BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028419
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana
GN=ORTH2 PE=1 SV=1
Length = 645
Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 72/92 (78%), Gaps = 2/92 (2%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+ PVTTPCAHNFCK+CLE F+GK+ VRERS GGR LRS+K ++ CP C TDISDFL++
Sbjct: 525 LTLPVTTPCAHNFCKACLEAKFAGKTLVRERSTGGRTLRSRKNVLNCPCCPTDISDFLQN 584
Query: 61 PQVNRELMEVIESLKQKTEEDDELAEESNDEG 92
PQVNRE+ EVIE LK + E+ EL +E DEG
Sbjct: 585 PQVNREVAEVIEKLKTQEEDTAELEDE--DEG 614
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 17/73 (23%)
Query: 3 QPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQ 62
+PVT PC HN C C E+ + ++T KC S + K+P+
Sbjct: 155 RPVTKPCGHNACLKCFEKWMG---------------QGKRTCGKCRSIIPE--KMAKNPR 197
Query: 63 VNRELMEVIESLK 75
+N L+ I K
Sbjct: 198 INSSLVAAIRLAK 210
>sp|Q9FKA7|ORTH1_ARATH E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana
GN=ORTH1 PE=1 SV=1
Length = 617
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 68/82 (82%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
++ PVTTPCAHNFCK+CLE F+G + +RERS GGR LR++K IM CP CTTD+S+FL++
Sbjct: 502 LSLPVTTPCAHNFCKACLEAKFAGITQLRERSNGGRKLRAKKNIMTCPCCTTDLSEFLQN 561
Query: 61 PQVNRELMEVIESLKQKTEEDD 82
PQVNRE+ME+IE+ K+ EE D
Sbjct: 562 PQVNREMMEIIENFKKSEEEAD 583
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 18/70 (25%)
Query: 3 QPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFL-KDP 61
+P+TTPC HNFC C E+ G+ G+ + C C + I + K+P
Sbjct: 138 RPITTPCGHNFCLKCFEKWAVGQ---------GK--------LTCMICRSKIPRHVAKNP 180
Query: 62 QVNRELMEVI 71
++N L+ I
Sbjct: 181 RINLALVSAI 190
>sp|Q9FVS2|ORTH3_ARATH E3 ubiquitin-protein ligase ORTHRUS 3 OS=Arabidopsis thaliana
GN=ORTH3 PE=3 SV=2
Length = 660
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 59/71 (83%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
M PVTTPCAHNFCK+CLE F+G + VRER GGR LRSQK++MKCP C TDI++F+++
Sbjct: 535 MTNPVTTPCAHNFCKACLESKFAGTALVRERGSGGRKLRSQKSVMKCPCCPTDIAEFVQN 594
Query: 61 PQVNRELMEVI 71
PQVNRE+ EVI
Sbjct: 595 PQVNREVAEVI 605
>sp|Q9C8E1|ORTH4_ARATH Putative E3 ubiquitin-protein ligase ORTHRUS 4 OS=Arabidopsis
thaliana GN=ORTH4 PE=3 SV=1
Length = 622
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 64/76 (84%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
++ PVTTPCAHNFCK+CLE F+G + +R+RS G R LR++K IM CP CTTD+S+FL++
Sbjct: 505 LSLPVTTPCAHNFCKACLEAKFAGITQLRDRSNGVRKLRAKKNIMTCPCCTTDLSEFLQN 564
Query: 61 PQVNRELMEVIESLKQ 76
PQVNRE+ME+IE+ K+
Sbjct: 565 PQVNREMMEIIENFKK 580
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 18/71 (25%)
Query: 3 QPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFL-KDP 61
+PVTTPC HNFC C E+ G+ G+ + C C + I + K+P
Sbjct: 138 RPVTTPCGHNFCLKCFEKWAVGQ---------GK--------LTCMICRSKIPRHVAKNP 180
Query: 62 QVNRELMEVIE 72
++N L+ I
Sbjct: 181 RINLALVSAIR 191
>sp|Q680I0|ORTH5_ARATH E3 ubiquitin-protein ligase ORTHRUS 5 OS=Arabidopsis thaliana
GN=ORTH5 PE=2 SV=1
Length = 623
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 64/76 (84%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
++ PVTTPCAHNFCK+CLE F+G + +R+RS G R LR++K IM CP CTTD+S+FL++
