Query 028416
Match_columns 209
No_of_seqs 110 out of 1219
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 11:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 100.0 1.7E-33 3.7E-38 217.2 19.3 172 27-209 9-189 (211)
2 KOG0406 Glutathione S-transfer 100.0 3.4E-33 7.4E-38 212.4 19.5 181 24-209 5-198 (231)
3 PLN02473 glutathione S-transfe 100.0 8.6E-31 1.9E-35 202.5 16.3 173 28-209 2-198 (214)
4 PRK15113 glutathione S-transfe 100.0 6.4E-30 1.4E-34 197.7 18.9 171 26-209 3-195 (214)
5 PRK13972 GSH-dependent disulfi 100.0 6.1E-30 1.3E-34 197.9 16.1 167 28-209 1-192 (215)
6 COG0625 Gst Glutathione S-tran 100.0 9.9E-30 2.1E-34 196.2 16.4 169 29-209 1-191 (211)
7 KOG0868 Glutathione S-transfer 100.0 4.9E-30 1.1E-34 184.5 12.5 173 26-208 3-193 (217)
8 PRK10357 putative glutathione 100.0 4E-29 8.7E-34 191.5 17.4 171 29-209 1-187 (202)
9 PRK10542 glutathionine S-trans 100.0 2.7E-29 5.8E-34 192.3 16.0 168 29-209 1-184 (201)
10 TIGR01262 maiA maleylacetoacet 100.0 6.3E-29 1.4E-33 191.5 16.0 170 30-209 1-191 (210)
11 TIGR00862 O-ClC intracellular 100.0 1.3E-28 2.8E-33 191.4 17.1 173 34-209 16-207 (236)
12 PLN02395 glutathione S-transfe 100.0 9.2E-29 2E-33 191.2 16.3 172 28-209 2-197 (215)
13 PRK11752 putative S-transferas 100.0 6.7E-28 1.4E-32 191.7 18.7 176 25-209 41-245 (264)
14 PLN02378 glutathione S-transfe 100.0 8.1E-28 1.8E-32 185.8 16.9 168 33-209 16-186 (213)
15 PLN02817 glutathione dehydroge 100.0 4.4E-27 9.5E-32 186.4 17.9 169 32-209 68-238 (265)
16 PRK10387 glutaredoxin 2; Provi 100.0 2.5E-27 5.4E-32 182.5 14.2 163 29-209 1-200 (210)
17 PTZ00057 glutathione s-transfe 99.9 1.7E-25 3.7E-30 171.9 17.2 170 27-209 3-186 (205)
18 KOG0867 Glutathione S-transfer 99.9 8.5E-26 1.9E-30 175.6 15.3 173 28-209 2-196 (226)
19 TIGR02182 GRXB Glutaredoxin, G 99.9 9.8E-26 2.1E-30 173.7 14.7 162 30-209 1-199 (209)
20 KOG4420 Uncharacterized conser 99.9 7.6E-24 1.6E-28 160.9 12.0 203 1-209 1-274 (325)
21 KOG1695 Glutathione S-transfer 99.9 1.3E-21 2.8E-26 148.1 16.7 152 28-186 3-168 (206)
22 KOG1422 Intracellular Cl- chan 99.9 5.2E-21 1.1E-25 141.6 15.7 171 35-208 19-191 (221)
23 PLN02907 glutamate-tRNA ligase 99.8 3.6E-20 7.8E-25 163.6 16.7 149 29-209 3-153 (722)
24 cd03055 GST_N_Omega GST_N fami 99.8 2.8E-19 6.1E-24 119.3 10.0 87 10-101 2-89 (89)
25 PF13417 GST_N_3: Glutathione 99.8 1.7E-19 3.8E-24 116.5 7.9 74 31-107 1-74 (75)
26 COG0435 ECM4 Predicted glutath 99.8 4.9E-19 1.1E-23 136.1 7.6 199 1-208 26-272 (324)
27 cd03061 GST_N_CLIC GST_N famil 99.8 1.8E-18 3.9E-23 114.5 8.5 71 35-108 20-90 (91)
28 KOG2903 Predicted glutathione 99.8 8.2E-19 1.8E-23 133.7 7.5 199 1-209 16-274 (319)
29 cd03059 GST_N_SspA GST_N famil 99.8 4.6E-18 9.9E-23 109.1 9.0 73 29-104 1-73 (73)
30 cd03052 GST_N_GDAP1 GST_N fami 99.8 5.1E-18 1.1E-22 108.9 8.2 70 29-101 1-73 (73)
31 cd03058 GST_N_Tau GST_N family 99.8 7E-18 1.5E-22 108.6 8.8 73 29-104 1-74 (74)
32 cd03041 GST_N_2GST_N GST_N fam 99.7 7.7E-18 1.7E-22 109.3 8.6 74 28-104 1-77 (77)
33 cd03060 GST_N_Omega_like GST_N 99.7 1.9E-17 4E-22 105.8 8.4 69 29-100 1-70 (71)
34 cd03053 GST_N_Phi GST_N family 99.7 4E-17 8.7E-22 105.6 9.0 73 28-103 1-76 (76)
35 cd03045 GST_N_Delta_Epsilon GS 99.7 3.7E-17 8.1E-22 105.1 8.6 71 29-102 1-74 (74)
36 cd03050 GST_N_Theta GST_N fami 99.7 7.1E-17 1.5E-21 104.5 8.9 73 29-104 1-76 (76)
37 cd03048 GST_N_Ure2p_like GST_N 99.7 7.2E-17 1.6E-21 105.7 9.0 74 28-105 1-80 (81)
38 cd03076 GST_N_Pi GST_N family, 99.7 6.1E-17 1.3E-21 104.0 7.7 72 29-103 2-73 (73)
39 cd03056 GST_N_4 GST_N family, 99.7 2.2E-16 4.8E-21 101.2 8.4 70 29-101 1-73 (73)
40 COG2999 GrxB Glutaredoxin 2 [P 99.7 5.1E-16 1.1E-20 112.2 10.4 163 29-208 1-199 (215)
41 cd03049 GST_N_3 GST_N family, 99.7 2.4E-16 5.1E-21 101.2 7.8 70 29-101 1-73 (73)
42 cd03037 GST_N_GRX2 GST_N famil 99.7 2.4E-16 5.3E-21 100.6 7.8 70 29-102 1-71 (71)
43 cd03047 GST_N_2 GST_N family, 99.7 3.2E-16 6.9E-21 100.6 8.3 70 29-101 1-73 (73)
44 cd03044 GST_N_EF1Bgamma GST_N 99.7 2.9E-16 6.4E-21 101.3 8.2 70 30-102 2-74 (75)
45 cd03039 GST_N_Sigma_like GST_N 99.7 2.2E-16 4.8E-21 101.0 7.5 71 29-102 1-72 (72)
46 cd03051 GST_N_GTT2_like GST_N 99.7 2.6E-16 5.7E-21 101.0 7.8 70 29-101 1-74 (74)
47 cd03057 GST_N_Beta GST_N famil 99.7 4E-16 8.7E-21 101.1 8.4 73 29-105 1-77 (77)
48 KOG3029 Glutathione S-transfer 99.7 1.9E-15 4E-20 116.7 13.2 70 27-101 89-158 (370)
49 cd03046 GST_N_GTT1_like GST_N 99.7 5.9E-16 1.3E-20 100.0 8.8 73 29-105 1-76 (76)
50 cd03080 GST_N_Metaxin_like GST 99.7 6.2E-16 1.3E-20 99.8 8.3 68 28-105 1-75 (75)
51 cd03042 GST_N_Zeta GST_N famil 99.7 5.6E-16 1.2E-20 99.3 8.1 70 29-101 1-73 (73)
52 PF13409 GST_N_2: Glutathione 99.7 4E-16 8.7E-21 99.3 7.2 67 36-103 1-70 (70)
53 KOG4244 Failed axon connection 99.7 1.9E-15 4.1E-20 116.0 12.1 170 24-209 41-269 (281)
54 cd03040 GST_N_mPGES2 GST_N fam 99.6 7E-16 1.5E-20 100.0 7.8 72 28-104 1-76 (77)
55 cd03077 GST_N_Alpha GST_N fami 99.6 3E-15 6.6E-20 97.5 9.0 73 28-105 1-77 (79)
56 cd03075 GST_N_Mu GST_N family, 99.6 2.3E-15 5E-20 98.7 8.3 74 29-104 1-82 (82)
57 PF02798 GST_N: Glutathione S- 99.6 6.6E-15 1.4E-19 95.2 9.3 71 29-102 1-76 (76)
58 cd03038 GST_N_etherase_LigE GS 99.6 3.3E-15 7.1E-20 98.5 7.6 67 35-105 14-84 (84)
59 cd03043 GST_N_1 GST_N family, 99.6 1.7E-14 3.7E-19 92.5 7.5 65 34-101 7-73 (73)
60 cd00570 GST_N_family Glutathio 99.6 3E-14 6.6E-19 89.8 8.3 70 29-101 1-71 (71)
61 cd03054 GST_N_Metaxin GST_N fa 99.5 2.6E-13 5.6E-18 86.7 8.2 64 30-103 2-72 (72)
62 cd03200 GST_C_JTV1 GST_C famil 99.3 9.4E-12 2E-16 84.0 8.5 90 97-209 1-92 (96)
63 cd03079 GST_N_Metaxin2 GST_N f 99.3 1.2E-11 2.5E-16 78.8 7.5 59 36-103 16-74 (74)
64 cd03203 GST_C_Lambda GST_C fam 99.3 5E-11 1.1E-15 83.8 10.5 97 113-209 1-98 (120)
65 PF13410 GST_C_2: Glutathione 99.2 1.1E-11 2.4E-16 78.4 4.7 63 141-209 6-69 (69)
66 cd03184 GST_C_Omega GST_C fami 99.2 1.2E-10 2.6E-15 82.3 9.4 93 116-209 2-100 (124)
67 cd03186 GST_C_SspA GST_N famil 99.2 7.8E-11 1.7E-15 80.9 8.0 87 115-209 2-96 (107)
68 cd03189 GST_C_GTT1_like GST_C 99.2 1.1E-10 2.4E-15 81.7 8.6 90 111-209 2-114 (119)
69 TIGR02190 GlrX-dom Glutaredoxi 99.2 1.9E-10 4.2E-15 74.7 8.5 76 23-101 4-79 (79)
70 cd03182 GST_C_GTT2_like GST_C 99.2 1.5E-10 3.3E-15 80.7 8.6 89 113-209 1-110 (117)
71 cd03196 GST_C_5 GST_C family, 99.2 1.6E-10 3.5E-15 80.6 8.1 92 112-209 2-104 (115)
72 cd03190 GST_C_ECM4_like GST_C 99.1 2.1E-10 4.7E-15 83.0 8.1 92 115-209 3-105 (142)
73 cd03188 GST_C_Beta GST_C famil 99.1 1.4E-10 3E-15 80.3 6.3 85 116-209 2-103 (114)
74 PF00043 GST_C: Glutathione S- 99.1 2.2E-10 4.8E-15 76.8 6.8 62 140-209 27-90 (95)
75 cd03198 GST_C_CLIC GST_C famil 99.1 3.5E-10 7.5E-15 80.5 7.9 69 141-209 29-111 (134)
76 cd03209 GST_C_Mu GST_C family, 99.1 7.4E-10 1.6E-14 77.9 8.4 86 116-209 2-96 (121)
77 KOG3027 Mitochondrial outer me 99.1 1.9E-09 4.1E-14 80.2 10.8 167 25-208 25-243 (257)
78 cd03192 GST_C_Sigma_like GST_C 99.1 8.9E-10 1.9E-14 75.2 8.3 88 116-209 2-103 (104)
79 cd03185 GST_C_Tau GST_C family 99.1 1.4E-09 3E-14 76.8 9.4 91 115-209 2-102 (126)
80 cd03180 GST_C_2 GST_C family, 99.0 1.1E-09 2.3E-14 75.4 7.4 85 116-209 2-103 (110)
81 cd03177 GST_C_Delta_Epsilon GS 99.0 1.5E-09 3.4E-14 75.8 8.0 86 116-209 2-99 (118)
82 cd03179 GST_C_1 GST_C family, 99.0 4.7E-10 1E-14 76.5 5.0 85 116-209 2-103 (105)
83 cd03210 GST_C_Pi GST_C family, 99.0 1.9E-09 4.2E-14 76.3 8.0 89 116-209 3-99 (126)
84 cd03201 GST_C_DHAR GST_C famil 99.0 3.2E-09 6.9E-14 74.7 8.1 66 142-209 31-97 (121)
85 cd03078 GST_N_Metaxin1_like GS 99.0 4.1E-09 9E-14 67.3 7.9 58 36-103 15-72 (73)
86 cd03202 GST_C_etherase_LigE GS 99.0 1.4E-09 3E-14 76.8 6.1 63 140-209 57-120 (124)
87 cd03187 GST_C_Phi GST_C family 99.0 1.5E-09 3.2E-14 75.7 6.1 60 143-209 47-107 (118)
88 cd03029 GRX_hybridPRX5 Glutare 99.0 5.7E-09 1.2E-13 66.4 8.3 71 28-101 2-72 (72)
89 PF14497 GST_C_3: Glutathione 99.0 6.8E-10 1.5E-14 75.2 4.3 60 142-209 36-96 (99)
90 cd03178 GST_C_Ure2p_like GST_C 99.0 6.4E-10 1.4E-14 77.0 4.1 60 142-209 41-101 (113)
91 cd03208 GST_C_Alpha GST_C fami 98.9 4.6E-09 1E-13 75.5 8.2 88 116-209 3-102 (137)
92 cd03183 GST_C_Theta GST_C fami 98.9 2.1E-09 4.5E-14 76.0 6.3 60 143-209 47-107 (126)
93 PRK10638 glutaredoxin 3; Provi 98.9 7.1E-09 1.5E-13 67.9 8.3 71 28-101 3-74 (83)
94 cd03193 GST_C_Metaxin GST_C fa 98.9 3.8E-09 8.3E-14 69.9 6.2 66 141-209 19-86 (88)
95 cd03181 GST_C_EFB1gamma GST_C 98.9 3.6E-09 7.8E-14 74.3 5.9 88 116-209 1-103 (123)
96 cd03191 GST_C_Zeta GST_C famil 98.9 5.1E-09 1.1E-13 73.4 6.4 88 115-209 2-106 (121)
97 cd03204 GST_C_GDAP1 GST_C fami 98.9 6.5E-09 1.4E-13 71.7 6.3 64 141-209 29-104 (111)
98 cd00299 GST_C_family Glutathio 98.8 9.5E-09 2.1E-13 69.0 6.3 62 142-209 37-99 (100)
99 cd03206 GST_C_7 GST_C family, 98.8 1.1E-08 2.3E-13 69.4 5.8 60 141-209 33-93 (100)
100 cd03207 GST_C_8 GST_C family, 98.8 2.1E-08 4.5E-13 68.3 6.0 58 142-209 31-89 (103)
101 cd03195 GST_C_4 GST_C family, 98.8 5.2E-08 1.1E-12 67.7 8.0 85 115-209 2-100 (114)
102 cd03027 GRX_DEP Glutaredoxin ( 98.7 1.2E-07 2.5E-12 60.5 7.6 69 27-98 1-70 (73)
103 PRK10329 glutaredoxin-like pro 98.7 1.3E-07 2.9E-12 61.5 7.0 62 28-92 2-63 (81)
104 TIGR02196 GlrX_YruB Glutaredox 98.6 2E-07 4.2E-12 59.0 7.5 70 28-100 1-73 (74)
105 KOG3028 Translocase of outer m 98.6 1.6E-06 3.4E-11 68.9 13.5 158 37-208 17-229 (313)
106 cd03194 GST_C_3 GST_C family, 98.6 2E-07 4.3E-12 64.8 7.5 59 143-209 43-101 (114)
107 cd02066 GRX_family Glutaredoxi 98.6 3.1E-07 6.7E-12 57.7 7.7 68 29-99 2-70 (72)
108 cd03211 GST_C_Metaxin2 GST_C f 98.6 6.6E-08 1.4E-12 68.5 3.8 66 141-209 57-124 (126)
109 cd02976 NrdH NrdH-redoxin (Nrd 98.6 3.5E-07 7.6E-12 57.7 6.8 61 29-92 2-63 (73)
110 cd03197 GST_C_mPGES2 GST_C fam 98.5 2E-07 4.2E-12 67.2 5.7 62 141-209 79-142 (149)
111 cd03418 GRX_GRXb_1_3_like Glut 98.5 9.6E-07 2.1E-11 56.4 7.8 71 28-101 1-73 (75)
112 cd03205 GST_C_6 GST_C family, 98.5 3E-07 6.5E-12 62.0 5.7 59 142-209 38-97 (98)
113 TIGR02200 GlrX_actino Glutared 98.5 5.5E-07 1.2E-11 57.6 5.9 70 28-100 1-75 (77)
114 cd03212 GST_C_Metaxin1_3 GST_C 98.4 2.7E-07 5.7E-12 66.3 3.3 67 140-209 63-131 (137)
115 PRK11200 grxA glutaredoxin 1; 98.4 3.6E-06 7.8E-11 55.3 8.3 75 28-105 2-84 (85)
116 COG0695 GrxC Glutaredoxin and 98.4 4.2E-06 9E-11 54.3 8.2 70 28-99 2-73 (80)
117 TIGR02183 GRXA Glutaredoxin, G 98.3 4.8E-06 1E-10 54.8 8.4 76 29-105 2-83 (86)
118 TIGR02181 GRX_bact Glutaredoxi 98.3 3.5E-06 7.5E-11 54.4 7.3 71 29-102 1-72 (79)
119 TIGR02194 GlrX_NrdH Glutaredox 98.3 2E-06 4.4E-11 54.6 6.1 56 29-88 1-57 (72)
120 PHA03050 glutaredoxin; Provisi 98.3 9.2E-06 2E-10 55.8 8.8 74 25-99 11-89 (108)
121 cd03419 GRX_GRXh_1_2_like Glut 98.3 1.1E-05 2.3E-10 52.3 8.7 72 28-102 1-76 (82)
122 PF00462 Glutaredoxin: Glutare 98.3 2E-06 4.4E-11 52.5 4.8 59 29-90 1-60 (60)
123 TIGR02189 GlrX-like_plant Glut 98.2 1.4E-05 3.1E-10 54.0 9.2 73 25-100 6-82 (99)
124 PF14834 GST_C_4: Glutathione 98.2 1E-05 2.2E-10 55.2 7.0 94 113-208 1-113 (117)
125 TIGR02180 GRX_euk Glutaredoxin 98.1 4.5E-05 9.7E-10 49.5 8.7 73 29-102 1-77 (84)
126 TIGR00365 monothiol glutaredox 98.0 6.6E-05 1.4E-09 50.5 8.4 74 25-101 10-89 (97)
127 cd03028 GRX_PICOT_like Glutare 97.9 0.00014 3E-09 48.3 8.2 73 26-101 7-85 (90)
128 PF10568 Tom37: Outer mitochon 97.8 0.00014 3E-09 46.1 6.8 57 36-100 13-71 (72)
129 cd03199 GST_C_GRX2 GST_C famil 97.3 0.0036 7.7E-08 44.1 9.1 59 141-209 60-118 (128)
130 PRK12759 bifunctional gluaredo 97.2 0.0017 3.8E-08 55.0 8.0 69 28-98 3-79 (410)
131 PRK10824 glutaredoxin-4; Provi 97.2 0.003 6.5E-08 43.8 7.8 73 26-101 14-92 (115)
132 cd03031 GRX_GRX_like Glutaredo 97.1 0.0046 1E-07 44.8 8.0 71 28-101 1-82 (147)
133 PF04399 Glutaredoxin2_C: Glut 97.0 0.0021 4.5E-08 45.6 5.9 59 141-209 59-117 (132)
134 KOG1752 Glutaredoxin and relat 96.9 0.016 3.4E-07 39.4 8.8 75 25-101 12-89 (104)
135 KOG1147 Glutamyl-tRNA syntheta 96.8 0.0012 2.6E-08 56.5 3.2 106 85-208 43-150 (712)
136 PF05768 DUF836: Glutaredoxin- 96.8 0.015 3.2E-07 37.6 7.8 57 28-87 1-57 (81)
137 cd02973 TRX_GRX_like Thioredox 96.7 0.008 1.7E-07 37.0 5.9 62 28-91 2-64 (67)
138 PTZ00062 glutaredoxin; Provisi 96.6 0.016 3.5E-07 44.4 8.1 72 26-100 112-189 (204)
139 COG4545 Glutaredoxin-related p 96.4 0.016 3.4E-07 36.4 5.8 63 27-91 2-77 (85)
140 PRK01655 spxA transcriptional 95.9 0.014 3E-07 41.5 4.3 33 28-62 1-33 (131)
141 cd03036 ArsC_like Arsenate Red 95.8 0.014 3E-07 40.2 3.9 33 29-63 1-33 (111)
142 cd03032 ArsC_Spx Arsenate Redu 95.8 0.02 4.2E-07 39.7 4.5 33 28-62 1-33 (115)
143 cd02977 ArsC_family Arsenate R 95.6 0.021 4.4E-07 38.8 4.0 32 29-62 1-32 (105)
144 PRK12559 transcriptional regul 95.3 0.035 7.6E-07 39.4 4.5 33 28-62 1-33 (131)
145 PRK13344 spxA transcriptional 95.2 0.039 8.4E-07 39.3 4.4 33 28-62 1-33 (132)
146 TIGR01617 arsC_related transcr 94.8 0.052 1.1E-06 37.7 4.1 32 29-62 1-32 (117)
147 cd03035 ArsC_Yffb Arsenate Red 94.3 0.079 1.7E-06 36.1 4.1 32 29-62 1-32 (105)
148 COG1393 ArsC Arsenate reductas 94.3 0.1 2.2E-06 36.3 4.5 33 27-61 1-33 (117)
149 TIGR00411 redox_disulf_1 small 94.1 0.16 3.4E-06 32.3 5.0 57 28-88 2-62 (82)
150 cd03033 ArsC_15kD Arsenate Red 94.0 0.1 2.2E-06 36.0 4.1 32 29-62 2-33 (113)
151 TIGR00412 redox_disulf_2 small 93.6 0.67 1.4E-05 29.3 7.2 56 28-91 2-61 (76)
152 PRK10853 putative reductase; P 93.5 0.13 2.9E-06 35.7 4.0 33 28-62 1-33 (118)
153 PRK10026 arsenate reductase; P 93.4 0.17 3.7E-06 36.4 4.5 33 27-61 2-34 (141)
154 PHA02125 thioredoxin-like prot 92.5 0.62 1.3E-05 29.3 5.8 52 28-85 1-52 (75)
155 TIGR01616 nitro_assoc nitrogen 92.4 0.26 5.6E-06 34.7 4.3 32 28-61 2-33 (126)
156 cd03026 AhpF_NTD_C TRX-GRX-lik 92.2 0.49 1.1E-05 31.1 5.2 63 27-91 14-77 (89)
157 cd01659 TRX_superfamily Thiore 92.0 0.57 1.2E-05 27.0 5.1 53 29-84 1-58 (69)
158 PF11287 DUF3088: Protein of u 91.8 0.74 1.6E-05 31.5 5.7 70 36-105 23-108 (112)
159 COG0278 Glutaredoxin-related p 91.0 2.4 5.3E-05 28.4 7.3 74 26-101 14-93 (105)
160 cd03034 ArsC_ArsC Arsenate Red 90.4 0.5 1.1E-05 32.5 4.0 31 29-61 1-31 (112)
161 TIGR00014 arsC arsenate reduct 90.3 0.52 1.1E-05 32.5 4.0 32 29-62 1-32 (114)
162 cd03030 GRX_SH3BGR Glutaredoxi 89.6 2.6 5.6E-05 27.9 6.8 68 29-99 2-80 (92)
163 PF11801 Tom37_C: Tom37 C-term 86.9 1.4 3.1E-05 32.7 4.6 37 145-184 112-153 (168)
164 PF13192 Thioredoxin_3: Thiore 85.3 3.7 8.1E-05 25.8 5.4 57 28-92 2-62 (76)
165 PF00085 Thioredoxin: Thioredo 82.5 8.1 0.00018 25.1 6.5 73 28-102 20-102 (103)
166 TIGR01295 PedC_BrcD bacterioci 78.2 6.8 0.00015 27.2 5.1 21 29-49 27-47 (122)
167 cd02949 TRX_NTR TRX domain, no 75.7 11 0.00024 24.6 5.4 61 28-90 16-80 (97)
168 PF03960 ArsC: ArsC family; I 71.1 6.5 0.00014 26.7 3.4 29 32-62 1-29 (110)
169 cd02989 Phd_like_TxnDC9 Phosdu 70.0 22 0.00047 24.2 5.9 61 28-91 25-89 (113)
170 TIGR02187 GlrX_arch Glutaredox 69.5 24 0.00052 27.0 6.7 55 28-84 136-191 (215)
171 PRK09381 trxA thioredoxin; Pro 69.4 30 0.00065 22.9 6.5 58 28-90 24-88 (109)
172 PF09635 MetRS-N: MetRS-N bind 66.4 5.4 0.00012 27.8 2.2 49 41-105 13-63 (122)
173 PF04908 SH3BGR: SH3-binding, 66.3 37 0.0008 22.8 7.4 68 29-99 3-86 (99)
174 COG3011 Predicted thiol-disulf 66.1 46 0.001 23.8 8.1 79 23-103 4-86 (137)
175 cd02984 TRX_PICOT TRX domain, 64.8 34 0.00074 21.9 7.1 60 28-89 17-80 (97)
176 COG3118 Thioredoxin domain-con 64.4 27 0.00058 28.4 6.1 73 28-105 46-131 (304)
177 cd02975 PfPDO_like_N Pyrococcu 62.7 31 0.00068 23.4 5.6 54 29-84 25-80 (113)
178 TIGR03143 AhpF_homolog putativ 58.0 27 0.00058 31.1 5.7 58 28-91 479-541 (555)
179 PTZ00051 thioredoxin; Provisio 55.4 42 0.00091 21.6 5.1 60 28-89 21-83 (98)
180 KOG0911 Glutaredoxin-related p 54.8 46 0.00099 25.9 5.6 71 28-101 140-216 (227)
181 cd02951 SoxW SoxW family; SoxW 53.7 68 0.0015 21.8 6.3 18 27-44 16-33 (125)
182 cd02957 Phd_like Phosducin (Ph 53.6 49 0.0011 22.2 5.3 61 29-92 28-91 (113)
183 cd02953 DsbDgamma DsbD gamma f 53.5 58 0.0013 21.3 5.6 54 28-84 14-77 (104)
184 KOG1668 Elongation factor 1 be 51.8 9.2 0.0002 29.8 1.5 32 147-181 10-42 (231)
185 TIGR02681 phage_pRha phage reg 51.2 20 0.00044 24.4 3.0 26 80-105 2-28 (108)
186 TIGR01068 thioredoxin thioredo 51.0 47 0.001 21.1 4.8 59 28-88 17-79 (101)
187 cd02947 TRX_family TRX family; 50.8 56 0.0012 20.0 7.2 59 28-88 13-74 (93)
188 PRK15317 alkyl hydroperoxide r 50.2 34 0.00074 30.1 5.0 75 27-103 118-197 (517)
189 TIGR03140 AhpF alkyl hydropero 49.8 34 0.00075 30.0 5.0 74 27-102 119-197 (515)
190 cd02956 ybbN ybbN protein fami 49.5 67 0.0015 20.5 5.6 59 29-89 16-78 (96)
191 KOG3425 Uncharacterized conser 49.1 65 0.0014 22.5 5.1 65 35-102 43-121 (128)
192 cd02962 TMX2 TMX2 family; comp 48.0 88 0.0019 22.7 6.1 62 29-91 51-122 (152)
193 PRK10996 thioredoxin 2; Provis 47.2 87 0.0019 22.1 6.0 60 29-90 56-119 (139)
194 cd02959 ERp19 Endoplasmic reti 45.2 57 0.0012 22.3 4.6 63 28-92 22-92 (117)
195 cd02963 TRX_DnaJ TRX domain, D 45.0 65 0.0014 21.6 4.8 58 28-89 27-91 (111)
196 cd02948 TRX_NDPK TRX domain, T 44.6 89 0.0019 20.5 5.4 58 29-89 21-83 (102)
197 PF13728 TraF: F plasmid trans 42.9 57 0.0012 25.2 4.7 55 29-84 124-188 (215)
198 cd02993 PDI_a_APS_reductase PD 42.0 70 0.0015 21.3 4.6 56 27-84 23-83 (109)
199 PTZ00443 Thioredoxin domain-co 41.6 1.5E+02 0.0032 23.1 6.8 76 28-105 55-140 (224)
200 cd02987 Phd_like_Phd Phosducin 40.9 1.2E+02 0.0026 22.4 6.1 60 29-92 87-150 (175)
201 PF06110 DUF953: Eukaryotic pr 38.0 29 0.00063 24.2 2.2 59 35-95 36-107 (119)
202 cd02954 DIM1 Dim1 family; Dim1 37.6 1.4E+02 0.0029 20.6 6.1 60 29-90 18-81 (114)
203 cd02952 TRP14_like Human TRX-r 36.4 1.1E+02 0.0023 21.3 4.8 56 35-93 38-106 (119)
204 cd02950 TxlA TRX-like protein 35.7 1.1E+02 0.0024 21.6 5.1 61 29-90 24-90 (142)
205 COG5494 Predicted thioredoxin/ 35.7 93 0.002 24.1 4.6 71 27-101 11-85 (265)
206 cd03020 DsbA_DsbC_DsbG DsbA fa 35.2 1.1E+02 0.0024 22.8 5.2 23 27-49 79-101 (197)
207 COG5515 Uncharacterized conser 33.7 37 0.00081 20.5 1.8 22 28-49 2-27 (70)
208 TIGR02740 TraF-like TraF-like 33.6 1.2E+02 0.0026 24.3 5.3 55 29-84 170-234 (271)
209 cd03006 PDI_a_EFP1_N PDIa fami 33.6 1.4E+02 0.0029 20.4 5.0 55 29-84 33-89 (113)
210 PF13098 Thioredoxin_2: Thiore 33.5 46 0.001 22.0 2.6 21 28-48 8-28 (112)
211 cd03003 PDI_a_ERdj5_N PDIa fam 33.2 1.4E+02 0.0029 19.3 6.1 59 28-88 21-83 (101)
212 TIGR02187 GlrX_arch Glutaredox 33.2 1.7E+02 0.0037 22.3 6.0 58 29-88 23-88 (215)
213 cd03004 PDI_a_ERdj5_C PDIa fam 33.1 1.2E+02 0.0026 19.7 4.6 55 28-84 22-78 (104)
214 cd02999 PDI_a_ERp44_like PDIa 32.7 98 0.0021 20.3 4.1 56 28-84 21-77 (100)
215 PRK10877 protein disulfide iso 30.1 1.1E+02 0.0024 23.9 4.5 24 27-50 109-132 (232)
216 TIGR01126 pdi_dom protein disu 30.1 1.1E+02 0.0025 19.4 4.1 55 27-84 15-74 (102)
217 cd03005 PDI_a_ERp46 PDIa famil 29.5 1.4E+02 0.0031 19.0 4.5 58 28-88 19-84 (102)
218 PHA02278 thioredoxin-like prot 29.4 1.8E+02 0.0038 19.4 7.2 61 29-90 18-85 (103)
219 cd02998 PDI_a_ERp38 PDIa famil 28.4 1.2E+02 0.0025 19.4 3.9 55 28-84 21-80 (105)
220 PRK07735 NADH dehydrogenase su 28.2 24 0.00051 30.1 0.5 35 170-207 375-409 (430)
221 PRK11657 dsbG disulfide isomer 27.3 77 0.0017 25.1 3.2 22 27-48 119-140 (251)
222 cd02955 SSP411 TRX domain, SSP 26.8 2.2E+02 0.0048 19.7 6.5 63 29-93 19-97 (124)
223 PF01323 DSBA: DSBA-like thior 26.2 1.2E+02 0.0025 22.2 4.0 36 28-65 1-41 (193)
224 cd02961 PDI_a_family Protein D 25.4 1.8E+02 0.0038 18.1 4.6 56 27-84 17-76 (101)
225 cd02985 TRX_CDSP32 TRX family, 25.1 2E+02 0.0044 18.7 6.1 61 28-90 18-84 (103)
226 TIGR01764 excise DNA binding d 24.8 1.2E+02 0.0027 16.2 3.4 25 77-101 24-48 (49)
227 cd02965 HyaE HyaE family; HyaE 24.7 2.4E+02 0.0051 19.3 6.3 63 28-92 30-98 (111)
228 PF04564 U-box: U-box domain; 22.9 2E+02 0.0043 17.7 4.6 26 78-104 14-39 (73)
229 cd02972 DsbA_family DsbA famil 22.8 1.5E+02 0.0033 18.2 3.6 22 29-50 1-22 (98)
230 cd02997 PDI_a_PDIR PDIa family 22.5 2.2E+02 0.0047 18.1 6.6 59 28-88 20-86 (104)
231 PF12062 HSNSD: heparan sulfat 22.5 3.9E+02 0.0084 23.5 6.6 50 29-93 63-117 (487)
232 cd02978 KaiB_like KaiB-like fa 21.6 2.2E+02 0.0048 17.9 4.3 54 28-84 3-60 (72)
233 PHA03075 glutaredoxin-like pro 21.3 2.2E+02 0.0048 19.8 4.0 67 27-104 3-70 (123)
234 PF13344 Hydrolase_6: Haloacid 21.1 1.6E+02 0.0034 19.5 3.4 67 38-109 17-83 (101)
235 COG2761 FrnE Predicted dithiol 21.1 1E+02 0.0022 24.1 2.7 26 26-51 5-34 (225)
236 PF12728 HTH_17: Helix-turn-he 20.8 1.7E+02 0.0037 16.2 3.7 28 76-103 23-50 (51)
237 PF09314 DUF1972: Domain of un 20.2 90 0.002 23.5 2.2 20 86-105 154-173 (185)
238 COG3019 Predicted metal-bindin 20.1 2.4E+02 0.0052 20.4 4.2 77 23-104 22-104 (149)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.7e-33 Score=217.24 Aligned_cols=172 Identities=19% Similarity=0.319 Sum_probs=142.5
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCCC
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEG 106 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~~ 106 (209)
++|+||+++.||+|++|+++|+++|++ |+.+.++...++++|++ +||.|+||+|++||.+|+||.||++||+++|++
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~--~e~~~v~~~~~~~~~~~-~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVS--VEIEQVEKDNLPQDLID-LNPYQSVPTLVDRELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCC--CEEEeCCcccCCHHHHH-hCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCC
Confidence 469999999999999999999999996 77888888777888998 999999999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhhHHHHHhhhc-------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHH
Q 028416 107 PSLLPDDPEKRKFAEELFSYSDTFIKDVSTSFK-------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYI 178 (209)
Q Consensus 107 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~ 178 (209)
..|+|.++.+|+++++|..++..........+. +...+.+...|..+|++|+ +++|++|+ +|+||++++
T Consensus 86 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~~l~G~~~t~AD~~l~ 162 (211)
T PRK09481 86 PPLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFG---EKPYFMSEEFSLVDCYLA 162 (211)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhc---cCCcccCCCccHHHHHHH
Confidence 889999999999999998876532222221111 1234567888999999998 78999999 999999999
Q ss_pred hHHHHHHHHhhhcCCCCCC-CCCchHHHhHhC
Q 028416 179 PFVDGYQMILSEGFKYDAT-IGRPKLAAWIEQ 209 (209)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~-~~~p~l~~w~~r 209 (209)
+.+.++... +.++. ..+|+|.+|++|
T Consensus 163 ~~~~~~~~~-----~~~~~~~~~p~l~~w~~~ 189 (211)
T PRK09481 163 PLLWRLPVL-----GIELSGPGAKELKGYMTR 189 (211)
T ss_pred HHHHHHHhc-----CCCCCCCCChhHHHHHHH
Confidence 998766433 33443 579999999975
No 2
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-33 Score=212.36 Aligned_cols=181 Identities=36% Similarity=0.531 Sum_probs=153.4
Q ss_pred CCCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcC-CCCCCCeEeeCCeEeeehHHHHHHHHh
Q 028416 24 LFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVY-PSNKVPSLEHNGKIIGESLDLINYVDS 102 (209)
Q Consensus 24 ~~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~-p~~~vP~L~~~~~~l~eS~aI~~yL~~ 102 (209)
..++.++||++..|||++|++++|++|||+ |+.++.+..++++|+++ .| +.++||+|+++|.+|+||..|++||++
T Consensus 5 ~~~~~vrL~~~w~sPfa~R~~iaL~~KgI~--yE~veedl~~Ks~~ll~-~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 5 PEDGTVKLLGMWFSPFAQRVRIALKLKGIP--YEYVEEDLTNKSEWLLE-KNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CCCCeEEEEEeecChHHHHHHHHHHhcCCc--eEEEecCCCCCCHHHHH-hccccccCCEEEECCceehhhHHHHHHHHh
Confidence 455889999999999999999999999997 78999999999999999 99 679999999999999999999999999
Q ss_pred cCC-CCCCCCCCHHHHHHHHHHHHhhhhhH---HHHHhhhc-----CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CCh
Q 028416 103 NFE-GPSLLPDDPEKRKFAEELFSYSDTFI---KDVSTSFK-----GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSL 172 (209)
Q Consensus 103 ~~~-~~~l~p~~~~~~a~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~ 172 (209)
.++ +++++|+|+.+|++++.|..+++... ........ +...+++...|..||+.|.+ +++|++|+ +++
T Consensus 82 ~w~~~~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k--~k~~fgG~~~G~ 159 (231)
T KOG0406|consen 82 TWPSGPPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGK--GKDFFGGETIGF 159 (231)
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCcCH
Confidence 999 58999999999999999999999422 22222211 22356799999999999985 89999999 999
Q ss_pred hHHHHHhHHHHHHHHhhhcCC--CCCCCCCchHHHhHhC
Q 028416 173 VDIAYIPFVDGYQMILSEGFK--YDATIGRPKLAAWIEQ 209 (209)
Q Consensus 173 AD~~l~~~l~~~~~~~~~~~~--~~~~~~~p~l~~w~~r 209 (209)
.|+++++.+.++........+ .....++|+|.+|.+|
T Consensus 160 vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~ 198 (231)
T KOG0406|consen 160 VDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKR 198 (231)
T ss_pred hhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHH
Confidence 999999877777665544332 3336789999999875
No 3
>PLN02473 glutathione S-transferase
Probab=99.97 E-value=8.6e-31 Score=202.49 Aligned_cols=173 Identities=20% Similarity=0.295 Sum_probs=136.3
