Query 028415
Match_columns 209
No_of_seqs 185 out of 1447
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 18:28:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dtg_A Branched-chain amino ac 100.0 1.8E-48 6.3E-53 345.9 24.6 208 2-209 155-372 (372)
2 3dth_A Branched-chain amino ac 100.0 2.6E-48 8.9E-53 344.4 24.8 207 2-208 155-371 (372)
3 4dqn_A Putative branched-chain 100.0 1.1E-47 3.9E-52 337.7 23.7 205 3-208 136-343 (345)
4 3u0g_A Putative branched-chain 100.0 8.3E-46 2.8E-50 323.9 23.7 195 6-208 130-328 (328)
5 3uzo_A Branched-chain-amino-ac 100.0 2.7E-46 9.1E-51 330.4 20.7 204 3-208 151-358 (358)
6 2a1h_A Branched chain aminotra 100.0 3.9E-45 1.3E-49 323.8 23.5 202 3-208 149-365 (365)
7 2eiy_A ILVE, branched-chain am 100.0 9.2E-45 3.1E-49 314.4 25.2 196 5-208 105-305 (308)
8 1iye_A Branched-chain amino ac 100.0 6.2E-45 2.1E-49 315.5 24.1 197 5-208 106-307 (309)
9 2coi_A Branched chain aminotra 100.0 1.1E-44 3.9E-49 322.8 22.8 204 2-209 168-386 (386)
10 1i2k_A 4-amino-4-deoxychorisma 100.0 3E-40 1E-44 281.0 20.7 177 5-192 88-267 (269)
11 3daa_A D-amino acid aminotrans 100.0 7.6E-40 2.6E-44 280.1 20.8 175 7-193 98-275 (277)
12 2xpf_A 4-amino-4-deoxychorisma 100.0 5.9E-40 2E-44 282.6 20.1 178 6-194 110-290 (292)
13 3csw_A BCAT, putative branched 100.0 1E-39 3.5E-44 280.2 18.8 176 16-206 108-284 (285)
14 3lul_A 4-amino-4-deoxychorisma 100.0 1.1E-38 3.6E-43 272.3 19.6 172 6-196 96-269 (272)
15 3sno_A Hypothetical aminotrans 100.0 2.4E-37 8.3E-42 269.0 15.3 169 14-193 122-313 (315)
16 3qqm_A MLR3007 protein; struct 100.0 1.5E-32 5.3E-37 227.7 12.6 139 15-164 81-220 (221)
17 2zgi_A Putative 4-amino-4-deox 100.0 5.7E-32 1.9E-36 227.4 12.5 124 34-170 108-231 (246)
18 3ceb_A D-aminoacid aminotransf 99.9 1.1E-27 3.6E-32 194.5 9.9 100 47-159 95-194 (194)
19 2kyr_A Fructose-like phosphotr 49.8 21 0.00072 25.6 4.2 44 113-156 17-70 (111)
20 2r48_A Phosphotransferase syst 39.0 34 0.0012 24.2 3.9 44 113-156 14-67 (106)
21 3mcb_B Transcription factor BT 38.3 53 0.0018 20.7 4.3 43 73-119 5-55 (58)
22 2r4q_A Phosphotransferase syst 37.9 34 0.0011 24.3 3.7 45 112-156 13-67 (106)
23 3lkx_A Transcription factor BT 37.5 53 0.0018 21.2 4.3 43 74-120 6-56 (66)
24 2m1z_A LMO0427 protein; homolo 33.7 29 0.001 24.5 2.8 44 113-156 14-67 (106)
25 2l09_A ASR4154 protein; proto- 27.5 16 0.00054 23.5 0.4 35 113-151 18-52 (62)
26 2lqo_A Putative glutaredoxin R 26.6 27 0.00092 23.7 1.5 48 123-172 20-67 (92)
27 2fz5_A Flavodoxin; alpha/beta 25.3 1.3E+02 0.0046 20.5 5.3 42 116-157 10-57 (137)
28 2bmv_A Flavodoxin; electron tr 24.7 88 0.003 22.7 4.3 46 116-162 12-62 (164)
29 3tql_A Arginine-binding protei 23.0 94 0.0032 22.7 4.3 35 112-146 21-55 (227)
30 3h7m_A Sensor protein; histidi 22.0 87 0.003 23.1 3.9 36 111-146 29-64 (234)
31 4gvo_A LMO2349 protein; struct 20.0 93 0.0032 23.7 3.7 36 111-146 27-63 (243)
No 1
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=1.8e-48 Score=345.90 Aligned_cols=208 Identities=40% Similarity=0.717 Sum_probs=191.1
Q ss_pred CCCCCCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEE
Q 028415 2 GSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYL 81 (209)
Q Consensus 2 g~~~~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~lll 81 (209)
++++.+|+.|+..+.+++++.|..+++..+..+..+.+..++.|+.|......|..+||+++++++++|+++|+||+||+
T Consensus 155 ~~~~~lgv~p~~~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~G~deal~L 234 (372)
T 3dtg_A 155 ATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWL 234 (372)
T ss_dssp ECCCCCSCSCCSEEEEEEEEEEESCSSTTSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred eecCccCcCCCCCceeeeEecccccccccCcccceeecccceeecCcCCcchHHhcCCcchhhhHHHHHHhcCcchhhhh
Confidence 45567899888889999999999988877777777777777889999888888888899999999999999999999999
Q ss_pred cCccCeEEEeeCceEEEEE----ECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhcc------ceeE
Q 028415 82 DCVHKRYLEEVSSCNIFVV----KGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDA------DEVF 151 (209)
Q Consensus 82 d~~~~g~v~E~s~~Nlf~~----~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~a------de~f 151 (209)
|...+|+|+|++++|||+| ++|+|+|||++.++|+||||+.||++|+++|++|+|++++++||..| ||+|
T Consensus 235 d~~~~g~V~E~~~sNiF~V~~~~kdg~liTPpl~~~iL~GITR~sVi~LA~~~Gi~V~Er~it~~El~~A~~~~~~dEvF 314 (372)
T 3dtg_A 235 DAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVF 314 (372)
T ss_dssp CTTTSCBEEEETTEEEEEEESCGGGCEEEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEE
T ss_pred ccccccceeecCceEEEEEEecCCCceEEeCCccccccccHHHHHHHHHHHHCCceEEEEeCCHHHHHHHhhcCCCcEEE
Confidence 9544899999999999999 56799999999999999999999999999999999999999999998 9999
Q ss_pred EEeccCeeEEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeCC
Q 028415 152 CTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLELS 209 (209)
Q Consensus 152 l~ns~~gi~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~ 209 (209)
+|||+.+|.||.+|+..+..+.+++|++||+|++|+++|.+||+|+.+|+++|+..|.