Sbjct: 505 LSLPVTTPCAHNFCKACLEAKFAGITQLRDRSNGVRKLRAKKNIMTCPCCTTDLSEFLQN 564
Query: 61 PQVNRELMEVIESLKQ 76
PQVNRE+ME+IE+ K+
Sbjct: 565 PQVNREMMEIIENFKK 580
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 18/71 (25%)
Query: 3 QPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFL-KDP 61
+PVTTPC HNFC C E+ G+ G+ + C C + I + K+P
Sbjct: 138 RPVTTPCGHNFCLKCFEKWAVGQ---------GK--------LTCMICRSKIPRHVAKNP 180
Query: 62 QVNRELMEVIE 72
++N L+ I
Sbjct: 181 RINLALVSAIR 191
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 22/84 (26%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
M P+ TPC HN+C CL F A +QK + CP C +DI+
Sbjct: 37 MFVPMMTPCGHNYCYGCLNTWF--------------ASNTQKE-LACPQCRSDITTI--- 78
Query: 61 PQVNRELME----VIESLKQKTEE 80
P +N L + ++E L+ + +E
Sbjct: 79 PALNTTLQQYLSFILEKLRDQNDE 102
>sp|Q922Y2|TRI59_MOUSE Tripartite motif-containing protein 59 OS=Mus musculus GN=Trim59
PE=2 SV=2
Length = 403
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 4 PVTTPCAHNFCKSCLEEAF--SGKSFVRERSRGGRALRSQKTIMKCPSCTTDI---SDFL 58
P PC+H FC++CLE SG ++ R LR +KCP+C + I S +
Sbjct: 20 PRVLPCSHTFCRNCLENVLQASGNFYI------WRPLRIP---LKCPNCRSIIEIASTGI 70
Query: 59 KDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGI-SDLVPESSKSSGKHH 114
+ VN L +IE +Q+ D E + + + LV + G+HH
Sbjct: 71 ESLPVNFALRAIIEKYQQEDHPDVVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHH 127
>sp|E7EZF3|UHRF1_DANRE E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1
Length = 776
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+ QP+TT C HN C+ CL+ +F K + CP+C D+ K+
Sbjct: 713 VYQPITTECQHNVCRECLQRSFKAKVYT------------------CPACRHDLG---KN 751
Query: 61 PQ--VNRELMEVIESL 74
Q VN+ L ++ L
Sbjct: 752 YQMAVNKPLQAILTQL 767
>sp|Q96T88|UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1
SV=1
Length = 793
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+ +P+TT C HN CK CL+ +F + F CP+C D+
Sbjct: 731 VFRPITTVCQHNVCKDCLDRSFRAQVF------------------SCPACRYDLGRSYA- 771
Query: 61 PQVNRELMEVIESL 74
QVN+ L V+ L
Sbjct: 772 MQVNQPLQTVLNQL 785
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+PVTTPC H+FCK+CLE + CP C + ++L D
Sbjct: 486 FFEPVTTPCGHSFCKNCLERCLDHAPY-------------------CPLCKESLKEYLAD 526
Query: 61 PQV-NRELME--VIESLKQKTEEDDELAEESNDEGTDASEGISDLV 103
+ +L+E +++ L + E ++ +E E + ++ + V
Sbjct: 527 RRYCVTQLLEELIVKYLPDELSERKKIYDEETAELSHLTKNVPIFV 572
>sp|Q7TPK1|UHRF1_RAT E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1
PE=2 SV=2
Length = 774
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+ +PVTT C HN CK CL+ +F + F CP+C D+ D
Sbjct: 712 VFRPVTTVCQHNVCKDCLDRSFRAQVF------------------SCPACRYDL-DHSSP 752
Query: 61 PQVNRELMEVIESL 74
+VN+ L ++ L
Sbjct: 753 TRVNQPLQTILNQL 766
>sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens GN=TRIM25 PE=1
SV=2
Length = 630
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 3 QPVTTPCAHNFCKSCLEEAFS--GKSFVRERSRGGRALRSQ 41
+PVTTPC HNFC SCL E ++ G ++ + R R Q
Sbjct: 22 EPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRAVYQARPQ 62
>sp|Q8IWR1|TRI59_HUMAN Tripartite motif-containing protein 59 OS=Homo sapiens GN=TRIM59
PE=2 SV=1
Length = 403