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcC
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~ 104 (209)
.|+||+++.||+++||+++|+++|++ |+.+.++.. ..+++++. +||.|+||+|++||.+|+||.+|++||++++
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~--ye~~~v~~~~~~~~~~~~~~-~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~ 78 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIE--FEVIHVDLDKLEQKKPEHLL-RQPFGQVPAIEDGDLKLFESRAIARYYATKY 78 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCC--ceEEEecCcccccCCHHHHh-hCCCCCCCeEEECCEEEEehHHHHHHHHHHc
Confidence 58999999999999999999999997 666766654 34566777 9999999999999999999999999999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHHHhhhhhHHHH-----Hh-hh----cC--------CcHhHHhHHHHHHHHHhhccCCCC
Q 028416 105 EGP--SLLPDDPEKRKFAEELFSYSDTFIKDV-----ST-SF----KG--------DTAKEAGPAFDFLEKALDKFDDGP 164 (209)
Q Consensus 105 ~~~--~l~p~~~~~~a~~~~~~~~~~~~~~~~-----~~-~~----~~--------~~~~~~~~~l~~le~~L~~~~~~~ 164 (209)
++. +|+|.++.+++++++|..++....... .. .+ .. ....++.+.|+.||+.|+ +++
T Consensus 79 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~ 155 (214)
T PLN02473 79 ADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLA---TNR 155 (214)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhc---cCC
Confidence 753 689999999999999998776433211 01 01 01 123567889999999998 789
Q ss_pred cccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 165 FFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 165 yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
|++|+ +|+||+++++.+.++..... ..++.+++|+|.+|++|
T Consensus 156 ~l~Gd~~t~ADi~~~~~~~~~~~~~~---~~~~~~~~P~l~~w~~~ 198 (214)
T PLN02473 156 YLGGDEFTLADLTHMPGMRYIMNETS---LSGLVTSRENLNRWWNE 198 (214)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhccc---cHHHHhcCHHHHHHHHH
Confidence 99999 99999999998876542211 11234789999999975
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=99.97 E-value=6.4e-30 Score=197.71 Aligned_cols=171 Identities=19% Similarity=0.333 Sum_probs=135.7
Q ss_pred CCceEEEeeC--CCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHH
Q 028416 26 DGTTRLYMAY--TCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYV 100 (209)
Q Consensus 26 ~~~~~Ly~~~--~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL 100 (209)
..+++||+.+ .||+|+||+++|+++||+ |+.+.++... ..++|++ +||.|+||+|++||.+|+||.+|++||
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~--~e~~~v~~~~~~~~~~~~~~-~nP~g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLP--FELKTVDLDAGEHLQPTYQG-YSLTRRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCC--CeEEEeCCCCccccCHHHHh-cCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 3458999975 699999999999999997 6777777653 4577887 999999999999999999999999999
Q ss_pred HhcCCCCC---CCCCCHHHHHHHHHHHHhhh-hhHHHHH--------hhh-----cCCcHhHHhHHHHHHHHHhhccCCC
Q 028416 101 DSNFEGPS---LLPDDPEKRKFAEELFSYSD-TFIKDVS--------TSF-----KGDTAKEAGPAFDFLEKALDKFDDG 163 (209)
Q Consensus 101 ~~~~~~~~---l~p~~~~~~a~~~~~~~~~~-~~~~~~~--------~~~-----~~~~~~~~~~~l~~le~~L~~~~~~ 163 (209)
+++|+++. ++|.++.+++++++|+.++. .+..... ... .+...+++.+.|+.+|++|+. ++
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~ 157 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAP--GQ 157 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhc--CC
Confidence 99998766 99999999999999999886 4432111 000 112356788999999999973 45
Q ss_pred CcccCCCChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 164 PFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 164 ~yl~G~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
.|++|++|+||+++++.+.++... +..+ .|+|.+|++|
T Consensus 158 ~~l~G~~TlADi~l~~~l~~~~~~-----~~~~---~p~l~~~~~r 195 (214)
T PRK15113 158 PNLFGEWCIADTDLALMLNRLVLH-----GDEV---PERLADYATF 195 (214)
T ss_pred CEeeCCccHHHHHHHHHHHHHHHc-----CCCC---CHHHHHHHHH
Confidence 798888999999999998776432 3332 2888888864
No 5
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.97 E-value=6.1e-30 Score=197.92 Aligned_cols=167 Identities=21% Similarity=0.363 Sum_probs=129.7
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC---hhhhhhhcCCCCCCCeEee-----CC--eEeeehHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK---PAWYKEKVYPSNKVPSLEH-----NG--KIIGESLDLI 97 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~-----~~--~~l~eS~aI~ 97 (209)
||+||+.+ +++|+||+++|+++|++ |+.+.++...+ .++|++ +||.|+||+|++ || .+|+||.||+
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~--~e~~~v~~~~~~~~~~~~~~-iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~ 76 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELD--YRLIKVDLGKGGQFRPEFLR-ISPNNKIPAIVDHSPADGGEPLSLFESGAIL 76 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCC--cEEEEecCcccccCCHHHHh-hCcCCCCCEEEeCCCCCCCCceeEEcHHHHH
Confidence 48999877 78999999999999997 66777776432 567887 999999999996 45 4799999999
Q ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHhh---h-----------cCCcHhHHhHHHHHHHHHhhccCCC
Q 028416 98 NYVDSNFEGPSLLPDDPEKRKFAEELFSYSDTFIKDVSTS---F-----------KGDTAKEAGPAFDFLEKALDKFDDG 163 (209)
Q Consensus 98 ~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~l~~le~~L~~~~~~ 163 (209)
+||+++|+ .+.|.++.+|+++++|+.+........+.. + .+....++.+.|+.||++|+ ++
T Consensus 77 ~YL~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~ 151 (215)
T PRK13972 77 LYLAEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLE---NS 151 (215)
T ss_pred HHHHHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhc---cC
Confidence 99999986 467888899999999998876322221100 0 01123567889999999998 78
Q ss_pred CcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 164 PFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 164 ~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+|++|+ +|+||+++++.+..+... +.+ ..++|+|.+|++|
T Consensus 152 ~~l~Gd~~t~ADi~l~~~~~~~~~~-----~~~-~~~~P~l~~w~~r 192 (215)
T PRK13972 152 PWLGGENYSIADIACWPWVNAWTRQ-----RID-LAMYPAVKNWHER 192 (215)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhc-----CCc-chhCHHHHHHHHH
Confidence 999999 999999998877544321 333 3789999999975
No 6
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.9e-30 Score=196.21 Aligned_cols=169 Identities=28% Similarity=0.520 Sum_probs=137.2
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC--CChhhhhhhcCCCCCCCeEeeCCe-EeeehHHHHHHHHhcCC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ--DKPAWYKEKVYPSNKVPSLEHNGK-IIGESLDLINYVDSNFE 105 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~--~~~~~~~~~~~p~~~vP~L~~~~~-~l~eS~aI~~yL~~~~~ 105 (209)
|+||+++.||+|.||++++.++|++ |+.+.++.. ..+++|+. +||.|+||+|++++. +|+||.+|++||+++||
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~--ye~~~v~~~~~~~~~~~~~-~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~ 77 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLP--YEIVLVDLDAEQKPPDFLA-LNPLGKVPALVDDDGEVLTESGAILEYLAERYP 77 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCC--ceEEEeCcccccCCHHHHh-cCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCC
Confidence 6899999999999999999999997 677777775 46788888 999999999996554 99999999999999999
Q ss_pred CCCCCCCCHH---HHHHHHHHHHhhh-hhHHHHHh--------------hhcCCcHhHHhHHHHHHHHHhhccCCCCccc
Q 028416 106 GPSLLPDDPE---KRKFAEELFSYSD-TFIKDVST--------------SFKGDTAKEAGPAFDFLEKALDKFDDGPFFL 167 (209)
Q Consensus 106 ~~~l~p~~~~---~~a~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~l~~le~~L~~~~~~~yl~ 167 (209)
+++++|.++. +|+.+.+|+.+.. .+...+.. ...+...+.+...++.+|..|+ +++|++
T Consensus 78 ~~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~ 154 (211)
T COG0625 78 GPPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLA---DGPYLA 154 (211)
T ss_pred CCCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhc---cCCccc
Confidence 8779997774 7888888888875 22222111 1112345778999999999998 799999
Q ss_pred CC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 168 GQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 168 G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
|+ +|+||+++++.+.++... +.++ +.+|+|.+|++|
T Consensus 155 G~~~tiAD~~~~~~~~~~~~~-----~~~~-~~~p~l~~w~~r 191 (211)
T COG0625 155 GDRFTIADIALAPLLWRLALL-----GEEL-ADYPALKAWYER 191 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhhc-----Cccc-ccChHHHHHHHH
Confidence 99 999999999999875433 3443 789999999985
No 7
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-30 Score=184.45 Aligned_cols=173 Identities=27% Similarity=0.406 Sum_probs=140.9
Q ss_pred CCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC----ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 26 DGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD----KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 26 ~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~----~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
..+++||+|+.|.++||||++|..|||+ |+.+.+++-. ...+|++ +||+++||+|++||.+++||.||++||+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iD--Yey~PvnLlk~~~q~~~ef~~-iNPm~kVP~L~i~g~tl~eS~AII~YLe 79 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGID--YEYKPVNLLKEEDQSDSEFKE-INPMEKVPTLVIDGLTLTESLAIIEYLE 79 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCC--cceeehhhhcchhhhhhHHhh-cCchhhCCeEEECCEEeehHHHHHHHHH
Confidence 4689999999999999999999999996 5666666532 2457887 9999999999999999999999999999
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHhhhhhHH-----HHHhhhcC--------CcHhHHhHHHHHHHHHhhccCCCCcccC
Q 028416 102 SNFEGPSLLPDDPEKRKFAEELFSYSDTFIK-----DVSTSFKG--------DTAKEAGPAFDFLEKALDKFDDGPFFLG 168 (209)
Q Consensus 102 ~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~--------~~~~~~~~~l~~le~~L~~~~~~~yl~G 168 (209)
+.||++.|+|.++..|+.++++...+..-.+ .++..+.+ -.+..+.+.|..||..|... .++|-+|
T Consensus 80 Et~P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~-aGkycvG 158 (217)
T KOG0868|consen 80 ETYPDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSH-AGKYCVG 158 (217)
T ss_pred hcCCCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHc-cCCcccC
Confidence 9999999999999999999999888773222 12222221 13566899999999999864 6789999
Q ss_pred C-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHh
Q 028416 169 Q-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIE 208 (209)
Q Consensus 169 ~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~ 208 (209)
| +|+||+++.+.+..... +..++ ..||-+.+-.+
T Consensus 159 DevtiADl~L~pqv~nA~r-----f~vdl-~PYPti~ri~e 193 (217)
T KOG0868|consen 159 DEVTIADLCLPPQVYNANR-----FHVDL-TPYPTITRINE 193 (217)
T ss_pred ceeehhhhccchhhhhhhh-----ccccC-CcCchHHHHHH
Confidence 9 99999999998876533 35665 77888876543
No 8
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.97 E-value=4e-29 Score=191.52 Aligned_cols=171 Identities=22% Similarity=0.261 Sum_probs=136.2
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe-eCCeEeeehHHHHHHHHhcCCCC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGP 107 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~ 107 (209)
|+||++..||++++|+++|+++|++ |+.+.++...++.++.+ +||.|+||+|+ ++|.+++||.+|++||+++++++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~--ye~~~~~~~~~~~~~~~-~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGIT--FEFVNELPYNADNGVAQ-YNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCC--CeEEecCCCCCchhhhh-cCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 5899999999999999999999997 66777777666777777 99999999998 78899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhHHHHH----hhhc----------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CCh
Q 028416 108 SLLPDDPEKRKFAEELFSYSDTFIKDVS----TSFK----------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSL 172 (209)
Q Consensus 108 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~ 172 (209)
+|+|.++.+++++++|..+......... .... .....++...|+.||++|+ +++ ++|+ +|+
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~-l~Gd~~t~ 153 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLV---DGT-LKTDTVNL 153 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhc---cCc-ccCCCcCH
Confidence 8999999899999999777654332211 1111 1234568888999999998 566 9999 999
Q ss_pred hHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 173 VDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 173 AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
||+++++.+.++..... +..+..++|+|.+|++|
T Consensus 154 ADi~l~~~l~~~~~~~~---~~~~~~~~p~l~~~~~~ 187 (202)
T PRK10357 154 ATIAIACAVGYLNFRRV---APGWCVDRPHLVKLVEN 187 (202)
T ss_pred HHHHHHHHHHHHHhccc---CcchhhcChHHHHHHHH
Confidence 99999999887643211 11223679999999975
No 9
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.97 E-value=2.7e-29 Score=192.28 Aligned_cols=168 Identities=22% Similarity=0.398 Sum_probs=133.2
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC----ChhhhhhhcCCCCCCCeEe-eCCeEeeehHHHHHHHHhc
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD----KPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSN 103 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~----~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~yL~~~ 103 (209)
|+||+...| ++++++++|+++|++ |+.+.++... .++++++ +||.|+||+|+ +||.+|+||.+|++||+++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~--~e~~~v~~~~~~~~~~~~~~~-~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~ 76 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLD--FTLVSVDLAKKRLENGDDYLA-INPKGQVPALLLDDGTLLTEGVAIMQYLADS 76 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCC--ceEEEeecccccccCChHHHH-hCcCCCCCeEEeCCCcEeecHHHHHHHHHHh
Confidence 689998866 799999999999997 5666666542 3477888 99999999998 6889999999999999999
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHhhh-hhHHHHHhhhc--------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CCh
Q 028416 104 FEGPSLL-PDDPEKRKFAEELFSYSD-TFIKDVSTSFK--------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSL 172 (209)
Q Consensus 104 ~~~~~l~-p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~ 172 (209)
+++..++ |.++.+|+++++|+.++. .+...+...+. ....+++.+.|+.||+.|+ +++|++|+ +|+
T Consensus 77 ~~~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~s~ 153 (201)
T PRK10542 77 VPDRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALA---DEQWICGQRFTI 153 (201)
T ss_pred CcccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc---CCCeeeCCCCcH
Confidence 9987766 567789999999988776 33333222211 1234678899999999998 78899999 999
Q ss_pred hHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 173 VDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 173 AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
||+++++.+.+.... +.+. +.+|+|.+|+++
T Consensus 154 ADi~l~~~~~~~~~~-----~~~~-~~~p~l~~w~~~ 184 (201)
T PRK10542 154 ADAYLFTVLRWAYAV-----KLNL-EGLEHIAAYMQR 184 (201)
T ss_pred HhHHHHHHHHHhhcc-----CCCc-ccchHHHHHHHH
Confidence 999999988776332 3443 689999999974
No 10
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.96 E-value=6.3e-29 Score=191.46 Aligned_cols=170 Identities=25% Similarity=0.397 Sum_probs=134.7
Q ss_pred EEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC----CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCC
Q 028416 30 RLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ----DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFE 105 (209)
Q Consensus 30 ~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~----~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~ 105 (209)
+||++..||+++|++++|+++||+ |+.+.++.. ..++++++ +||.|+||+|++||.+++||.+|++||+++++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~~~~~~~~~-~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGID--YEYVPVNLLRDGEQRSPEFLA-LNPQGLVPTLDIDGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCC--ceEEecccccccccCChhhhh-cCCCCcCCEEEECCEEeecHHHHHHHHHHhCC
Confidence 589999999999999999999997 566666652 23567887 99999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhh-hhHH----HHHhhh------c-----CCcHhHHhHHHHHHHHHhhccCCCCcccCC
Q 028416 106 GPSLLPDDPEKRKFAEELFSYSD-TFIK----DVSTSF------K-----GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ 169 (209)
Q Consensus 106 ~~~l~p~~~~~~a~~~~~~~~~~-~~~~----~~~~~~------~-----~~~~~~~~~~l~~le~~L~~~~~~~yl~G~ 169 (209)
+.++.|.+..+++++++|+.++. .+.. .....+ . ....+.+.+.|+.||++|+.. +++|++|+
T Consensus 78 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~ 156 (210)
T TIGR01262 78 DPPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPH-AGAFCVGD 156 (210)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEeeCC
Confidence 87899999999999999988775 3221 111111 0 112345788999999999831 35799999
Q ss_pred -CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 170 -FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 170 -~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+|+||+++++.+.+.... +.. .++||+|++|+++
T Consensus 157 ~~T~ADi~~~~~l~~~~~~-----~~~-~~~~p~l~~~~~~ 191 (210)
T TIGR01262 157 TPTLADLCLVPQVYNAERF-----GVD-LTPYPTLRRIAAA 191 (210)
T ss_pred CCCHHHHHHHHHHHHHHHc-----CCC-cccchHHHHHHHH
Confidence 999999999998776432 333 3789999999974
No 11
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.96 E-value=1.3e-28 Score=191.43 Aligned_cols=173 Identities=19% Similarity=0.344 Sum_probs=130.6
Q ss_pred eCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCCC---CCCC
Q 028416 34 AYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEG---PSLL 110 (209)
Q Consensus 34 ~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~~---~~l~ 110 (209)
...||+|+||+++|.++|++ |+++.+++..++++|++ +||.|+||+|+++|.+++||.+|++||+++|+. +.+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~--~e~~~vd~~~~~~~fl~-inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~ 92 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVV--FNVTTVDLKRKPEDLQN-LAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLS 92 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCC--cEEEEECCCCCCHHHHH-HCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCC
Confidence 35699999999999999996 78888998888899998 999999999999999999999999999999975 4466
Q ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHhhhcCCcHhHHhHHHHHHHHHhhcc---------------CCCCcccCC-CChhH
Q 028416 111 PDDPEKRKFAEELFSYSDTFIKDVSTSFKGDTAKEAGPAFDFLEKALDKF---------------DDGPFFLGQ-FSLVD 174 (209)
Q Consensus 111 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~---------------~~~~yl~G~-~t~AD 174 (209)
|.++..++....+...+..+...-.....+...+++.+.|..||+.|... ++++|+.|+ +|+||
T Consensus 93 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD 172 (236)
T TIGR00862 93 PKHPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLAD 172 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhh
Confidence 66665554322111111111111000001122355889999999999721 157999999 99999
Q ss_pred HHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 175 IAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
|++++.+.++........++++.+++|+|.+|++|
T Consensus 173 ~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~ 207 (236)
T TIGR00862 173 CNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSN 207 (236)
T ss_pred HHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHH
Confidence 99999998887654444467767999999999975
No 12
>PLN02395 glutathione S-transferase
Probab=99.96 E-value=9.2e-29 Score=191.23 Aligned_cols=172 Identities=23% Similarity=0.350 Sum_probs=132.4
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcC
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~ 104 (209)
.+|||+...| +++|++++|+++|++ |+.+.++.. ..++++++ +||.|+||+|+++|.+|+||.+|++||+++|
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~--~e~~~v~~~~~~~~~~~~~~-~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVE--FETVPVDLMKGEHKQPEYLA-LQPFGVVPVIVDGDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCC--ceEEEeccccCCcCCHHHHh-hCCCCCCCEEEECCEEEEcHHHHHHHHHHHc
Confidence 3799996654 799999999999997 566666653 34677888 9999999999999999999999999999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHHHhhhh-h----HHHH----Hhhh---c------CCcHhHHhHHHHHHHHHhhccCCCC
Q 028416 105 EG--PSLLPDDPEKRKFAEELFSYSDT-F----IKDV----STSF---K------GDTAKEAGPAFDFLEKALDKFDDGP 164 (209)
Q Consensus 105 ~~--~~l~p~~~~~~a~~~~~~~~~~~-~----~~~~----~~~~---~------~~~~~~~~~~l~~le~~L~~~~~~~ 164 (209)
+. ..++|.++.+++++++|..+.+. + .... +... . ....+++.+.++.||..|+ +++
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~ 154 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLS---KSK 154 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhc---CCc
Confidence 75 35999999999999999887652 2 1111 1110 1 1234667889999999998 779
Q ss_pred cccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 165 FFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 165 yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
|++|+ +|+||+++++.+.++.... . .....+.+|+|.+|+++
T Consensus 155 ~l~G~~~s~ADi~l~~~~~~~~~~~--~-~~~~~~~~p~L~~w~~~ 197 (215)
T PLN02395 155 YLAGDFVSLADLAHLPFTEYLVGPI--G-KAYLIKDRKHVSAWWDD 197 (215)
T ss_pred cccCCCcCHHHHHHHHHHHHHhccc--c-hhhhhccCchHHHHHHH
Confidence 99999 9999999998876653210 0 11124679999999975
No 13
>PRK11752 putative S-transferase; Provisional
Probab=99.96 E-value=6.7e-28 Score=191.73 Aligned_cols=176 Identities=18% Similarity=0.245 Sum_probs=132.2
Q ss_pred CCCceEEEeeCCCchHHHHHHHHHhc------CCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEeeC----CeEee
Q 028416 25 FDGTTRLYMAYTCPFAQRVWITRNYK------GLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHN----GKIIG 91 (209)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~l~~~------gv~~~~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~----~~~l~ 91 (209)
+...|+||+.. ||+|+||+++|+++ |++ |+.+.++... .+++|++ +||.|+||+|+++ +.+|+
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~--ye~~~v~~~~~~~~~~e~~~-iNP~GkVP~Lv~~dg~~~~~L~ 116 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAE--YDAWLIRIGEGDQFSSGFVE-INPNSKIPALLDRSGNPPIRVF 116 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCc--eEEEEecCccccccCHHHHh-hCCCCCCCEEEeCCCCCCeEEE
Confidence 34469999965 99999999999997 885 6677776643 3677888 9999999999963 36899
Q ss_pred ehHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhhhhHHHH---H-hh--h-cC-------CcHhHHhHHHHHHHHHh
Q 028416 92 ESLDLINYVDSNFEGPSLLPDDPEKRKFAEELFSYSDTFIKDV---S-TS--F-KG-------DTAKEAGPAFDFLEKAL 157 (209)
Q Consensus 92 eS~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~---~-~~--~-~~-------~~~~~~~~~l~~le~~L 157 (209)
||.+|++||+++|+ +|+|.++.+++++++|+.+.......+ + .. . .+ ...+++.+.|+.||++|
T Consensus 117 ES~AIl~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L 194 (264)
T PRK11752 117 ESGAILLYLAEKFG--AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQL 194 (264)
T ss_pred cHHHHHHHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 499999999999999988876322111 1 10 0 11 12345788999999999
Q ss_pred hccCCCCcccCC-CChhHHHHHhHHHHHHHHhhh-cCCCCCCCCCchHHHhHhC
Q 028416 158 DKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSE-GFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 158 ~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~-~~~~~~~~~~p~l~~w~~r 209 (209)
+ +++|++|+ +|+|||++++.+.++...... .........+|+|.+|+++
T Consensus 195 ~---~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~r 245 (264)
T PRK11752 195 A---EHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKE 245 (264)
T ss_pred c---cCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHH
Confidence 8 78899999 999999999888766432100 0011113689999999975
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=99.96 E-value=8.1e-28 Score=185.77 Aligned_cols=168 Identities=24% Similarity=0.405 Sum_probs=126.6
Q ss_pred eeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCCCCCCCCC
Q 028416 33 MAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPSLLPD 112 (209)
Q Consensus 33 ~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~l~p~ 112 (209)
.+..||||+||+++|+++|++ |+.+.++...++++|++ +||.|+||+|++||.+|+||.+|++||+++|++..+.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~--~e~~~v~~~~~~~~~l~-inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~-- 90 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLT--YKIHLINLSDKPQWFLD-ISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK-- 90 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCC--CeEEEeCcccCCHHHHH-hCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--
Confidence 345599999999999999997 67888888888889998 9999999999999999999999999999999876553
Q ss_pred CHHHHHHHHHHHHhhhhhHHHHHhh--hcCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhh
Q 028416 113 DPEKRKFAEELFSYSDTFIKDVSTS--FKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILS 189 (209)
Q Consensus 113 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~ 189 (209)
++.+++.+...+.. . ...+... ......+.+.+.|..||++|+.. +++|++|+ +|+||+++++.+.++.....