T Consensus 315 ~tGTaa~I~PV~~Id~~~~~~~ig~G~~Gpvt~~L~~~~~~iq~G~~~d~~~W~~~v~ 372 (372)
T 3dtg_A 315 ACGTAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp EEETTTEEEEEEEEEETTEEEECTTSSCCHHHHHHHHHHHHHHTTSSCCTTCCEEECC
T ss_pred ECCCcceEEEEEEEecCCceEEcCCCCcCHHHHHHHHHHHHHHCCCCCCCCCCcEeCC
Confidence 9999999999999987677766799999999999999999999999999999999883
No 2
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=2.6e-48 Score=344.44 Aligned_cols=207 Identities=41% Similarity=0.727 Sum_probs=191.7
Q ss_pred CCCCCCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEE
Q 028415 2 GSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYL 81 (209)
Q Consensus 2 g~~~~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~lll 81 (209)
++++.+|+.|+..++++|+++|.++|+..|.+++++.+++++.|..|++++.+|+.+||+++++|+++|+++|+||+||+
T Consensus 155 ~~~~~~G~~p~~~~~~~i~~~p~~~y~~~g~~~v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~l 234 (372)
T 3dth_A 155 ATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWL 234 (372)
T ss_dssp ECCCCSSCSCCSEEEEEEEEEEESCSSSCSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEE
T ss_pred cCCCcCCcCCCCCeEEEEEEeeCchhhccCCccEEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEE
Confidence 44557899888889999999999988877888999988777889999999999996699999999999999999999999
Q ss_pred cCccCeEEEeeCceEEEEEECC----EEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhcc------ceeE
Q 028415 82 DCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDA------DEVF 151 (209)
Q Consensus 82 d~~~~g~v~E~s~~Nlf~~~~~----~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~a------de~f 151 (209)
|...+|+|+|++++|||+++++ +|+|||++.++|+||||+.||++|+++|++|+|++++++||.+| ||+|
T Consensus 235 d~~~~g~v~E~~~sNif~v~~~~~g~~l~TP~l~~~iL~GITR~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf 314 (372)
T 3dth_A 235 DAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVF 314 (372)
T ss_dssp CTTTSCBEEEETTEEEEEEESCGGGCEEEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEE
T ss_pred cCCCCCEEEEcCceeEEEEECCCCceEEEECCCCCCcCHHHHHHHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEE
Confidence 9634799999999999999998 99999999999999999999999999999999999999999998 9999
Q ss_pred EEeccCeeEEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 152 CTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 152 l~ns~~gi~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
+|||+.+|+||.+|+..++.+.+++|++||+|++|+++|.+||+|+.+|+++|+..|
T Consensus 315 ~tgTa~~i~PV~~Id~~~~~~~i~~g~~Gpvt~~L~~~l~~iq~g~~~d~~~W~~~v 371 (372)
T 3dth_A 315 ACGTAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARL 371 (372)
T ss_dssp EEETTTEEEEEEEEEETTEEEECTTSSCCHHHHHHHHHHHHHHHTSSCCTTCCEEEC
T ss_pred EecccceEEEEEEEccCCceEECCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCeEEC
Confidence 999999999999997655666678899999999999999999999999999999987
No 3
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=1.1e-47 Score=337.71 Aligned_cols=205 Identities=39% Similarity=0.622 Sum_probs=185.6
Q ss_pred CCCCCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEc
Q 028415 3 SGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLD 82 (209)
Q Consensus 3 ~~~~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld 82 (209)
.++.+|+.|+..++++|++.|+++++..+.+++++.+++++.|..|++++++||..||+++++|+++|+++|+||+||+|
T Consensus 136 ~~~~~g~~p~~~~~~~i~~~p~~~~~~~~~~gv~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld 215 (345)
T 4dqn_A 136 VGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLD 215 (345)
T ss_dssp ESCCCSSCCCSEEEEEEEEEEECCSCTTSCCCEEEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEEC
T ss_pred CCCccCCCCCCCeEEEEEEEECccccccCCCCEEEEEccceEecCCCccccccccccCHHHHHHHHHHHHCCCCEEEEEc
Confidence 34468888877889999999998887666678999988667899999999999955999999999999999999999999
Q ss_pred CccCeEEEeeCceEEEEE-ECCEEEecCCCCCcccCcHHHHHHHHHHH-CCCcEEEEEcCHHHHhccceeEEEeccCeeE
Q 028415 83 CVHKRYLEEVSSCNIFVV-KGNVISTPAIKGTILPGITRKSIIDVAQS-QGFQVEERLVTVEELLDADEVFCTGTAVVVS 160 (209)
Q Consensus 83 ~~~~g~v~E~s~~Nlf~~-~~~~l~TP~~~~~~L~GitR~~vl~~a~~-~g~~v~e~~i~~~el~~ade~fl~ns~~gi~ 160 (209)
.+++|+|+|++++|||++ +||+|+||| +.++|+||||+.+|++|++ +|++|+|++++++||..|||+|+|||+++|+
T Consensus 216 ~~~~g~v~E~~~sNif~v~~~g~l~TP~-~~~iL~GitR~~vl~la~~~~g~~v~e~~i~~~el~~adevf~t~t~~~i~ 294 (345)
T 4dqn_A 216 PATHTKIEEVGSANFFGITKDNEFITPL-SPSILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVIS 294 (345)
T ss_dssp TTTSCBEEEETTEEEEEEETTCEEEECC-CTTSCCCHHHHHHHHHHHHTTCCEEEECCCBTTCGGGEEEEEEEETTTEEE
T ss_pred CCCCCeEEEcCCceEEEEecCCEEEeCC-CCCccHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHhhhHHhhhcchhHEE
Confidence 622499999999999998 799999999 8999999999999999999 9999999999999999999999999999999
Q ss_pred EEEEEEECCeEEEcCCC-CccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 161 PVGSITYLGKRVSYGEG-GFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 161 pV~~i~~~~~~~~~~~g-~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
||.+|+..++.+.+++| ++||+|++|+++|.++++|+.+|+++|+..|
T Consensus 295 PV~~Id~~~~~~~i~~~~~~Gpvt~~L~~~~~~i~~g~~~~~~~W~~~v 343 (345)
T 4dqn_A 295 PIGGVQHGDDFHVFYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKV 343 (345)
T ss_dssp EEEEEEETTEEEESSCSSSCCHHHHHHHHHHHHHHTTSSCCCTTCEEET
T ss_pred EEEEECcccceeeeCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCceEC
Confidence 99999755555556765 6999999999999999999999999999987
No 4
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=8.3e-46 Score=323.92 Aligned_cols=195 Identities=30% Similarity=0.476 Sum_probs=174.7
Q ss_pred CCCcCCC-CCcEEEEEEEecCCcccCC--cccEEEEEeccccccCCCC-CCCCccccCHHHHHHHHHHHHHCCCCEEEEE
Q 028415 6 VLGLAPA-PEYTFLIYVSPVGNYFKEG--IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYL 81 (209)
Q Consensus 6 ~~G~~~~-~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~r~~~~~-~~~~Kt~~~y~~~~~a~~~A~~~g~de~lll 81 (209)
.+|+.|+ ..++++|++.|+++++... .+++++.++ ++.|..|++ ++++|+..||+++++|+++|+++|+||+|++
T Consensus 130 ~~g~~p~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~R~~~~~~~~~~K~t~nyl~~vla~~eA~~~G~~e~l~l 208 (328)
T 3u0g_A 130 KLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTS-SFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLL 208 (328)
T ss_dssp CCSTTCCCCCEEEEEEEEECC----HHHHHHCEEEEEC-SSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcCCCCCCcEEEEEEEEcCCCCChhhhcCCEEEEEe-eeeecCCCCcccchhhhhhhHHHHHHHHHHHHCCCCEEEEE
Confidence 5788765 4689999999988765321 257888876 467888877 6999954699999999999999999999999
Q ss_pred cCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEE
Q 028415 82 DCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSP 161 (209)
Q Consensus 82 d~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~p 161 (209)
|. +|+|+|++++|||+++||+|+|||++. +|+||||+.+|++|+++|++|+|++++++||..|||+|+|||++||+|
T Consensus 209 d~--~g~v~E~~~sNif~v~~g~l~TP~~~~-iL~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~adevf~tns~~~v~P 285 (328)
T 3u0g_A 209 DV--DGYVSEGSGENFFLVNRGKLYTPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTP 285 (328)
T ss_dssp CT--TSCEEEESSSEEEEEETTEEEECCSSS-SCCCHHHHHHHHHHHHTTCCEEECCCCHHHHHTCSEEEEEETTTEEEE
T ss_pred CC--CCcEEEcCceeEEEEECCEEEeCCccc-cchHHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEEcchhhEEE
Confidence 98 899999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 162 VGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 162 V~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
|++| |++.+ ++|++||+|++|+++|.++++|+.+|+++|+..|
