BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028418
         (209 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph And
           L-Sorbose
 pdb|3AI3|C Chain C, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph And
           L-Sorbose
 pdb|3AI3|E Chain E, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph And
           L-Sorbose
 pdb|3AI3|G Chain G, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph And
           L-Sorbose
          Length = 263

 Score = 28.1 bits (61), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 119 LIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGFISNA 178
           +++   ++  L +  R+  E FG  V  +A D +  + +   +  VRS    ++  ++NA
Sbjct: 34  IVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNA 93

Query: 179 GSLKGVQHVILLSQRQRWH 197
           G+  G    I+ +  ++W 
Sbjct: 94  GT--GSNETIMEAADEKWQ 110


>pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph And
           L-Sorbose Reveals The Structure Bases Of Its Catalytic
           Mechanism And High Substrate Selectivity
 pdb|3AI1|B Chain B, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph And
           L-Sorbose Reveals The Structure Bases Of Its Catalytic
           Mechanism And High Substrate Selectivity
 pdb|3AI2|A Chain A, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph
 pdb|3AI2|B Chain B, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph
 pdb|3AI2|H Chain H, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph
 pdb|3AI2|D Chain D, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph
 pdb|3AI2|E Chain E, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph
 pdb|3AI2|C Chain C, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph
 pdb|3AI2|F Chain F, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph
 pdb|3AI2|G Chain G, The Crystal Structure Of L-Sorbose Reductase From
           Gluconobacter Frateurii Complexed With Nadph
          Length = 263

 Score = 27.7 bits (60), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 119 LIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGFISNA 178
           +++   ++  L +  R+  E FG  V  +A D +  + +   +  VRS    ++  ++NA
Sbjct: 34  IVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNA 93

Query: 179 GSLKGVQHVILLSQRQRWH 197
           G+  G    I+ +  ++W 
Sbjct: 94  GT--GSNETIMEAADEKWQ 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,308,188
Number of Sequences: 62578
Number of extensions: 181792
Number of successful extensions: 353
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 5
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)