T Consensus 91 ~~~~~a~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~ 166 (213)
T PLN02378 91 TPAEFASVGSNIFG--T-FGTFLKSKDSNDGSEHALLVELEALENHLKSH-DGPFIAGERVSAVDLSLAPKLYHLQVALG 166 (213)
T ss_pred CHHHHHHHHHHHHH--H-HHHHHhcCChhhHHHHHHHHHHHHHHHHHhcC-CCCCcCCCCCchhhHHHHHHHHHHHHHHH
Confidence 45567665543321 1 1111111 01223456788899999999731 47899999 99999999999887654322
Q ss_pred hcCCCCCCCCCchHHHhHhC
Q 028416 190 EGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 190 ~~~~~~~~~~~p~l~~w~~r 209 (209)
.....+..+++|+|.+|++|
T Consensus 167 ~~~~~~~~~~~p~l~~w~~~ 186 (213)
T PLN02378 167 HFKSWSVPESFPHVHNYMKT 186 (213)
T ss_pred HhcCCCchhHhHHHHHHHHH
Confidence 11123334789999999975
No 15
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.95 E-value=4.4e-27 Score=186.44 Aligned_cols=169 Identities=21% Similarity=0.379 Sum_probs=128.8
Q ss_pred EeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCCCCCCCC
Q 028416 32 YMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPSLLP 111 (209)
Q Consensus 32 y~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~l~p 111 (209)
+....||||+|++++|+++|++ |+.+.++...++++|++ +||.|+||+|+++|.+++||.+|++||+++|+++.+.
T Consensus 68 ~~~g~cp~s~rV~i~L~ekgi~--ye~~~vdl~~~~~~fl~-iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~- 143 (265)
T PLN02817 68 NKLGDCPFCQRVLLTLEEKHLP--YDMKLVDLTNKPEWFLK-ISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA- 143 (265)
T ss_pred CcCCCCcHHHHHHHHHHHcCCC--CEEEEeCcCcCCHHHHh-hCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC-
Confidence 3345599999999999999997 67788888888899998 9999999999988899999999999999999987664
Q ss_pred CCHHHHHHHHHHHHhhhhhHHHHHhhhc-CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhh
Q 028416 112 DDPEKRKFAEELFSYSDTFIKDVSTSFK-GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILS 189 (209)
Q Consensus 112 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~ 189 (209)
++.+++.+..++.. .+...+..... ....+++...|..||++|+. +++|++|+ +|+||+++++.+.++.....
T Consensus 144 -~~~era~i~~~l~~--~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~--~g~yl~Gd~~SlADi~l~p~L~~l~~~~~ 218 (265)
T PLN02817 144 -TPPEKASVGSKIFS--TFIGFLKSKDPGDGTEQALLDELTSFDDYIKE--NGPFINGEKISAADLSLGPKLYHLEIALG 218 (265)
T ss_pred -CHHHHHHHHHHHHH--HHHHHhccCCcchHHHHHHHHHHHHHHHHHhc--CCCeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46677777664322 11111111101 11235678889999999983 47999999 99999999999987765332
Q ss_pred hcCCCCCCCCCchHHHhHhC
Q 028416 190 EGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 190 ~~~~~~~~~~~p~l~~w~~r 209 (209)
...+.++.+.+|+|.+|+++
T Consensus 219 ~~~~~~i~~~~P~L~~w~~r 238 (265)
T PLN02817 219 HYKNWSVPDSLPFVKSYMKN 238 (265)
T ss_pred HhcCCCccccCHHHHHHHHH
Confidence 22234445789999999974
No 16
>PRK10387 glutaredoxin 2; Provisional
Probab=99.95 E-value=2.5e-27 Score=182.55 Aligned_cols=163 Identities=21% Similarity=0.351 Sum_probs=122.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe-eCCeEeeehHHHHHHHHhcCCCC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGP 107 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~ 107 (209)
|+||++..||+|+||+++|+++|++ |+.+.++..+.... .. .||.++||+|+ +||.+++||.+|++||+++|+++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~--y~~~~~~~~~~~~~-~~-~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIP--VELIVLANDDEATP-IR-MIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCC--eEEEEcCCCchhhH-HH-hcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 6899999999999999999999997 66777765433222 33 89999999995 88999999999999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhH-HHHHhhhc----------------------------------CCcHhHHhHHHHH
Q 028416 108 SLLPDDPEKRKFAEELFSYSDTFI-KDVSTSFK----------------------------------GDTAKEAGPAFDF 152 (209)
Q Consensus 108 ~l~p~~~~~~a~~~~~~~~~~~~~-~~~~~~~~----------------------------------~~~~~~~~~~l~~ 152 (209)
.+.+. +++.+++|+.+..... ..+...+. ....+++++.|+.
T Consensus 77 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (210)
T PRK10387 77 LLTGK---RSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRA 153 (210)
T ss_pred cCCCc---ccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHH
Confidence 55422 4567777776665211 11111000 1224578889999
Q ss_pred HHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 153 LEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 153 le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+|++|+ + +|++|+ +|+||+++++.+.++.... +. +.+|+|.+|++|
T Consensus 154 le~~L~---~-~~l~G~~~s~ADi~l~~~l~~~~~~~----~~---~~~p~l~~w~~r 200 (210)
T PRK10387 154 LDPLIV---K-PNAVNGELSTDDIHLFPILRNLTLVK----GI---EWPPRVADYRDN 200 (210)
T ss_pred HHHHhc---C-ccccCCCCCHHHHHHHHHHhcceeec----CC---CCCHHHHHHHHH
Confidence 999997 6 999999 9999999999998875421 22 346999999986
No 17
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.94 E-value=1.7e-25 Score=171.87 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=122.7
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhh-----h--hhcCCCCCCCeEeeCCeEeeehHHHHHH
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWY-----K--EKVYPSNKVPSLEHNGKIIGESLDLINY 99 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~-----~--~~~~p~~~vP~L~~~~~~l~eS~aI~~y 99 (209)
.+++||+++.++++.+||++|+++|++ |+.+.++. ..++++ . . .||.|+||+|++||.+++||.||++|
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~--ye~~~~~~-~~~~~~~~~~~~~~~-~nP~g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIE--YTDKRFGE-NGDAFIEFKNFKKEK-DTPFEQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCC--eEEEeccc-cchHHHHHHhccccC-CCCCCCCCEEEECCEEEecHHHHHHH
Confidence 449999999999999999999999997 56665542 122221 1 3 79999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHhh------hcCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CCh
Q 028416 100 VDSNFEGPSLLPDDPEKRKFAEELFSYSDTFIKDVSTS------FKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSL 172 (209)
Q Consensus 100 L~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~ 172 (209)
|+++|+ +.+.+..++..++.+...+..+...+... ......+.+.+.|..||+.|+++ +++|++|+ +|+
T Consensus 79 La~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~Gd~~T~ 154 (205)
T PTZ00057 79 LSKKYK---ICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKN-HCNYFVGDNLTY 154 (205)
T ss_pred HHHHcC---CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeeeCCcccH
Confidence 999997 44556555555554444333322211110 01123467889999999999742 35899999 999
Q ss_pred hHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 173 VDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 173 AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
||+++++.+.++.... +.+ .+.||+|.+|++|
T Consensus 155 AD~~l~~~~~~~~~~~----~~~-l~~~P~l~~~~~r 186 (205)
T PTZ00057 155 ADLAVFNLYDDIETKY----PNS-LKNFPLLKAHNEF 186 (205)
T ss_pred HHHHHHHHHHHHHHhC----hhh-hccChhHHHHHHH
Confidence 9999999887764321 223 3789999999875
No 18
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.5e-26 Score=175.58 Aligned_cols=173 Identities=24% Similarity=0.408 Sum_probs=141.3
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcC
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~ 104 (209)
+++||++..++.|+++.++++++|++ ++.+.++.. ..+++|+. +||.++||+|+|+|..++||.||+.||.++|
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~--~e~~~v~~~~ge~~~pefl~-~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLE--VELKPVDLVKGEQKSPEFLK-LNPLGKVPALEDGGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCc--eeEEEeeccccccCCHHHHh-cCcCCCCCeEecCCeEEeeHHHHHHHHHHHc
Confidence 58999999999999999999999996 667755553 45788887 9999999999999999999999999999999
Q ss_pred C-CCC-CCCCCHHHHHHHHHHHHhhhhhHHHH------Hhh-h---------cCCcHhHHhHHHHHHHHHhhccCCCCcc
Q 028416 105 E-GPS-LLPDDPEKRKFAEELFSYSDTFIKDV------STS-F---------KGDTAKEAGPAFDFLEKALDKFDDGPFF 166 (209)
Q Consensus 105 ~-~~~-l~p~~~~~~a~~~~~~~~~~~~~~~~------~~~-~---------~~~~~~~~~~~l~~le~~L~~~~~~~yl 166 (209)
. ... ++|.+..+|+.+++|+.+.++..... +.. + .....++++..|+.+|..|. ++.|+
T Consensus 79 ~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~---~~~yl 155 (226)
T KOG0867|consen 79 GPLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLK---TQVYL 155 (226)
T ss_pred CCCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHc---cCCcc
Confidence 6 334 89999999999999998888433222 111 1 12346889999999999999 78999
Q ss_pred cCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 167 LGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 167 ~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
.|+ +|+||+.+.+.+..+.... .+.....++|++.+|+++
T Consensus 156 ~g~~~tlADl~~~~~~~~~~~~~---~~~~~~~~~p~v~~W~~~ 196 (226)
T KOG0867|consen 156 AGDQLTLADLSLASTLSQFQGKF---ATEKDFEKYPKVARWYER 196 (226)
T ss_pred cCCcccHHHHHHhhHHHHHhHhh---hhhhhhhhChHHHHHHHH
Confidence 999 9999999999998774211 112235899999999975
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.94 E-value=9.8e-26 Score=173.66 Aligned_cols=162 Identities=21% Similarity=0.351 Sum_probs=118.9
Q ss_pred EEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe-eCCeEeeehHHHHHHHHhcCCCCC
Q 028416 30 RLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGPS 108 (209)
Q Consensus 30 ~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~~ 108 (209)
+||++..||+|+|||++|.++|++ |+.+.++..+... ..+ .||.|+||+|+ +||.+++||.+|++||+++|+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~--~e~~~~~~~~~~~-~~~-~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIP--VEKHVLLNDDEET-PIR-MIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCC--eEEEECCCCcchh-HHH-hcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 689999999999999999999997 5666665443322 244 99999999998 899999999999999999998654
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhHH-HHHhhhc----------------------------------CCcHhHHhHHHHHH
Q 028416 109 LLPDDPEKRKFAEELFSYSDTFIK-DVSTSFK----------------------------------GDTAKEAGPAFDFL 153 (209)
Q Consensus 109 l~p~~~~~~a~~~~~~~~~~~~~~-~~~~~~~----------------------------------~~~~~~~~~~l~~l 153 (209)
+.+. .++++.+|+.+...+.. .+...+. ....+.+++.|+.+
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 153 (209)
T TIGR02182 77 LTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL 153 (209)
T ss_pred CCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH
Confidence 4433 34556666655442221 1111000 12346688899999
Q ss_pred HHHhhccCCCCcccCCCChhHHHHHhHHHHHHHHhhhcCCCCCCCCCc-hHHHhHhC
Q 028416 154 EKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRP-KLAAWIEQ 209 (209)
Q Consensus 154 e~~L~~~~~~~yl~G~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p-~l~~w~~r 209 (209)
|++|+ +++|++|++|+||+++++.+.++.... + ..+| +|.+|++|
T Consensus 154 e~~L~---~~~~l~g~~TiADi~l~~~l~~~~~~~----~----~~~p~~l~~w~~R 199 (209)
T TIGR02182 154 DKLID---GPNAVNGELSEDDILVFPLLRNLTLVA----G----INWPSRVADYLDN 199 (209)
T ss_pred HHHHh---CccccCCCCCHHHHHHHHHhcCeeeec----C----CCCChHHHHHHHH
Confidence 99998 899995449999999999997764321 1 1356 99999986
No 20
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.91 E-value=7.6e-24 Score=160.95 Aligned_cols=203 Identities=20% Similarity=0.287 Sum_probs=140.0
Q ss_pred CccccccCCCcccCCCCCCCCCCCCCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCC
Q 028416 1 MASVVYENLPPVLDSKSEQPPPPLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPS 77 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~---~~~~~~~~~~p~ 77 (209)
|+.+++++.++........ .+.+. ..++||.++.|-.++|||+++.+|||. ++-..|++.. .++||.. +||.
T Consensus 1 ~s~a~k~~ea~~~~~~~~k-a~~~~-e~~vLyhhpysf~sQkVrlvi~EK~id--~~~y~V~l~~geh~epwFmr-lNp~ 75 (325)
T KOG4420|consen 1 ESDAAKPAEAPDAPEAASK-AHWPR-ESLVLYHHPYSFSSQKVRLVIAEKGID--CEEYDVSLPQGEHKEPWFMR-LNPG 75 (325)
T ss_pred CCccccccccCCCchhhcC-CCCch-hcceeeecCcccccceeeeehhhcccc--cceeeccCccccccCchhee-cCCC
Confidence 6788888844433333333 11222 239999999999999999999999994 7888888754 4799998 9999
Q ss_pred CCCCeEeeCCeEeeehHHHHHHHHhcCCCC-CCCCCC-HHHHHHHHHHHHhhh-----hhHH------H-----------
Q 028416 78 NKVPSLEHNGKIIGESLDLINYVDSNFEGP-SLLPDD-PEKRKFAEELFSYSD-----TFIK------D----------- 133 (209)
Q Consensus 78 ~~vP~L~~~~~~l~eS~aI~~yL~~~~~~~-~l~p~~-~~~~a~~~~~~~~~~-----~~~~------~----------- 133 (209)
|.||||++|..+|+++..|++|+++.|.+. .|.|+- +.+..++........ .+.. .
T Consensus 76 gevPVl~~g~~II~d~tqIIdYvErtf~ger~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~ 155 (325)
T KOG4420|consen 76 GEVPVLIHGDNIISDYTQIIDYVERTFTGERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYA 155 (325)
T ss_pred CCCceEecCCeecccHHHHHHHHHHhhcccccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccH
Confidence 999999999999999999999999998754 455532 222222222221111 0000 0
Q ss_pred ------------HHhhhc------------------------------CCcHhHHhHHHHHHHHHhhccC-CCCcccCC-
Q 028416 134 ------------VSTSFK------------------------------GDTAKEAGPAFDFLEKALDKFD-DGPFFLGQ- 169 (209)
Q Consensus 134 ------------~~~~~~------------------------------~~~~~~~~~~l~~le~~L~~~~-~~~yl~G~- 169 (209)
+..... ....+.+...|+.+|.-|++.+ -.+||+|+
T Consensus 156 ~iR~~~~k~~~~v~~l~~~e~pdla~ay~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~e 235 (325)
T KOG4420|consen 156 EIRRHLAKATTDVMKLDHEEEPDLAEAYLAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCE 235 (325)
T ss_pred HHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeecccc
Confidence 000000 0124667888888898888322 26899999
Q ss_pred CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 170 FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 170 ~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+|+||+.+...|+++...+-+..-.. ....|+|..|++|
T Consensus 236 fslADVsLg~~LhRL~~Lg~e~~yw~-~gsrpnle~Yf~r 274 (325)
T KOG4420|consen 236 FSLADVSLGATLHRLKFLGLEKKYWE-DGSRPNLESYFER 274 (325)
T ss_pred chHHHHHHHHHHHHHHHcccHHHhcc-cCCCccHHHHHHH
Confidence 99999999999999987653321112 3578999999875
No 21
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-21 Score=148.13 Aligned_cols=152 Identities=19% Similarity=0.301 Sum_probs=125.9
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCCCC
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGP 107 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 107 (209)
.++|+++...+++..+|+++++.|++ |+.+.+...+....++. ..|.|++|+|..||..|.+|.||++||+++|+
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~--fEd~r~~~~~~w~~~K~-~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g-- 77 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVS--FEDKRITMEDAWEELKD-KMPFGQLPVLEVDGKKLVQSRAILRYLARKFG-- 77 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCC--cceeeeccccchhhhcc-cCCCCCCCEEeECCEeeccHHHHHHHHHHHhC--
Confidence 48999999999999999999999997 66776766554333444 57999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhHHHHHhh-hc----C--------CcHhHHhHHHHHHHHHhhccCCCCcccCC-CChh
Q 028416 108 SLLPDDPEKRKFAEELFSYSDTFIKDVSTS-FK----G--------DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLV 173 (209)
Q Consensus 108 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~-~~----~--------~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~A 173 (209)
+.+.++.+.++++.+.+.+.++...+... +. + .........+..++..|+++ ++.|++|| +|+|
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~-~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKN-KSGFLVGDKLTWA 155 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhC-CCCeeecCcccHH
Confidence 99999999999999999888776663322 11 1 12335677888999999864 67799999 9999
Q ss_pred HHHHHhHHHHHHH
Q 028416 174 DIAYIPFVDGYQM 186 (209)
Q Consensus 174 D~~l~~~l~~~~~ 186 (209)
|+.++..+..+..
T Consensus 156 Dl~i~e~l~~l~~ 168 (206)
T KOG1695|consen 156 DLVIAEHLDTLEE 168 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988766
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.2e-21 Score=141.62 Aligned_cols=171 Identities=21% Similarity=0.422 Sum_probs=133.5
Q ss_pred CCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCCCCCCCC-CC
Q 028416 35 YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPSLLP-DD 113 (209)
Q Consensus 35 ~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~l~p-~~ 113 (209)
-.||+|+|+.+.|+.+|++ |.++.||...+++||+. +.|.+++|+|..|+.+++||..|.++|+++++.+.+.- .+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~--f~vttVd~~~kp~~f~~-~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~ 95 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVP--FKVTTVDLSRKPEWFLD-ISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAP 95 (221)
T ss_pred CCChhHHHHHHHHHHcCCC--ceEEEeecCCCcHHHHh-hCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCC
Confidence 3599999999999999996 88999999999999998 99999999999999999999999999999999765532 22
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhcCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcC
Q 028416 114 PEKRKFAEELFSYSDTFIKDVSTSFKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGF 192 (209)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~ 192 (209)
+........++..+..+...--+...+.....+...|..||++|+....++|+.|| +|.||+.|.+-|+.+..+.....
T Consensus 96 ~E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk 175 (221)
T KOG1422|consen 96 PESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYK 175 (221)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhc
Confidence 22222222333332222211111111223356778889999999852268999999 99999999999999999888777
Q ss_pred CCCCCCCCchHHHhHh
Q 028416 193 KYDATIGRPKLAAWIE 208 (209)
Q Consensus 193 ~~~~~~~~p~l~~w~~ 208 (209)
++++++..++|.+|++
T Consensus 176 ~~~IP~~lt~V~rYl~ 191 (221)
T KOG1422|consen 176 NFEIPASLTGVWRYLK 191 (221)
T ss_pred CCCCchhhhHHHHHHH
Confidence 8889999999999986
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.85 E-value=3.6e-20 Score=163.63 Aligned_cols=149 Identities=17% Similarity=0.269 Sum_probs=120.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe-eCCeEeeehHHHHHHHHhcCCCC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGP 107 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~ 107 (209)
++||+.+.| .+.++.++|++.|++ ++.+. .+|.|+||+|+ ++|.+++||.||++||++++++.
T Consensus 3 ~kLy~~~~S-~~~~v~~~L~~lgv~--~e~~~-------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDS-PPLAVIAAAKVAGVP--LTIDP-------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCC-ChHHHHHHHHHcCCC--cEEee-------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 789998877 577899999999997 45532 46899999999 68899999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhHHHHHhhhcCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHH
Q 028416 108 SLLPDDPEKRKFAEELFSYSDTFIKDVSTSFKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQM 186 (209)
Q Consensus 108 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~ 186 (209)
.|+|.++.+++++++|+.+...+.. ...+...++.||.+|+ +++||+|+ +|+||+++++.+.....
T Consensus 67 ~L~p~d~~erAqV~qWL~~~~~~~~----------~~~l~~~L~~LE~~L~---~rtYLvGd~lTLADIaL~~~L~~~~~ 133 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYAPTFSS----------GSEFENACEYVDGYLA---SRTFLVGYSLTIADIAIWSGLAGSGQ 133 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccc----------HHHHHHHHHHHHHHhc---cCCeecCCCCCHHHHHHHHHHHhhhh
Confidence 8999999999999999998764321 1246778999999998 78999999 99999999988855411
Q ss_pred HhhhcCCCCCCCCCchHHHhHhC
Q 028416 187 ILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 187 ~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
. +........+|+|.+|+++
T Consensus 134 ~---~~~~~~~~~yPnL~RW~er 153 (722)
T PLN02907 134 R---WESLRKSKKYQNLVRWFNS 153 (722)
T ss_pred h---hhcccccccCHHHHHHHHH
Confidence 1 1122224789999999974
No 24
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.81 E-value=2.8e-19 Score=119.28 Aligned_cols=87 Identities=38% Similarity=0.692 Sum_probs=76.6
Q ss_pred CcccCCCCCCCCCCCCCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeC-Ce
Q 028416 10 PPVLDSKSEQPPPPLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHN-GK 88 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~ 88 (209)
|+|+.+++..+ ++.+++++||++..||+|++++++|+++|++ |+.+.++...+++++.. .||.+++|+|+++ |.
T Consensus 2 ~~~~~~~~~~~--~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~--~~~~~v~~~~~~~~~~~-~np~~~vPvL~~~~g~ 76 (89)
T cd03055 2 SKHLAKGSAEP--PPVPGIIRLYSMRFCPYAQRARLVLAAKNIP--HEVININLKDKPDWFLE-KNPQGKVPALEIDEGK 76 (89)
T ss_pred ccccccCCCCC--CCCCCcEEEEeCCCCchHHHHHHHHHHcCCC--CeEEEeCCCCCcHHHHh-hCCCCCcCEEEECCCC
Confidence 67888888773 4788999999999999999999999999996 67777877666777887 9999999999965 89
Q ss_pred EeeehHHHHHHHH
Q 028416 89 IIGESLDLINYVD 101 (209)
Q Consensus 89 ~l~eS~aI~~yL~ 101 (209)
+++||.+|++||+
T Consensus 77 ~l~eS~aI~~yLe 89 (89)
T cd03055 77 VVYESLIICEYLD 89 (89)
T ss_pred EEECHHHHHHhhC
Confidence 9999999999985
No 25
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.80 E-value=1.7e-19 Score=116.49 Aligned_cols=74 Identities=30% Similarity=0.604 Sum_probs=69.2
Q ss_pred EEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCCCC
Q 028416 31 LYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGP 107 (209)
Q Consensus 31 Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 107 (209)
||++..||||+|+|++|+++||+ |+.+.++..++++++.. .||.++||+|++||.+++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~--~~~~~v~~~~~~~~~~~-~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIP--YELVPVDPEEKRPEFLK-LNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEE--EEEEEEBTTSTSHHHHH-HSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCe--EEEeccCcccchhHHHh-hcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999996 88888888888888888 9999999999999999999999999999999864
No 26
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.9e-19 Score=136.10 Aligned_cols=199 Identities=22% Similarity=0.300 Sum_probs=144.6
Q ss_pred CccccccCCCcc--cCCCCCCCCCCCCCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccC--CCC----------
Q 028416 1 MASVVYENLPPV--LDSKSEQPPPPLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDL--QDK---------- 66 (209)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~--~~~---------- 66 (209)
++|+.++++++- ++.+.. +++++.+.||....|||++|..+.-..||+.--+.+..++. ...
T Consensus 26 ~~s~fR~~i~~d~~~g~~~f----~~e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g 101 (324)
T COG0435 26 SSSQFRNWITADGPPGTGGF----KAEKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPG 101 (324)
T ss_pred ccchhhceeecCCCCCcCCc----CCCCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCC
Confidence 357777776632 222222 35889999999999999999999999999863233322222 000
Q ss_pred ------------hhhhhh---hcCCCCCCCeEeeC---CeEeeehHHHHHHHHhcCC-----CCCCCCCCHHHHHHHHHH
Q 028416 67 ------------PAWYKE---KVYPSNKVPSLEHN---GKIIGESLDLINYVDSNFE-----GPSLLPDDPEKRKFAEEL 123 (209)
Q Consensus 67 ------------~~~~~~---~~~p~~~vP~L~~~---~~~l~eS~aI~~yL~~~~~-----~~~l~p~~~~~~a~~~~~ 123 (209)
.+.+.. +.+..-+||+|+|. ..+-.||..|++.+...|. ...|+|+. .|.+++.+
T Consensus 102 ~t~dpl~g~~~L~~~Y~~adP~YsgRvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~ 179 (324)
T COG0435 102 ATGDPLYGIERLSQLYTRADPDYSGRVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDEL 179 (324)
T ss_pred CCCCcccchhHHHHHHhhcCCCCCCceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHH
Confidence 011111 12223489999963 3567799999999886654 24578854 68899999
Q ss_pred HHhhh-hhHHHHHhhhc-------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCC
Q 028416 124 FSYSD-TFIKDVSTSFK-------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY 194 (209)
Q Consensus 124 ~~~~~-~~~~~~~~~~~-------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~ 194 (209)
..++. .+++.++..-. ++..+++.+.|+.||..|+ ++.|++|+ +|-||+-||+.|.++..++...+++
T Consensus 180 n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~lE~~L~---~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKC 256 (324)
T COG0435 180 NKWIYDTVNNGVYKAGFATTQEAYEEAVKKLFEALDKLEQILS---ERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKC 256 (324)
T ss_pred HhhhcccccCceeeecccchHHHHHHHHHHHHHHHHHHHHHhh---cCeeeccccchHhhhhhhheeEeecceEEeeeec
Confidence 99998 66666665432 2345778899999999999 79999999 9999999999999999888777777
Q ss_pred CC--CCCCchHHHhHh
Q 028416 195 DA--TIGRPKLAAWIE 208 (209)
Q Consensus 195 ~~--~~~~p~l~~w~~ 208 (209)
++ ...||+|..|+.
T Consensus 257 N~~rI~dypnL~~yLr 272 (324)
T COG0435 257 NLRRIRDYPNLWGYLR 272 (324)
T ss_pred ccchhhcCchHHHHHH
Confidence 65 457999999985
No 27
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.77 E-value=1.8e-18 Score=114.52 Aligned_cols=71 Identities=24% Similarity=0.507 Sum_probs=66.0
Q ss_pred CCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCCCCC
Q 028416 35 YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPS 108 (209)
Q Consensus 35 ~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~ 108 (209)
..||||+|+|++|+++|++ |+++.++...++++|++ +||.|++|+|+++|.+++||.+|++||+++++.++
T Consensus 20 g~cpf~~rvrl~L~eKgi~--ye~~~vd~~~~p~~~~~-~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~~ 90 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVV--FNVTTVDMKRKPEDLKD-LAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPPK 90 (91)
T ss_pred CCChhHHHHHHHHHHCCCc--eEEEEeCCCCCCHHHHH-hCCCCCCCEEEECCEEecCHHHHHHHHHHHccCCC
Confidence 4699999999999999996 78999999899999998 99999999999999999999999999999987653
No 28
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.2e-19 Score=133.68 Aligned_cols=199 Identities=24% Similarity=0.307 Sum_probs=141.5
Q ss_pred CccccccCCCcccCCCCCCCCCCCCCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccC-CCC-------------
Q 028416 1 MASVVYENLPPVLDSKSEQPPPPLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDL-QDK------------- 66 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~-~~~------------- 66 (209)
|+|-+++..|+.. .... ++.|.+.||....|||++|..+.+..||+.-...+..+.. .+.
T Consensus 16 ~~ssfr~~iSkd~--~~~~----pakgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~n 89 (319)
T KOG2903|consen 16 QASSFRETISKDH--PIFK----PAKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIIN 89 (319)
T ss_pred eecccccccCCCC--CccC----CCCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCC
Confidence 3555666667633 3333 2349999999999999999999999999863222222221 110
Q ss_pred ------------------hhhhhhhcCC----CCCCCeEee---CCeEeeehHHHHHHHHh---cC------CCCCCCCC
Q 028416 67 ------------------PAWYKEKVYP----SNKVPSLEH---NGKIIGESLDLINYVDS---NF------EGPSLLPD 112 (209)
Q Consensus 67 ------------------~~~~~~~~~p----~~~vP~L~~---~~~~l~eS~aI~~yL~~---~~------~~~~l~p~ 112 (209)
.+.+.. .+| ..+||||+| ...+-.||..|++.+-+ .+ +.-.|+|.