T Consensus 286 V~~I--d~~~~--~~g~~g~vt~~L~~~~~~~~~g~~~~~~~W~~~v 328 (328)
T 3u0g_A 286 IREL--DNRTI--GGGARGPITEKLQSAFFDVVNGKSAKHADWLTKI 328 (328)
T ss_dssp EEEE--TTEEC--TTSSCCHHHHHHHHHHHHHHTTCCSTTGGGEEEC
T ss_pred EEEE--CCEEC--CCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceeC
Confidence 9999 78876 8889999999999999999999999999999886
No 5
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=2.7e-46 Score=330.35 Aligned_cols=204 Identities=34% Similarity=0.587 Sum_probs=183.4
Q ss_pred CCCCCCcCCCCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEc
Q 028415 3 SGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLD 82 (209)
Q Consensus 3 ~~~~~G~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld 82 (209)
+++.+|+.|+..++++|++.|.++++..|.+++++.+++ ++|..|++++++|+.+||+++++|+++|+++|+||+||+|
T Consensus 151 ~~~~~G~~p~~~~~~~i~~~P~~~~~~~g~~~v~l~~~~-~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld 229 (358)
T 3uzo_A 151 VGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTNFITSD-YDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLD 229 (358)
T ss_dssp ESSCCSSSCCSEEEEEEEEEEECCSSCSSSCCEEEECCS-CCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBC
T ss_pred cCCccccCCCCCeEEEEEEecChhhhhcCCccEEEEEEe-eeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEe
Confidence 345688888778899999999998887788889988874 7899999899999656999999999999999999999999
Q ss_pred CccCeEEEeeCceEEEEEE-CCE-EEecCCCCCcccCcHHHHHHHHHHH-CCCcEEEEEcCHHHHhccceeEEEeccCee
Q 028415 83 CVHKRYLEEVSSCNIFVVK-GNV-ISTPAIKGTILPGITRKSIIDVAQS-QGFQVEERLVTVEELLDADEVFCTGTAVVV 159 (209)
Q Consensus 83 ~~~~g~v~E~s~~Nlf~~~-~~~-l~TP~~~~~~L~GitR~~vl~~a~~-~g~~v~e~~i~~~el~~ade~fl~ns~~gi 159 (209)
.+.+|+|+|++++|||+++ ||+ |+||| +.++|+||||+.+|++|++ +|++|+|++++++||..|||+|+|||+.+|
T Consensus 230 ~~~~g~V~E~~~sNif~v~~dg~~l~TP~-~~~iL~GItR~~vl~la~~~~g~~v~e~~i~~~eL~~adEvf~t~t~~~i 308 (358)
T 3uzo_A 230 PATHTTIEEAGAANFFAITQDGQKFVTPQ-SPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVI 308 (358)
T ss_dssp TTTSCBBCBCSSSEEEEEETTSCEEEEEC-CTTSCCCHHHHHHHHHHHHTTCCEEEEECCBTTCGGGEEEEEEECTTTSS
T ss_pred CCCCCeEEEcCCeeEEEEECCCeEEEECC-cCCcccCHHHHHHHHHHHhhcCCeEEEEECCHHHHHhhcceeEEcCcceE
Confidence 7223999999999999995 688 99999 8899999999999999999 999999999999999999999999999999
Q ss_pred EEEEEEEECCeEEEcCC-CCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 160 SPVGSITYLGKRVSYGE-GGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 160 ~pV~~i~~~~~~~~~~~-g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
+||.+|+..++.+.+++ +++||+|++|+++|.++|+|+.+|+++|+..|
T Consensus 309 ~PV~~Id~~~~~~~i~~~~~~Gpvt~~L~~~~~~iq~g~~~~~~~W~~~v 358 (358)
T 3uzo_A 309 TPIGGIQHGDDFHVFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358 (358)
T ss_dssp EEEEEEEETTEEEESSCSSSCCHHHHHHHHHHHHHHTTSSCCCTTCCEEC
T ss_pred EEEEEECcccceeEeCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCceEC
Confidence 99999975555555554 46899999999999999999999999999886
No 6
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=3.9e-45 Score=323.85 Aligned_cols=202 Identities=34% Similarity=0.578 Sum_probs=182.7
Q ss_pred CCCCCCcCCCCCcEEEEEEEecCCcccCC-cccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEE
Q 028415 3 SGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYL 81 (209)
Q Consensus 3 ~~~~~G~~~~~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~lll 81 (209)
+++.+|+.|+..++++|++.|+++++..| .+++++.+++.+.|..|+.++++|+.+||+++++++++|+++|+||+||+
T Consensus 149 ~~~~~g~~p~~~~~~~i~~~p~~~~~~~g~~~~v~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l 228 (365)
T 2a1h_A 149 NEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWL 228 (365)
T ss_dssp CCBCCSCSCCSEEEEEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEE
T ss_pred cCCccCCCCCCCcEEEEEEEECccccccccccceEEEEccccccCCCCccchhchhhccHHHHHHHHHHHHcCCCeEEEE
Confidence 33568888777899999999999887766 67899988765678888889999995699999999999999999999999
Q ss_pred -cCccCeEEEeeCceEEEEEE---CCE--EEecCCCCCcccCcHHHHHHHHHHHC-CCcEEEEEcCHHHHhcc------c
Q 028415 82 -DCVHKRYLEEVSSCNIFVVK---GNV--ISTPAIKGTILPGITRKSIIDVAQSQ-GFQVEERLVTVEELLDA------D 148 (209)
Q Consensus 82 -d~~~~g~v~E~s~~Nlf~~~---~~~--l~TP~~~~~~L~GitR~~vl~~a~~~-g~~v~e~~i~~~el~~a------d 148 (209)
|. +|+|+|++++|||+++ ||+ |+|||++.++|+||||+.||++|+++ |++|+|+.++++||..| |
T Consensus 229 ~d~--~G~V~E~~~sNif~v~~~~dg~~~l~TP~l~~~iL~GITR~~vl~la~~~~G~~v~Er~i~~~eL~~A~~~g~~d 306 (365)
T 2a1h_A 229 YGP--DHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVR 306 (365)
T ss_dssp ETT--TTEEEEETTEEEEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEE
T ss_pred ECC--CCeEEEcCceEEEEEEecCCCcEEEEeCCCCCCccccHHHHHHHHHHHhcCCCceEEEeCCHHHHHHHHhcCCcc
Confidence 76 8999999999999996 665 99999999999999999999999995 99999999999999999 9
Q ss_pred eeEEEeccCeeEEEEEEEECCeEEEcC-CCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 149 EVFCTGTAVVVSPVGSITYLGKRVSYG-EGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 149 e~fl~ns~~gi~pV~~i~~~~~~~~~~-~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
|+|+|||+++|+||.+|+++++.+.++ +|++||+|++|+++|.++|+|+.+ ++|+..|
T Consensus 307 Evf~tnt~~~i~PV~~i~~~~~~~~~~~~g~~g~vt~~L~~~~~~~~~g~~~--~~W~~~v 365 (365)
T 2a1h_A 307 EVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRA--HEWMFPV 365 (365)
T ss_dssp EEEEEETTTEEEEEEEEEETTEEEECTTGGGTTHHHHHHHHHHHHHHTTSSC--CTTEEEC
T ss_pred EEEEcCCeeEEEEEEEEEeCCeEEeeCCCCCcCHHHHHHHHHHHHHHcCCCC--CCCeeeC
Confidence 999999999999999996658887665 577899999999999999999988 7999876
No 7
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=9.2e-45 Score=314.42 Aligned_cols=196 Identities=31% Similarity=0.405 Sum_probs=173.1
Q ss_pred CCCCcCCC--CCcEEEEEEEecCCcccCC--cccEEEEEeccccccCCCC-CCCCccccCHHHHHHHHHHHHHCCCCEEE
Q 028415 5 AVLGLAPA--PEYTFLIYVSPVGNYFKEG--IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVL 79 (209)
Q Consensus 5 ~~~G~~~~--~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~r~~~~~-~~~~Kt~~~y~~~~~a~~~A~~~g~de~l 79 (209)
+.+|+.|+ ..++++|.+.|+++++..+ .+++++.++ +++|..+.. ++++||++||+++++++++|+++|+||+|
T Consensus 105 ~~~~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~Kt~~ny~~~~la~~~A~~~G~de~l 183 (308)
T 2eiy_A 105 KALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITS-SWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEAL 183 (308)
T ss_dssp SCCSSCCGGGCSCEEEEEEEEC--------CCSCEEEEEC-SSCBCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEE
T ss_pred CccCcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEe-cceecCCCCcCcceehhhhHHHHHHHHHHHHHcCCCEEE
Confidence 35777764 5789999999988765332 357888776 467877764 48999986799999999999999999999
Q ss_pred EEcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCee
Q 028415 80 YLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVV 159 (209)
Q Consensus 80 lld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi 159 (209)
|+|. +|+|+|++++|||+++||+|+|||++. +|+||||+.+|++|+++|++|+|+.++++||..|||+|+|||++||
T Consensus 184 ~ld~--~G~V~Egs~sNif~v~~g~l~TP~~~~-iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv 260 (308)
T 2eiy_A 184 LLDE--EGYVAEGSGENLFFVRDGVIYALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEV 260 (308)
T ss_dssp EEBT--TSSEEEESSCEEEEEETTEEEEECCTT-SCCCHHHHHHHHHHHHTTCCEEEECCCHHHHHTCSEEEEEETTTEE
T ss_pred EECC--CCeEEEcCceEEEEEECCEEEeCCcCC-CCchHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEccCcceE
Confidence 9998 899999999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 160 SPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 160 ~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
