.|.+
T Consensus 11 ~Er~~~fe~~~ef~~s~~~C~vtipD~~~V~svt~~G~~ldy-~G~~GdLY~~L~k 65 (72)
T PF15507_consen 11 QERTQTFEDYNEFMRSQSGCIVTIPDYYPVTSVTYNGQDLDY-QGTYGDLYFFLMK 65 (72)
T ss_pred eEEEEEeCCHHHHHHHhccCcccCCCceEEEEEEECCEEecc-ccchhHHHHHHHH
Confidence 45555555444432111 23 466788999999999999866 3566777666554
No 32
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=53.97 E-value=25 Score=24.71 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=27.3
Q ss_pred HHHHHHCCCcEE---------EEEcCHHHHhccceeEEEecc
Q 028415 124 IDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 156 (209)
Q Consensus 124 l~~a~~~g~~v~---------e~~i~~~el~~ade~fl~ns~ 156 (209)
-+.|+++|+++. +..++.+++..||-+++.+..
T Consensus 21 ~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 21 EKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 356777899887 667888999999999998875
No 33
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=50.42 E-value=31 Score=24.34 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCcEE---------EEEcCHHHHhccceeEEEecc
Q 028415 121 KSIIDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 156 (209)
Q Consensus 121 ~~vl~~a~~~g~~v~---------e~~i~~~el~~ade~fl~ns~ 156 (209)
+.+-+.|++.|+.+. +..++.+++..||-+++.+..
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 445567888998877 456888999999999998875
No 34
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=49.78 E-value=35 Score=24.40 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCcEE---------EEEcCHHHHhccceeEEEeccC
Q 028415 121 KSIIDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTAV 157 (209)
Q Consensus 121 ~~vl~~a~~~g~~v~---------e~~i~~~el~~ade~fl~ns~~ 157 (209)
+.+-+.|+++|+++. +..++.+++..||-+++++...
T Consensus 19 ~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 19 EALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred HHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 334467888999887 5567789999999999988763
No 35
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=41.57 E-value=33 Score=22.56 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=30.5
Q ss_pred CceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCC
Q 028415 93 SSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 131 (209)
Q Consensus 93 s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g 131 (209)
.-++++++.++..+--.+.+-+|-|+--...-++|.+.|
T Consensus 30 ~~~~f~ivi~~q~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 30 LESHFAIVIGEQSIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred cCCcEEEEECCeEEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 346777888888887777778889998888888887654
No 36
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=36.22 E-value=89 Score=23.76 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCcEEE---------EEcCHHHHhccceeEEEecc
Q 028415 121 KSIIDVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 156 (209)
Q Consensus 121 ~~vl~~a~~~g~~v~e---------~~i~~~el~~ade~fl~ns~ 156 (209)
+.|-..|+++|+.|+. -+++.+|+..||-+++..-.
T Consensus 22 eaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 22 EALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAADI 66 (122)
T ss_pred HHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEecc
Confidence 4455678889987754 46999999999999987653
No 37
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=34.86 E-value=77 Score=23.59 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHCCCcEE---------EEEcCHHHHhccceeEEEecc
Q 028415 124 IDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 156 (209)
Q Consensus 124 l~~a~~~g~~v~---------e~~i~~~el~~ade~fl~ns~ 156 (209)
-+.|++.|+++. +..++.+++..||-+++.+..