T Consensus 90 Ds~~l~~~~d~~~g~k~l~elY~~-~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~ 168 (319)
T KOG2903|consen 90 DSERLGVTPDPLNGAKRLRELYYI-ASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS 168 (319)
T ss_pred chhcccCCCcccccchhHHHHHhh-cCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH
Confidence 111111 122 348999996 34567899999999983 32 33356774
Q ss_pred CHHHHHHHHHHHHhhh-hhHHHHHhhhc-------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHH
Q 028416 113 DPEKRKFAEELFSYSD-TFIKDVSTSFK-------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDG 183 (209)
Q Consensus 113 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~ 183 (209)
+ .+++++.+..|+. .+.+.++..-. +....++.+.|+.+|.+|+++ -+.|++|+ +|.||+.|++.+.+
T Consensus 169 ~--L~~~Ide~N~wvy~~INNGVYk~GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~-~~~f~~G~~LTeaDirLy~TiIR 245 (319)
T KOG2903|consen 169 S--LRAQIDETNSWVYDKINNGVYKCGFAEKQEAYEEEVNQLFEALDRCEDVLGKN-RKYFLCGDTLTEADIRLYTTIIR 245 (319)
T ss_pred H--HHHHHhhhhceecccccCceeeeccccccchHHHHHHHHHHHHHHHHHHHhcc-cceEeeccccchhheeeeeeEEe
Confidence 4 7899999999998 67777665432 134577888999999999942 23499999 99999999999999
Q ss_pred HHHHhhhcCCCCC---CCCCchHHHhHhC
Q 028416 184 YQMILSEGFKYDA---TIGRPKLAAWIEQ 209 (209)
Q Consensus 184 ~~~~~~~~~~~~~---~~~~p~l~~w~~r 209 (209)
+..++...+.++. +++||+|..|+++
T Consensus 246 FD~VY~~hFKCn~~~ir~~Yp~l~~~lk~ 274 (319)
T KOG2903|consen 246 FDEVYVQHFKCNKKTIRDEYPNLHNWLKN 274 (319)
T ss_pred ehhhhheeeecchhhhhccCcHHHHHHHH
Confidence 9998888777653 5699999999863
No 29
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.76 E-value=4.6e-18 Score=109.11 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=66.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~ 104 (209)
|+||+.+.||+|++++++|+++|++ |+.+.++....++++++ +||.|++|+|+++|.+++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVS--VEIIDVDPDNPPEDLAE-LNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCc--cEEEEcCCCCCCHHHHh-hCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999996 77778887777788887 9999999999999999999999999999875
No 30
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.75 E-value=5.1e-18 Score=108.89 Aligned_cols=70 Identities=26% Similarity=0.456 Sum_probs=62.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
++||++..|++|+||+++|+++|++ |+.+.++.. .+++++.+ +||.|+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~--~e~~~v~~~~~~~~~~~~~~-inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLR--CEEYDVSLPLSEHNEPWFMR-LNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCC--CEEEEecCCcCccCCHHHHH-hCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999997 667777653 34677888 9999999999999999999999999985
No 31
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.75 E-value=7e-18 Score=108.65 Aligned_cols=73 Identities=37% Similarity=0.568 Sum_probs=65.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCC-CCCCeEeeCCeEeeehHHHHHHHHhcC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPS-NKVPSLEHNGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~yL~~~~ 104 (209)
|+||+++.||+|+|++++|+++|++ |+.+.++...+++++++ .||. +++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~--~~~~~~~~~~~~~~~~~-~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVP--YEYVEEDLGNKSELLLA-SNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCC--CEEEEeCcccCCHHHHH-hCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999997 67777777666777887 9995 999999999999999999999999864
No 32
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=7.7e-18 Score=109.30 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=63.8
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEee--CCeEeeehHHHHHHHHhcC
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEH--NGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~--~~~~l~eS~aI~~yL~~~~ 104 (209)
|++||+++.||+|+|++++|+++|++ |+.+.++... ..++++. .||.+++|+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~--y~~~~v~~~~~~~~~~~~-~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELD--VILYPCPKGSPKRDKFLE-KGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCc--EEEEECCCChHHHHHHHH-hCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 47999999999999999999999997 6777776433 3566777 999999999995 4689999999999999875
No 33
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.73 E-value=1.9e-17 Score=105.80 Aligned_cols=69 Identities=33% Similarity=0.583 Sum_probs=62.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEee-CCeEeeehHHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEH-NGKIIGESLDLINYV 100 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~l~eS~aI~~yL 100 (209)
++||++..||+|+|++++|+++|++ |+.+.++...+++++++ +||.|+||+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~--~e~~~v~~~~~~~~~~~-~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGIT--VELREVELKNKPAEMLA-ASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCC--cEEEEeCCCCCCHHHHH-HCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 3899999999999999999999996 77888888777788888 999999999996 599999999999996
No 34
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.72 E-value=4e-17 Score=105.57 Aligned_cols=73 Identities=26% Similarity=0.341 Sum_probs=64.0
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhc
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~ 103 (209)
.++||+++.||+|++++++|+++|++ |+.+.++.. ..++++.+ +||.+++|+|+++|.+++||.+|++||+++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~-~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVD--YELVPVDLTKGEHKSPEHLA-RNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCC--cEEEEeCccccccCCHHHHh-hCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 37999999999999999999999997 666666653 34677887 999999999999999999999999999864
No 35
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.72 E-value=3.7e-17 Score=105.14 Aligned_cols=71 Identities=25% Similarity=0.390 Sum_probs=62.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHh
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~ 102 (209)
|+||+++.||+|++++++|+++|++ |+.+.++... ..+++.+ +||.|++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~--~e~~~i~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLE--LNLKEVNLMKGEHLKPEFLK-LNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCC--CEEEEecCccCCcCCHHHHh-hCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 6899999999999999999999996 6677777533 3577887 99999999999999999999999999974
No 36
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.71 E-value=7.1e-17 Score=104.46 Aligned_cols=73 Identities=21% Similarity=0.407 Sum_probs=64.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~ 104 (209)
++||+++.|++|++++++|+++|++ |+.+.++... ..+++.. +||.+++|+|+++|.+++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~--~~~~~v~~~~~~~~~~~~~~-~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIP--FEECPIDLRKGEQLTPEFKK-INPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCC--cEEEEecCCCCCcCCHHHHH-hCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999997 6677776543 3467887 9999999999999999999999999999875
No 37
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.71 E-value=7.2e-17 Score=105.71 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=64.3
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeC---CeEeeehHHHHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHN---GKIIGESLDLINYVD 101 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~---~~~l~eS~aI~~yL~ 101 (209)
+++||+++. |+|++++++|+++|++ |+.+.++.. ..++++++ +||.++||+|+++ |.+++||.+|++||+
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~--~~~~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLP--YEIHPVDISKGEQKKPEFLK-INPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCC--cEEEEecCcCCcccCHHHHH-hCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 479999885 9999999999999996 666667653 34677887 9999999999976 899999999999999
Q ss_pred hcCC
Q 028416 102 SNFE 105 (209)
Q Consensus 102 ~~~~ 105 (209)
++|+
T Consensus 77 ~~~~ 80 (81)
T cd03048 77 EKYD 80 (81)
T ss_pred HHhC
Confidence 9886
No 38
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.70 E-value=6.1e-17 Score=103.97 Aligned_cols=72 Identities=8% Similarity=0.031 Sum_probs=63.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhc
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~ 103 (209)
++||+++.|++|+++|++|+++|++ |+.+.++.....+.++. +||.+++|+|++||.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~--~e~~~v~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGIS--WEEERVTYEEWQESLKP-KMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCC--CEEEEecHHHhhhhhhc-cCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 7899999999999999999999997 66777765444556777 999999999999999999999999999864
No 39
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.68 E-value=2.2e-16 Score=101.16 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=61.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
++||+++.||+|++++++|+++|++ |+.+.++.. ..++++.+ +||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIP--YEWVEVDILKGETRTPEFLA-LNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCC--cEEEEecCCCcccCCHHHHH-hCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999996 667777653 24677887 9999999999999999999999999984
No 40
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.1e-16 Score=112.19 Aligned_cols=163 Identities=21% Similarity=0.366 Sum_probs=112.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe-eCCeEeeehHHHHHHHHhcCCCC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGP 107 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~ 107 (209)
|+||.|..||||-|+|+++..+|||.+..+-.-|-..++-. +-+.++||+|+ ++|..+.||..|+.|+++..+++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~r----miG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIR----MIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhh----hhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 68999999999999999999999985433333343344544 55688999999 89999999999999999998866
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhHHHH-Hhhh----------------------------------cCCcHhHHhHHHHH
Q 028416 108 SLLPDDPEKRKFAEELFSYSDTFIKDV-STSF----------------------------------KGDTAKEAGPAFDF 152 (209)
Q Consensus 108 ~l~p~~~~~~a~~~~~~~~~~~~~~~~-~~~~----------------------------------~~~~~~~~~~~l~~ 152 (209)
-+...- +-.++.|+..+....+.+ ++.+ ..+...++...++.
T Consensus 77 ~lt~~~---~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~ 153 (215)
T COG2999 77 LLTGKV---RPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRA 153 (215)
T ss_pred hhccCc---CHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHH
Confidence 554432 223344444444222211 1111 01235778899999
Q ss_pred HHHHhhccCCCCcccCCCChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHh
Q 028416 153 LEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIE 208 (209)
Q Consensus 153 le~~L~~~~~~~yl~G~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~ 208 (209)
++..+. +..=+-|.+++-|+.+|+.|+.+..+. ++.+. .++..|+.
T Consensus 154 l~~Li~---~~s~~n~~l~~ddi~vFplLRnlt~v~----gi~wp---s~v~dy~~ 199 (215)
T COG2999 154 LDKLIV---GPSAVNGELSEDDILVFPLLRNLTLVA----GIQWP---SRVADYRD 199 (215)
T ss_pred HHHHhc---CcchhccccchhhhhhhHHhccceecc----cCCCc---HHHHHHHH
Confidence 999887 444333449999999999998876542 55553 45666664
No 41
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.67 E-value=2.4e-16 Score=101.18 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=63.0
Q ss_pred eEEEeeCCCchHHHHHHHHHh--cCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe-eCCeEeeehHHHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNY--KGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVD 101 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~--~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~yL~ 101 (209)
++||++..||+|+|++++|++ +|++ |+.+.++...+.++++. .||.+++|+|+ +||.+++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~--~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDD--VELVLVNPWSDDESLLA-VNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCC--cEEEEcCcccCChHHHH-hCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 7886 77888887677778887 99999999998 68899999999999985
No 42
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.67 E-value=2.4e-16 Score=100.57 Aligned_cols=70 Identities=24% Similarity=0.550 Sum_probs=58.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeC-CeEeeehHHHHHHHHh
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHN-GKIIGESLDLINYVDS 102 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~~l~eS~aI~~yL~~ 102 (209)
|+||++..||||+|+|++|.++|++ |+.+.++..... ...+ .+|.+++|+|+++ |.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~--~~~~~~~~~~~~-~~~~-~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIP--VEQIILQNDDEA-TPIR-MIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCC--eEEEECCCCchH-HHHH-hcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 6899999999999999999999997 667777654333 3344 8999999999964 8999999999999974
No 43
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.67 E-value=3.2e-16 Score=100.59 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=61.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
++||+++.|+++++++++|+++|++ |+.+.++.. ...+++++ +||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~--~~~~~~~~~~~~~~~~~~~~-~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLP--YERIDAGGQFGGLDTPEFLA-MNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCC--CEEEEeccccccccCHHHHh-hCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999997 666666542 23567777 9999999999999999999999999984
No 44
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.67 E-value=2.9e-16 Score=101.30 Aligned_cols=70 Identities=27% Similarity=0.468 Sum_probs=62.3
Q ss_pred EEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC--CChhhhhhhcCCCCCCCeEee-CCeEeeehHHHHHHHHh
Q 028416 30 RLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ--DKPAWYKEKVYPSNKVPSLEH-NGKIIGESLDLINYVDS 102 (209)
Q Consensus 30 ~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~--~~~~~~~~~~~p~~~vP~L~~-~~~~l~eS~aI~~yL~~ 102 (209)
+||+++.||+|++++++|+++|++ |+.+.++.. .+++++++ +||.+++|+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~--~~~~~v~~~~~~~~~~~~~-~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLD--VEIVDFQPGKENKTPEFLK-KFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCc--eEEEecccccccCCHHHHH-hCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999996 677777764 35678888 999999999995 68999999999999975
No 45
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.67 E-value=2.2e-16 Score=101.03 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=60.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHh
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~ 102 (209)
++||+++.|++|+++|++|+++|++ |+.+.++.... ...+.. +||.+++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~--~e~~~~~~~~~~~~~~~~-~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVE--YEDVRITYEEWPELDLKP-TLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCC--cEEEEeCHHHhhhhhhcc-CCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 6899999999999999999999997 66676665433 233666 99999999999999999999999999974
No 46
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.67 E-value=2.6e-16 Score=100.98 Aligned_cols=70 Identities=33% Similarity=0.560 Sum_probs=60.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEe-eCCeEeeehHHHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVD 101 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~yL~ 101 (209)
|+||+++.||+|+|++++|+++|++ |+.+.++.. ...+++.+ +||.+++|+|+ +||.+++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~--~~~~~v~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGID--VPLVTVDLAAGEQRSPEFLA-KNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCC--ceEEEeecccCccCCHHHHh-hCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999997 566666653 23567787 99999999999 68889999999999985
No 47
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.67 E-value=4e-16 Score=101.14 Aligned_cols=73 Identities=27% Similarity=0.433 Sum_probs=62.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEeeC-CeEeeehHHHHHHHHhcC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHN-GKIIGESLDLINYVDSNF 104 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~-~~~l~eS~aI~~yL~~~~ 104 (209)
|+||+++.+ ++++++++|+++|++ |+.+.++... +++++++ +||.+++|+|+++ |.+++||.+|++||+++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~-~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~ 76 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLP--FELVRVDLRTKTQKGADYLA-INPKGQVPALVLDDGEVLTESAAILQYLADLH 76 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCC--ceEEEEecccCccCCHhHHH-hCCCCCCCEEEECCCcEEEcHHHHHHHHHHhC
Confidence 589999866 689999999999996 6677676643 4678887 9999999999965 899999999999999987
Q ss_pred C
Q 028416 105 E 105 (209)
Q Consensus 105 ~ 105 (209)
|
T Consensus 77 p 77 (77)
T cd03057 77 P 77 (77)
T ss_pred c
Confidence 5
No 48
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=116.71 Aligned_cols=70 Identities=26% Similarity=0.323 Sum_probs=59.7
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
=+++||.|..||||.|||.+|.+.|++ |++++|++-.+.+- +.+.+++||+|..+|..+.||.+|+.-|.
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgis--Y~VVEVnpV~r~eI---k~SsykKVPil~~~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGIS--YAVVEVNPVLRQEI---KWSSYKKVPILLIRGEQMVDSSVIISLLA 158 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCc--eEEEEecchhhhhc---cccccccccEEEeccceechhHHHHHHHH
Confidence 379999999999999999999999997 78999987554442 46788999999976777999999998773
No 49
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.66 E-value=5.9e-16 Score=100.00 Aligned_cols=73 Identities=26% Similarity=0.373 Sum_probs=63.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFE 105 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~ 105 (209)
++||+++. +++++++++|+++|++ |+.+.++.. .+.+++.+ +||.+++|+|+++|.+++||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLP--YELVLYDRGPGEQAPPEYLA-INPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCC--cEEEEeCCCCCccCCHHHHh-cCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58998875 6899999999999997 666667653 35677887 99999999999999999999999999999875
No 50
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.66 E-value=6.2e-16 Score=99.79 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=59.5
Q ss_pred ceEEEeeC-------CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHH
Q 028416 28 TTRLYMAY-------TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYV 100 (209)
Q Consensus 28 ~~~Ly~~~-------~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL 100 (209)
+++||++. .||+|+|++++|+++|++ |+.+.++. .. .||.|++|+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~--~~~~~~~~-------~~-~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIP--YENKFGGL-------AK-RSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCC--cEEeecCc-------cc-CCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 47899998 589999999999999997 66666653 13 899999999999999999999999999
Q ss_pred HhcCC
Q 028416 101 DSNFE 105 (209)
Q Consensus 101 ~~~~~ 105 (209)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 51
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.66 E-value=5.6e-16 Score=99.29 Aligned_cols=70 Identities=31% Similarity=0.526 Sum_probs=61.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
|+||++..|++|++++++|+++|++ |+.+.++.. ...+++++ .||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~--~~~~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLD--YEYVPVNLLKGEQLSPAYRA-LNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCC--CeEEEecCccCCcCChHHHH-hCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999997 666666653 34577887 9999999999999999999999999985
No 52
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.66 E-value=4e-16 Score=99.28 Aligned_cols=67 Identities=39% Similarity=0.649 Sum_probs=53.1
Q ss_pred CCchHHHHHHHHHhcCCCCceeEEec--cCCCChhhhhhhcCCCCCCCeEee-CCeEeeehHHHHHHHHhc
Q 028416 36 TCPFAQRVWITRNYKGLQDEIKLVAF--DLQDKPAWYKEKVYPSNKVPSLEH-NGKIIGESLDLINYVDSN 103 (209)
Q Consensus 36 ~sp~~~~v~~~l~~~gv~~~~~~~~~--~~~~~~~~~~~~~~p~~~vP~L~~-~~~~l~eS~aI~~yL~~~ 103 (209)
.|||++|++++|+++|++|+...+.. +...++++|.+ +||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~-~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLA-LNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHH-HSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhc-cCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999855444421 12334588888 999999999995 889999999999999874
No 53
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.66 E-value=1.9e-15 Score=116.00 Aligned_cols=170 Identities=17% Similarity=0.196 Sum_probs=119.7
Q ss_pred CCCCceEEEeeCC-------CchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHH
Q 028416 24 LFDGTTRLYMAYT-------CPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDL 96 (209)
Q Consensus 24 ~~~~~~~Ly~~~~-------sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI 96 (209)
...+.+-||+++. ||||.|+...|+..+|| |+.+.-. +.. .+..|++|.++-||+-+.+|..|
T Consensus 41 ~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~Ip--YE~~~~~-------~~~-rSr~G~lPFIELNGe~iaDS~~I 110 (281)
T KOG4244|consen 41 YKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIP--YEIVDCS-------LKR-RSRNGTLPFIELNGEHIADSDLI 110 (281)
T ss_pred cccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCC--ceecccc-------cee-eccCCCcceEEeCCeeccccHHH
Confidence 4557799999986 99999999999999998 4555433 222 67889999999999999999999
Q ss_pred HHHHHhcCCCCC-CCCCCHHHHHHHHHHHHhhh-hhH----------HHHH------------------hhh--------
Q 028416 97 INYVDSNFEGPS-LLPDDPEKRKFAEELFSYSD-TFI----------KDVS------------------TSF-------- 138 (209)
Q Consensus 97 ~~yL~~~~~~~~-l~p~~~~~~a~~~~~~~~~~-~~~----------~~~~------------------~~~-------- 138 (209)
+..|.+++.-+. |.++ ++++...+....+ .+. ..++ ..+
T Consensus 111 ~~~L~~hf~~~~~L~~e---~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~k 187 (281)
T KOG4244|consen 111 EDRLRKHFKIPDDLSAE---QRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKK 187 (281)
T ss_pred HHHHHHHcCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 999999987554 4433 3444444433333 100 0000 000
Q ss_pred -----c--------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHH
Q 028416 139 -----K--------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLA 204 (209)
Q Consensus 139 -----~--------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~ 204 (209)
. .+..+-+++-|+.++..|+ +++||+|+ +|-+|+++|+.|....+-......--+.+++|+|.
T Consensus 188 v~~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg---~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~ 264 (281)
T KOG4244|consen 188 VYKRSTGAIGDFESAEIDELLHRDLRAISDYLG---DKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLL 264 (281)
T ss_pred HHHHhhccccCcCHHHHHHHHHHHHHHHHHHhC---CCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHH
Confidence 0 1123556888999999998 89999999 99999999999987765111111111256799999
Q ss_pred HhHhC
Q 028416 205 AWIEQ 209 (209)
Q Consensus 205 ~w~~r 209 (209)
+|.+|
T Consensus 265 eYceR 269 (281)
T KOG4244|consen 265 EYCER 269 (281)
T ss_pred HHHHH
Confidence 99886
No 54
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.65 E-value=7e-16 Score=99.99 Aligned_cols=72 Identities=24% Similarity=0.396 Sum_probs=61.0
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeC----CeEeeehHHHHHHHHhc
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHN----GKIIGESLDLINYVDSN 103 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~----~~~l~eS~aI~~yL~~~ 103 (209)
+++||++..||+|+|++++|.++|++ |+.+.++....++ + . .||.+++|+|+++ |.+++||.+|++||+++
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~--y~~~~~~~~~~~~-~-~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIP--YEVVEVNPVSRKE-I-K-WSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCc--eEEEECCchhHHH-H-H-HhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 58999999999999999999999996 6777776543333 3 3 7999999999954 78999999999999986
Q ss_pred C
Q 028416 104 F 104 (209)
Q Consensus 104 ~ 104 (209)
.
T Consensus 76 ~ 76 (77)
T cd03040 76 L 76 (77)
T ss_pred c
Confidence 4
No 55
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.63 E-value=3e-15 Score=97.48 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=59.8
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhh----hcCCCCCCCeEeeCCeEeeehHHHHHHHHhc
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKE----KVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~----~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~ 103 (209)
+++||+++.++.+++++++|+++|++ |+.+.++.. +.+.+ ...|.++||+|++||.+++||.||++||.++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~--~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVE--FEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCC--cEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHH
Confidence 47899999999999999999999997 666666642 22222 0235899999999999999999999999998
Q ss_pred CC
Q 028416 104 FE 105 (209)
Q Consensus 104 ~~ 105 (209)
|+
T Consensus 76 ~~ 77 (79)
T cd03077 76 YN 77 (79)
T ss_pred cC
Confidence 76
No 56
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.62 E-value=2.3e-15 Score=98.71 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=59.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC----hhhhhhhcC----CCCCCCeEeeCCeEeeehHHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK----PAWYKEKVY----PSNKVPSLEHNGKIIGESLDLINYV 100 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~----~~~~~~~~~----p~~~vP~L~~~~~~l~eS~aI~~yL 100 (209)
++||++..++.|++++++|+++|++ |+.+.++...+ .+.+....| |.++||+|++||.+++||.||++||
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~--~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEK--YEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCC--cEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 4799999999999999999999996 67777776431 223322022 9999999999999999999999999
Q ss_pred HhcC
Q 028416 101 DSNF 104 (209)
Q Consensus 101 ~~~~ 104 (209)
+++|
T Consensus 79 a~~~ 82 (82)
T cd03075 79 ARKH 82 (82)
T ss_pred hhcC
Confidence 9875
No 57
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.61 E-value=6.6e-15 Score=95.16 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=57.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC---hhhhhhhcCCC-CCCCeEeeC-CeEeeehHHHHHHHHh
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK---PAWYKEKVYPS-NKVPSLEHN-GKIIGESLDLINYVDS 102 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~---~~~~~~~~~p~-~~vP~L~~~-~~~l~eS~aI~~yL~~ 102 (209)
|+|+.+...+++.++|++|+++|++ |+.+.++...+ .+++.+ .||. |++|+|+++ |.+++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~--~e~~~v~~~~~~~~~~e~~~-~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVE--YEDVRVDFEKGEHKSPEFLA-INPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT----EEEEEEETTTTGGGSHHHHH-HTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhccc--CceEEEecccccccchhhhh-cccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 4555555555999999999999996 77777776433 377777 9999 999999988 9999999999999975
No 58
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.60 E-value=3.3e-15 Score=98.50 Aligned_cols=67 Identities=22% Similarity=0.358 Sum_probs=56.2
Q ss_pred CCCchHHHHHHHHHhcCCCCceeEEeccCCCC---hhhhhhhcCCCCCCCeEeeC-CeEeeehHHHHHHHHhcCC
Q 028416 35 YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK---PAWYKEKVYPSNKVPSLEHN-GKIIGESLDLINYVDSNFE 105 (209)
Q Consensus 35 ~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~-~~~l~eS~aI~~yL~~~~~ 105 (209)
..||+|+|++++|+++|++ |+.+.++.... ..++ . +||.+++|+|+++ |.+++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~--~~~~~~~~~~~~~~~~~~-~-~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLE--YKTVPVEFPDIPPILGEL-T-SGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCC--CeEEEecCCCcccccccc-c-CCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5699999999999999997 66666665433 2334 4 8999999999987 8999999999999999875
No 59
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.56 E-value=1.7e-14 Score=92.50 Aligned_cols=65 Identities=23% Similarity=0.404 Sum_probs=56.2
Q ss_pred eCCCchHHHHHHHHHhcCCCCceeEEeccCCC--ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 34 AYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD--KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 34 ~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~--~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
...|++++|++++|+++|++ |+.+.++... ..+++++ +||.+++|+|+++|.+++||.+|++||.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~--~e~~~v~~~~~~~~~~~~~-~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIP--FEEILVPLYTPDTRARILE-FSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCC--CEEEEeCCCCccccHHHHh-hCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 46799999999999999997 6666666543 4577887 9999999999999999999999999984
No 60
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.55 E-value=3e-14 Score=89.78 Aligned_cols=70 Identities=33% Similarity=0.516 Sum_probs=60.3
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChh-hhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPA-WYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~-~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
++||+++.||+|++++++|+++|++ |+.+.++...... ++.. .+|.+++|+|+++|.++.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~--~~~~~~~~~~~~~~~~~~-~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLP--YELVPVDLGEGEQEEFLA-LNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCC--cEEEEeCCCCCCCHHHHh-cCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999997 6667776654332 4666 8999999999999999999999999984
No 61
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.48 E-value=2.6e-13 Score=86.72 Aligned_cols=64 Identities=27% Similarity=0.319 Sum_probs=55.2
Q ss_pred EEEeeC-------CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHh
Q 028416 30 RLYMAY-------TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (209)
Q Consensus 30 ~Ly~~~-------~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~ 102 (209)
+||.+. .||+|++++++|+++|++ |+.+.++.. . +||.|++|+|+++|.++.||.+|++||++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~--~~~~~~~~~-------~-~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIP--YEVVFSSNP-------W-RSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCc--eEEEecCCc-------c-cCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 566665 799999999999999997 677776641 1 78999999999999999999999999987
Q ss_pred c
Q 028416 103 N 103 (209)
Q Consensus 103 ~ 103 (209)
+
T Consensus 72 ~ 72 (72)
T cd03054 72 K 72 (72)
T ss_pred C
Confidence 5
No 62
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.33 E-value=9.4e-12 Score=83.99 Aligned_cols=90 Identities=14% Similarity=0.276 Sum_probs=71.5
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhh-hhHHHHHhhhcCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhH
Q 028416 97 INYVDSNFEGPSLLPDDPEKRKFAEELFSYSD-TFIKDVSTSFKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVD 174 (209)
Q Consensus 97 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD 174 (209)
++||++. .+++|.+..+.+.++.|++... .+. .....++...++.+|++|+ +++|++|+ +|+||
T Consensus 1 ~r~~~~~---~~~~~~~~~~~~~vd~~~d~~~~~l~--------~~~~~~~~~~l~~le~~L~---~~~fl~Gd~~tiAD 66 (96)
T cd03200 1 ARFLYRL---LGPAPNAPNAATNIDSWVDTAIFQLA--------EGSSKEKAAVLRALNSALG---RSPWLVGSEFTVAD 66 (96)
T ss_pred CchHHHH---hcccCCCchHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHc---CCCccCCCCCCHHH
Confidence 3688887 3599999999999999999765 433 1345667789999999998 78999999 99999
Q ss_pred HHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 175 IAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
|++++.+.+. +.. ...+|+|.+|++|
T Consensus 67 i~l~~~l~~~--------~~~-~~~~p~l~~w~~r 92 (96)
T cd03200 67 IVSWCALLQT--------GLA-SAAPANVQRWLKS 92 (96)
T ss_pred HHHHHHHHHc--------ccc-cccChHHHHHHHH
Confidence 9999887532 222 2679999999985
No 63
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.31 E-value=1.2e-11 Score=78.83 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=47.9
Q ss_pred CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhc
Q 028416 36 TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (209)
Q Consensus 36 ~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~ 103 (209)
.+++|.|++++|++.|+| |+.+.. .. .+ ..+|.|+||+|++||.+++||.+|+.||.++
T Consensus 16 ~~~~~~kv~~~L~elglp--ye~~~~--~~-~~----~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 16 DNASCLAVQTFLKMCNLP--FNVRCR--AN-AE----FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCHHHHHHHHHHcCCC--cEEEec--CC-cc----ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 467899999999999998 556532 11 11 2678899999999999999999999999864
No 64
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.29 E-value=5e-11 Score=83.78 Aligned_cols=97 Identities=63% Similarity=1.133 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhhhhhHHHHHhh-hcCCcHhHHhHHHHHHHHHhhccCCCCcccCCCChhHHHHHhHHHHHHHHhhhc
Q 028416 113 DPEKRKFAEELFSYSDTFIKDVSTS-FKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEG 191 (209)
Q Consensus 113 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~~t~AD~~l~~~l~~~~~~~~~~ 191 (209)
|+.+|+.+++++.+...+...++.. +.+...+.+.+.++.||+.|+.+++++|++|.+|+||+++++.+.++.......
T Consensus 1 d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Le~~L~~~~~~~fl~G~~tlADi~l~~~~~~~~~~~~~~ 80 (120)
T cd03203 1 DPAKREFADELLAYTDAFTKALYSSLIKGDPSAEAAAALDYIENALSKFDDGPFFLGQFSLVDIAYVPFIERFQIFLSEL 80 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999998855555555444 344556778999999999997322579999999999999999998765422222
Q ss_pred CCCCCCCCCchHHHhHhC
Q 028416 192 FKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 192 ~~~~~~~~~p~l~~w~~r 209 (209)
.++++.+++|+|.+|+++
T Consensus 81 ~~~~~~~~~P~l~~W~~~ 98 (120)
T cd03203 81 FNYDITEGRPNLAAWIEE 98 (120)
T ss_pred cCccccccCcHHHHHHHH
Confidence 355555789999999874
No 65
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.24 E-value=1.1e-11 Score=78.39 Aligned_cols=63 Identities=37% Similarity=0.616 Sum_probs=51.7
Q ss_pred CcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+..+++...|+.||+.|+ +++|++|+ +|+||+++++.+.++...+. +..+...+|+|.+|++|
T Consensus 6 ~~~~~~~~~l~~le~~L~---~~~fl~G~~~s~aD~~l~~~l~~~~~~~~---~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 6 RARAQLEAALDALEDHLA---DGPFLFGDRPSLADIALAPFLWRLRFVGP---DFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT---TSSBTTBSS--HHHHHHHHHHHHHHHCTH---TCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---hCCCCCCCCCCHHHHHHHHHHHHHHHhCc---CcCccccCHHHHHHHhC
Confidence 356788999999999999 77899999 99999999999999887643 22445899999999986
No 66
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.21 E-value=1.2e-10 Score=82.26 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhc-----CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhh
Q 028416 116 KRKFAEELFSYSDTFIKDVSTSFK-----GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILS 189 (209)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~ 189 (209)
+|++.+.|.++++.+...++..+. ....+.+.+.|+.+|+.|+.. +++|++|+ +|+||+++++.+.++.....