+||.+| +++.+ ++|++||++++|+++|.++++|+.+++++|+..|
T Consensus 261 ~pV~~i--d~~~~--~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~v 305 (308)
T 2eiy_A 261 TPVSMI--DWRPI--GKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYV 305 (308)
T ss_dssp EEEEEE--TTEEC--TTSSCCHHHHHHHHHHHHHHTTCCGGGGGGEEEC
T ss_pred EEEEEE--cCEEC--CCCCCCHHHHHHHHHHHHHHcCCCCCccCCCeeC
Confidence 999999 78876 8888999999999999999999999999999987
No 8
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=6.2e-45 Score=315.49 Aligned_cols=197 Identities=35% Similarity=0.549 Sum_probs=178.0
Q ss_pred CCCCcCCC--CCcEEEEEEEecCCcccCC--cccEEEEEeccccccCCCC-CCCCccccCHHHHHHHHHHHHHCCCCEEE
Q 028415 5 AVLGLAPA--PEYTFLIYVSPVGNYFKEG--IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVL 79 (209)
Q Consensus 5 ~~~G~~~~--~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~r~~~~~-~~~~Kt~~~y~~~~~a~~~A~~~g~de~l 79 (209)
..+|+.|+ ..+++++.+.|+++++..+ .+++++.++ ++.|..++. ++++|++.||+++++++++|+++|+||+|
T Consensus 106 ~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~ny~~~~la~~~A~~~G~de~l 184 (309)
T 1iye_A 106 VGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS-SWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGI 184 (309)
T ss_dssp SCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEEC-SSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEE
T ss_pred CccCCCCCCCCCcEEEEEEEEcCccCCcccccCCeEEEEe-eeeccCCCCCCccccchhhhHHHHHHHHHHHHcCCCEEE
Confidence 35777754 4788999999988765433 257888776 467887765 48999866999999999999999999999
Q ss_pred EEcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCee
Q 028415 80 YLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVV 159 (209)
Q Consensus 80 lld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi 159 (209)
|+|. +|+|+|++++|||+++||+|+|||++.++|+||||+.+|++|+++|++|+|+.++++||..|||+|+|||++||
T Consensus 185 ~ld~--~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~eL~~adevfltns~~gv 262 (309)
T 1iye_A 185 ALDV--NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEI 262 (309)
T ss_dssp EECT--TSBEEEETTBEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBTTHHHHCSEEEEEETTTEE
T ss_pred EECC--CCcEEEcCceEEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCcEEEEccCCCEE
Confidence 9998 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeC
Q 028415 160 SPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 208 (209)
Q Consensus 160 ~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 208 (209)
+||.+| |++.+ ++|++||++++|+++|.++++|+.+++++|+..|
T Consensus 263 ~PV~~i--d~~~~--~~g~~g~~~~~l~~~~~~~~~g~~~~~~~w~~~v 307 (309)
T 1iye_A 263 TPVRSV--DGIQV--GEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQV 307 (309)
T ss_dssp EEEEEE--TTEEC--TTSSCCHHHHHHHHHHHGGGTTSSCCCSCCEEEC
T ss_pred EEEEEE--CCEEC--CCCCCCHHHHHHHHHHHHHHcCCCCccCCCCeEC
Confidence 999999 78876 8888999999999999999999999999999987
No 9
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=1.1e-44 Score=322.83 Aligned_cols=204 Identities=36% Similarity=0.606 Sum_probs=181.0
Q ss_pred CCCCCCCcCCCCCcEEEEEEEecCCcccCC-cccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEE
Q 028415 2 GSGAVLGLAPAPEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLY 80 (209)
Q Consensus 2 g~~~~~G~~~~~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~ll 80 (209)
|+++.+|+.|+.+++++|++.|.++|+..+ .+++++.+++.+.|..|.+++.+|+.+||+++++++++|+++|+||+||
T Consensus 168 ~~~~~~g~~p~~~~~~~i~~~p~~~y~~~~~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ 247 (386)
T 2coi_A 168 GTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLW 247 (386)
T ss_dssp ECCCSCSCSCCSEEEEEEEEEEECCCC-----CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEE
T ss_pred ecCCccccCCCCCcEEEEEEEECcccccccccccEEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEE
Confidence 455578998888899999999999887666 6788998876567888888889998569999999999999999999999
Q ss_pred Ec-CccCeEEEeeCceEEEEEE---CC--EEEecCCCCCcccCcHHHHHHHHHHH-CCCcEEEEEcCHHHHhcc------
Q 028415 81 LD-CVHKRYLEEVSSCNIFVVK---GN--VISTPAIKGTILPGITRKSIIDVAQS-QGFQVEERLVTVEELLDA------ 147 (209)
Q Consensus 81 ld-~~~~g~v~E~s~~Nlf~~~---~~--~l~TP~~~~~~L~GitR~~vl~~a~~-~g~~v~e~~i~~~el~~a------ 147 (209)
+| . +|+|+|++++|||+++ || +|+|||++.++|+||||+.||++|++ .|++|+|++++++||.+|
T Consensus 248 ld~~--~g~V~E~~~sNiF~v~~~~~g~~~l~TP~l~~~iL~GITR~~vl~la~~~~G~~V~Er~i~~~eL~~A~~~g~~ 325 (386)
T 2coi_A 248 LYGE--DHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRV 325 (386)
T ss_dssp EETT--TTEEEEETTEEEEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHCSSEEEECCCBHHHHHHHHTTTCE
T ss_pred EECC--CCEEEEeCCceEEEEEEcCCCCEEEEECCCCCCccHHHHHHHHHHHHHhccCCcEEEEECCHHHHHHHHhcCCc
Confidence 99 6 8999999999999997 88 99999999999999999999999999 799999999999999999
Q ss_pred ceeEEEeccCeeEEEEEEEECCeEEEcC-CCCccHHHHHHHHHHHHHHhcCcCCCCCCeeeCC
Q 028415 148 DEVFCTGTAVVVSPVGSITYLGKRVSYG-EGGFGAVSQQLYSVLTQLQMGLIADKMNWTLELS 209 (209)
Q Consensus 148 de~fl~ns~~gi~pV~~i~~~~~~~~~~-~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~ 209 (209)
||+|+|||+.+|+||.+|++.++.+.++ +|++||+|++|+++|.++|+|+.+ ++|+..|+
T Consensus 326 dEvF~tgTa~~i~PV~~I~~~~~~~~~~~~g~~g~vt~~L~~~l~~iq~g~~~--~~W~~~v~ 386 (386)
T 2coi_A 326 REMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREE--RDWTIVLS 386 (386)
T ss_dssp EEEEEEETTTEEEEEEEEEESSSEEECGGGGGTTHHHHHHHHHHHHHHTTSSC--CTTEEEC-
T ss_pred cEEEEecceeEEEEEEEEeeCCeEEecCCCCCcCHHHHHHHHHHHHHhCCCCC--CCCeEeCC
Confidence 9999999999999999996658887554 466899999999999999999987 59999884
No 10
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=3e-40 Score=281.05 Aligned_cols=177 Identities=21% Similarity=0.271 Sum_probs=156.9
Q ss_pred CCCCcCCC--CCcEEEEEEEecCCcccC-CcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEE
Q 028415 5 AVLGLAPA--PEYTFLIYVSPVGNYFKE-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYL 81 (209)
Q Consensus 5 ~~~G~~~~--~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~lll 81 (209)
+++|+.|+ ..|++++.+.|+++++.. ..+++++.++ +.+|..++.++++||+ ||+.+++++++|+++|+||+||+
T Consensus 88 ~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~Kt~-n~~~~~~a~~~A~~~G~de~l~l 165 (269)
T 1i2k_A 88 GGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNPHLAGIKHL-NRLEQVLIRSHLEQTNADEALVL 165 (269)
T ss_dssp CCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEEC-SCCBCCCTTTTBCCBS-CCHHHHHHHHHHTTSSCSEEEEE
T ss_pred CCCCCCCccCCCcEEEEEEEECCCcchhhhcCCeEEEEe-ceecCCCCcccCcchh-hhHHHHHHHHHHHHCCCCEEEEE
Confidence 35788765 578999999999875421 2246777776 4567666678999996 99999999999999999999999
Q ss_pred cCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEE
Q 028415 82 DCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSP 161 (209)
Q Consensus 82 d~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~p 161 (209)
|. +|+|+|++++|||+++||+|+|||++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+|||++||+|
T Consensus 166 d~--~G~v~E~s~sNif~v~~g~l~TP~~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gv~p 243 (269)
T 1i2k_A 166 DS--EGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMP 243 (269)
T ss_dssp BT--TSBEEECSSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHHSSSEEEEECCBHHHHHTCSEEEEECSSSCEEE
T ss_pred CC--CCcEEEcCceEEEEEECCEEECCCCccCccCCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEcCChhheEE
Confidence 98 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCeEEEcCCCCccHHHHHHHHHHHH
Q 028415 162 VGSITYLGKRVSYGEGGFGAVSQQLYSVLTQ 192 (209)
Q Consensus 162 V~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~ 192 (209)
|.+| +++.+ ++ ||++++|+++|..
