BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028418
         (209 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8KU07|AZOB_XENAZ NAD(P)H azoreductase OS=Xenophilus azovorans GN=azoB PE=1 SV=2
          Length = 286

 Score = 37.0 bits (84), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 102 VLVTDGDSDIGQMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL 161
           +LV  G   IG  V+  L   +   KALV+D   A E     V++ AGD    + L  AL
Sbjct: 2   ILVVGGTGTIGSEVVRLLQEAKLPFKALVRDAAKARELNARGVQTAAGDLREPRTLPAAL 61

Query: 162 RGVRSI-----ICPSE----GFISNAGSLKGVQHVILLS----------QRQRWHSSSNE 202
            GV  +     + P +      +  A    GV+H ++ +          Q  RW    N+
Sbjct: 62  GGVDKVFVVTPLVPDQVQMRAALITAAKTAGVKHFVMSTGIGAAPDSPVQIGRWL-GENQ 120

Query: 203 RKCQKIG 209
           ++ Q+ G
Sbjct: 121 QQVQESG 127


>sp|P49534|YCF39_ODOSI Uncharacterized protein ycf39 OS=Odontella sinensis GN=ycf39 PE=3
           SV=1
          Length = 319

 Score = 35.8 bits (81), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 101 AVLVTDGDSDIGQMVILSLIVKRTRIKALVKDKR--NAMESFGTYVESMAGDASNKKFLK 158
           ++L+  G   +G+ V+L  + K  +++ LV++ R  N ++ +G   E + GD S  + + 
Sbjct: 2   SLLIIGGTGTLGRQVVLQALTKGYQVRCLVRNFRKANFLKEWGA--ELIYGDLSRPETIP 59

Query: 159 TALRGVRSIICPSEGFISNAGSLKGV 184
             L+G+ ++I  S    S+  +LK V
Sbjct: 60  PCLQGITAVIDTSTSRPSDLDTLKQV 85


>sp|B2AL40|NOP9_PODAN Nucleolar protein 9 OS=Podospora anserina (strain S / ATCC MYA-4624
           / DSM 980 / FGSC 10383) GN=NOP9 PE=3 SV=1
          Length = 834

 Score = 30.8 bits (68), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 36  FNFEKKVLFRCSAKKKISFVDQILDYIEGGPKLRKWYGAPDLLPKDGSNEEDEEKEDEF- 94
            N  +    RC  +   + +DQ+L  +         +  P L P +  NEED+ KE +F 
Sbjct: 493 LNVVRTYFERCHVRNATAQLDQLLQALTKACNNNWKHIVPKLCPLEEENEEDKSKEKKFQ 552

Query: 95  PEEARD-AVLVTDG 107
           P E ++   L++ G
Sbjct: 553 PAEVKNKTALLSHG 566


>sp|A5D1U6|DER_PELTS GTPase Der OS=Pelotomaculum thermopropionicum (strain DSM 13744 /
           JCM 10971 / SI) GN=der PE=3 SV=1
          Length = 440

 Score = 30.8 bits (68), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 23/108 (21%)

Query: 32  SSLIFNFEKKVLFRCSAKKKISFVDQILDYIEGGPKLRKWYGAPDLLP---KDGSNEED- 87
           +S+I   EK  L   +  +K   ++QI D+           G  D LP    +G N  D 
Sbjct: 105 ASIIRRAEKPALLVANKVEKFDSLEQIYDFYR--------LGLGDPLPVSAAEGLNTGDL 156

Query: 88  ---------EEKEDEFPEEARDAVLVTDGDSDIGQMVILSLIVKRTRI 126
                     EKEDE+P EA    ++  G  ++G+  +++LI+   R+
Sbjct: 157 LDRLVEMLPPEKEDEYPPEAIKIAVI--GRPNVGKSSLVNLILGEERV 202


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,893,826
Number of Sequences: 539616
Number of extensions: 3084607
Number of successful extensions: 15424
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 15361
Number of HSP's gapped (non-prelim): 73
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)