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~yl~G~~~t~aDi~~~~~~~~~~~~~~ 80 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLGAPSDREEKKAELRSALENLEEELTKR-GTPFFGGDSPGMVDYMIWPWFERLEALKL 80 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhc-CCCCcCCCCccHHHHHhhHHHHHHHHHHh
Confidence 578889999998866665555443 244677899999999999831 38999999 99999999999987765532
Q ss_pred hcCCCCCCCCCchHHHhHhC
Q 028416 190 EGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 190 ~~~~~~~~~~~p~l~~w~~r 209 (209)
........+++|+|.+|++|
T Consensus 81 ~~~~~~~~~~~p~l~~w~~r 100 (124)
T cd03184 81 LLGYEFPLDRFPKLKKWMDA 100 (124)
T ss_pred hccccCCcccChHHHHHHHH
Confidence 21111124789999999975
No 67
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.21 E-value=7.8e-11 Score=80.91 Aligned_cols=87 Identities=21% Similarity=0.266 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhhh-hHHHHHhhh------cCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHH
Q 028416 115 EKRKFAEELFSYSDT-FIKDVSTSF------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQM 186 (209)
Q Consensus 115 ~~~a~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~ 186 (209)
.+|++++.|+.+++. +...+.... .+...+.+.+.|..||+.|+ +++|++|+ +|+|||++++.+.++..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~~~~~~~~~~~ 78 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFA---HKPYFMSEEFSLVDCALAPLLWRLPA 78 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHc---CCCcccCCCCcHHHHHHHHHHHHHHH
Confidence 468899999999884 433332221 12245678889999999998 78999999 99999999998754432
Q ss_pred HhhhcCCCCCCCCCchHHHhHhC
Q 028416 187 ILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 187 ~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
. +.++...+|+|.+|+++
T Consensus 79 ~-----~~~~~~~~p~l~~w~~~ 96 (107)
T cd03186 79 L-----GIELPKQAKPLKDYMER 96 (107)
T ss_pred c-----CCCCcccchHHHHHHHH
Confidence 2 44444689999999975
No 68
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.20 E-value=1.1e-10 Score=81.67 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHhhh-hhHHHHH----h-hhcC----------------CcHhHHhHHHHHHHHHhhccCCCCcccC
Q 028416 111 PDDPEKRKFAEELFSYSD-TFIKDVS----T-SFKG----------------DTAKEAGPAFDFLEKALDKFDDGPFFLG 168 (209)
Q Consensus 111 p~~~~~~a~~~~~~~~~~-~~~~~~~----~-~~~~----------------~~~~~~~~~l~~le~~L~~~~~~~yl~G 168 (209)
|.++.+|+++++|+.+.. .+...+. . .... ....++.+.|+.||++|+ +++|++|
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G 78 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLA---KKGYFVG 78 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHc---cCCCCCC
Confidence 467889999999999886 3333221 1 1111 123568899999999998 7899999
Q ss_pred C-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 169 Q-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 169 ~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+ +|+||+++++.+.++... +.. ...+|+|.+|++|
T Consensus 79 d~~t~ADi~l~~~~~~~~~~-----~~~-~~~~p~l~~w~~~ 114 (119)
T cd03189 79 DKLTAADIMMSFPLEAALAR-----GPL-LEKYPNIAAYLER 114 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHc-----Ccc-cccCchHHHHHHH
Confidence 9 999999999888776432 222 4789999999975
No 69
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.18 E-value=1.9e-10 Score=74.73 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=64.1
Q ss_pred CCCCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 23 PLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 23 ~~~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
...+.+++||+.++||+|.+++.+|+..|++ |+.++++.....+.+.. .++..++|++..||..+.++..|.+||.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~--y~~idi~~~~~~~~~~~-~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYD--FEEIPLGNDARGRSLRA-VTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCC--cEEEECCCChHHHHHHH-HHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 3456789999999999999999999999996 67777765444455555 7788999999999999999999999984
No 70
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.18 E-value=1.5e-10 Score=80.67 Aligned_cols=89 Identities=20% Similarity=0.347 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhhh-hhHHHHHhhh-------c------------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CC
Q 028416 113 DPEKRKFAEELFSYSD-TFIKDVSTSF-------K------------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FS 171 (209)
Q Consensus 113 ~~~~~a~~~~~~~~~~-~~~~~~~~~~-------~------------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t 171 (209)
++.+|+.+++|+.++. .+...+...+ . .....++.+.|+.||+.|+ +++|++|+ +|
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~~l~gd~~t 77 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLA---GSPYVAGDRFT 77 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhc---CCCcccCCCCC
Confidence 3568999999999876 4433322111 0 1234678899999999998 78899999 99
Q ss_pred hhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 172 LVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 172 ~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+|||++++.+.++... +.++...+|+|.+|+++
T Consensus 78 ~aDi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~ 110 (117)
T cd03182 78 IADITAFVGLDFAKVV-----KLRVPEELTHLRAWYDR 110 (117)
T ss_pred HHHHHHHHHhHHHHhc-----CCCCccccHHHHHHHHH
Confidence 9999999999776543 44444689999999975
No 71
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.17 E-value=1.6e-10 Score=80.56 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhhh-hhHHHHHhhh----c-----CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhH
Q 028416 112 DDPEKRKFAEELFSYSD-TFIKDVSTSF----K-----GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPF 180 (209)
Q Consensus 112 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~-----~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~ 180 (209)
.++..++.+++|..+.+ .+.+.+.... . +...+++.+.|+.||+.|+ +++|++|+ +|+||+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~---~~~yl~Gd~~tlADi~l~~~ 78 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQ---QHSYLLGDKPSLADWAIFPF 78 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHc---cCCccCCCCccHHHHHHHHH
Confidence 35778999999999988 4444333211 1 1234678999999999998 78999999 99999999988
Q ss_pred HHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 181 VDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+.++..... .... ..++|+|.+|++|
T Consensus 79 l~~~~~~~~--~~~~-~~~~P~L~~w~~r 104 (115)
T cd03196 79 VRQFAHVDP--KWFD-QSPYPRLRRWLNG 104 (115)
T ss_pred HHHHHHhhh--cccC-cccCHHHHHHHHH
Confidence 876643211 1122 3789999999975
No 72
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.14 E-value=2.1e-10 Score=82.95 Aligned_cols=92 Identities=21% Similarity=0.274 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhhh-hhHHHHHhhhc-------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHH
Q 028416 115 EKRKFAEELFSYSD-TFIKDVSTSFK-------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQ 185 (209)
Q Consensus 115 ~~~a~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~ 185 (209)
..|+++++|++|.. .+...++.... ....+++...|+.||+.|+ +++|++|+ +|+||+++++.+.++.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~---~~~yl~Gd~~TlADi~l~~~l~~~~ 79 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLS---DRRYLLGDRLTEADIRLFTTLIRFD 79 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHc---cCCeeeCCCccHHHHHHHHHHHHHH
Confidence 35788999999998 44444443321 1235678899999999998 78999999 9999999999988765
Q ss_pred HHhhhcC--CCCCCCCCchHHHhHhC
Q 028416 186 MILSEGF--KYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 186 ~~~~~~~--~~~~~~~~p~l~~w~~r 209 (209)
....... +....+++|+|.+|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~P~L~~w~~r 105 (142)
T cd03190 80 AVYVQHFKCNLKRIRDYPNLWNYLRR 105 (142)
T ss_pred HHhhhhcccccchhhhCchHHHHHHH
Confidence 4321111 11223689999999975
No 73
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.13 E-value=1.4e-10 Score=80.32 Aligned_cols=85 Identities=22% Similarity=0.396 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhh-hhHHHHHhhh---------------cCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHH
Q 028416 116 KRKFAEELFSYSD-TFIKDVSTSF---------------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYI 178 (209)
Q Consensus 116 ~~a~~~~~~~~~~-~~~~~~~~~~---------------~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~ 178 (209)
+|+++++|+.+.. .+...+.... .+...+++.+.++.+|+.|+ +++|++|+ +|+|||+++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~---~~~~l~G~~~t~aDi~~~ 78 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLA---GGPYLLGDRFSVADAYLF 78 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhc---CCCeeeCCCcchHHHHHH
Confidence 4788888988886 3333322111 11234678899999999998 78999999 999999999
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 179 PFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+.+.++... +.+ ..++|+|.+|+++
T Consensus 79 ~~~~~~~~~-----~~~-~~~~p~l~~w~~~ 103 (114)
T cd03188 79 VVLRWAPGV-----GLD-LSDWPNLAAYLAR 103 (114)
T ss_pred HHHHHHhhc-----CCC-hhhChHHHHHHHH
Confidence 988776432 333 3689999999875
No 74
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.12 E-value=2.2e-10 Score=76.82 Aligned_cols=62 Identities=29% Similarity=0.541 Sum_probs=52.1
Q ss_pred CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCC-CCCchHHHhHhC
Q 028416 140 GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDAT-IGRPKLAAWIEQ 209 (209)
Q Consensus 140 ~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~-~~~p~l~~w~~r 209 (209)
....+++.+.|+.+|+.|+ +++|++|+ +|+||+++++.+.++.... .... +++|+|.+|++|
T Consensus 27 ~~~~~~~~~~l~~le~~l~---~~~~l~G~~~t~ADi~~~~~~~~~~~~~-----~~~~~~~~P~l~~w~~~ 90 (95)
T PF00043_consen 27 EEARAKVPRYLEVLEKRLK---GGPYLVGDKLTIADIALFPMLDWLERLG-----PDFLFEKFPKLKKWYER 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TSSSSSBSS-CHHHHHHHHHHHHHHHHT-----TTTTHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc---CCCeeeccCCchhHHHHHHHHHHHHHhC-----CCcccccCHHHHHHHHH
Confidence 3456778999999999999 89999999 9999999999999887763 3333 899999999975
No 75
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.12 E-value=3.5e-10 Score=80.51 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=54.0
Q ss_pred CcHhHHhHHHHHHHHHhhcc-------------CCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHh
Q 028416 141 DTAKEAGPAFDFLEKALDKF-------------DDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAW 206 (209)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~-------------~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w 206 (209)
...+++...|+.||++|+.- .+++|++|+ +|+|||++++.+.++..+.....++.+...+|+|.+|
T Consensus 29 ~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~aw 108 (134)
T cd03198 29 NLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLWRY 108 (134)
T ss_pred HHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHHHH
Confidence 45678999999999999830 137899999 9999999999998776543333355555789999999
Q ss_pred HhC
Q 028416 207 IEQ 209 (209)
Q Consensus 207 ~~r 209 (209)
++|
T Consensus 109 ~~r 111 (134)
T cd03198 109 LKN 111 (134)
T ss_pred HHH
Confidence 975
No 76
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.08 E-value=7.4e-10 Score=77.86 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhc--------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHH
Q 028416 116 KRKFAEELFSYSDTFIKDVSTSFK--------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQM 186 (209)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~ 186 (209)
+++.++++.+.+.++...+..... ....+.+.+.|..||++|+ +++|++|+ +|+||+++++.+.++..
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~T~aDi~l~~~~~~~~~ 78 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLG---DRPWFAGDKITYVDFLLYEALDQHRI 78 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhC---CCCCcCCCCccHHHHHHHHHHHHHHH
Confidence 467788888877766655443321 2234667889999999998 77899999 99999999999888754
Q ss_pred HhhhcCCCCCCCCCchHHHhHhC
Q 028416 187 ILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 187 ~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
.. .....++|+|.+|++|
T Consensus 79 ~~-----~~~~~~~P~l~~~~~r 96 (121)
T cd03209 79 FE-----PDCLDAFPNLKDFLER 96 (121)
T ss_pred hC-----ccccccChHHHHHHHH
Confidence 31 2224789999999875
No 77
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.9e-09 Score=80.22 Aligned_cols=167 Identities=12% Similarity=0.106 Sum_probs=112.8
Q ss_pred CCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcC
Q 028416 25 FDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~ 104 (209)
...++-|+. ..-|..|..+|+++++| |.++. ..+.+| ++|.|+||.|..|..++.|-..|+.+.+.+-
T Consensus 25 e~eQiLl~d---~ascLAVqtfLrMcnLP--f~v~~----~~Naef---mSP~G~vPllr~g~~~~aef~pIV~fVeak~ 92 (257)
T KOG3027|consen 25 EAEQILLPD---NASCLAVQTFLRMCNLP--FNVRQ----RANAEF---MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKG 92 (257)
T ss_pred ccccccccc---chhHHHHHHHHHHcCCC--ceeee----cCCccc---cCCCCCCceeeecchhhhhhhHHHHHHHHhc
Confidence 334444443 34588999999999998 44443 224444 8999999999999999999999999999874
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHhhhhhHHH--HH---------hhh----------------------------------
Q 028416 105 EGPSLL-PDDPEKRKFAEELFSYSDTFIKD--VS---------TSF---------------------------------- 138 (209)
Q Consensus 105 ~~~~l~-p~~~~~~a~~~~~~~~~~~~~~~--~~---------~~~---------------------------------- 138 (209)
- .|. ..+..+++..+..++.++.+... ++ ..+
T Consensus 93 ~--~l~s~lsE~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W 170 (257)
T KOG3027|consen 93 V--TLTSWLSEDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDW 170 (257)
T ss_pred c--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCc
Confidence 3 221 12344677777666666642211 00 000
Q ss_pred ----cCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCC-CCCCCCchHHHhHh
Q 028416 139 ----KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY-DATIGRPKLAAWIE 208 (209)
Q Consensus 139 ----~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~w~~ 208 (209)
-.+..+++....+.|+..|+ .++|+.|+ ||-+|..+|+.+..+...--....+ +..++|++|.+.-+
T Consensus 171 ~~~~~DqVie~vdkc~~aLsa~L~---~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~Llefcr 243 (257)
T KOG3027|consen 171 DDKTMDQVIEQVDKCCRALSAQLG---SQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCR 243 (257)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhc---CCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHH
Confidence 01235778889999999998 79999999 9999999999997776542111011 23567888776543
No 78
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.07 E-value=8.9e-10 Score=75.18 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhc------------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHH
Q 028416 116 KRKFAEELFSYSDTFIKDVSTSFK------------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVD 182 (209)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~ 182 (209)
++++++.+....+.+...+...+. ....+.+.+.++.||+.|... +++|++|+ +|+||+++++.+.
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~-~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKEN-GGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCeeeCCCccHHHHHHHHHHH
Confidence 466777887777666555444322 123566889999999999810 28999999 9999999999998
Q ss_pred HHHHHhhhcCCCCC-CCCCchHHHhHhC
Q 028416 183 GYQMILSEGFKYDA-TIGRPKLAAWIEQ 209 (209)
Q Consensus 183 ~~~~~~~~~~~~~~-~~~~p~l~~w~~r 209 (209)
++.... ... ...+|+|.+|++|
T Consensus 81 ~~~~~~-----~~~~~~~~p~l~~~~~~ 103 (104)
T cd03192 81 YLLYLD-----PKLLLKKYPKLKALRER 103 (104)
T ss_pred HHHhhC-----chhhHHhChhHHHHHHh
Confidence 876542 221 4789999999986
No 79
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.07 E-value=1.4e-09 Score=76.80 Aligned_cols=91 Identities=26% Similarity=0.331 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhh-hhHHHHHhhhc------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHH
Q 028416 115 EKRKFAEELFSYSD-TFIKDVSTSFK------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQM 186 (209)
Q Consensus 115 ~~~a~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~ 186 (209)
.+|+++++|+.+++ .+...+...+. ....+++.+.|+.||+.|+ +++|++|+ +|+||+++++.+.++..
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~ADi~l~~~~~~~~~ 78 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELG---GKPFFGGDTIGYVDIALGSFLGWFRA 78 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCCcchHHHHHHHHHHHHHH
Confidence 36888999998887 44333322221 2245678899999999998 68999999 99999999999988754
Q ss_pred HhhhcCCCC--CCCCCchHHHhHhC
Q 028416 187 ILSEGFKYD--ATIGRPKLAAWIEQ 209 (209)
Q Consensus 187 ~~~~~~~~~--~~~~~p~l~~w~~r 209 (209)
.... .+.+ ..+.+|+|.+|+++
T Consensus 79 ~~~~-~~~~~~~~~~~p~l~~w~~~ 102 (126)
T cd03185 79 YEEV-GGVKLLDEEKTPLLAAWAER 102 (126)
T ss_pred HHHH-cCccccCcccCchHHHHHHH
Confidence 3221 1222 13679999999874
No 80
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.03 E-value=1.1e-09 Score=75.37 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhh-hhHHHHH----hhhc-----------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHH
Q 028416 116 KRKFAEELFSYSD-TFIKDVS----TSFK-----------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYI 178 (209)
Q Consensus 116 ~~a~~~~~~~~~~-~~~~~~~----~~~~-----------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~ 178 (209)
+|+++.+|+.+.. .+...+. .... +...+++.+.|+.+|+.|+ +++|++|+ +|+||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~---~~~~l~g~~~t~aDi~~~ 78 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLA---GRPYLAGDRFTLADIPLG 78 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhC---CCCcccCCCCCHHHHHHH
Confidence 4677888877775 3332221 1110 1234678999999999998 78999999 999999999
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 179 PFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+++..+... +.. ..++|+|.+|+++
T Consensus 79 ~~~~~~~~~-----~~~-~~~~p~l~~~~~~ 103 (110)
T cd03180 79 CSAYRWFEL-----PIE-RPPLPHLERWYAR 103 (110)
T ss_pred HHHHHHHHc-----ccc-cccCchHHHHHHH
Confidence 888544322 222 4789999999975
No 81
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.02 E-value=1.5e-09 Score=75.81 Aligned_cols=86 Identities=20% Similarity=0.442 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhh-hhHHHHH----hh------hcCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHH
Q 028416 116 KRKFAEELFSYSD-TFIKDVS----TS------FKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDG 183 (209)
Q Consensus 116 ~~a~~~~~~~~~~-~~~~~~~----~~------~~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~ 183 (209)
+++++.+|+.+.. .+...+. .. ..+...+++.+.|+.||..|+ +++|++|+ +|+||+++++.+.+
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~s~aDi~l~~~~~~ 78 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLE---GSDYVAGDQLTIADLSLVATVST 78 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHc---cCCeeCCCCcCHHHHHHHHHHHH
Confidence 4677788877765 3332221 11 112245678999999999998 68899999 99999999999988
Q ss_pred HHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 184 YQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+... .+.+ ...+|+|.+|+++
T Consensus 79 ~~~~----~~~~-~~~~p~l~~w~~~ 99 (118)
T cd03177 79 LEAL----LPLD-LSKYPNVRAWLER 99 (118)
T ss_pred HHHh----cCCC-hhhCchHHHHHHH
Confidence 7531 1333 3679999999975
No 82
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.02 E-value=4.7e-10 Score=76.52 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhh-hHHHHHh---------------hhcCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHH
Q 028416 116 KRKFAEELFSYSDT-FIKDVST---------------SFKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYI 178 (209)
Q Consensus 116 ~~a~~~~~~~~~~~-~~~~~~~---------------~~~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~ 178 (209)
+|+++++|+.+.+. +...+.. .......+++.+.++.||+.|+ +++|++|+ +|+||++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~g~~~slaDi~~~ 78 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLA---GRDFLVGDALTIADIALA 78 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHc---cCccccCCCCCHHHHHHH
Confidence 47788888887752 2222110 0012345778899999999997 78899999 999999999
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 179 PFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+.+.++... +.+ ..++|+|.+|++|
T Consensus 79 ~~~~~~~~~-----~~~-~~~~p~l~~~~~~ 103 (105)
T cd03179 79 AYTHVADEG-----GFD-LADYPAIRAWLAR 103 (105)
T ss_pred HHHHhcccc-----CCC-hHhCccHHHHHHh
Confidence 998876432 334 4789999999985
No 83
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.01 E-value=1.9e-09 Score=76.31 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhh-------cCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHH
Q 028416 116 KRKFAEELFSYSDTFIKDVSTSF-------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMI 187 (209)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~ 187 (209)
+++.++++...+.++...+.... .....+.+.+.|..||+.|+.+++++|++|+ +|+||++++..+.++...
T Consensus 3 e~~~vd~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~ 82 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVL 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHh
Confidence 56777777777766555443222 1233456788999999999731135899999 999999999998877542
Q ss_pred hhhcCCCCCCCCCchHHHhHhC
Q 028416 188 LSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 188 ~~~~~~~~~~~~~p~l~~w~~r 209 (209)
. .....++|+|.+|++|
T Consensus 83 ~-----~~~~~~~P~l~~~~~r 99 (126)
T cd03210 83 A-----PGCLDAFPLLKAFVER 99 (126)
T ss_pred C-----hHhhhcChHHHHHHHH
Confidence 1 1124789999999875
No 84
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.98 E-value=3.2e-09 Score=74.67 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=51.1
Q ss_pred cHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
..+++.+.|..||..|+. +++|++|+ +|+||+++++++.++........+....+.+|+|.+|++|
T Consensus 31 ~~~~l~~~l~~Le~~L~~--~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~r 97 (121)
T cd03201 31 TEQALLDELEALEDHLKE--NGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKA 97 (121)
T ss_pred HHHHHHHHHHHHHHHHhc--CCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHH
Confidence 457789999999999983 37999999 9999999999887776432222233334789999999975
No 85
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.98 E-value=4.1e-09 Score=67.27 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=48.6
Q ss_pred CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhc
Q 028416 36 TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (209)
Q Consensus 36 ~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~ 103 (209)
.||+|.++.++|+..|++ |+++... +. ..+|.|++|+|+++|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~--~~v~~~~----n~----~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAP--LKVVPSN----NP----WRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCC--EEEEecC----CC----CCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 489999999999999997 5555322 12 2678999999999999999999999999875
No 86
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.97 E-value=1.4e-09 Score=76.85 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=52.7
Q ss_pred CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 140 GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 140 ~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+...+++++.|+.+|++|+ +++|++|+ +|+||+++++.+.+..... +.++.+.+|+|.+|++|
T Consensus 57 ~~~~~~~~~~l~~l~~~L~---~~~fl~Gd~~t~AD~~l~~~l~~~~~~~----~~~~~~~~p~l~~W~~r 120 (124)
T cd03202 57 EAALANFRAALEPLRATLK---GQPFLGGAAPNYADYIVFGGFQWARIVS----PFPLLEEDDPVYDWFER 120 (124)
T ss_pred HHHHHHHHHHHHHHHHHHc---CCCccCCCCCchhHHHHHHHHHHHHHcC----cccccccCChHHHHHHH
Confidence 4566789999999999998 78999999 9999999999998875431 33445789999999986
No 87
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.97 E-value=1.5e-09 Score=75.67 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=48.2
Q ss_pred HhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 143 AKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 143 ~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
.+.+.+.|+.||++|+ +++|++|+ +|+|||++++++.++.... .....+++|+|.+|+++
T Consensus 47 ~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~l~~~~~~~~~~~----~~~~~~~~p~l~~~~~~ 107 (118)
T cd03187 47 EEKLKKVLDVYEARLS---KSKYLAGDSFTLADLSHLPYLQYLMATP----FAKLFDSRPHVKAWWED 107 (118)
T ss_pred HHHHHHHHHHHHHHcc---cCcccCCCCccHHHHHHHHHHHHHHHcc----chhhhhcCchHHHHHHH
Confidence 4678899999999998 78999999 9999999999988775321 11123689999999975
No 88
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.97 E-value=5.7e-09 Score=66.44 Aligned_cols=71 Identities=23% Similarity=0.355 Sum_probs=59.6
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
+++||+.++||+|.+++-+|...|++ |+.++++.......+.. ..+..++|.+..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~--~~~~~v~~~~~~~~~~~-~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS--YEEIPLGKDITGRSLRA-VTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC--cEEEECCCChhHHHHHH-HhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999996 67777765443344444 6778899999999999999999999974
No 89
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.97 E-value=6.8e-10 Score=75.23 Aligned_cols=60 Identities=32% Similarity=0.521 Sum_probs=45.6
Q ss_pred cHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
..+++...+..+|++|+.+ +++|++|+ ||+||+++++.|..+.. . ++.+++|+|.+|++|
T Consensus 36 ~~~~~~~~l~~l~~~L~~~-~~~~l~G~~~T~AD~~v~~~l~~~~~------~-~~~~~~p~L~~w~~r 96 (99)
T PF14497_consen 36 SREELPKALKILEKHLAER-GGDFLVGDKPTLADIAVFGFLASLRW------A-DFPKDYPNLVRWYER 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SSSSSSSSS--HHHHHHHHHHHHHHC------C-HHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcC-CCeeecCCCCCHHHHHHHHHHHHHhh------c-ccccccHHHHHHHHh
Confidence 4678999999999999943 23399999 99999999998865531 2 222689999999985
No 90
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.96 E-value=6.4e-10 Score=76.98 Aligned_cols=60 Identities=27% Similarity=0.539 Sum_probs=49.3
Q ss_pred cHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
..+++.+.|+.+|+.|+ +++|++|+ +|+|||++++.+.++... +.+..+++|+|.+|+++
T Consensus 41 ~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~ 101 (113)
T cd03178 41 YTNEAKRLYGVLDKRLA---GRDYLAGDEYSIADIAIFPWVRRLEWI-----GIDDLDDFPNVKRWLDR 101 (113)
T ss_pred HHHHHHHHHHHHHHHHc---cCCcccCCCCCeeeeeHHHHHHHHHhc-----cccchhhchHHHHHHHH
Confidence 34678899999999998 78999999 999999999988777443 22334789999999874
No 91
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.95 E-value=4.6e-09 Score=75.51 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhc--CC---------cHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHH
Q 028416 116 KRKFAEELFSYSDTFIKDVSTSFK--GD---------TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDG 183 (209)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~ 183 (209)
+.+.++++.+.+.++...++.... .. ..+.+.+.|..||.+|+.+ +++|++|+ +|+||++++..+.+
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~-~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSH-GQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeeeCCCCCHHHHHHHHHHHH
Confidence 567788888877766655443221 11 1234578999999999742 56899999 99999999999988
Q ss_pred HHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 184 YQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+.... ......+|+|.+|++|
T Consensus 82 ~~~~~-----~~~l~~~P~l~~~~~r 102 (137)
T cd03208 82 VEELD-----PSLLSDFPLLQAFKTR 102 (137)
T ss_pred HHHhc-----hhhhccChHHHHHHHH
Confidence 75431 2224789999999875
No 92
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.95 E-value=2.1e-09 Score=75.99 Aligned_cols=60 Identities=33% Similarity=0.557 Sum_probs=47.4
Q ss_pred HhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 143 AKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 143 ~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
.+.+.+.++.+|++|.+ +++|++|+ +|+||+++++.+.+.... +.+...++|+|.+|+++
T Consensus 47 ~~~~~~~l~~le~~l~~--~~~~l~Gd~~t~ADi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~ 107 (126)
T cd03183 47 EENLEESLDLLENYFLK--DKPFLAGDEISIADLSAVCEIMQPEAA-----GYDVFEGRPKLAAWRKR 107 (126)
T ss_pred HHHHHHHHHHHHHHHhc--CCCcccCCCCCHHHHHHHHHHHHHHhc-----CCcccccCchHHHHHHH
Confidence 46688999999998542 57899999 999999999888665432 34435789999999975
No 93
>PRK10638 glutaredoxin 3; Provisional
Probab=98.94 E-value=7.1e-09 Score=67.94 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=60.8
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
+++||+.+.||||++++.+|+.+|++ |+.++++... ..+++.+ .++..++|++..||..+.+...+..+-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~--y~~~dv~~~~~~~~~l~~-~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVS--FQEIPIDGDAAKREEMIK-RSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCC--cEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 68999999999999999999999996 6778877543 3566776 8999999999999999999888877644
No 94
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.91 E-value=3.8e-09 Score=69.92 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=50.4
Q ss_pred CcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCC-CCCCCCchHHHhHhC
Q 028416 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY-DATIGRPKLAAWIEQ 209 (209)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~w~~r 209 (209)
...+++.+.++.+|+.|+ +++|++|+ +|+||+++++.+.++.......... ...+.+|+|.+|++|
T Consensus 19 ~~~~~~~~~l~~le~~L~---~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r 86 (88)
T cd03193 19 EIYSLAKKDLKALSDLLG---DKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCER 86 (88)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHH
Confidence 556789999999999999 78999999 9999999999998775321000000 013679999999986
No 95
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.89 E-value=3.6e-09 Score=74.31 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhh-hhHHHHHh----hh---------cCCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhH
Q 028416 116 KRKFAEELFSYSD-TFIKDVST----SF---------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPF 180 (209)
Q Consensus 116 ~~a~~~~~~~~~~-~~~~~~~~----~~---------~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~ 180 (209)
+|+++++|+.+++ .+...+.. .. .....+++.+.|+.||+.|+ +++|++|+ +|+||+++++.