T Consensus 244 V~~i--d~~~~--~~---g~~~~~l~~~~~~ 267 (269)
T 1i2k_A 244 VCAC--GDVSF--SS---ATLYEYLAPLCER 267 (269)
T ss_dssp EEEE--TTEEC--CC---CHHHHHHHHHHHT
T ss_pred EEEE--CCEEe--cC---cHHHHHHHHHHhc
Confidence 9999 78876 54 7999999999863
No 11
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=7.6e-40 Score=280.09 Aligned_cols=175 Identities=23% Similarity=0.281 Sum_probs=152.6
Q ss_pred CCcCC---CCCcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcC
Q 028415 7 LGLAP---APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDC 83 (209)
Q Consensus 7 ~G~~~---~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~ 83 (209)
+|+.+ +.+|++++++.|++.+.....+++++.++++ .| +.++++||+ ||+++++|+++|+++|+||+||+|
T Consensus 98 r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~-~r---~~~~~~Kt~-nyl~~~la~~eA~~~g~~e~l~l~- 171 (277)
T 3daa_A 98 RAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVED-IR---WLRCDIKSL-NLLGAVLAKQEAHEKGCYEAILHR- 171 (277)
T ss_dssp CCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEEC-CC---CSCTTSCBS-CCHHHHHHHHHHHHTTCSEEEEEE-
T ss_pred cCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEecC-cc---ccCCCcchh-hhHHHHHHHHHHHHCCCCEEEEEc-
Confidence 55543 3578999999999853221124566666543 23 346899996 999999999999999999999996
Q ss_pred ccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEE
Q 028415 84 VHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVG 163 (209)
Q Consensus 84 ~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~ 163 (209)
+|+|+|++++|+|+++||+|+|||++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+|||++||+||.
T Consensus 172 --~g~v~E~~~sNif~~~~~~l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~e~~i~~~el~~adevf~~ns~~~i~pV~ 249 (277)
T 3daa_A 172 --NNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVI 249 (277)
T ss_dssp --TTEEEEETTBEEEEEETTEEEECCSSTTSCCCHHHHHHHHHHHHTTCCEECCCCBHHHHHTCSEEEEEETTTEEEEEE
T ss_pred --CCEEEEcCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCeEEEEeCCHHHHHhcCeeeeecChhhEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEcCCCCccHHHHHHHHHHHHH
Q 028415 164 SITYLGKRVSYGEGGFGAVSQQLYSVLTQL 193 (209)
Q Consensus 164 ~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~ 193 (209)
+| |++.+ ++|++||+|++|+++|.+.
T Consensus 250 ~i--d~~~~--~~g~~g~~t~~L~~~~~~~ 275 (277)
T 3daa_A 250 EI--DGKLI--RDGKVGEWTRKLQKQFETK 275 (277)
T ss_dssp EE--TTEES--TTSSCCHHHHHHHHHHHTT
T ss_pred EE--CCEEC--CCCCcCHHHHHHHHHHHHh
Confidence 99 78865 8888999999999999764
No 12
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=5.9e-40 Score=282.63 Aligned_cols=178 Identities=21% Similarity=0.262 Sum_probs=157.1
Q ss_pred CCCcCCC--CCcEEEEEEEecCCcccC-CcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEc
Q 028415 6 VLGLAPA--PEYTFLIYVSPVGNYFKE-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLD 82 (209)
Q Consensus 6 ~~G~~~~--~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld 82 (209)
.+|+.|+ ..|++++.+.|++.++.. ..+++++.+++ .+|..++.++++||+ ||+.+++++++|+++|+||+|++|
T Consensus 110 ~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~la~~~A~~~G~de~L~ld 187 (292)
T 2xpf_A 110 LRGYAPPAEASPRRILSGSPRPAYPERHWQQGVRLFACR-TRLAEQPLLAGLKHL-NRLEQVLARAEWSDAGHAEGLMLD 187 (292)
T ss_dssp CSSSSCCTTCCCEEEEEEECCCCCCHHHHHTCEEEEECC-CCBCCCTTTTBCCBS-CCHHHHHHHTTCCCTTCSEEEEEB
T ss_pred CCCCCCCCCCCcEEEEEEEECCccchhhccCCeEEEEee-eeccCCCCCCCcchh-hhHHHHHHHHHHHHcCCCEEEEEC
Confidence 5788765 478999999999875521 12467777764 456555567899996 999999999999999999999999
Q ss_pred CccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEE
Q 028415 83 CVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPV 162 (209)
Q Consensus 83 ~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV 162 (209)
. +|+|+|++++|||+++||+|+|||++.++|+||||+.+|++|+++|++|+|++++++||.+|||+|+|||++||+||
T Consensus 188 ~--~G~V~Egs~sNif~v~~g~l~TPpl~~~iL~GitR~~vl~~a~~~G~~v~E~~i~~~eL~~adevfltns~~gv~PV 265 (292)
T 2xpf_A 188 V--HERVVEGVFSNLLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPV 265 (292)
T ss_dssp T--TCCEEEESSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHHTTCCEEEECBCHHHHHTCSEEEEEETTTEEEEE
T ss_pred C--CCCEEEcCCeEEEEEECCEEEeCCCCCccCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCEEEEEcCcccEEEE
Confidence 8 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEEEcCCCCccHHHHHHHHHHHHHH
Q 028415 163 GSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQ 194 (209)
Q Consensus 163 ~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~ 194 (209)
.+| |++.+ + +||+|++|+++|.+..
T Consensus 266 ~~i--d~~~~--~---~g~~t~~l~~~~~~~~ 290 (292)
T 2xpf_A 266 RAL--DEHVW--P---VGELTRKLQDQLRDDL 290 (292)
T ss_dssp EEE--TTEEC--C---CCHHHHHHHHHHHHHH
T ss_pred EEE--CCEEe--C---CCHHHHHHHHHHHHHh
Confidence 999 78876 4 5899999999998654
No 13
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1e-39 Score=280.22 Aligned_cols=176 Identities=28% Similarity=0.342 Sum_probs=155.4
Q ss_pred EEEEEEEecCCcccCCcccEEEEEeccccccCCC-CCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCccCeEEEeeCc
Q 028415 16 TFLIYVSPVGNYFKEGIAPINLVVEHELHRATPG-GTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSS 94 (209)
Q Consensus 16 ~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~-~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~~g~v~E~s~ 94 (209)
++++.+.|+++++ ...++++.+++ .+|..+. .+.++||+ ||+++++++++|++ +||+|++|. +|+|+|+++
T Consensus 108 ~~~i~~~p~~~~~--~~~~~~l~~~~-~~~~~~~~~~~~~Kt~-~~l~~~la~~~A~~--~de~L~ld~--~G~V~Egs~ 179 (285)
T 3csw_A 108 EVLFVFSPLNIPD--LETGVEVKISN-VRRIPDLSTPPALKIT-GRTDIVLARREIVD--CYDVILLGL--NGQVCEGSF 179 (285)
T ss_dssp CEEEEEEECCCCC--CTTCEEEEECS-SCCCCTTTSCTTCCBT-TCHHHHHHHTTCSS--SSEEEEECT--TSBEEEESS
T ss_pred EEEEEEEeCCCcc--ccCCeEEEEEe-EEecCCCCCCCccchh-ccHHHHHHHHHHHh--CCeEEEECC--CCcEEEcCc
Confidence 6888899987654 22457777653 4443332 34799997 69999999988876 999999998 899999999
Q ss_pred eEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEEEEECCeEEEc
Q 028415 95 CNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSY 174 (209)
Q Consensus 95 ~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~i~~~~~~~~~ 174 (209)
+|||+++||+|+|||++.++|+||||+.++++|+++|++++|++++++||.+|||+|+|||++||+||.+| +++.+
T Consensus 180 sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~PV~~i--d~~~~-- 255 (285)
T 3csw_A 180 SNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAGVVPVRRL--NEHSF-- 255 (285)
T ss_dssp SEEEEEETTEEEEECGGGTCCCCHHHHHHHHHHHHTTCCEEEECCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEES--
T ss_pred eEEEEEECCEEEeCCCCCCccCCHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEecCcceEEEEEEE--CCEEC--
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 78875
Q ss_pred CCCCccHHHHHHHHHHHHHHhcCcCCCCCCee
Q 028415 175 GEGGFGAVSQQLYSVLTQLQMGLIADKMNWTL 206 (209)
Q Consensus 175 ~~g~~g~~t~~L~~~~~~~~~g~~~~~~~w~~ 206 (209)
++|++||++++|+++|.++++|+. ++|+.