T Consensus 26 ~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 26 EKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDI 67 (114)
T ss_pred HHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 356777898887 456888999999999998875
No 38
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=33.58 E-value=51 Score=25.80 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCCEEEEEcCccCeEEEeeCceEEEE---EECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEE
Q 028415 65 KAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFV---VKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEE 136 (209)
Q Consensus 65 ~a~~~A~~~g~de~llld~~~~g~v~E~s~~Nlf~---~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e 136 (209)
.+...|++.|++-++.=.. -+...+....|+.- ..+-.+++|-. +++++-+.+++++.|+..--
T Consensus 94 ~~~~~A~~~g~~~I~~G~~--~~D~~~~~~~~l~~~~~~~~~~i~rPl~------~~~K~eI~~~a~~~gl~~~~ 160 (177)
T cd01712 94 IAEKLAEELGADAIVTGES--LGQVASQTLENLLVISSGTDLPILRPLI------GFDKEEIIGIARRIGTYDIS 160 (177)
T ss_pred HHHHHHHHcCCCEEEEccC--cccchHHHHHhhhhcccCCCCeEECCCC------CCCHHHHHHHHHHcCCccee
Confidence 4556788999975444222 23355555566553 23456787753 89999999999999975543
No 39
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=33.22 E-value=1.1e+02 Score=23.24 Aligned_cols=60 Identities=27% Similarity=0.448 Sum_probs=38.9
Q ss_pred cccCcHHHHHHHHHHHCCC-cEEEEE----cCHHHHhccceeEEEeccCe---------eEEEEEEEECCeEEEc
Q 028415 114 ILPGITRKSIIDVAQSQGF-QVEERL----VTVEELLDADEVFCTGTAVV---------VSPVGSITYLGKRVSY 174 (209)
Q Consensus 114 ~L~GitR~~vl~~a~~~g~-~v~e~~----i~~~el~~ade~fl~ns~~g---------i~pV~~i~~~~~~~~~ 174 (209)
.|.||.|+.+-++.+.. + .++-+. +++..+..-|-+|+|++... |.-|.+++...+++.+
T Consensus 5 aLTGIs~~vi~eL~~~~-~RTiEirSa~N~~~~~~~~~Gd~VFlT~~~~~Dl~~Gt~GiIa~V~~~~i~~qri~~ 78 (119)
T PF04322_consen 5 ALTGISRRVIDELKKNH-IRTIEIRSAHNVIALESLDPGDRVFLTSVSLEDLTPGTEGIIAEVKKIEISMQRIVW 78 (119)
T ss_pred EEeccCHHHHHHHHhCC-ceEEEEEcchheeeeecCCCCCEEEEecCCHHHCCCCCCeEEEEEEEEEEEEEEEee
Confidence 58999999988886653 3 233333 45566666799999987543 5566666544444444
No 40
>PRK06683 hypothetical protein; Provisional
Probab=31.97 E-value=70 Score=22.30 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCHHHHhcccee
Q 028415 119 TRKSIIDVAQSQGFQVEERLVTVEELLDADEV 150 (209)
Q Consensus 119 tR~~vl~~a~~~g~~v~e~~i~~~el~~ade~ 150 (209)
+++.+.++|+..++++..-. +..||..|-..
T Consensus 41 ~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A~G~ 71 (82)
T PRK06683 41 LTHVIIRTALQHNIPITKVE-SVRKLGKVAGI 71 (82)
T ss_pred HHHHHHHHHHhcCCCEEEEC-CHHHHHHHhCC
Confidence 88999999999999998888 99999987543
No 41
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=30.67 E-value=78 Score=21.99 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHCCCcEEEEEcCHHHHhccc
Q 028415 118 ITRKSIIDVAQSQGFQVEERLVTVEELLDAD 148 (209)
Q Consensus 118 itR~~vl~~a~~~g~~v~e~~i~~~el~~ad 148 (209)
-+++.+.++|++.++++.+-. +..||..|-
T Consensus 40 ~~~~~i~~~c~~~~Vp~~~~~-s~~eLG~a~ 69 (82)
T PRK13602 40 RLTEKVEALANEKGVPVSKVD-SMKKLGKAC 69 (82)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CHHHHHHHH
Confidence 489999999999999998877 889998864
No 42
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=30.32 E-value=1.8e+02 Score=19.80 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=32.0
Q ss_pred EEEecCCCCCc-ccCcHHH-HHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEEEEECCeEE
Q 028415 104 VISTPAIKGTI-LPGITRK-SIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRV 172 (209)
Q Consensus 104 ~l~TP~~~~~~-L~GitR~-~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~i~~~~~~~ 172 (209)
.+|+|+.++-+ ++.-.+. .+.-+++..|++.+-..+... -+ .+-.|-+|+-.+ ||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~kv~~~L~elglpye~~~~~~~-------~~--~~P~GkVP~L~~--dg~vI 61 (74)
T cd03079 2 ALYQPYEEEQILLPDNASCLAVQTFLKMCNLPFNVRCRANA-------EF--MSPSGKVPFIRV--GNQIV 61 (74)
T ss_pred ccccCCccCeeecCCCCCHHHHHHHHHHcCCCcEEEecCCc-------cc--cCCCCcccEEEE--CCEEE
Confidence 36777765333 3344442 344457778998766533211 11 112388998765 78766
No 43
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=27.72 E-value=52 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.3
Q ss_pred cccCcHHHHHHHHHHHCCCcEEEEEcCHHHHh
Q 028415 114 ILPGITRKSIIDVAQSQGFQVEERLVTVEELL 145 (209)
Q Consensus 114 ~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~ 145 (209)
-+.|++|.-.++++.+.|++ ...+.+||.
