BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028418
MAGTAFPSTLVIQTSHISFTSQKKSFELANPSSLIFNFEKKVLFRCSAKKKISFVDQILD
YIEGGPKLRKWYGAPDLLPKDGSNEEDEEKEDEFPEEARDAVLVTDGDSDIGQMVILSLI
VKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGFISNAGS
LKGVQHVILLSQRQRWHSSSNERKCQKIG

High Scoring Gene Products

Symbol, full name Information P value
AT1G72640 protein from Arabidopsis thaliana 1.9e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028418
        (209 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2030270 - symbol:AT1G72640 species:3702 "Arabi...   534  1.9e-51   1


>TAIR|locus:2030270 [details] [associations]
            symbol:AT1G72640 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] InterPro:IPR016040 EMBL:CP002684
            GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0009535 EMBL:BT011739
            IPI:IPI00533777 RefSeq:NP_177408.3 UniGene:At.35075
            ProteinModelPortal:Q6NMC1 SMR:Q6NMC1 PRIDE:Q6NMC1
            EnsemblPlants:AT1G72640.1 GeneID:843596 KEGG:ath:AT1G72640
            TAIR:At1g72640 HOGENOM:HOG000265886 InParanoid:Q6NMC1 OMA:AFGTYVE
            PhylomeDB:Q6NMC1 ProtClustDB:CLSN2681414 Genevestigator:Q6NMC1
            Uniprot:Q6NMC1
        Length = 312

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 112/204 (54%), Positives = 140/204 (68%)

Query:     1 MAGTAFPSTLVIQTSHISFTSQKKSFELANPSSLIFNFEKKVLFRCSAKKKISFVDQILD 60
             MAGT+ PS L+ Q   + F+S  +  E AN   +     K+ L RC AKKKISFVDQILD
Sbjct:     1 MAGTSLPSCLLSQGPSLLFSSSNQDSE-ANKCRIGITSGKRCLVRCFAKKKISFVDQILD 59

Query:    61 YIEGGPKLRKWYGAPDLLPKDGS-----NXXXXXXXXXXXXXARDAVLVTDGDSDIGQMV 115
             YIEGGPKLRKWYGAP+L PKDGS     +              +D V VTDGDSD+GQM+
Sbjct:    60 YIEGGPKLRKWYGAPELRPKDGSLSGDDDEFEAEEKEDDLDGEKDVVFVTDGDSDLGQMI 119

Query:   116 ILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGFI 175
             IL LIVK TR+KALVKDKR A+E+FG+YVE   GDAS+++FLK A +GV ++I P+EGF+
Sbjct:   120 ILQLIVKGTRVKALVKDKRKALEAFGSYVELTTGDASDERFLKKAFKGVGAVISPTEGFL 179

Query:   176 SNAGSLKGVQHVILLSQRQRWHSS 199
             S   S +GV+H +LLSQ   + SS
Sbjct:   180 SIVKSFRGVKHAVLLSQLSVYESS 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       196   0.00080  111 3  11 22  0.46    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.52u 0.08s 16.60t   Elapsed:  00:00:04
  Total cpu time:  16.52u 0.08s 16.60t   Elapsed:  00:00:04
  Start:  Fri May 10 19:32:22 2013   End:  Fri May 10 19:32:26 2013

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