T Consensus 256 ~~g~~g~~t~~L~~~~~~~~~~~~---~~w~~ 284 (285)
T 3csw_A 256 FEEEPGPVTATLMENFEPFVLNLE---ENWVG 284 (285)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHTCG---GGTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHhCcC---CCCCC
Confidence 888899999999999999999987 68874
No 14
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=1.1e-38 Score=272.27 Aligned_cols=172 Identities=26% Similarity=0.325 Sum_probs=150.1
Q ss_pred CCCcCCCC--CcEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcC
Q 028415 6 VLGLAPAP--EYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDC 83 (209)
Q Consensus 6 ~~G~~~~~--~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~ 83 (209)
.+|+.++. .|+++++ .|+++. ..++++.++ +++|..+++++++||+ ||+++++++++|+++|+||+|++|.
T Consensus 96 ~~g~~~~~~~~~~~~~~-~p~~~~----~~~v~l~~~-~~~r~~~~~~~~~Kt~-nyl~~~la~~~A~~~G~de~L~ld~ 168 (272)
T 3lul_A 96 SRGLAERGQVSQLIFQT-FNYSIQ----KHPVRLISI-NWLRDKANPLYQLKSV-NYLEAIIAQRQAIAVGADDALFFNT 168 (272)
T ss_dssp CSSTTCCCSSEEEEEEE-ECCCCC----CSCEEEEEE-EEEECTTCGGGGSCBS-CCHHHHHHHHHHHHTTCSEEEEEET
T ss_pred ccCcCCCCCCCcEEEEE-ECCCCc----cccEEEEEE-eEEecCCCcccchhhh-ccHHHHHHHHHHHHcCCCEEEEECC
Confidence 57887653 4677766 555321 124777665 5788877788999996 9999999999999999999999998
Q ss_pred ccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEE
Q 028415 84 VHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVG 163 (209)
Q Consensus 84 ~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~ 163 (209)
+|+|+|++++|||+++||+|+|||++.++|+||||+.++++|++.|++|+|++++++||..|||+|+|||++||+||.
T Consensus 169 --~g~v~E~~~sNif~~~~g~l~TP~l~~~iL~GitR~~ll~la~~~g~~v~e~~i~~~el~~adevf~~ns~~~v~PV~ 246 (272)
T 3lul_A 169 --ENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQGIRRVL 246 (272)
T ss_dssp --TSBEEEESSCEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBHHHHHTCSEEEEEETTTEEEEEE
T ss_pred --CCeEEEcCCeEEEEEECCEEECCCCccCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEEcCchhEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEcCCCCccHHHHHHHHHHHHHHhc
Q 028415 164 SITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMG 196 (209)
Q Consensus 164 ~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~~~g 196 (209)
+| |++.+ ++ |++|+++|.+....
T Consensus 247 ~i--d~~~~--~~------t~~l~~~y~~~~~~ 269 (272)
T 3lul_A 247 SL--DNIIF--EV------NHPIIDKLIFLLNQ 269 (272)
T ss_dssp EE--TTEEC--CC------CCHHHHHHHHHHHH
T ss_pred EE--CCEEc--ch------HHHHHHHHHHHHhh
Confidence 99 88876 43 78899988876543
No 15
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=2.4e-37 Score=268.98 Aligned_cols=169 Identities=24% Similarity=0.369 Sum_probs=115.1
Q ss_pred CcEEEEEEEecCCcccC-CcccEEEEEeccc----------------------cccCCCCCCCCccccCHHHHHHHHHHH
Q 028415 14 EYTFLIYVSPVGNYFKE-GIAPINLVVEHEL----------------------HRATPGGTGGVKTIGNYAAVLKAQSAA 70 (209)
Q Consensus 14 ~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~----------------------~r~~~~~~~~~Kt~~~y~~~~~a~~~A 70 (209)
.|++++++.|++.++.. ..+++++.+++.. .|..|+.++++||+ ||+++++|+++|
T Consensus 122 ~p~~~v~~~p~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~~~~~p~~l~~~Kt~-nyl~~vla~~~A 200 (315)
T 3sno_A 122 LASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYA 200 (315)
T ss_dssp CCEEEEEEEECCHHHHHHHHHCEEEEEEEC--------------------------------------------------
T ss_pred CCEEEEEEEECCCcchhhhcCCEEEEEeccccccccccccccccccccccccccccCcccccCcchh-ccHHHHHHHHHH
Confidence 47899999998754421 1135555554310 12345567899997 999999999999
Q ss_pred HHCCCCEEEEEcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhcccee
Q 028415 71 KAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEV 150 (209)
Q Consensus 71 ~~~g~de~llld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~ 150 (209)
+++|+||+||+|. +| |+|++++|+|+++||+|+|||++.++|+||||+.++++|+++|++++|+.++++||.+|||+
T Consensus 201 ~~~G~de~l~l~~--~G-v~E~s~sN~f~~~~g~l~TPp~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adev 277 (315)
T 3sno_A 201 KSNGFDDVIFTDG--DR-VLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSV 277 (315)
T ss_dssp ----CEEEEEEET--TE-EEEESSSEEEEEETTEEEEECCC------HHHHHHHHHHHHTTCEEEEECCBHHHHHHSSEE
T ss_pred HHcCCCEEEEEeC--CC-cEEcCCeeEEEEECCEEEcCCCCCCcChhHHHHHHHHHHHHcCCEEEEEECCHHHHHhCCee
Confidence 9999999999998 89 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCeeEEEEEEEECCeEEEcCCCCccHHHHHHHHHHHHH
Q 028415 151 FCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQL 193 (209)
Q Consensus 151 fl~ns~~gi~pV~~i~~~~~~~~~~~g~~g~~t~~L~~~~~~~ 193 (209)
|+|||++||+||++| |++.+ + .++++++|+++|.+.