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 4 PVTTPCAHNFCKSCLEEAF--SGKSFVRERSRGGRALRSQKTIMKCPSC--TTDISDF-L 58
P PC+H FC++CLE SG ++ R LR +KCP+C T+I+ +
Sbjct: 20 PRVLPCSHTFCRNCLENILQASGNFYI------WRPLRIP---LKCPNCRSITEIAPTGI 70
Query: 59 KDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGI-SDLVPESSKSSGKHH 114
+ VN L +IE +Q+ D E + + + LV + G+HH
Sbjct: 71 ESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHH 127
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 19/64 (29%)
Query: 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQV 63
PV C HNFC+SC+++A+ G+S CP C I+D + +
Sbjct: 155 PVMVACGHNFCRSCIDKAWEGQS-----------------SFACPECRESITD--RKYTI 195
Query: 64 NREL 67
NR L
Sbjct: 196 NRVL 199
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAF 22
+PVTTPC HNFC SCL+E +
Sbjct: 20 FKEPVTTPCGHNFCMSCLDETW 41
>sp|Q96PU4|UHRF2_HUMAN E3 ubiquitin-protein ligase UHRF2 OS=Homo sapiens GN=UHRF2 PE=1
SV=1
Length = 802
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 25/75 (33%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS-DFLK 59
+ QPVTT C HN CK CL+ +F + F CP+C D+ +++
Sbjct: 740 VYQPVTTECFHNVCKDCLQRSFKAQVF------------------SCPACRHDLGQNYIM 781
Query: 60 DPQVNRELMEVIESL 74
P E++++L
Sbjct: 782 IPN------EILQTL 790
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+PVTTPC H FC CLE + KCP C +S L
Sbjct: 474 FYEPVTTPCGHTFCLKCLERCLDHNA-------------------KCPLCKDGLSQCLAS 514
Query: 61 PQVNRE-LME--VIESLKQKTEEDDELAEESNDEGTDASEGISDLV 103
+ ++ +ME + + L ++ +E +L EE +E ++ ++ + V
Sbjct: 515 RKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKNVPIFV 560
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+PVTTPC H FC CLE + KCP C +S L
Sbjct: 433 FYEPVTTPCGHTFCLKCLERCLDHNA-------------------KCPLCKDGLSQCLAS 473
Query: 61 PQVNRE-LME--VIESLKQKTEEDDELAEESNDEGTDASEGISDLV 103
+ ++ +ME + + L ++ +E +L EE +E ++ ++ + V
Sbjct: 474 RKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKNVPIFV 519
>sp|Q7TMI3|UHRF2_MOUSE E3 ubiquitin-protein ligase UHRF2 OS=Mus musculus GN=Uhrf2 PE=1
SV=1
Length = 803
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 18/54 (33%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDI 54
+ QPVTT C HN CK CL+ +F + F CP+C D+
Sbjct: 741 VYQPVTTECFHNVCKDCLQRSFKAQVF------------------SCPACRHDL 776
>sp|P67048|TYSY_STAAW Thymidylate synthase OS=Staphylococcus aureus (strain MW2) GN=thyA
PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|Q6G9D4|TYSY_STAAS Thymidylate synthase OS=Staphylococcus aureus (strain MSSA476)
GN=thyA PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|P67047|TYSY_STAAN Thymidylate synthase OS=Staphylococcus aureus (strain N315) GN=thyA
PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|P67046|TYSY_STAAM Thymidylate synthase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=thyA PE=1 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|A5ISV8|TYSY_STAA9 Thymidylate synthase OS=Staphylococcus aureus (strain JH9) GN=thyA
PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|A6U1P7|TYSY_STAA2 Thymidylate synthase OS=Staphylococcus aureus (strain JH1) GN=thyA
PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|A7X2B3|TYSY_STAA1 Thymidylate synthase OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=thyA PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|A8Z406|TYSY_STAAT Thymidylate synthase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=thyA PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|Q6GGY0|TYSY_STAAR Thymidylate synthase OS=Staphylococcus aureus (strain MRSA252)
GN=thyA PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|A6QGX8|TYSY_STAAE Thymidylate synthase OS=Staphylococcus aureus (strain Newman)
GN=thyA PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|Q5HFZ6|TYSY_STAAC Thymidylate synthase OS=Staphylococcus aureus (strain COL) GN=thyA
PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|Q2YY40|TYSY_STAAB Thymidylate synthase OS=Staphylococcus aureus (strain bovine RF122
/ ET3-1) GN=thyA PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|Q2FYK5|TYSY_STAA8 Thymidylate synthase OS=Staphylococcus aureus (strain NCTC 8325)
GN=thyA PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|Q2FH11|TYSY_STAA3 Thymidylate synthase OS=Staphylococcus aureus (strain USA300)
GN=thyA PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 53 DISDF----LKDPQVNRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSK 108
D++DF L DP+ N + E ++ KQ+ EDD A++ D G + D V +
Sbjct: 103 DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDK--- 159
Query: 109 SSGKHHEE--TIVTGCSHNP 126
G H ++ T++ HNP
Sbjct: 160 -DGNHFDQLKTVIEQIKHNP 178
>sp|Q8VDF2|UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1
SV=2
Length = 782
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+ +PVTT C HN CK CL+ +F + F CP+C ++ D
Sbjct: 720 VFRPVTTVCQHNVCKDCLDRSFRAQVF------------------SCPACRFEL-DHSSP 760
Query: 61 PQVNRELMEVIESL 74
+VN+ L ++ L
Sbjct: 761 TRVNQPLQTILNQL 774
>sp|A7E320|UHRF1_BOVIN E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1
Length = 786
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 19/74 (25%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+ +P+TT C HN CK CL+ +F + F CP+C D+
Sbjct: 724 VFRPITTVCQHNVCKDCLDRSFKAQVF------------------SCPACRYDLGRSYA- 764
Query: 61 PQVNRELMEVIESL 74
VN+ L V+ L
Sbjct: 765 MTVNQPLQAVLSQL 778
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 19/64 (29%)
Query: 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQV 63
PV C HNFC+SC+++ + G+S CP C I+D + +
Sbjct: 156 PVMVACGHNFCRSCIDKVWEGQS-----------------SFACPECKESITD--RKYTI 196
Query: 64 NREL 67
NR L
Sbjct: 197 NRVL 200
>sp|Q5ZMD4|TRI59_CHICK Tripartite motif-containing protein 59 OS=Gallus gallus GN=TRIM59
PE=2 SV=1
Length = 408
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDI---SDFLKD 60
P PC+H FC+SCLE V + S R + +KCP+C + + + +
Sbjct: 20 PRVLPCSHTFCRSCLEG-------VIQLSSNFSIWRPLRVPLKCPNCRSIVEIPASGTES 72
Query: 61 PQVNRELMEVIESLKQKTEED 81
+N L +IE +Q+ D
Sbjct: 73 LPINFALKAIIEKYRQEDHSD 93
>sp|F6UA42|UHRF1_XENTR E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1
PE=3 SV=2
Length = 775
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+ +P+TT C HN CK CL+ +F +AL + CP+C D+
Sbjct: 713 VYEPITTECHHNICKGCLDRSF-------------KAL-----VHNCPACRHDLGKNY-S 753
Query: 61 PQVNRELMEVIESL 74
VN+ L ++ L
Sbjct: 754 LNVNKPLQAILSQL 767