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~---~~~~l~G~~~siaDi~l~~~ 77 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLL---KRTYLVGERLTLADIFVAGA 77 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHc---cCceeccCCccHHHHHHHHH
Confidence 3677888888876 33322211 11 11235668889999999998 78899999 99999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 181 VDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+.++..... +......+|++.+|+++
T Consensus 78 ~~~~~~~~~---~~~~~~~~p~l~~w~~~ 103 (123)
T cd03181 78 LLLGFTYVF---DKEWRAKYPNVTRWFNT 103 (123)
T ss_pred HHHHHHHHc---CHHHHHhChHHHHHHHH
Confidence 887643211 11123678999999874
No 96
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.88 E-value=5.1e-09 Score=73.43 Aligned_cols=88 Identities=24% Similarity=0.206 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhh-hhHH----HHHhhh----c-------CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHH
Q 028416 115 EKRKFAEELFSYSD-TFIK----DVSTSF----K-------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAY 177 (209)
Q Consensus 115 ~~~a~~~~~~~~~~-~~~~----~~~~~~----~-------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l 177 (209)
.+|+.+++|+.++. .+.. .++... . ....+.+.+.|+.||+.|+.. +++|++|+ +|+|||++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~ADi~~ 80 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQT-AGKFCFGDEPTLADICL 80 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeecCCcCCHHHHHH
Confidence 35788888888877 3321 111111 0 012355788999999999731 24799999 99999999
Q ss_pred HhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 178 IPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
++.+.+.... +.++ ..+|+|.+|++|
T Consensus 81 ~~~~~~~~~~-----~~~~-~~~p~l~~w~~~ 106 (121)
T cd03191 81 VPQVYNARRF-----GVDL-SPYPTIARINEA 106 (121)
T ss_pred HHHHHHHHHh-----CCCc-ccCcHHHHHHHH
Confidence 9988765432 3333 789999999975
No 97
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.87 E-value=6.5e-09 Score=71.71 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=49.7
Q ss_pred CcHhHHhHHHHHHHHHhhccC-------CCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCC----CCCCchHHHhHh
Q 028416 141 DTAKEAGPAFDFLEKALDKFD-------DGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDA----TIGRPKLAAWIE 208 (209)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~-------~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~----~~~~p~l~~w~~ 208 (209)
....++.+.|+.||.+|+... +++|++|+ +|+|||++++.+.++... +++. ...+|+|.+|++
T Consensus 29 ~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~-----~~~~~~~~~~~~P~l~~w~~ 103 (111)
T cd03204 29 KILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL-----GLSRRYWGNGKRPNLEAYFE 103 (111)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc-----CccccccccccChHHHHHHH
Confidence 456789999999999998310 12599999 999999999999887643 2222 357999999998
Q ss_pred C
Q 028416 209 Q 209 (209)
Q Consensus 209 r 209 (209)
|
T Consensus 104 r 104 (111)
T cd03204 104 R 104 (111)
T ss_pred H
Confidence 5
No 98
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.84 E-value=9.5e-09 Score=68.97 Aligned_cols=62 Identities=32% Similarity=0.510 Sum_probs=51.1
Q ss_pred cHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
..+++.+.++.||++|+ +++|++|+ +|+||+++++.+.++....... .+.+.+|+|.+|+++
T Consensus 37 ~~~~~~~~~~~l~~~L~---~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~---~~~~~~p~l~~~~~~ 99 (100)
T cd00299 37 AREELAAALAALEKLLA---GRPYLAGDRFSLADIALAPVLARLDLLGPLL---GLLDEYPRLAAWYDR 99 (100)
T ss_pred HHHHHHHHHHHHHHHHc---cCCCCCCCCcCHHHHHHHHHHHHHHHhhhhh---hhhccCccHHHHHHh
Confidence 45678999999999998 78999999 9999999999999887653211 134789999999975
No 99
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.81 E-value=1.1e-08 Score=69.38 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=48.4
Q ss_pred CcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
...+++.+.|+.+|+.|+ +++|++|+ +|+||+++++.+.+... .+.. ..++|+|.+|++|
T Consensus 33 ~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~~~~~~~~~~~-----~~~~-~~~~p~l~~~~~~ 93 (100)
T cd03206 33 TAIARAHRLLRLLEEHLA---GRDWLAGDRPTIADVAVYPYVALAPE-----GGVD-LEDYPAIRRWLAR 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHc---cCCccCCCCCCHHHHHHHHHHHHHhc-----cCCC-hhhCcHHHHHHHH
Confidence 356789999999999998 78899999 99999999988865322 1233 3789999999975
No 100
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.77 E-value=2.1e-08 Score=68.28 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=48.9
Q ss_pred cHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
...++...++.||+.|+ +++|++|+ +|+|||++++.+.++... + ...++|+|.+|++|
T Consensus 31 ~~~~~~~~l~~le~~l~---~~~~l~g~~~t~aDi~~~~~~~~~~~~-----~--~~~~~p~l~~w~~~ 89 (103)
T cd03207 31 GFGSYDDVLAALEQALA---KGPYLLGERFTAADVLVGSPLGWGLQF-----G--LLPERPAFDAYIAR 89 (103)
T ss_pred hhhhHHHHHHHHHHHHc---cCCcccCCccCHHHHHHHHHHHHHHHc-----C--CCCCChHHHHHHHH
Confidence 45679999999999998 78999999 999999999999887532 2 23689999999975
No 101
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.76 E-value=5.2e-08 Score=67.74 Aligned_cols=85 Identities=11% Similarity=0.156 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhh-hhHHHHH----hh-hc--------CCcHhHHhHHHHHHHHHhhccCCCCcccCCCChhHHHHHhH
Q 028416 115 EKRKFAEELFSYSD-TFIKDVS----TS-FK--------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPF 180 (209)
Q Consensus 115 ~~~a~~~~~~~~~~-~~~~~~~----~~-~~--------~~~~~~~~~~l~~le~~L~~~~~~~yl~G~~t~AD~~l~~~ 180 (209)
.+|+++++|+.++. ++..... .. +. +.....+.+.+..+|..|+. +++|++|++|+||+++++.
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~l~G~fSiAD~~l~~~ 79 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPP--GAANLFGEWCIADTDLALM 79 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCCcccCCccHHHHHHHHH
Confidence 46899999999998 4433211 11 11 12356678888899999962 6689999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 181 VDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+.|+... ++++ . |++.+|++|
T Consensus 80 ~~~~~~~-----g~~l-~--p~l~ay~~r 100 (114)
T cd03195 80 LNRLVLN-----GDPV-P--ERLRDYARR 100 (114)
T ss_pred HHHHHHc-----CCCC-C--HHHHHHHHH
Confidence 9887654 5554 2 888888764
No 102
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.70 E-value=1.2e-07 Score=60.53 Aligned_cols=69 Identities=26% Similarity=0.326 Sum_probs=55.6
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHH
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLIN 98 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~ 98 (209)
++++||+.+.||+|.+++.+|+.+|++ |+.++++... ..+++.+ +++..++|++..||..+.+-.....
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~--~~~~di~~~~~~~~el~~-~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLP--YVEINIDIFPERKAELEE-RTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCc--eEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEEEeCHHHHHh
Confidence 468999999999999999999999996 6777766432 2455666 8889999999999988877655543
No 103
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.65 E-value=1.3e-07 Score=61.53 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=47.6
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeee
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGE 92 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~e 92 (209)
+++||+.++||+|.+++-+|..+||+ |+.++++-......... .++..++|+++.++..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~--~~~idi~~~~~~~~~~~-~~g~~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFD--FEMINVDRVPEAAETLR-AQGFRQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCc--eEEEECCCCHHHHHHHH-HcCCCCcCEEEECCEEEec
Confidence 68999999999999999999999996 77877764332222222 4588899999987765543
No 104
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.64 E-value=2e-07 Score=59.02 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=53.9
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEeeCCeEe--eehHHHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGKII--GESLDLINYV 100 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~l--~eS~aI~~yL 100 (209)
+++||+.++||+|.+++.+|+.++++ |..++++.... .+++.+ .++...+|+++.+|..+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~--~~~vdi~~~~~~~~~~~~-~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIA--FEEIDVEKDSAAREEVLK-VLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCe--EEEEeccCCHHHHHHHHH-HhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 48999999999999999999999995 66666654322 344555 78889999999888877 5666666654
No 105
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.6e-06 Score=68.92 Aligned_cols=158 Identities=19% Similarity=0.293 Sum_probs=101.4
Q ss_pred CchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe-eCCeEeeehHHHHHHHHhcCCCCCCCCCC-H
Q 028416 37 CPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGPSLLPDD-P 114 (209)
Q Consensus 37 sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~~l~p~~-~ 114 (209)
++-|..+-++++.++-| .++...+ ..| .+|.|++|+|+ ++|..+.+-..|+.+|...-.+-.+-+.. .
T Consensus 17 d~~sL~~l~y~kl~~~~--l~v~~ss----N~~----~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~ 86 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAP--LKVVVSS----NPW----RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSA 86 (313)
T ss_pred ChhHHHHHHHHHHhCCC--ceeEeec----CCC----CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHH
Confidence 78899999999999964 3333322 233 67889999999 67799999999999998732111122221 3
Q ss_pred HHHHHHHHHHHhhh-hhHHHHHhhh-------------------------------c------------------CCcHh
Q 028416 115 EKRKFAEELFSYSD-TFIKDVSTSF-------------------------------K------------------GDTAK 144 (209)
Q Consensus 115 ~~~a~~~~~~~~~~-~~~~~~~~~~-------------------------------~------------------~~~~~ 144 (209)
.+.+....+..++. .+...+...+ + .+...
T Consensus 87 kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~ 166 (313)
T KOG3028|consen 87 KQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYK 166 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHH
Confidence 45555555555555 2222211100 0 01124
Q ss_pred HHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCC--CCCCCCCchHHHhHh
Q 028416 145 EAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFK--YDATIGRPKLAAWIE 208 (209)
Q Consensus 145 ~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~--~~~~~~~p~l~~w~~ 208 (209)
....++..|.+.|+ .++|++|| +|.-|+.+++.+..+....-.... ..+ ..+++|.++.+
T Consensus 167 ~Aska~~~LS~~Lg---s~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l-~~~~NL~~~~~ 229 (313)
T KOG3028|consen 167 DASKALNLLSTLLG---SKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHL-LAHKNLVRYVE 229 (313)
T ss_pred HHHHHHHHHHHHhc---CceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHH-HhcchHHHHHH
Confidence 46888889999998 89999999 999999999998774333211111 122 34788888765
No 106
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.62 E-value=2e-07 Score=64.82 Aligned_cols=59 Identities=22% Similarity=0.527 Sum_probs=43.7
Q ss_pred HhHHhHHHHHHHHHhhccCCCCcccCCCChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 143 AKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 143 ~~~~~~~l~~le~~L~~~~~~~yl~G~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
.+.+.+.+..+|.+|+..++++|++|++|+||+++++++.++... +.+. .|+|.+|++|
T Consensus 43 ~~~~~~~~~~le~~l~~~~~~~yl~Gd~T~ADi~l~~~~~~~~~~-----~~~~---~P~l~~~~~r 101 (114)
T cd03194 43 QADIARIEAIWAECLARFQGGPFLFGDFSIADAFFAPVVTRFRTY-----GLPL---SPAAQAYVDA 101 (114)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHHc-----CCCC---CHHHHHHHHH
Confidence 455677788888887533267899999999999999998877432 3332 2899988875
No 107
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.61 E-value=3.1e-07 Score=57.70 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=56.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHH
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~y 99 (209)
+++|+..+||+|.+++.+|..++++ |..++++... ..+++.+ +++..++|++..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~--~~~~di~~~~~~~~~l~~-~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIE--FEEIDILEDGELREELKE-LSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCc--EEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEEEecHHHHHHh
Confidence 7899999999999999999999995 6676665433 3456666 78999999999999999999888764
No 108
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.56 E-value=6.6e-08 Score=68.46 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=50.5
Q ss_pred CcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCC-CCCCCCchHHHhHhC
Q 028416 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY-DATIGRPKLAAWIEQ 209 (209)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~w~~r 209 (209)
+....+...|+.|+..|+ +++|++|+ ||.||+++++.+..+.......... ....++|+|.+|.+|
T Consensus 57 e~~~~~~~~l~aLs~~Lg---~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~R 124 (126)
T cd03211 57 QVIEEVDQCCQALSQRLG---TQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRR 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHC---CCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHh
Confidence 345667899999999999 79999999 9999999999987775331111011 124789999999986
No 109
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.55 E-value=3.5e-07 Score=57.72 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=50.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEeeCCeEeee
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGE 92 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~e 92 (209)
+++|+..+||+|.+++.+|..+|++ |..+.++... ..+++.+ .++.+.+|+|+++|..+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~--~~~~~i~~~~~~~~~~~~-~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIP--FEEVDVDEDPEALEELKK-LNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCC--eEEEeCCCCHHHHHHHHH-HcCCcccCEEEECCEEEec
Confidence 7899999999999999999999996 6777776532 2456666 8899999999988876655
No 110
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.54 E-value=2e-07 Score=67.21 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=45.5
Q ss_pred CcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCC-CCCCCCchHHHhHhC
Q 028416 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY-DATIGRPKLAAWIEQ 209 (209)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~w~~r 209 (209)
+..+.+...++.+-+.+.. +++|++|+ +|+||+++++.+..+.... ++ ++ .++|+|.+|++|
T Consensus 79 D~r~~L~~a~~~w~~~~~~--~~~FlaGd~ptIADisvyg~l~s~e~~~----~~~Dl-~~~p~I~~W~eR 142 (149)
T cd03197 79 DVREWLYDALNTWVAALGK--DRQFHGGSKPNLADLAVYGVLRSVEGHP----AFKDM-VEETKIGEWYER 142 (149)
T ss_pred hHHHHHHHHHHHHHHHhcC--CCCccCCCCCCHHHHHHHHHHHHHHHhc----cccch-hhCcCHHHHHHH
Confidence 3455565566555555553 67899999 9999999999997775432 34 44 689999999985
No 111
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.50 E-value=9.6e-07 Score=56.38 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=55.3
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCC-CCCeEeeCCeEeeehHHHHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSN-KVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~-~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
+++||+.+.||+|.+++-+|+.+|++ |+.++++... ..+++.+ ..+.. ++|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~--~~~i~i~~~~~~~~~~~~-~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVD--YEEIDVDGDPALREEMIN-RSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCc--EEEEECCCCHHHHHHHHH-HhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 47899999999999999999999996 7777776431 2233433 44444 89999999999999888887643
No 112
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.50 E-value=3e-07 Score=62.02 Aligned_cols=59 Identities=27% Similarity=0.345 Sum_probs=47.3
Q ss_pred cHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
...++.+.|+.+|++|+ +++| + +|+||+++++.+.+...... +.....++|+|.+|++|
T Consensus 38 ~~~~~~~~l~~le~~L~---~~~~---d~~TlADi~l~~~l~~~~~~~~---~~~~~~~~p~l~~w~~r 97 (98)
T cd03205 38 QRGKIERALDALEAELA---KLPL---DPLDLADIAVACALGYLDFRHP---DLDWRAAHPALAAWYAR 97 (98)
T ss_pred HHHHHHHHHHHHHHhhh---hCCC---CCCCHHHHHHHHHHHHHHhHcc---CcchhhhChHHHHHHHh
Confidence 45778999999999998 7788 7 99999999999988754311 23334789999999986
No 113
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.46 E-value=5.5e-07 Score=57.63 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=52.8
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcC-CCCCCCeEe-eCCeEeeeh--HHHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVY-PSNKVPSLE-HNGKIIGES--LDLINYV 100 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~-~~~~~~~~~-p~~~vP~L~-~~~~~l~eS--~aI~~yL 100 (209)
+++||+..+||+|.+++..|...|++ |+.++++-... .+++.. ++ +...+|+++ ++|..+.++ ..|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~--~~~idi~~~~~~~~~~~~-~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAA--YEWVDIEEDEGAADRVVS-VNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCc--eEEEeCcCCHhHHHHHHH-HhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 47999999999999999999999996 67777664433 455555 76 889999997 677776653 3444444
No 114
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.38 E-value=2.7e-07 Score=66.31 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=50.3
Q ss_pred CCcHhHHhHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHHHHHHHHhhhcCCC-CCCCCCchHHHhHhC
Q 028416 140 GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY-DATIGRPKLAAWIEQ 209 (209)
Q Consensus 140 ~~~~~~~~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~w~~r 209 (209)
++..+.+...++.||+.|+ +++|++|+ +|++|+++++++..+.......... ....++|+|.+|++|
T Consensus 63 ~~~~~~a~~~l~~l~~~L~---~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~r 131 (137)
T cd03212 63 AEIYRDAKECLNLLSQRLG---ESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDR 131 (137)
T ss_pred HHHHHHHHHHHHHHHHHHC---CCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHH
Confidence 3455678889999999999 78999999 9999999999987665321110011 124789999999985
No 115
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.38 E-value=3.6e-06 Score=55.25 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=59.1
Q ss_pred ceEEEeeCCCchHHHHHHHHHh-----cCCCCceeEEeccCCC-ChhhhhhhcCC--CCCCCeEeeCCeEeeehHHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNY-----KGLQDEIKLVAFDLQD-KPAWYKEKVYP--SNKVPSLEHNGKIIGESLDLINY 99 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~-----~gv~~~~~~~~~~~~~-~~~~~~~~~~p--~~~vP~L~~~~~~l~eS~aI~~y 99 (209)
++++|+.++||+|.+++-+|+. .|++ |+.++++... ..+.+.. ... ..++|.+..||..+.+...|.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~--~~~idi~~~~~~~~el~~-~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFD--YRYVDIHAEGISKADLEK-TVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCc--EEEEECCCChHHHHHHHH-HHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999 7885 6777666432 1333443 333 36899999999999999999999
Q ss_pred HHhcCC
Q 028416 100 VDSNFE 105 (209)
Q Consensus 100 L~~~~~ 105 (209)
+.+.++
T Consensus 79 ~~~~~~ 84 (85)
T PRK11200 79 VKENLG 84 (85)
T ss_pred HHHhcc
Confidence 988764
No 116
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.2e-06 Score=54.32 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=52.7
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC--ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD--KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~--~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~y 99 (209)
.+++|+.++||||.++.-+|..+|++ |+.+.++... ..+.+....++..++|++..|+..+.....+.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~--~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVD--YEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCC--cEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHH
Confidence 58999999999999999999999995 6777776655 3333333256889999999888766654444443
No 117
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.35 E-value=4.8e-06 Score=54.84 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=57.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCC---CceeEEeccCCC-ChhhhhhhcCCC--CCCCeEeeCCeEeeehHHHHHHHHh
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQ---DEIKLVAFDLQD-KPAWYKEKVYPS--NKVPSLEHNGKIIGESLDLINYVDS 102 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~---~~~~~~~~~~~~-~~~~~~~~~~p~--~~vP~L~~~~~~l~eS~aI~~yL~~ 102 (209)
+++|+.++||||.+++-+|..++++ +.|+.++++... ..+.+.+ .... .+||++..||..+.++..|..++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~-~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEK-TVGKPVETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHH-HhCCCCCCcCeEEECCEEecCHHHHHHHHHh
Confidence 6899999999999999999999753 235555555322 1333444 4333 6899999999999999999999988
Q ss_pred cCC
Q 028416 103 NFE 105 (209)
Q Consensus 103 ~~~ 105 (209)
+++
T Consensus 81 ~~~ 83 (86)
T TIGR02183 81 NFD 83 (86)
T ss_pred ccc
Confidence 764
No 118
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.33 E-value=3.5e-06 Score=54.44 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=57.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHh
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~ 102 (209)
+++|+.+.||+|.+++-+|+.+|++ |+.++++... ..+++.+ ..+...+|++..+|..+.+...+..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~--~~~~di~~~~~~~~~~~~-~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVT--FTEIRVDGDPALRDEMMQ-RSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCC--cEEEEecCCHHHHHHHHH-HhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 5899999999999999999999996 6777776432 2344544 66788999999999999998888877554
No 119
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.33 E-value=2e-06 Score=54.58 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=43.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEeeCCe
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGK 88 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~ 88 (209)
++||+.+.||+|.+++-+|+.+|++ |+.++++-... .+++. ..+...+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~--~~~~di~~~~~~~~~~~--~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIA--FEEINIDEQPEAIDYVK--AQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCc--eEEEECCCCHHHHHHHH--HcCCcccCEEEECCC
Confidence 5899999999999999999999996 77777764332 23332 347779999996553
No 120
>PHA03050 glutaredoxin; Provisional
Probab=98.28 E-value=9.2e-06 Score=55.82 Aligned_cols=74 Identities=16% Similarity=0.363 Sum_probs=58.3
Q ss_pred CCCceEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCC-C---hhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHH
Q 028416 25 FDGTTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQD-K---PAWYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (209)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~-~~~~~~~~~~~-~---~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~y 99 (209)
...++++|+.++||||.+++-+|...|+++ +|+.++++-.. + .+++.+ .+...+||.+..+|..+.+...+...
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~-~tG~~tVP~IfI~g~~iGG~ddl~~l 89 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQ-ITGGRTVPRIFFGKTSIGGYSDLLEI 89 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHH-HcCCCCcCEEEECCEEEeChHHHHHH
Confidence 346799999999999999999999999942 37777777422 2 345555 77888999999999998887777663
No 121
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.27 E-value=1.1e-05 Score=52.33 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=59.2
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCCh----hhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHh
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKP----AWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~----~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~ 102 (209)
++++|+..+||+|.+++-+|...+++ |+.++++..+.. ..+.+ .....++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVK--PAVVELDQHEDGSEIQDYLQE-LTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCC--cEEEEEeCCCChHHHHHHHHH-HhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 37899999999999999999999995 777777765442 23444 66778999999999999999999998765
No 122
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.26 E-value=2e-06 Score=52.50 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=48.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC-CChhhhhhhcCCCCCCCeEeeCCeEe
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ-DKPAWYKEKVYPSNKVPSLEHNGKII 90 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~~l 90 (209)
+++|+.++||+|.+++-+|+.+|++ |+.++++.. ...+++.+ .....++|.+..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~--y~~~dv~~~~~~~~~l~~-~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIP--YEEVDVDEDEEAREELKE-LSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBE--EEEEEGGGSHHHHHHHHH-HHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCe--eeEcccccchhHHHHHHH-HcCCCccCEEEECCEEC
Confidence 5899999999999999999999995 788888765 34555555 66789999999888654
No 123
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.25 E-value=1.4e-05 Score=53.99 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=57.9
Q ss_pred CCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hh---hhhhhcCCCCCCCeEeeCCeEeeehHHHHHHH
Q 028416 25 FDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PA---WYKEKVYPSNKVPSLEHNGKIIGESLDLINYV 100 (209)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~-~~---~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL 100 (209)
....+++|+.++||||.+++-+|...|++ |+.++++.... .+ .+.. ..+..++|.+..+|..+.+...+....
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~--~~~vdid~~~~~~~~~~~l~~-~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVN--PAVHEIDKEPAGKDIENALSR-LGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCC--CEEEEcCCCccHHHHHHHHHH-hcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 34679999999999999999999999996 67888875433 22 2333 567889999999999998887777653
No 124
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.17 E-value=1e-05 Score=55.20 Aligned_cols=94 Identities=16% Similarity=0.301 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhhhhhHHHHHhh--------------hcCCcHhHHhHHHHHHHHHhhccCCCCcccCCCChhHHHHH
Q 028416 113 DPEKRKFAEELFSYSDTFIKDVSTS--------------FKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYI 178 (209)
Q Consensus 113 ~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~le~~L~~~~~~~yl~G~~t~AD~~l~ 178 (209)
|..+|++++++..|..+-+..+... +.+..+..+.+.+...+..|.. |++||+|+.|+||..+.
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~--g~~~LFGewsIAD~dlA 78 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD--GGPNLFGEWSIADADLA 78 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT----SSTTSS--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc--CCCCccccchHHHHHHH
Confidence 3568999999999998432222211 1234567788889999999985 89999999999999999
Q ss_pred hHHHHHHHHhhhc----CCC-CCCCCCchHHHhHh
Q 028416 179 PFVDGYQMILSEG----FKY-DATIGRPKLAAWIE 208 (209)
Q Consensus 179 ~~l~~~~~~~~~~----~~~-~~~~~~p~l~~w~~ 208 (209)
.++.++...+-.. ..+ ...=..|.+++|+.
T Consensus 79 ~ml~Rl~~~gd~vP~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 79 LMLNRLVTYGDPVPERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHHTTT----HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHCCHHHHHHHH
Confidence 9999987532111 001 01125688888864
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.08 E-value=4.5e-05 Score=49.52 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=58.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChh----hhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHh
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPA----WYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~----~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~ 102 (209)
+++|+.++||+|.+++-+|...+++..|+.++++.....+ .+.+ .....++|.+..+|..+.++..+.+...+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~-~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEE-ITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHH-HhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999986336777777654322 2333 56677999999999999999999888664
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.00 E-value=6.6e-05 Score=50.54 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=55.6
Q ss_pred CCCceEEEee-----CCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEeeCCeEeeehHHHHH
Q 028416 25 FDGTTRLYMA-----YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGKIIGESLDLIN 98 (209)
Q Consensus 25 ~~~~~~Ly~~-----~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~ 98 (209)
..+++.+|.- ++||||.+++-+|..+|++ |+.++++-... ...+.+ .+...++|.+..||..+.+...+..
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~--~~~~di~~~~~~~~~l~~-~tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVP--FAYVNVLEDPEIRQGIKE-YSNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC--EEEEECCCCHHHHHHHHH-HhCCCCCCEEEECCEEEeChHHHHH
Confidence 3467899965 7899999999999999996 66666642211 234444 6777899999999998888777776
Q ss_pred HHH
Q 028416 99 YVD 101 (209)
Q Consensus 99 yL~ 101 (209)
...
T Consensus 87 l~~ 89 (97)
T TIGR00365 87 MYQ 89 (97)
T ss_pred HHH
Confidence 543
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.88 E-value=0.00014 Score=48.26 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=56.0
Q ss_pred CCceEEEee-----CCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHH
Q 028416 26 DGTTRLYMA-----YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (209)
Q Consensus 26 ~~~~~Ly~~-----~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~y 99 (209)
...+++|.. ++||||.+++-+|...|++ |+.++++.... .+.+.+ .....++|.+..+|..+.+...+...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~--y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD--FGTFDILEDEEVRQGLKE-YSNWPTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC--eEEEEcCCCHHHHHHHHH-HhCCCCCCEEEECCEEEeCHHHHHHH
Confidence 456888976 5899999999999999996 77777653321 244444 67778999999999999888887775
Q ss_pred HH
Q 028416 100 VD 101 (209)
Q Consensus 100 L~ 101 (209)
..
T Consensus 84 ~~ 85 (90)
T cd03028 84 HE 85 (90)
T ss_pred HH
Confidence 43
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.80 E-value=0.00014 Score=46.10 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHhcCCCCc-eeEEeccCCCChhhhhhhcCCCCCCCeEee-CCeEeeehHHHHHHH
Q 028416 36 TCPFAQRVWITRNYKGLQDE-IKLVAFDLQDKPAWYKEKVYPSNKVPSLEH-NGKIIGESLDLINYV 100 (209)
Q Consensus 36 ~sp~~~~v~~~l~~~gv~~~-~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~l~eS~aI~~yL 100 (209)
.+|-|..+.++|+..+.+.. ++++... +. .++|.|++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~----n~----~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN----NP----WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC----CC----CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 48899999999999999732 5554432 22 2789999999998 999999999999998
No 129
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.30 E-value=0.0036 Score=44.09 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=45.6
Q ss_pred CcHhHHhHHHHHHHHHhhccCCCCcccCCCChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~yl~G~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+..++++..|..++..+. ......|.+|+.|+.+|++|+.+..+. ++.+. |+|..|+++
T Consensus 60 ~~i~~l~~~L~~l~~ll~---~~~~~n~~ls~DDi~lFp~LR~Lt~vk----gi~~P---~~V~~Y~~~ 118 (128)
T cd03199 60 QYIAALNALLEELDPLIL---SSEAVNGQLSTDDIILFPILRNLTLVK----GLVFP---PKVKAYLER 118 (128)
T ss_pred HHHHHHHHHHHHHHHHHc---CccccCCcCCHHHHHHHHHHhhhhhhc----CCCCC---HHHHHHHHH
Confidence 567889999999999995 233333349999999999999987763 55554 889999874
No 130
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.21 E-value=0.0017 Score=55.05 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=52.0
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhc--------CCCCCCCeEeeCCeEeeehHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKV--------YPSNKVPSLEHNGKIIGESLDLIN 98 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~--------~p~~~vP~L~~~~~~l~eS~aI~~ 98 (209)
++++|+-++||+|.++.-+|..+||+ |+.++++-......+.++. .+..+||.+..||..+.+-..+..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~--~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIP--FTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCC--eEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 58999999999999999999999996 7788777322212211112 466799999988888887766655
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.21 E-value=0.003 Score=43.75 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCceEEEee-----CCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHH
Q 028416 26 DGTTRLYMA-----YTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (209)
Q Consensus 26 ~~~~~Ly~~-----~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~y 99 (209)
...+.+|.- +.||||.++.-+|...|++ |..++++... -...+.+ .+...++|-+..+|.-|.+...+...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~--~~~idi~~d~~~~~~l~~-~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGER--FAYVDILQNPDIRAELPK-YANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCC--ceEEEecCCHHHHHHHHH-HhCCCCCCeEEECCEEEcChHHHHHH
Confidence 356888876 4899999999999999996 5666665322 2344555 77889999999999999888777775
Q ss_pred HH
Q 028416 100 VD 101 (209)
Q Consensus 100 L~ 101 (209)
..
T Consensus 91 ~~ 92 (115)
T PRK10824 91 YQ 92 (115)
T ss_pred HH
Confidence 43
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.07 E-value=0.0046 Score=44.79 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=54.0
Q ss_pred ceEEEeeC------CCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCC----CCCCCeEeeCCeEeeehHHH
Q 028416 28 TTRLYMAY------TCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYP----SNKVPSLEHNGKIIGESLDL 96 (209)
Q Consensus 28 ~~~Ly~~~------~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~-~~~~~~~~~p----~~~vP~L~~~~~~l~eS~aI 96 (209)
+++||... .+|+|.+++-+|+.++|+ |+.++++.... .+++.+ ... ..++|.+..+|..|.+...+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~--~~e~DVs~~~~~~~EL~~-~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVK--FDERDVSMDSGFREELRE-LLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCc--EEEEECCCCHHHHHHHHH-HhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 36899988 899999999999999996 67777764322 344444 433 37999999999999988888
Q ss_pred HHHHH
Q 028416 97 INYVD 101 (209)
Q Consensus 97 ~~yL~ 101 (209)
.+.-+
T Consensus 78 ~~L~e 82 (147)
T cd03031 78 LRLNE 82 (147)
T ss_pred HHHHH
Confidence 77543
No 133
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.05 E-value=0.0021 Score=45.61 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=41.3
Q ss_pred CcHhHHhHHHHHHHHHhhccCCCCcccCCCChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHhC
Q 028416 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEQ 209 (209)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~yl~G~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r 209 (209)
+..++++..|..||..+. ......|.+|+.||.+|+.|+.+..+. |+.+. |+|..|+++
T Consensus 59 ~~i~~l~~~L~~Le~ll~---~~~~~n~~LS~dDi~lFp~LR~Ltivk----gi~~P---~~V~~Y~~~ 117 (132)
T PF04399_consen 59 ELIAELNADLEELEPLLA---SPNAVNGELSIDDIILFPILRSLTIVK----GIQWP---PKVRAYMDR 117 (132)
T ss_dssp HHHHHHHHHHHHHHHH-S---CTTBTTSS--HHHHHHHHHHHHHCTCT----TS------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc---cccccCCCCCHHHHHHHHHHhhhhhcc----CCcCC---HHHHHHHHH
Confidence 457889999999999997 344444459999999999999886542 55454 899999874
No 134
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.016 Score=39.42 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=58.8
Q ss_pred CCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhh---hcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 25 FDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKE---KVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~---~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
..+.+.+|.-.+||||+++.-+|...+++ +.++++|-.....++-. ++....++|.+..+|.-+.+...+..+-.