T Consensus 278 fl~ns~~gv~pV~~i--d~~~~--~---~~~~~~~l~~~~~~~ 313 (315)
T 3sno_A 278 WLVSSVRGPVRVTRL--DGHKL--R---KPDNEKEIKALITKA 313 (315)
T ss_dssp EEEETTTEEEEEEEE--SSSCC--C---CCTTHHHHHHHHHHH
T ss_pred EEEcCcccEEEEEEE--CCEEC--C---CChHHHHHHHHHHHh
Confidence 999999999999999 78876 4 478999999999874
No 16
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=99.98 E-value=1.5e-32 Score=227.72 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=123.8
Q ss_pred cEEEEEEEecCCcccCCcccEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCccCeEEEeeCc
Q 028415 15 YTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSS 94 (209)
Q Consensus 15 ~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~~g~v~E~s~ 94 (209)
..+.+.+.|+++++. .+++++.+++ ++|..++.++++||+ ||+.+.+++++|+++|+||+|++|. +|+|+|+++
T Consensus 81 g~~~i~~~p~~~~~~--~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~~e~l~l~~--~g~v~E~s~ 154 (221)
T 3qqm_A 81 GDATASAQPYEPLAA--DKVWILRLAR-TRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQADEVLLANE--RGEICEGTI 154 (221)
T ss_dssp SCEEEEEEECCCCCT--TCCEEEEECS-CCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTCSEEEEEBT--TSCEEEESS
T ss_pred CCEEEEEEcCCCCCC--CCCEEEEEee-eEecCCCcchhchhc-chHHHHHHHHHHHhcCCcEEEEECC--CCeEEEcCc
Confidence 357788889876542 2457777764 567777778999996 9999999999999999999999998 899999999
Q ss_pred eEEEEEEC-CEEEecCCCCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEE
Q 028415 95 CNIFVVKG-NVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGS 164 (209)
Q Consensus 95 ~Nlf~~~~-~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~ 164 (209)
+|||++++ |+|+|||++.++|+||||+.+++++ +++|++++++||..|||+|+|||++||+||+-
T Consensus 155 sNif~~~~~~~l~TP~~~~~~L~GitR~~ll~~~-----~v~e~~i~~~~L~~adevf~~ns~~gi~pV~l 220 (221)
T 3qqm_A 155 TNVFADFGDGVLATPRLDCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLIPAKL 220 (221)
T ss_dssp CEEEEECSSSCEEEECGGGTCCCCHHHHHHHHTT-----SEEEECCCHHHHTTCSEEEEEETTTEEEEEEE
T ss_pred eeEEEEeCCCEEECCCCccCcchHHHHHHHHhhC-----cEEEEeCCHHHHHhCCEEEEEecceeEEEEEE
Confidence 99999998 9999999999999999999999864 79999999999999999999999999999974
No 17
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=99.97 E-value=5.7e-32 Score=227.38 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=114.9
Q ss_pred cEEEEEeccccccCCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCccCeEEEeeCceEEEEEECCEEEecCCCCC
Q 028415 34 PINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGT 113 (209)
Q Consensus 34 ~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~ 113 (209)
++++.+++ + |..|+ +.++||+ ||+.+++++++|+++|+||+|++|. +|+|+|++++|||+++||+|+|| .+
T Consensus 108 g~~l~~~~-~-r~~~~-~~~~Kt~-n~~~~~~a~~~A~~~g~de~l~ld~--~G~v~Egs~sNif~v~~g~l~TP---~~ 178 (246)
T 2zgi_A 108 GVRVRLTG-Y-RVHPD-LARYKTG-NYLPYRLALEEARKEGAFEGLLLDA--FGHVVDGSRTSPLLFREGTLYLL---EG 178 (246)
T ss_dssp CBCEEEEE-E-ECCTT-TTTSCBS-CCHHHHHHHHHHHTTTCSEEEEECT--TSCEEEESSSEEEEEETTEEEEE---CS
T ss_pred CeEEEEec-c-cCCCC-Cccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEECC---CC
Confidence 56666664 4 77777 8899997 8999999999999999999999998 89999999999999999999999 68
Q ss_pred cccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEEEEECCe
Q 028415 114 ILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGK 170 (209)
Q Consensus 114 ~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~i~~~~~ 170 (209)
+|+||||+.++++|+++|++++|++++++||.. |+|+|||++||+||.+| |++
T Consensus 179 iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~--evfltns~~gi~pV~~i--d~~ 231 (246)
T 2zgi_A 179 GLEGITREKVAEAARGLGLRVERGLFRPEGLRG--HLLLAGSGVGLLPVRPP--PPE 231 (246)
T ss_dssp SCCCHHHHHHHHHHHHTTCEEEEECCCGGGCCS--EEEEEETTTEEEEBSSC--CGG
T ss_pred ccCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHh--hHeeecChhheEEEEEE--ChH
Confidence 999999999999999999999999999999998 99999999999999998 544
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=99.95 E-value=1.1e-27 Score=194.47 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=92.2
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHHHCCCCEEEEEcCccCeEEEeeCceEEEEEECCEEEecCCCCCcccCcHHHHHHHH
Q 028415 47 TPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDV 126 (209)
Q Consensus 47 ~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~llld~~~~g~v~E~s~~Nlf~~~~~~l~TP~~~~~~L~GitR~~vl~~ 126 (209)
.++.++++||+ ||+ ++++++|+++|+||+||+ . +|+|+|++++|||+++||+|+||| .++|+||||+.+++
T Consensus 95 ~~~~~~~~Kt~-n~~--~~~~~~A~~~g~de~l~l-~--~G~v~E~s~sNif~~~~g~l~TP~--~~~L~GitR~~ll~- 165 (194)
T 3ceb_A 95 CDHIDYSLKFS-DRT--LLNNLLKQKEECDEIMII-R--QGKVTDCSIGNLIFRQNNQWITPD--KPLLEGTQRAKLLE- 165 (194)
T ss_dssp CSSCCCSSCBS-CCH--HHHHHHGGGTTSSEEEEE-E--TTEECCCSSSEEEEEETTEEEEES--SCSSCCHHHHHHHH-
T ss_pred CCCcchhhccc-CHH--HHHHHHHhhCCCCEEEEE-e--CCEEEEeccEEEEEEECCEEECCC--CCCcChHHHHHHHc-
Confidence 34567899996 888 568888999999999999 7 899999999999999999999999 68999999999998
Q ss_pred HHHCCCcEEEEEcCHHHHhccceeEEEeccCee
Q 028415 127 AQSQGFQVEERLVTVEELLDADEVFCTGTAVVV 159 (209)
Q Consensus 127 a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi 159 (209)
+++|+|++++++||.+|||+|+|||++|+
T Consensus 166 ----~~~v~e~~i~~~eL~~adevfl~ns~~gi 194 (194)
T 3ceb_A 166 ----QKKIIAREIFFEDLAQYEEIRLINAMNGL 194 (194)
T ss_dssp ----TTSSEEECCBGGGGGGCSCEEEEBTTBCC
T ss_pred ----CCCEEEecCCHHHHhhccEEEEEecccCC
Confidence 57999999999999999999999999885
No 19
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=49.79 E-value=21 Score=25.56 Aligned_cols=44 Identities=11% Similarity=0.233 Sum_probs=32.3
Q ss_pred CcccCcHHH-HHHHHHHHCCCcEEE---------EEcCHHHHhccceeEEEecc
Q 028415 113 TILPGITRK-SIIDVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 156 (209)
Q Consensus 113 ~~L~GitR~-~vl~~a~~~g~~v~e---------~~i~~~el~~ade~fl~ns~ 156 (209)
|+-...+-. .+-+.|+++|++++. ..++.+|+..||-+.+.+..
T Consensus 17 GiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 17 GLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 444444433 444668889998765 36999999999999998875
No 20
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=39.02 E-value=34 Score=24.24 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=32.2
Q ss_pred CcccCcHHHHHH-HHHHHCCCcEEE---------EEcCHHHHhccceeEEEecc
Q 028415 113 TILPGITRKSII-DVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 156 (209)
Q Consensus 113 ~~L~GitR~~vl-~~a~~~g~~v~e---------~~i~~~el~~ade~fl~ns~ 156 (209)
|+-...+-...| +.|+++|++++. ..++.+|+..||-+.+.+..
T Consensus 14 GiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r48_A 14 GIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADR 67 (106)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 555555544444 567788987755 35999999999999998874
No 21
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=38.27 E-value=53 Score=20.66 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCccCeEEEe--------eCceEEEEEECCEEEecCCCCCcccCcH
Q 028415 73 KGYSDVLYLDCVHKRYLEE--------VSSCNIFVVKGNVISTPAIKGTILPGIT 119 (209)
Q Consensus 73 ~g~de~llld~~~~g~v~E--------~s~~Nlf~~~~~~l~TP~~~~~~L~Git 119 (209)
.|.+|+-|+-+ ||.|.. +..+|-|++.|..=-- ++ ...||||-
T Consensus 5 ~gIeEVnmfk~--dg~vihF~nPkVqaS~~aNTfvv~G~~e~K-~l-~e~lP~Il 55 (58)
T 3mcb_B 5 SGIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHAETK-QL-TEMLPSIL 55 (58)
T ss_dssp CCCCEEEEEET--TSEEEEEESCEEEEETTTTEEEEESCEEEE-EG-GGGTTGGG
T ss_pred CCeeEEEEEec--CCEEEEecCcceEEeeccceEEEecCCeee-EH-HHHChhhh
Confidence 36777777765 676655 4569999998753332 33 35677774
No 22
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=37.93 E-value=34 Score=24.25 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=32.3
Q ss_pred CCcccCcHHHHHH-HHHHHCCCcEEE---------EEcCHHHHhccceeEEEecc
Q 028415 112 GTILPGITRKSII-DVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 156 (209)
Q Consensus 112 ~~~L~GitR~~vl-~~a~~~g~~v~e---------~~i~~~el~~ade~fl~ns~ 156 (209)
.|+-...+-...| +.|+++|++++. ..++.+|+..||-+.+.+..