T Consensus 42 elag~s~~eF~~~L~~~gI~---~~~~~eel~ 70 (76)
T PF03683_consen 42 ELAGMSRWEFLELLKERGIP---INYDEEELE 70 (76)
T ss_pred HHhCCCHHHHHHHHHHCCCC---CCCCHHHHH
Confidence 47899999999999999987 337888775
No 44
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=27.55 E-value=77 Score=26.41 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=23.1
Q ss_pred HHHHHHHHHHCCCcEEEEEcCHHHHhc
Q 028415 120 RKSIIDVAQSQGFQVEERLVTVEELLD 146 (209)
Q Consensus 120 R~~vl~~a~~~g~~v~e~~i~~~el~~ 146 (209)
-..+++.|++.|+.|+++.++.+||..
T Consensus 92 V~~lF~~A~~~gi~V~~rsvs~~ei~~ 118 (212)
T PF09778_consen 92 VNRLFQKAKAAGINVEKRSVSIQEIIE 118 (212)
T ss_pred HHHHHHHHHHcCCceEEeeccHHHHHH
Confidence 356677889999999999999999875
No 45
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=27.42 E-value=42 Score=24.16 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=26.9
Q ss_pred cCcHHHHHHHHHHHCCCcEEEEEcCHHHHhcc
Q 028415 116 PGITRKSIIDVAQSQGFQVEERLVTVEELLDA 147 (209)
Q Consensus 116 ~GitR~~vl~~a~~~g~~v~e~~i~~~el~~a 147 (209)
.|=.-+.+++.|++.|++++|.+.-.+.|.+-
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~l 61 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPLLVELLLKL 61 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHhc
Confidence 56677899999999999999998877777653
No 46
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=24.52 E-value=1.2e+02 Score=21.17 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHCCCcEEEEEcCHHHHhccc
Q 028415 118 ITRKSIIDVAQSQGFQVEERLVTVEELLDAD 148 (209)
Q Consensus 118 itR~~vl~~a~~~g~~v~e~~i~~~el~~ad 148 (209)
=+++.+.++|+..++++ ....+..||..|-
T Consensus 37 ~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~ 66 (82)
T PRK13601 37 HVTKKIKELCEEKSIKI-VYIDTMKELGVMC 66 (82)
T ss_pred HHHHHHHHHHHhCCCCE-EEeCCHHHHHHHH
Confidence 57889999999999999 5778999998874
No 47
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=23.32 E-value=1.2e+02 Score=21.71 Aligned_cols=34 Identities=24% Similarity=0.064 Sum_probs=28.8
Q ss_pred cCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccce
Q 028415 116 PGITRKSIIDVAQSQGFQVEERLVTVEELLDADE 149 (209)
Q Consensus 116 ~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade 149 (209)
+--+++.+.++|++.++++.+-..+-+||..|-.
T Consensus 43 ~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~G 76 (99)
T PRK01018 43 PKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCG 76 (99)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhC
Confidence 4468899999999999999887789999998754
No 48
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=21.34 E-value=1.9e+02 Score=18.53 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=20.1
Q ss_pred HHHHHHHHHCCCCEEEEEcCccCeEEEee
Q 028415 64 LKAQSAAKAKGYSDVLYLDCVHKRYLEEV 92 (209)
Q Consensus 64 ~~a~~~A~~~g~de~llld~~~~g~v~E~ 92 (209)
-.|+..|++.+--+.++.+. ||.|.|-
T Consensus 33 ~~Ar~~a~~~~~~el~Ih~~--dG~i~~~ 59 (62)
T PF09954_consen 33 EAARELAKNQGGGELIIHGR--DGKIREE 59 (62)
T ss_pred HHHHHHHHhCCCcEEEEECC--CCeEEEe
Confidence 35666677775678888887 8999764
No 49
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=21.08 E-value=1.4e+02 Score=21.95 Aligned_cols=34 Identities=24% Similarity=0.053 Sum_probs=29.6
Q ss_pred cCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccce
Q 028415 116 PGITRKSIIDVAQSQGFQVEERLVTVEELLDADE 149 (209)
Q Consensus 116 ~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade 149 (209)
+.-|++.+.+.|+..++++..-..+-+||..|-.
T Consensus 52 ~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~G 85 (108)
T PTZ00106 52 PPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACG 85 (108)
T ss_pred CHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhC
Confidence 6678999999999999999887789999988743
Done!