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~--~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVN--PKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCC--CEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 34568999999999999999999999995 78888887654322221 25667799999999999998888887643
No 135
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0012 Score=56.53 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=71.7
Q ss_pred eCCeEeeehHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHhhhcCCcHhHHhHHHHHHHHHhhccCCC
Q 028416 85 HNGKIIGESLDLINYVDSNF-EGPSLLPDDPEKRKFAEELFSYSDTFIKDVSTSFKGDTAKEAGPAFDFLEKALDKFDDG 163 (209)
Q Consensus 85 ~~~~~l~eS~aI~~yL~~~~-~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 163 (209)
.+|..+.++..+..|....- ..+.+++.+ .++.+++.|.++... ..-..+...+..++..|. -+
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~-----------~~~~~~s~~~~~ld~~l~---~~ 107 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST-----------FSFDEISSSLSELDKFLV---LR 107 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh-----------cchHHHHHHHHHHHhhhh---HH
Confidence 34566666666666655322 223588876 789999999998665 123457788889999998 68
Q ss_pred CcccCC-CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhHh
Q 028416 164 PFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIE 208 (209)
Q Consensus 164 ~yl~G~-~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~ 208 (209)
.||+|+ +|+||+++|+++..-..... .......+-+|.+|++
T Consensus 108 t~lvg~sls~Ad~aiw~~l~~n~~~~~---~lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 108 TFLVGNSLSIADFAIWGALHSNGMRQE---QLKAKKDYQNVERWYD 150 (712)
T ss_pred HHhhccchhHHHHHHHHHHhcccchHH---HHHhhCCchhhhhhcC
Confidence 899999 99999999999965211100 1111245667777764
No 136
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.77 E-value=0.015 Score=37.64 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=45.2
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCC
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNG 87 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~ 87 (209)
+++||+-++|+.|..+.-+|+.......+++..+|..+.++++.. .. ..||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~-Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEK-YG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHH-SC--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH-hc--CCCCEEEEcC
Confidence 479999999999999999999877665678888888877777655 44 4899999665
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.69 E-value=0.008 Score=37.04 Aligned_cols=62 Identities=21% Similarity=0.347 Sum_probs=40.7
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEee
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIG 91 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~-~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~ 91 (209)
++++|+.++||+|.++.-+|+.....+ .+++..++..+.++ +.+ ......+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~-l~~-~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD-LAD-EYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh-HHH-HcCCcccCEEEECCEEEE
Confidence 478999999999999988888652211 14445555444333 333 444567999997776554
No 138
>PTZ00062 glutaredoxin; Provisional
Probab=96.60 E-value=0.016 Score=44.36 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=54.0
Q ss_pred CCceEEEee-----CCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHH
Q 028416 26 DGTTRLYMA-----YTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (209)
Q Consensus 26 ~~~~~Ly~~-----~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~y 99 (209)
...+.||.- +.||||.++.-+|...|++ |..++++-.. ..+.+.+ .+...++|.+..+|..+.+...+.+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~--y~~~DI~~d~~~~~~l~~-~sg~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVK--YETYNIFEDPDLREELKV-YSNWPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCC--EEEEEcCCCHHHHHHHHH-HhCCCCCCeEEECCEEEcChHHHHHH
Confidence 356888865 5899999999999999996 6666665322 1344555 67778999999999998887776664
Q ss_pred H
Q 028416 100 V 100 (209)
Q Consensus 100 L 100 (209)
.
T Consensus 189 ~ 189 (204)
T PTZ00062 189 Y 189 (204)
T ss_pred H
Confidence 3
No 139
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.016 Score=36.45 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=46.2
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC-----------CChhhhhh-hcCCCCCCCeEe-eCCeEee
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ-----------DKPAWYKE-KVYPSNKVPSLE-HNGKIIG 91 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~-----------~~~~~~~~-~~~p~~~vP~L~-~~~~~l~ 91 (209)
++++||+...||-|-...-.|+-.++. |+.+++... +..++|.+ +.|.+-.+|+|. +||+++.
T Consensus 2 skp~lfgsn~Cpdca~a~eyl~rl~v~--yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 2 SKPKLFGSNLCPDCAPAVEYLERLNVD--YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCceeeccccCcchHHHHHHHHHcCCC--ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 567999999999999999999999995 666665431 22333433 456777899998 7777665
No 140
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.93 E-value=0.014 Score=41.49 Aligned_cols=33 Identities=6% Similarity=0.051 Sum_probs=29.0
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
|+++|+.+.|++|.+++-.|..+||+ |+.+++.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~--~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIP--FTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCC--cEEeecc
Confidence 48999999999999999999999996 6676654
No 141
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.83 E-value=0.014 Score=40.19 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=28.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccC
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDL 63 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~ 63 (209)
++||+.+.||+|.+++-.|+.+|++ |+.+++.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVD--YTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCc--eEEecccC
Confidence 5899999999999999999999996 67776653
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.77 E-value=0.02 Score=39.70 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=29.2
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
|+++|+.+.|++|.+++-.|+.+|++ |+.+++.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~--~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIP--FEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCc--eEEEecC
Confidence 47899999999999999999999995 7777764
No 143
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.60 E-value=0.021 Score=38.83 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=28.3
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
+++|+.+.||+|.+++-.|+.+|++ |+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIE--YEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCC--cEEEeec
Confidence 5899999999999999999999996 6777664
No 144
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.29 E-value=0.035 Score=39.42 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=28.9
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
|+++|+.+.|+.|.++.-.|+.+|++ |+.+++.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~--~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQID--YTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCC--eEEEEee
Confidence 48999999999999999999999996 6666654
No 145
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=95.18 E-value=0.039 Score=39.26 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=29.2
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
|+++|+.+.|+.|++++-.|+.+|++ |+.+++.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~--~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLS--YKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCC--eEEEECC
Confidence 47899999999999999999999996 6777664
No 146
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.77 E-value=0.052 Score=37.66 Aligned_cols=32 Identities=9% Similarity=0.298 Sum_probs=28.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
++||+.+.||+|.+++-.|+.+|++ |+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIE--YQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCc--eEEEecC
Confidence 5799999999999999999999995 6777664
No 147
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.33 E-value=0.079 Score=36.07 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=28.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
+++|+.+.|+.|++++-.|+..|++ |+++++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~--~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVA--YTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCC--eEEEecc
Confidence 5899999999999999999999996 6676654
No 148
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=94.27 E-value=0.1 Score=36.32 Aligned_cols=33 Identities=9% Similarity=0.262 Sum_probs=28.4
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~ 61 (209)
++++||+.+.|.-|.+++-.|+..||+ |+++++
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~--~~~~~y 33 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIE--YTFIDY 33 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCC--cEEEEe
Confidence 368999999999999999999999996 555544
No 149
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.09 E-value=0.16 Score=32.30 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=39.1
Q ss_pred ceEEEeeCCCchHHHHHHHHHh----cCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCe
Q 028416 28 TTRLYMAYTCPFAQRVWITRNY----KGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGK 88 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~----~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~ 88 (209)
++++|+.++||+|..+.-.++. .+. .+.+..+|....++.. + ......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~-~-~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKA-M-EYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHH-H-HcCCccCCEEEECCE
Confidence 4789999999999987777653 333 2566677765554433 2 445667999996664
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=93.99 E-value=0.1 Score=36.02 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=28.2
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
++||+.+.|+.|.+++-.|+.+|++ |+++++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~--~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHE--VEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC--cEEeehh
Confidence 7899999999999999999999996 6666553
No 151
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=93.62 E-value=0.67 Score=29.32 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=37.7
Q ss_pred ceEEEeeCCCchHHHH----HHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEee
Q 028416 28 TTRLYMAYTCPFAQRV----WITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIG 91 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v----~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~ 91 (209)
++.+|+ ++||.|..+ .-++++.|+. ++++.++ + .+... .-....+|++..+|..+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~--~~~~~v~--~-~~~a~--~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGID--AEFEKVT--D-MNEIL--EAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCC--eEEEEeC--C-HHHHH--HcCCCcCCEEEECCEEEE
Confidence 366777 999999987 6677778874 6777766 2 22221 234678999997775543
No 152
>PRK10853 putative reductase; Provisional
Probab=93.47 E-value=0.13 Score=35.74 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=28.5
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
|+++|+++.|.-|++++-.|+..|++ |+++++-
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~--~~~~d~~ 33 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGID--YRFHDYR 33 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCC--cEEeehc
Confidence 48999999999999999999999996 6666543
No 153
>PRK10026 arsenate reductase; Provisional
Probab=93.35 E-value=0.17 Score=36.36 Aligned_cols=33 Identities=9% Similarity=0.249 Sum_probs=28.7
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~ 61 (209)
.++++|+++.|.-|++++-.|+.+|++ |+++++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~--~~~~d~ 34 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTE--PTIIHY 34 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCC--cEEEee
Confidence 468999999999999999999999996 566554
No 154
>PHA02125 thioredoxin-like protein
Probab=92.50 E-value=0.62 Score=29.33 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=36.2
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEee
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEH 85 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 85 (209)
|+++|+.++|+.|.++.-.|+. +. +.+..++.....+ +.. ...-..+|++..
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~--~~~~~vd~~~~~~-l~~-~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VE--YTYVDVDTDEGVE-LTA-KHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--Hh--heEEeeeCCCCHH-HHH-HcCCceeCeEEC
Confidence 4788999999999988877763 43 5566666545443 333 445678999983
No 155
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=92.44 E-value=0.26 Score=34.74 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=28.2
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~ 61 (209)
.++||+++.|.-|++++-.|+.+|++ |+++++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~--~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHD--VEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCC--cEEEec
Confidence 58999999999999999999999996 566654
No 156
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=92.24 E-value=0.49 Score=31.07 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=40.1
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEee
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIG 91 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~-~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~ 91 (209)
-.+.+|..++|++|..+.-+++.....+ .+++..++..+.++... ...-..+|.++.||..+.
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~--~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVE--ERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHH--HcCCccCCEEEECCEEEE
Confidence 3588999999999988777666553221 24555555545444432 344557999996665544
No 157
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=91.99 E-value=0.57 Score=26.96 Aligned_cols=53 Identities=28% Similarity=0.380 Sum_probs=34.1
Q ss_pred eEEEeeCCCchHHHHHHHHHh---cCCCCceeEEeccCCCChhhh--hhhcCCCCCCCeEe
Q 028416 29 TRLYMAYTCPFAQRVWITRNY---KGLQDEIKLVAFDLQDKPAWY--KEKVYPSNKVPSLE 84 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~---~gv~~~~~~~~~~~~~~~~~~--~~~~~p~~~vP~L~ 84 (209)
+++|+..+|++|.++...+.. .+- .+.+..++........ .. ..+...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNK--GVKFEAVDVDEDPALEKELK-RYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCC--CcEEEEEEcCCChHHhhHHH-hCCCccccEEE
Confidence 467888899999999988883 222 2445555544432221 12 56778999998
No 158
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=91.80 E-value=0.74 Score=31.49 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=46.2
Q ss_pred CCchHHHHHHHHHhcC-CCCceeEEeccCCCChhhhhhhc-CCCCCCCeEe-eCCe-------------EeeehHHHHHH
Q 028416 36 TCPFAQRVWITRNYKG-LQDEIKLVAFDLQDKPAWYKEKV-YPSNKVPSLE-HNGK-------------IIGESLDLINY 99 (209)
Q Consensus 36 ~sp~~~~v~~~l~~~g-v~~~~~~~~~~~~~~~~~~~~~~-~p~~~vP~L~-~~~~-------------~l~eS~aI~~y 99 (209)
.||+|..+.-+|...= +.-..+++.|+...-...+.+-+ .....+|+|+ .+|. -|.++..|+.|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 4899988888876542 22235677777755333322201 2245789999 4443 68899999999
Q ss_pred HHhcCC
Q 028416 100 VDSNFE 105 (209)
Q Consensus 100 L~~~~~ 105 (209)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999987
No 159
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=2.4 Score=28.41 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=51.1
Q ss_pred CCceEEEe-----eCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHH
Q 028416 26 DGTTRLYM-----AYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (209)
Q Consensus 26 ~~~~~Ly~-----~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~y 99 (209)
++.+.||. ++.|+||.++--+|..+|+ .+|..++|-..+ -.+.+.+ .+-.-++|=|-.+|.-+.++-.|.+.
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~-~s~WPT~PQLyi~GEfvGG~DIv~Em 91 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGV-VDFAYVDVLQDPEIRQGLKE-YSNWPTFPQLYVNGEFVGGCDIVREM 91 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCC-cceeEEeeccCHHHHhccHh-hcCCCCCceeeECCEEeccHHHHHHH
Confidence 34566775 4679999999999999994 135555443221 1233333 56677999999999999998877776
Q ss_pred HH
Q 028416 100 VD 101 (209)
Q Consensus 100 L~ 101 (209)
..
T Consensus 92 ~q 93 (105)
T COG0278 92 YQ 93 (105)
T ss_pred HH
Confidence 54
No 160
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=90.45 E-value=0.5 Score=32.47 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=27.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~ 61 (209)
+++|+++.|.-|++++-.|+..|++ |+.+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIE--PEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC--eEEEec
Confidence 5899999999999999999999996 566554
No 161
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=90.28 E-value=0.52 Score=32.51 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=27.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
+++|+++.|.-|++++-.|+..|++ |+.+++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIE--PEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC--eEEEecc
Confidence 5899999999999999999999996 6666543
No 162
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=89.61 E-value=2.6 Score=27.88 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=47.5
Q ss_pred eEEEeeCCCc------hHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcC----CCCCCCeEeeCCeEeeehHHHH
Q 028416 29 TRLYMAYTCP------FAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVY----PSNKVPSLEHNGKIIGESLDLI 97 (209)
Q Consensus 29 ~~Ly~~~~sp------~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~----p~~~vP~L~~~~~~l~eS~aI~ 97 (209)
+++|...-++ .|++|..+|.-+||+ |+.++++... ..+++.+ .. +..++|-+..++.-+.+...+.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~--f~eiDI~~d~~~r~em~~-~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIE--FEEVDISMNEENRQWMRE-NVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCc--eEEEecCCCHHHHHHHHH-hcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 5677765433 356789999999995 7788777543 3456655 43 3478998888888888776655
Q ss_pred HH
Q 028416 98 NY 99 (209)
Q Consensus 98 ~y 99 (209)
..
T Consensus 79 ~l 80 (92)
T cd03030 79 EA 80 (92)
T ss_pred HH
Confidence 53
No 163
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=86.88 E-value=1.4 Score=32.66 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=30.7
Q ss_pred HHhHHHHHHHHHhhccCCC---CcccCC--CChhHHHHHhHHHHH
Q 028416 145 EAGPAFDFLEKALDKFDDG---PFFLGQ--FSLVDIAYIPFVDGY 184 (209)
Q Consensus 145 ~~~~~l~~le~~L~~~~~~---~yl~G~--~t~AD~~l~~~l~~~ 184 (209)
...+++..|++.|+ +. .|++|+ +|..||.+++.|.-+
T Consensus 112 ~a~~~l~~L~~~L~---~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLG---EWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHh---hccccccccCCCCCCHHHHHHHHHHHHH
Confidence 35778889999998 55 888885 999999999988654
No 164
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=85.32 E-value=3.7 Score=25.79 Aligned_cols=57 Identities=21% Similarity=0.424 Sum_probs=34.6
Q ss_pred ceEEEeeCCCchHHHHHH----HHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeee
Q 028416 28 TTRLYMAYTCPFAQRVWI----TRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGE 92 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~----~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~e 92 (209)
+++++ .+.||+|.++.- ++...|+ +++++++ ...+.+ . ......+|+|+.||...+.
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i--~~ei~~~---~~~~~~-~-~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGI--EVEIIDI---EDFEEI-E-KYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTE--EEEEEET---TTHHHH-H-HTT-SSSSEEEETTEEEEE
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCC--eEEEEEc---cCHHHH-H-HcCCCCCCEEEECCEEEEE
Confidence 35664 466999986544 5555565 3555553 334444 2 4567789999977776443
No 165
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=82.50 E-value=8.1 Score=25.07 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=43.9
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCC--ceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEe------eehHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQD--EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII------GESLDLI 97 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~--~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l------~eS~aI~ 97 (209)
.+..|+.++|+.|....=.+....-.+ .+.+..+|....++.. . .-....+|.+. .+|... .+...|.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~-~-~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELC-K-KYGVKSVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHH-H-HTTCSSSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccchhh-h-ccCCCCCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 466777799999987664432221111 2667777776554433 3 34467899997 566543 2455676
Q ss_pred HHHHh
Q 028416 98 NYVDS 102 (209)
Q Consensus 98 ~yL~~ 102 (209)
.+|.+
T Consensus 98 ~~i~~ 102 (103)
T PF00085_consen 98 EFIEK 102 (103)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
No 166
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=78.22 E-value=6.8 Score=27.22 Aligned_cols=21 Identities=24% Similarity=0.244 Sum_probs=14.8
Q ss_pred eEEEeeCCCchHHHHHHHHHh
Q 028416 29 TRLYMAYTCPFAQRVWITRNY 49 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~ 49 (209)
+.-|+.++||+|+.+.=.|+.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~ 47 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSG 47 (122)
T ss_pred EEEEECCCChhHHHHhHHHHH
Confidence 556777999999985544433
No 167
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=75.69 E-value=11 Score=24.62 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=36.6
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEe
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~g--v~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l 90 (209)
.+..|+.++|+.|....-.++... ....+.+..+|....++.. . ......+|++. .+|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~-~-~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIA-E-AAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHH-H-HCCCeeccEEEEEECCeEE
Confidence 466777799999987766654411 1112566677765554433 2 33346889887 566544
No 168
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=71.06 E-value=6.5 Score=26.69 Aligned_cols=29 Identities=10% Similarity=0.328 Sum_probs=21.5
Q ss_pred EeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 028416 32 YMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (209)
Q Consensus 32 y~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~ 62 (209)
|+.+.|.-|++++-.|+..|++ |+++++.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~--~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIE--YEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT----EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCC--eEeehhh
Confidence 7889999999999999999995 6776553
No 169
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=69.99 E-value=22 Score=24.21 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=38.5
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEee
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIG 91 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~g--v~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l~ 91 (209)
.+..|+.++|+.|..+.-.++... .+ ...+..+|....++ +.+ ......+|++. .+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~-l~~-~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPF-LVE-KLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHH-HHH-HCCCccCCEEEEEECCEEEE
Confidence 355666689999987776664422 22 24667777655443 333 44567899998 5777655
No 170
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=69.54 E-value=24 Score=27.00 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=35.1
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~-~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
.+++|+.++||+|..+.-+++...-.+ ...+..+|....++.. . ......+|+++
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~-~-~~~V~~vPtl~ 191 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLA-E-KYGVMSVPKIV 191 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHH-H-HhCCccCCEEE
Confidence 477788999999998777766533211 2445556655544433 2 34456799998
No 171
>PRK09381 trxA thioredoxin; Provisional
Probab=69.42 E-value=30 Score=22.91 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=34.2
Q ss_pred ceEEEeeCCCchHHHHHHHH-----HhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEe
Q 028416 28 TTRLYMAYTCPFAQRVWITR-----NYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l-----~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l 90 (209)
.+..|+.++||.|....-.+ .+.+ .+.+..++....+... . .-....+|+++ .+|..+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~~~~~-~-~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTA-P-KYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCChhHH-H-hCCCCcCCEEEEEeCCeEE
Confidence 35566668999998765333 2322 2556666665544433 2 33457899887 566543
No 172
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=66.39 E-value=5.4 Score=27.79 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEeeehHHHHHHHHhcCC
Q 028416 41 QRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGESLDLINYVDSNFE 105 (209)
Q Consensus 41 ~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l~eS~aI~~yL~~~~~ 105 (209)
.|+.+++++..- ++++. +|.-..-|-|. -+|..++|++||++||..-|-
T Consensus 13 LKlalA~~~~~~--~lk~~--------------v~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 13 LKLALALEYAQK--DLKLE--------------VNEDESGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp HHHHHHHHH--S--TT--E--------------E-SS--S--EEE-S--S----HHHHHHHHTT--T
T ss_pred HHHHHHHHHhCC--CCeee--------------eCCccccceeeecCCceEEecccHHHHHHHhhcC
Confidence 467777777653 23221 23333347775 478899999999999998655
No 173
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=66.30 E-value=37 Score=22.78 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=38.8
Q ss_pred eEEEeeCCCch------HHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcC---------CCCCCCeEeeCCeEeee
Q 028416 29 TRLYMAYTCPF------AQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVY---------PSNKVPSLEHNGKIIGE 92 (209)
Q Consensus 29 ~~Ly~~~~sp~------~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~---------p~~~vP~L~~~~~~l~e 92 (209)
+++|....++. .+++..+|+.++|+ |+.+++.... ...++++ .. +....|-+..|+..+.+
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~--fe~vDIa~~e~~r~~mr~-~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIP--FEEVDIAMDEEARQWMRE-NAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT----EEEEETTT-HHHHHHHHH-HT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCC--cEEEeCcCCHHHHHHHHH-hccccccCCCCCCCCCCEEEeCCEEEee
Confidence 67777665543 35799999999996 7787776633 2455654 43 22334567777776666
Q ss_pred hHHHHHH
Q 028416 93 SLDLINY 99 (209)
Q Consensus 93 S~aI~~y 99 (209)
--.+-+.
T Consensus 80 ye~f~ea 86 (99)
T PF04908_consen 80 YEDFEEA 86 (99)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 174
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=66.07 E-value=46 Score=23.80 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=47.0
Q ss_pred CCCCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCC----CCCeEeeCCeEeeehHHHHH
Q 028416 23 PLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSN----KVPSLEHNGKIIGESLDLIN 98 (209)
Q Consensus 23 ~~~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~----~vP~L~~~~~~l~eS~aI~~ 98 (209)
.+.+.++++++--.|++|...--.|..+.-.-.+.+..+..+.+-.-+. ..+.. ..=.++.+|..+.+|.|+++
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~--~~~l~~~~~~s~~~~~~g~~~~~sdA~~~ 81 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLE--AAGLDPEDVDSVLLVEAGQLLVGSDAAIR 81 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHh--hcCCChhhhheeeEecCCceEeccHHHHH
Confidence 4666777888778899998744444444332235555555444433221 22221 12223468999999999999
Q ss_pred HHHhc
Q 028416 99 YVDSN 103 (209)
Q Consensus 99 yL~~~ 103 (209)
-+-..
T Consensus 82 i~~~L 86 (137)
T COG3011 82 ILRLL 86 (137)
T ss_pred HHHHC
Confidence 87654
No 175
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=64.82 E-value=34 Score=21.90 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=36.3
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCC--CceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeE
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQ--DEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKI 89 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~--~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 89 (209)
.+..|+.++|+.|++..-.|+...-. -.+.+..++....++...+ .+ ...+|++. .+|..
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~-~~-i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEK-FE-ITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHh-cC-CccccEEEEEECCEE
Confidence 35667778999999876666542211 1356667776555544333 44 45689887 56654
No 176
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.40 E-value=27 Score=28.44 Aligned_cols=73 Identities=16% Similarity=0.329 Sum_probs=50.1
Q ss_pred ceEEEeeCCCchHHHH-----HHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEeee------hH
Q 028416 28 TTRLYMAYTCPFAQRV-----WITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGE------SL 94 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v-----~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l~e------S~ 94 (209)
.+.+|+.++|+-|... .++-+++|- |.+..++....+. +.. ......||+++ .+|+++.+ -.
T Consensus 46 VlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p~-vAa-qfgiqsIPtV~af~dGqpVdgF~G~qPes 120 (304)
T COG3118 46 VLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEPM-VAA-QFGVQSIPTVYAFKDGQPVDGFQGAQPES 120 (304)
T ss_pred eEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcchh-HHH-HhCcCcCCeEEEeeCCcCccccCCCCcHH
Confidence 4667788899999754 455567775 7787777755443 333 55677899987 57766554 34
Q ss_pred HHHHHHHhcCC
Q 028416 95 DLINYVDSNFE 105 (209)
Q Consensus 95 aI~~yL~~~~~ 105 (209)
.|-++|++.-+
T Consensus 121 qlr~~ld~~~~ 131 (304)
T COG3118 121 QLRQFLDKVLP 131 (304)
T ss_pred HHHHHHHHhcC
Confidence 78888887655
No 177
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=62.71 E-value=31 Score=23.38 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=32.8
Q ss_pred eEEE-eeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 29 TRLY-MAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 29 ~~Ly-~~~~sp~~~~v~~~l~~~gv~~-~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
++++ +.++||+|..++-+++...-.+ ..++..++....+ .+.. .-....+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-~l~~-~~~v~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-EKAE-KYGVERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-HHHH-HcCCCcCCEEE
Confidence 4455 4579999998777776443211 2455556654443 3433 44567899998
No 178
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=58.01 E-value=27 Score=31.08 Aligned_cols=58 Identities=14% Similarity=0.315 Sum_probs=35.7
Q ss_pred ceEEEeeCCCchHHHHHH----HHHhc-CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEee
Q 028416 28 TTRLYMAYTCPFAQRVWI----TRNYK-GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIG 91 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~----~l~~~-gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~ 91 (209)
.+++|..+.||||-++.- +..+. +| ..+. ++..+-++... .-....+|.++.||.++.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i--~~~~--i~~~~~~~~~~--~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNV--EAEM--IDVSHFPDLKD--EYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCc--eEEE--EECcccHHHHH--hCCceecCEEEECCEEEE
Confidence 588999999999976444 33443 45 2444 44444444432 334667999997775543
No 179
>PTZ00051 thioredoxin; Provisional
Probab=55.35 E-value=42 Score=21.55 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=33.4
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeE
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKI 89 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~-~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 89 (209)
.+..|+.++|+.|+...-.++...-.+ ++.+..++..... .+.+ ......+|+++ .+|..
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-~~~~-~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS-EVAE-KENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH-HHHH-HCCCceeeEEEEEeCCeE
Confidence 356777789999987655544321111 2445555554332 3333 34456789887 45543
No 180
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.80 E-value=46 Score=25.92 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=49.9
Q ss_pred ceEEEe-----eCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 28 TTRLYM-----AYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 28 ~~~Ly~-----~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
.++||. .+.|+++.++--+|+..|++ |...++-..+ -.+.++. .+-.-+.|=|-.+|.-+.+..-|.+.++
T Consensus 140 ~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~--~~~fdIL~DeelRqglK~-fSdWPTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGFSRQLVGILQSHNVN--YTIFDVLTDEELRQGLKE-FSDWPTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred eEEEEecCCCCcccccccHHHHHHHHHcCCC--eeEEeccCCHHHHHHhhh-hcCCCCccceeECCEeccCcHHHHHHhh
Confidence 466775 46699999999999999996 5665554322 1333333 6667789998888888887666665544
No 181
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=53.69 E-value=68 Score=21.81 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=13.8
Q ss_pred CceEEEeeCCCchHHHHH
Q 028416 27 GTTRLYMAYTCPFAQRVW 44 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~ 44 (209)
..+..|+.++|++|.+..
T Consensus 16 ~vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLK 33 (125)
T ss_pred cEEEEEeCCCCHHHHHHH
Confidence 346677779999998764
No 182
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=53.57 E-value=49 Score=22.22 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=35.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEeee
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGE 92 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~-~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l~e 92 (209)
+..|+.++|+.|..+.-.++...-.| ...+..++.... .+.+ ......+|++. .+|..+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~-~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVN-YLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHH-hcCCCcCCEEEEEECCEEEEE
Confidence 55677789999987655544322111 134555665433 3433 34456899997 57766544
No 183
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=53.46 E-value=58 Score=21.29 Aligned_cols=54 Identities=9% Similarity=-0.071 Sum_probs=30.9
Q ss_pred ceEEEeeCCCchHHHHHHHH-------HhcCCCCceeEEeccCCCC---hhhhhhhcCCCCCCCeEe
Q 028416 28 TTRLYMAYTCPFAQRVWITR-------NYKGLQDEIKLVAFDLQDK---PAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l-------~~~gv~~~~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~ 84 (209)
.+..|+.++|++|.+..-.+ +..+- .+.+..++.... ...+.+ ......+|++.
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~-~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLK-RFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHH-HcCCCCCCEEE
Confidence 35677779999998765332 11121 255666665432 233443 34456799886
No 184
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=51.82 E-value=9.2 Score=29.75 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhhccCCCCcccCC-CChhHHHHHhHH
Q 028416 147 GPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFV 181 (209)
Q Consensus 147 ~~~l~~le~~L~~~~~~~yl~G~-~t~AD~~l~~~l 181 (209)
...+..++..|. ++.|..|. ++-+|+.+|..+
T Consensus 10 ~~glk~l~~sLA---~ks~~~g~~~s~edv~vf~al 42 (231)
T KOG1668|consen 10 PAGLKKLNKSLA---EKSYIEGYQLSKEDVVVFAAL 42 (231)
T ss_pred hhhhhhhhHhhh---cccCCCCCCcccccceeehhc
Confidence 567888999998 89999999 999999999877
No 185
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=51.22 E-value=20 Score=24.43 Aligned_cols=26 Identities=12% Similarity=0.363 Sum_probs=21.8
Q ss_pred CCeEe-eCCeEeeehHHHHHHHHhcCC
Q 028416 80 VPSLE-HNGKIIGESLDLINYVDSNFE 105 (209)
Q Consensus 80 vP~L~-~~~~~l~eS~aI~~yL~~~~~ 105 (209)
+|.+. .+|.++++|..|+++.+.++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46666 799999999999999888765
No 186
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=51.01 E-value=47 Score=21.12 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=33.0
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCe
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~g--v~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 88 (209)
.+..|+.++|+.|....-.++... .+-.+.+..++........ . .-....+|++. .+|.
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~-~-~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIA-A-KYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHH-H-HcCCCcCCEEEEEeCCc
Confidence 355666688999987654443321 1112566667765544333 2 33445789887 4554
No 187
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=50.76 E-value=56 Score=19.98 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=34.1
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCC-CCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCe
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGL-QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv-~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 88 (209)
.+..|+.++|++|....-.+...-. .-.+.+..++....+... . ......+|+++ .+|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELA-E-EYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHH-H-hcCcccccEEEEEECCE
Confidence 3667777899999887766665111 012445555554433322 2 33456789987 4555
No 188
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=50.20 E-value=34 Score=30.08 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=45.1
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCC-CceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeee----hHHHHHHHH
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQ-DEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGE----SLDLINYVD 101 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~-~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~e----S~aI~~yL~ 101 (209)
-.+++|..+.||||-.+.-+++...+. -..+...++...-++... .-....||.+..++..+.+ -..+++.+.