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r4q_A 13 TGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK 67 (106)
T ss_dssp CC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 3555565655555 567888988755 35999999999999998874
No 23
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=37.47 E-value=53 Score=21.21 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=27.0
Q ss_pred CCCEEEEEcCccCeEEEee--------CceEEEEEECCEEEecCCCCCcccCcHH
Q 028415 74 GYSDVLYLDCVHKRYLEEV--------SSCNIFVVKGNVISTPAIKGTILPGITR 120 (209)
Q Consensus 74 g~de~llld~~~~g~v~E~--------s~~Nlf~~~~~~l~TP~~~~~~L~GitR 120 (209)
|.+|+-|+-+ ||.|... ..+|-|++.|..=-- ++ ...||||--
T Consensus 6 gIeEVnmfk~--dg~vihF~nPkVqaS~~aNT~vv~G~~e~K-~l-~ellP~Il~ 56 (66)
T 3lkx_A 6 GIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHAETK-QL-TEMLPSILN 56 (66)
T ss_dssp CEEEEEEEET--TSEEEEEESCEEEEECC-CEEEEESCEEEE-EG-GGGTTGGGG
T ss_pred CeeEEEEEec--CCEEEEecCcceEEeeccCeeEecCCCEEe-EH-HHHChhhhh
Confidence 5667766665 6666554 679999998863333 33 357888753
No 24
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=33.70 E-value=29 Score=24.54 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=32.0
Q ss_pred CcccCcH-HHHHHHHHHHCCCcEEE---------EEcCHHHHhccceeEEEecc
Q 028415 113 TILPGIT-RKSIIDVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 156 (209)
Q Consensus 113 ~~L~Git-R~~vl~~a~~~g~~v~e---------~~i~~~el~~ade~fl~ns~ 156 (209)
|+-...+ -+.+-+.|+++|++++. ..++.+|+..||-+.+....
T Consensus 14 GiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~ 67 (106)
T 2m1z_A 14 GVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDT 67 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccc
Confidence 4444555 45556778889987753 35788999999999988764
No 25
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=27.49 E-value=16 Score=23.48 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=28.3
Q ss_pred CcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhccceeE
Q 028415 113 TILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVF 151 (209)
Q Consensus 113 ~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~f 151 (209)
+.+.|-.|+.+-+.|++.|+ ..||++.+..|.+.|
T Consensus 18 ~FVR~kvrr~tE~~Are~G~----~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 18 FFARSQAKARIEQLARQAEQ----DIVTPELVEQARLEF 52 (62)
T ss_dssp GGGHHHHHHHHHHHHHHTTC----SEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC----CeEcHHHHHHHHHHH
Confidence 45677788888899999998 467999999887755
No 26
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=26.59 E-value=27 Score=23.67 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=26.6
Q ss_pred HHHHHHHCCCcEEEEEcCHHHHhccceeEEEeccCeeEEEEEEEECCeEE
Q 028415 123 IIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRV 172 (209)
Q Consensus 123 vl~~a~~~g~~v~e~~i~~~el~~ade~fl~ns~~gi~pV~~i~~~~~~~ 172 (209)
+-+++.+.|++.+|..+.-+.- ..+++.-.+...--+|+.-|. ||+.+
T Consensus 20 aK~~L~~~gi~y~~idi~~d~~-~~~~~~~~~~G~~tVP~I~i~-Dg~~l 67 (92)
T 2lqo_A 20 LKTALTANRIAYDEVDIEHNRA-AAEFVGSVNGGNRTVPTVKFA-DGSTL 67 (92)
T ss_dssp HHHHHHHTTCCCEEEETTTCHH-HHHHHHHHSSSSSCSCEEEET-TSCEE
T ss_pred HHHHHHhcCCceEEEEcCCCHH-HHHHHHHHcCCCCEeCEEEEe-CCEEE
Confidence 3455677899999999975432 122322222223345776663 45554
No 27
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=25.25 E-value=1.3e+02 Score=20.54 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=30.5
Q ss_pred cCcHHHHHHHHHHH---CCCcEEEEEcC---HHHHhccceeEEEeccC
Q 028415 116 PGITRKSIIDVAQS---QGFQVEERLVT---VEELLDADEVFCTGTAV 157 (209)
Q Consensus 116 ~GitR~~vl~~a~~---~g~~v~e~~i~---~~el~~ade~fl~ns~~ 157 (209)
.|-|++..-.+++. .|.+++...+. ++++.++|-+++...+.
T Consensus 10 tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y 57 (137)
T 2fz5_A 10 TGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAM 57 (137)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCB
T ss_pred CChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEcccc
Confidence 48888776655543 47777766654 67888999998887774
No 28
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=24.72 E-value=88 Score=22.70 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=35.1
Q ss_pred cCcHHHHHHHHHHHCCCcEEEEEc---CHHHHhccceeEEEeccC--eeEEE
Q 028415 116 PGITRKSIIDVAQSQGFQVEERLV---TVEELLDADEVFCTGTAV--VVSPV 162 (209)
Q Consensus 116 ~GitR~~vl~~a~~~g~~v~e~~i---~~~el~~ade~fl~ns~~--gi~pV 162 (209)
-|.|++..-.+++.+|. ++..++ .++++..+|-+++..++. |..|-
T Consensus 12 tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p~ 62 (164)
T 2bmv_A 12 SGNAEAIAEKISKAIGN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQT 62 (164)
T ss_dssp SSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEECH
T ss_pred CchHHHHHHHHHHHcCC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCcH
Confidence 49999999999998887 665555 466888889888877764 56663
No 29
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=23.04 E-value=94 Score=22.68 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=30.0
Q ss_pred CCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhc
Q 028415 112 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLD 146 (209)
Q Consensus 112 ~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ 146 (209)
.|-+.|+.-+.+-.++++.|++++-...+..++..
T Consensus 21 ~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~ 55 (227)
T 3tql_A 21 SGQVEGFGADIVKAVCKQMQAVCTISNQPWDSLIP 55 (227)
T ss_dssp -CCEESHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred CCCcccchHHHHHHHHHHhCCeEEEEeCCHHHHHH
Confidence 56789999999999999999999999988887654
No 30
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=22.01 E-value=87 Score=23.06 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCcccCcHHHHHHHHHHHCCCcEEEEEcCHHHHhc
Q 028415 111 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLD 146 (209)
Q Consensus 111 ~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ 146 (209)
..|-+.|+.-+.+-.++++.|++++-...+.+++..
T Consensus 29 ~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~ 64 (234)
T 3h7m_A 29 QNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFS 64 (234)
T ss_dssp TTSCEESHHHHHHHHHHHHHTCCEEEEEECGGGHHH
T ss_pred CCCCEeeeEHHHHHHHHHHcCCceEEEeCCHHHHHH
Confidence 457789999999999999999999998888777654
No 31
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=20.00 E-value=93 Score=23.68 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=29.9
Q ss_pred CCCcccCcHHHHHHHHHHHC-CCcEEEEEcCHHHHhc
Q 028415 111 KGTILPGITRKSIIDVAQSQ-GFQVEERLVTVEELLD 146 (209)
Q Consensus 111 ~~~~L~GitR~~vl~~a~~~-g~~v~e~~i~~~el~~ 146 (209)
++|-+.|+.-+.+-++|+++ |++++-...+.+.+..
T Consensus 27 ~~G~~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~~ 63 (243)
T 4gvo_A 27 ENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLV 63 (243)
T ss_dssp TTSCEESHHHHHHHHHHHTCTTEEEEEEECCGGGHHH
T ss_pred CCCcEEEhHHHHHHHHHHhccCCeEEEEECCHHHHHH
Confidence 35778999999999999996 9999999988876543
Done!