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~--~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~ 195 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVE--ARNIMAVPTVFLNGEEFGQGRMTLEEILAKLD 195 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHH--hcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 458999999999998766555444331 023444455444454432 3345689999976655443 335556665
Q ss_pred hc
Q 028416 102 SN 103 (209)
Q Consensus 102 ~~ 103 (209)
+.
T Consensus 196 ~~ 197 (517)
T PRK15317 196 TG 197 (517)
T ss_pred cc
Confidence 43
No 189
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=49.85 E-value=34 Score=30.04 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=44.4
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeee----hHHHHHHHH
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGE----SLDLINYVD 101 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~-~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~e----S~aI~~yL~ 101 (209)
-.+++|..+.||||-.+.-++....+.. ..+...+|....++... .-....||.+..++..+.+ -..+++.+.
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~--~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVE--ALGIQGVPAVFLNGEEFHNGRMDLAELLEKLE 196 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHH--hcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 4588999999999987666665544321 23444455444455443 3345589999976655444 234445554
Q ss_pred h
Q 028416 102 S 102 (209)
Q Consensus 102 ~ 102 (209)
+
T Consensus 197 ~ 197 (515)
T TIGR03140 197 E 197 (515)
T ss_pred h
Confidence 3
No 190
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=49.49 E-value=67 Score=20.49 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=33.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCC--ceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeE
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQD--EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKI 89 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~--~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 89 (209)
+..|+.++|+.|....-.++...-.+ .+.+..++.....+ +.+ .-....+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~-~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQ-QFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHH-HcCCCCCCEEEEEeCCEE
Confidence 55566689999987655554322111 25566666654433 333 33456789998 56654
No 191
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.13 E-value=65 Score=22.54 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=41.4
Q ss_pred CCCchHHH----HHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCC-------CCCCeEe--e-CCeEeeehHHHHHHH
Q 028416 35 YTCPFAQR----VWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPS-------NKVPSLE--H-NGKIIGESLDLINYV 100 (209)
Q Consensus 35 ~~sp~~~~----v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~-------~~vP~L~--~-~~~~l~eS~aI~~yL 100 (209)
.|||.|.+ +.-+|++... +..++.++..+.+.|--. -||. --||+|. . .++.+.+...-..+|
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p-~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~L 119 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDP-ANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHL 119 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCC-CCccccCCCceeecceeeEEcCccccchHhHhhHHHH
Confidence 36999976 5566776666 477777777666555322 3333 2578887 3 345677777777776
Q ss_pred Hh
Q 028416 101 DS 102 (209)
Q Consensus 101 ~~ 102 (209)
.+
T Consensus 120 ve 121 (128)
T KOG3425|consen 120 VE 121 (128)
T ss_pred HH
Confidence 54
No 192
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=48.01 E-value=88 Score=22.69 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=34.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCC---ceeEEeccCCCChhhhhhhcCC-----CCCCCeEe--eCCeEee
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQD---EIKLVAFDLQDKPAWYKEKVYP-----SNKVPSLE--HNGKIIG 91 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~---~~~~~~~~~~~~~~~~~~~~~p-----~~~vP~L~--~~~~~l~ 91 (209)
+..|+.++|+.|....-.++...-.+ .+.+..++....++ +.++.+- .+.+|++. .+|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 55677789999987554443222111 25667777655433 2221221 23489987 6776655
No 193
>PRK10996 thioredoxin 2; Provisional
Probab=47.24 E-value=87 Score=22.06 Aligned_cols=60 Identities=10% Similarity=0.178 Sum_probs=35.3
Q ss_pred eEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEe
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~g--v~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l 90 (209)
+..|+.++|+.|....-.+...- ....+.+..++....++.. + ......+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~-~-~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELS-A-RFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHH-H-hcCCCccCEEEEEECCEEE
Confidence 55666689999987543333311 1113566677775555433 3 34457899987 566644
No 194
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=45.18 E-value=57 Score=22.29 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=31.7
Q ss_pred ceEEEeeCCCchHHHHHHHHHhc-C---CCCceeEEeccCCCChhhhhhhcCCCC-CCCeEe--e-CCeEeee
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYK-G---LQDEIKLVAFDLQDKPAWYKEKVYPSN-KVPSLE--H-NGKIIGE 92 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~-g---v~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~L~--~-~~~~l~e 92 (209)
.+.-|+..+|+.|.+..-.+... . ..-.|..+.++....+ .... .+..+ .+|+++ + +|..+..
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~-~~~~-~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP-KDEE-FSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc-hhhh-cccCCCccceEEEECCCCCCchh
Confidence 35566678999998764444331 1 1112444444432221 1112 44443 499987 3 5655443
No 195
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=45.03 E-value=65 Score=21.60 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=32.2
Q ss_pred ceEEEeeCCCchHHHHHHHH-----HhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeE
Q 028416 28 TTRLYMAYTCPFAQRVWITR-----NYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKI 89 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l-----~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 89 (209)
.+..|+.++|+.|....-.+ ++.+. .+.+..++....+. +.. ...-..+|++. .+|..
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~~-l~~-~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHERR-LAR-KLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccHH-HHH-HcCCccCCEEEEEECCEE
Confidence 35567778999997644332 22222 24455555543332 333 34567899887 56654
No 196
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=44.61 E-value=89 Score=20.47 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=30.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCC---ceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeE
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQD---EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKI 89 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 89 (209)
+..|+.++|+.|....-.++...-.+ ...+..++.. .++. .+ ...-..+|++. .+|..
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~-~~-~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDT-LK-RYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHH-HH-HcCCCcCcEEEEEECCEE
Confidence 55666689999987544443211111 1344555544 2332 22 33456789876 56654
No 197
>PF13728 TraF: F plasmid transfer operon protein
Probab=42.94 E-value=57 Score=25.16 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=29.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC----------hhhhhhhcCCCCCCCeEe
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK----------PAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~----------~~~~~~~~~p~~~vP~L~ 84 (209)
+.+|+-..||+|+.-.-+|....-.|.+++..|+.... .....++++ ...+|+|.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEE
Confidence 55666688999987444444433333445555555321 122222133 35889886
No 198
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=41.97 E-value=70 Score=21.25 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=31.4
Q ss_pred CceEEEeeCCCchHHHHHHHHH-----hcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 27 GTTRLYMAYTCPFAQRVWITRN-----YKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~-----~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
..+..|+.++|+.|.+..-.+. +.+. .+.+..++.......+..+......+|++.
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccchhhHHhhcCCCcCCEEE
Confidence 3577788899999987543332 2222 255555665442222221134567789886
No 199
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=41.60 E-value=1.5e+02 Score=23.09 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=42.3
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEe------eehHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII------GESLDLI 97 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~g--v~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l------~eS~aI~ 97 (209)
.+..|+.++|+.|....=.++... .+-.+.+..+|....+ .+.+ ...-..+|++. ++|..+ .....|.
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-~l~~-~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-NLAK-RFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-HHHH-HcCCCcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 466777799999986543332211 1102455556654433 3333 33456789887 566543 2345666
Q ss_pred HHHHhcCC
Q 028416 98 NYVDSNFE 105 (209)
Q Consensus 98 ~yL~~~~~ 105 (209)
+++.+.+.
T Consensus 133 ~fi~~~~~ 140 (224)
T PTZ00443 133 AFALGDFK 140 (224)
T ss_pred HHHHHHHH
Confidence 77766653
No 200
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=40.95 E-value=1.2e+02 Score=22.44 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=34.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEeee
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGE 92 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~g--v~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l~e 92 (209)
+..|+.++|+-|..+.-.|+..- -+ ...++.++.... .+.. ..+...+|++. .+|..+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~--~l~~-~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT--GASD-EFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch--hhHH-hCCCCCCCEEEEEECCEEEEE
Confidence 44455588999975543332111 12 255666665432 3333 45667899997 57776554
No 201
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=38.02 E-value=29 Score=24.16 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=28.7
Q ss_pred CCCchHHHHH----HHHHhcCCCCceeEEeccCCCChhhhhh----hcCC---CCCCCeEe--eCCeEeeehHH
Q 028416 35 YTCPFAQRVW----ITRNYKGLQDEIKLVAFDLQDKPAWYKE----KVYP---SNKVPSLE--HNGKIIGESLD 95 (209)
Q Consensus 35 ~~sp~~~~v~----~~l~~~gv~~~~~~~~~~~~~~~~~~~~----~~~p---~~~vP~L~--~~~~~l~eS~a 95 (209)
.|||.|.++. -++....- +..++.+...+.+.|-.. ..+| ...||+|. .++..+.|...
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 4699998754 44554322 456666666554444211 1222 35799998 45566766543
No 202
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=37.62 E-value=1.4e+02 Score=20.60 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=34.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCC--ceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEe
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQD--EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~--~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l 90 (209)
+.-|+..||+-|..+.=.++..--.| ...+..+|....++ +.+ ......+|++. .+|..+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~-~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNK-MYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHH-HcCCCCCCEEEEEECCEEE
Confidence 44466789999987655443322211 14566677655443 333 34456799997 566544
No 203
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=36.37 E-value=1.1e+02 Score=21.25 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=28.5
Q ss_pred CCCchHHHHHH----HHHhcCCCCceeEEeccCCCC------hhhhhhhcCCCC-CCCeEe--eCCeEeeeh
Q 028416 35 YTCPFAQRVWI----TRNYKGLQDEIKLVAFDLQDK------PAWYKEKVYPSN-KVPSLE--HNGKIIGES 93 (209)
Q Consensus 35 ~~sp~~~~v~~----~l~~~gv~~~~~~~~~~~~~~------~~~~~~~~~p~~-~vP~L~--~~~~~l~eS 93 (209)
.|||.|..+.- +.....- ...++.++..+. ...++. .-... .+|++. .++..+.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~-~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRT-DPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHh-ccCcccCCCEEEEEcCCceecch
Confidence 68999986543 3333331 245566665432 223322 11123 799997 455555543
No 204
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=35.75 E-value=1.1e+02 Score=21.61 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=30.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCC--ceeEEeccCCCC-hhhhhhhcCCCCCCCeEe--e-CCeEe
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQD--EIKLVAFDLQDK-PAWYKEKVYPSNKVPSLE--H-NGKII 90 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~--~~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~--~-~~~~l 90 (209)
+..|+..||+.|.+..=.+....-.| .+.++.++.... ...+.. ......+|+++ + +|.++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~-~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEID-RYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHH-HcCCCCCCEEEEECCCCCEE
Confidence 44555688999986544443211100 234554544332 122222 33456789887 3 56543
No 205
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.65 E-value=93 Score=24.12 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=44.4
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEe----eehHHHHHHHH
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKII----GESLDLINYVD 101 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l----~eS~aI~~yL~ 101 (209)
.++++|.|..|-.|....=.|+.+|+--..+++. ...+....- .|..-.+|.+..||..+ .|.-.|-.-+.
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~---a~~p~f~~~-~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIID---AELPPFLAF-EKGVISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEE---cCCChHHHh-hcceeecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 3588999999999999999999999832333332 222332222 34556789888555432 34555555544
No 206
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=35.19 E-value=1.1e+02 Score=22.83 Aligned_cols=23 Identities=9% Similarity=0.288 Sum_probs=18.3
Q ss_pred CceEEEeeCCCchHHHHHHHHHh
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNY 49 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~ 49 (209)
..+.+|.-+.||||++..-.+..
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhh
Confidence 44667777899999998887774
No 207
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=33.69 E-value=37 Score=20.51 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=17.0
Q ss_pred ceEEEee----CCCchHHHHHHHHHh
Q 028416 28 TTRLYMA----YTCPFAQRVWITRNY 49 (209)
Q Consensus 28 ~~~Ly~~----~~sp~~~~v~~~l~~ 49 (209)
+|+||.+ ..|.||+||..+|..
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 4677766 358899999998865
No 208
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=33.59 E-value=1.2e+02 Score=24.33 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=28.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC----------hhhhhhhcCCCCCCCeEe
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK----------PAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~----------~~~~~~~~~p~~~vP~L~ 84 (209)
+..|+..+||+|+...-.|....-.|.++++.++.... .....+ .-....+|++.
T Consensus 170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~-~~gV~~vPtl~ 234 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQ-QLKIRTVPAVF 234 (271)
T ss_pred EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHH-HcCCCcCCeEE
Confidence 44455578999987554444333333345555544321 112222 22346789886
No 209
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=33.57 E-value=1.4e+02 Score=20.37 Aligned_cols=55 Identities=11% Similarity=-0.064 Sum_probs=30.3
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCC--ceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQD--EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~--~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
+..|+.+||+.|....-.++...-.+ ...+..+|.........+ ...-..+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~-~~~I~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRK-QKHFFYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHH-hcCCcccCEEE
Confidence 55677789999987665555443211 144556665433322111 22335688886
No 210
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=33.51 E-value=46 Score=21.99 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=13.2
Q ss_pred ceEEEeeCCCchHHHHHHHHH
Q 028416 28 TTRLYMAYTCPFAQRVWITRN 48 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~ 48 (209)
.+.+|+.++||||.+..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 355666689999998755544
No 211
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=33.21 E-value=1.4e+02 Score=19.31 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=32.8
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCC--ceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCe
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQD--EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~--~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 88 (209)
.+..|+.++|+.|....-.++...-.+ .+.+..++....+. +.+ ......+|++. .+|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~-~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCR-SQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHH-HcCCCccCEEEEEcCCC
Confidence 366677799999986544442222111 24566666654433 333 33456789886 4453
No 212
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=33.19 E-value=1.7e+02 Score=22.25 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=34.0
Q ss_pred eEEEee---CCCchHHHHHHHHHhcCCCC---ceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCe
Q 028416 29 TRLYMA---YTCPFAQRVWITRNYKGLQD---EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (209)
Q Consensus 29 ~~Ly~~---~~sp~~~~v~~~l~~~gv~~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 88 (209)
+.+|.. +|||.|..+.=+++...-.| ++.++.++....+ .+.. ......+|++. .+|.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-~l~~-~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-EEAE-KYGVERVPTTIILEEGK 88 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-HHHH-HcCCCccCEEEEEeCCe
Confidence 667777 89999987776665543221 2334555543333 2333 44567899997 4543
No 213
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=33.08 E-value=1.2e+02 Score=19.66 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=31.1
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCC--ceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQD--EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~--~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
.+..|+.++|+.|.+..=.++...-.+ .+.+..++....++ +.+ ......+|++.
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~-~~~i~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQ-QANIRAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHH-HcCCCcccEEE
Confidence 466777799999986443332221110 25566666655433 333 34556789887
No 214
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=32.71 E-value=98 Score=20.32 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=28.6
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~gv~~-~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
.+..|+.++|+.|....=.++...-.| .+.+..++..+....+.. .-....+|++.
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~-~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLS-RYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHH-hcCCeecCEEE
Confidence 355666688999987654443221100 133445555422223333 33346789886
No 215
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=30.15 E-value=1.1e+02 Score=23.88 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=18.0
Q ss_pred CceEEEeeCCCchHHHHHHHHHhc
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYK 50 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~ 50 (209)
.++++|.-+.||||+|.+--+...
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHH
Confidence 346777778999999987666553
No 216
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=30.09 E-value=1.1e+02 Score=19.35 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=31.0
Q ss_pred CceEEEeeCCCchHHHHHHHH-----HhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 27 GTTRLYMAYTCPFAQRVWITR-----NYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l-----~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
..+.+|+.++|+.|+...-.+ .+.+-+ .+.+..++....+ .+.+ ......+|.+.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~-~~~~-~~~i~~~P~~~ 74 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAEK-DLAS-RFGVSGFPTIK 74 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccchH-HHHH-hCCCCcCCEEE
Confidence 347788889999998743333 222211 2455555554333 3333 33456799885
No 217
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=29.55 E-value=1.4e+02 Score=18.97 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=32.0
Q ss_pred ceEEEeeCCCchHHHHHH-----HHHhcC-CCCceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCe
Q 028416 28 TTRLYMAYTCPFAQRVWI-----TRNYKG-LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~-----~l~~~g-v~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 88 (209)
.+..|+.++|+.|+...= +-++.+ -+ .+.+..++....... .+ ...-..+|++. .+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~-~~-~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENP-SVKIAKVDCTQHREL-CS-EFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCC-cEEEEEEECCCChhh-Hh-hcCCCcCCEEEEEeCCC
Confidence 466677789999986432 223333 11 256666665443332 22 33356789876 4443
No 218
>PHA02278 thioredoxin-like protein
Probab=29.38 E-value=1.8e+02 Score=19.40 Aligned_cols=61 Identities=8% Similarity=0.108 Sum_probs=31.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCC--CCceeEEeccCCCC---hhhhhhhcCCCCCCCeEe--eCCeEe
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGL--QDEIKLVAFDLQDK---PAWYKEKVYPSNKVPSLE--HNGKII 90 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv--~~~~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~--~~~~~l 90 (209)
+.-|+.++|+.|..+.=.++...- .....+..++.... .+.+.. ..-...+|++. .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~-~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVK-LFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHH-HCCCccccEEEEEECCEEE
Confidence 444555899999866544433211 11123444444322 233333 34456789997 577654
No 219
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=28.36 E-value=1.2e+02 Score=19.43 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=31.1
Q ss_pred ceEEEeeCCCchHHHHHHHHH----hcC-CCCceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 28 TTRLYMAYTCPFAQRVWITRN----YKG-LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~----~~g-v~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
.+..|+.++|+.|+...-.+. ..+ .+ .+.+..++.......+.. .-....+|++.
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~-~~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANED-DVVIAKVDADEANKDLAK-KYGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCC-CEEEEEEECCCcchhhHH-hCCCCCcCEEE
Confidence 467778899999975433332 212 11 356666776551222333 33456789886
No 220
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=28.21 E-value=24 Score=30.08 Aligned_cols=35 Identities=11% Similarity=-0.033 Sum_probs=26.5
Q ss_pred CChhHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHhH
Q 028416 170 FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWI 207 (209)
Q Consensus 170 ~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~ 207 (209)
+|+.|+ |+...|+-+-..+++|+.+ .+||.|.+|+
T Consensus 375 PSIt~I--~P~AnW~EREa~DMFGI~F-eGHPDLRRIL 409 (430)
T PRK07735 375 ESVTPL--WKGANWPEREAYDLLGIVF-KGHPNLSRIL 409 (430)
T ss_pred CChHHh--hccCChHHHHHHHHhCccc-CCCCCCccCC
Confidence 888887 5666666665566778764 8999999886
No 221
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=27.33 E-value=77 Score=25.06 Aligned_cols=22 Identities=14% Similarity=0.602 Sum_probs=16.7
Q ss_pred CceEEEeeCCCchHHHHHHHHH
Q 028416 27 GTTRLYMAYTCPFAQRVWITRN 48 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~ 48 (209)
.++++|.-+.||||++.+--+.
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHH
Confidence 3466777789999999876654
No 222
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=26.84 E-value=2.2e+02 Score=19.74 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=35.9
Q ss_pred eEEEeeCCCchHHHHHH-------HHHhcCCCCceeEEeccCCCChhh---hhh---hcCCCCCCCeEe---eCCeEeee
Q 028416 29 TRLYMAYTCPFAQRVWI-------TRNYKGLQDEIKLVAFDLQDKPAW---YKE---KVYPSNKVPSLE---HNGKIIGE 92 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~-------~l~~~gv~~~~~~~~~~~~~~~~~---~~~---~~~p~~~vP~L~---~~~~~l~e 92 (209)
+..++..+|++|++..- +....+- .|..+.+|....++. +.+ .....+..|+++ .+|..+..
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~ 96 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFG 96 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEee
Confidence 44456688999987632 2222222 377777777554322 110 023456789987 36777776
Q ss_pred h
Q 028416 93 S 93 (209)
Q Consensus 93 S 93 (209)
+
T Consensus 97 ~ 97 (124)
T cd02955 97 G 97 (124)
T ss_pred e
Confidence 6
No 223
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=26.15 E-value=1.2e+02 Score=22.24 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=23.9
Q ss_pred ceEEEeeCCCchHHH----HHHHHHhc-CCCCceeEEeccCCC
Q 028416 28 TTRLYMAYTCPFAQR----VWITRNYK-GLQDEIKLVAFDLQD 65 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~----v~~~l~~~-gv~~~~~~~~~~~~~ 65 (209)
++++|.-..||||.. ++-+++.. ++ +++.+.+.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~--~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV--EIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC--EEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--cEEEecccccc
Confidence 467888899999974 44444555 66 46666666543
No 224
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=25.36 E-value=1.8e+02 Score=18.07 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=32.9
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcC--C--CCceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKG--L--QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~g--v--~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
..+.+|+.++|++|....-.++... + ...+.+..++....+. +.+ .-....+|++.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND-LCS-EYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH-HHH-hCCCCCCCEEE
Confidence 3467777789999987655553321 1 1136666666654333 333 33446789886
No 225
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=25.09 E-value=2e+02 Score=18.74 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=32.5
Q ss_pred ceEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCCh--hhhhhhcCCCCCCCeEe--eCCeEe
Q 028416 28 TTRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKP--AWYKEKVYPSNKVPSLE--HNGKII 90 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~l~~~g--v~~~~~~~~~~~~~~~--~~~~~~~~p~~~vP~L~--~~~~~l 90 (209)
.+..|+.+||+.|....=.++... .+ ...+..++....+ ..+.+ ...-..+|++. .+|..+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~d~~~~~~~l~~-~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCN-DVVFLLVNGDENDSTMELCR-REKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCC-CCEEEEEECCCChHHHHHHH-HcCCCcCCEEEEEeCCeEE
Confidence 355566688999976443333211 11 2455666654332 23443 33456789887 466543
No 226
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=24.83 E-value=1.2e+02 Score=16.17 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=20.4
Q ss_pred CCCCCeEeeCCeEeeehHHHHHHHH
Q 028416 77 SNKVPSLEHNGKIIGESLDLINYVD 101 (209)
Q Consensus 77 ~~~vP~L~~~~~~l~eS~aI~~yL~ 101 (209)
.|.+|....++..+.....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 5788887777888888889888875
No 227
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=24.73 E-value=2.4e+02 Score=19.33 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=38.2
Q ss_pred ceEEEeeCC--CchHHHHHHHHHhcCCCC--ceeEEeccCCCChhhhhhhcCCCCCCCeEe--eCCeEeee
Q 028416 28 TTRLYMAYT--CPFAQRVWITRNYKGLQD--EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGE 92 (209)
Q Consensus 28 ~~~Ly~~~~--sp~~~~v~~~l~~~gv~~--~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l~e 92 (209)
.+..|+..+ ||-|..+.=+|+..--.| ...+..++..+.+ .+.. ...-..+|++. .+|..+..
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~-~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAA-RFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHH-HcCCCcCCEEEEEECCEEEEE
Confidence 355666564 999987775554433322 1455566665554 4444 45567899998 57776544
No 228
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=22.87 E-value=2e+02 Score=17.74 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=20.8
Q ss_pred CCCCeEeeCCeEeeehHHHHHHHHhcC
Q 028416 78 NKVPSLEHNGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 78 ~~vP~L~~~~~~l~eS~aI~~yL~~~~ 104 (209)
.+=||+...| ...|-.+|.+||.+..
T Consensus 14 M~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 14 MRDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp -SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hhCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 3559988777 8889999999999843
No 229
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=22.80 E-value=1.5e+02 Score=18.24 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=16.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhc
Q 028416 29 TRLYMAYTCPFAQRVWITRNYK 50 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~ 50 (209)
+.+|....||+|....-.++..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3577788999999877666654
No 230
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=22.51 E-value=2.2e+02 Score=18.12 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=30.9
Q ss_pred ceEEEeeCCCchHHHHH-----HHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEe--eCCe
Q 028416 28 TTRLYMAYTCPFAQRVW-----ITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLE--HNGK 88 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~-----~~l~~~gv~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~--~~~~ 88 (209)
.+.+|+.++|+.|.... ++-.+.+ ...+.+..++.... ...+.. ......+|+++ .+|.
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~-~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTKPEHDALKE-EYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCCCccHHHHH-hCCCccccEEEEEeCCC
Confidence 36677778999998753 2212221 11244555555431 233333 33456789887 3444
No 231
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=22.48 E-value=3.9e+02 Score=23.51 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=32.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCC-----eEeeeh
Q 028416 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNG-----KIIGES 93 (209)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~-----~~l~eS 93 (209)
.+++-.-.|...+.+..+|+...++ |+... ....|.+|+|.+++ .+|.|.
T Consensus 63 LVFvES~YS~lGq~Iv~ILes~Rf~--y~~ei-------------~~~kg~lP~LT~~~kGRy~lII~EN 117 (487)
T PF12062_consen 63 LVFVESQYSQLGQDIVAILESNRFK--YKVEI-------------ASGKGDLPVLTDNDKGRYSLIIFEN 117 (487)
T ss_pred EEEEeeccchhhHHHHHHHHhceee--EEEEE-------------ccCCCCCCccccCCCCcEEEEEehh
Confidence 3344445678888999999999986 44432 23346889998543 356664
No 232
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=21.56 E-value=2.2e+02 Score=17.86 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=31.5
Q ss_pred ceEEEeeCCCchHHH----HHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEe
Q 028416 28 TTRLYMAYTCPFAQR----VWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (209)
Q Consensus 28 ~~~Ly~~~~sp~~~~----v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 84 (209)
...||....+|.|.+ ++-+|+..- ++.|++.-+|..+.++.. + ....--.|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lA-e-~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLA-E-EDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHH-h-hCCEEEechhh
Confidence 367888887788865 444455443 345777777776665533 1 33333456665
No 233
>PHA03075 glutaredoxin-like protein; Provisional
Probab=21.32 E-value=2.2e+02 Score=19.82 Aligned_cols=67 Identities=9% Similarity=0.123 Sum_probs=41.5
Q ss_pred CceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEee-CCeEeeehHHHHHHHHhcC
Q 028416 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEH-NGKIIGESLDLINYVDSNF 104 (209)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~l~eS~aI~~yL~~~~ 104 (209)
.+++|+|-+.|+-|.-+.-+|....-. |++..++.-.- .+-.|.+=+|.. .+..+ =+.+.+||...|
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~lede--Y~ilrVNIlSf-------FsK~g~v~~lg~d~~y~l--Inn~~~~lgne~ 70 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDE--YDILRVNILSF-------FSKDGQVKVLGMDKGYTL--INNFFKHLGNEY 70 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhcc--ccEEEEEeeee-------eccCCceEEEecccceeh--HHHHHHhhcccE
Confidence 568999999999999999999777664 66665554211 222344555542 22222 245667776544
No 234
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.12 E-value=1.6e+02 Score=19.51 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=40.9
Q ss_pred chHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEeeCCeEeeehHHHHHHHHhcCCCCCC
Q 028416 38 PFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPSL 109 (209)
Q Consensus 38 p~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~l 109 (209)
|-+....-.|+..|.+ +.+..=.....++.+.+++...| ++ +..+.+++-..++..||.++++....
T Consensus 17 pga~e~l~~L~~~g~~--~~~lTNns~~s~~~~~~~L~~~G-i~--~~~~~i~ts~~~~~~~l~~~~~~~~v 83 (101)
T PF13344_consen 17 PGAVEALDALRERGKP--VVFLTNNSSRSREEYAKKLKKLG-IP--VDEDEIITSGMAAAEYLKEHKGGKKV 83 (101)
T ss_dssp TTHHHHHHHHHHTTSE--EEEEES-SSS-HHHHHHHHHHTT-TT----GGGEEEHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHHHHHHHcCCC--EEEEeCCCCCCHHHHHHHHHhcC-cC--CCcCEEEChHHHHHHHHHhcCCCCEE
Confidence 4455556667777875 55554444444455554344444 44 34578999999999999997665544
No 235
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.09 E-value=1e+02 Score=24.14 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=16.7
Q ss_pred CCceEEEeeCCCchHHH----HHHHHHhcC
Q 028416 26 DGTTRLYMAYTCPFAQR----VWITRNYKG 51 (209)
Q Consensus 26 ~~~~~Ly~~~~sp~~~~----v~~~l~~~g 51 (209)
+-++.+|+-..||||+. ..-++...+
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcC
Confidence 34566777788999974 444444444
No 236
>PF12728 HTH_17: Helix-turn-helix domain
Probab=20.79 E-value=1.7e+02 Score=16.24 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCCCCCeEeeCCeEeeehHHHHHHHHhc
Q 028416 76 PSNKVPSLEHNGKIIGESLDLINYVDSN 103 (209)
Q Consensus 76 p~~~vP~L~~~~~~l~eS~aI~~yL~~~ 103 (209)
-.|.+|....++.....-..|.+|+.++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 3578888888888999999999998764
No 237
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=20.15 E-value=90 Score=23.54 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=18.1
Q ss_pred CCeEeeehHHHHHHHHhcCC
Q 028416 86 NGKIIGESLDLINYVDSNFE 105 (209)
Q Consensus 86 ~~~~l~eS~aI~~yL~~~~~ 105 (209)
.+..|++|..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 34789999999999999998
No 238
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=20.06 E-value=2.4e+02 Score=20.35 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=44.7
Q ss_pred CCCCCceEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcC-C--CCCCCeEeeCCeEee---ehHHH
Q 028416 23 PLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVY-P--SNKVPSLEHNGKIIG---ESLDL 96 (209)
Q Consensus 23 ~~~~~~~~Ly~~~~sp~~~~v~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~-p--~~~vP~L~~~~~~l~---eS~aI 96 (209)
....-+++.|..+.|++|..-.=.++.+|. +++.+...+-.. +++++. | +.-.=+.+.+|..+- --.+|
T Consensus 22 ~a~~~~~~vyksPnCGCC~~w~~~mk~~Gf----~Vk~~~~~d~~a-lK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI 96 (149)
T COG3019 22 QAQATEMVVYKSPNCGCCDEWAQHMKANGF----EVKVVETDDFLA-LKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAI 96 (149)
T ss_pred hcceeeEEEEeCCCCccHHHHHHHHHhCCc----EEEEeecCcHHH-HHHhcCCChhhccccEEEEcCEEEeccCCHHHH
Confidence 345567999999999999877777787774 454444333211 111011 1 111223344554433 25789
Q ss_pred HHHHHhcC
Q 028416 97 INYVDSNF 104 (209)
Q Consensus 97 ~~yL~~~~ 104 (209)
.+.|+++.
T Consensus 97 ~~ll~~~p 104 (149)
T COG3019 97 ARLLAEKP 104 (149)
T ss_pred HHHHhCCC
Confidence 99999886
Done!