>sp|Q495X7|TRI60_HUMAN Tripartite motif-containing protein 60 OS=Homo sapiens GN=TRIM60
PE=2 SV=2
Length = 471
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 45/161 (27%)
Query: 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSC--TTDISDFLKDP 61
PVT C HNFC+SCL ++ + CP C F ++P
Sbjct: 26 PVTINCGHNFCRSCLSVSW----------------KDLDDTFPCPVCRFCFPYKSFRRNP 69
Query: 62 QVNRELMEVIESL-----KQKTEEDDELAEESNDEGTDASEGISDLVPESSKSSGKHHEE 116
Q+ R L E+ + L K+K ++++ + E+ N T + DL E
Sbjct: 70 QL-RNLTEIAKQLQIRRSKRKRQKENAMCEKHNQFLTLFC--VKDL-------------E 113
Query: 117 TIVTGCS----HNPQVKCTPERASKRKKVDVEDSL--GRNN 151
+ T CS H C ++A+ + +E SL RNN
Sbjct: 114 ILCTQCSFSTKHQKHYICPIKKAASYHREILEGSLEPLRNN 154
>sp|Q32L60|TRI13_BOVIN E3 ubiquitin-protein ligase TRIM13 OS=Bos taurus GN=TRIM13 PE=2
SV=2
Length = 407
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDF-LKDPQ 62
P PC+HNFCK CLE G R+ R+ + KCP+C + S + Q
Sbjct: 20 PRVLPCSHNFCKKCLEGILEGNV----RNSLWRS-----SPFKCPTCRKETSATGVNSLQ 70
Query: 63 VNRELMEVIE 72
VN L ++E
Sbjct: 71 VNYSLKGIVE 80
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 23/77 (29%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLK- 59
+ +PVT PC H CK C E S CP C +S + +
Sbjct: 23 LFEPVTLPCNHTLCKPCFESTVEKASLC------------------CPFCRRRVSSWARY 64
Query: 60 ----DPQVNRELMEVIE 72
+ VN EL E+I+
Sbjct: 65 RSRTNSLVNMELWEIIQ 81
>sp|B6CHA3|UHRF1_XENLA E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis GN=uhrf1 PE=2
SV=1
Length = 772
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
+ +PVTT C HN CK CL+ +F +AL + CP+C D+
Sbjct: 710 VYEPVTTECHHNICKGCLDRSF-------------KAL-----VHSCPACRHDLGKNYP- 750
Query: 61 PQVNRELMEVIESL 74
VN+ L ++ L
Sbjct: 751 LNVNKPLQAILSQL 764
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 20/89 (22%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
M +P++ C H FCK C+ E GK+ GG + CP C L++
Sbjct: 27 MVEPMSIECGHCFCKECIFEV--GKN-------GGSS---------CPECRQQF--LLRN 66
Query: 61 PQVNRELMEVIESLKQKTEEDDELAEESN 89
+ NR + ++E+LKQ + + +E++
Sbjct: 67 LRPNRHIANMVENLKQIAQNTKKSTQETH 95
>sp|Q9CYB0|TRI13_MOUSE E3 ubiquitin-protein ligase TRIM13 OS=Mus musculus GN=Trim13 PE=2
SV=1
Length = 407
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDF-LKDPQ 62
P PC+HNFCK CLE G R+ R + KCP+C + S + Q
Sbjct: 20 PRVLPCSHNFCKKCLEGLLEGNV----RNSLWRP-----SPFKCPTCRKETSATGVNSLQ 70
Query: 63 VNRELMEVIE 72
VN L ++E
Sbjct: 71 VNYSLKGIVE 80
>sp|Q5M7V1|TRI13_RAT Tripartite motif-containing 13 OS=Rattus norvegicus GN=Trim13
PE=2 SV=1
Length = 407
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDF-LKDPQ 62
P PC+HNFCK CLE G R+ R + KCP+C + S + Q
Sbjct: 20 PRVLPCSHNFCKKCLEGLLEGNV----RNSLWRP-----SPFKCPTCRKETSATGVNSLQ 70
Query: 63 VNRELMEVIE 72
VN L ++E
Sbjct: 71 VNYSLKGIVE 80
>sp|A6NK02|TRI75_HUMAN Putative tripartite motif-containing protein 75 OS=Homo sapiens
GN=TRIM75 PE=5 SV=2
Length = 468
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISD--FL 58
++ PVT C HNFC+SC+++++ + + CP C + F
Sbjct: 23 LSDPVTIECGHNFCRSCIQQSW----------------LDLQELFPCPVCRHQCQEGHFR 66
Query: 59 KDPQVNR--ELMEVIESLK--QKTEEDDELAEESNDE-GTDASEGISDLVPESSKSSGK- 112
+ Q+ R E+ ++++S K ++ +E+ L E+ N E + L P ++
Sbjct: 67 SNTQLGRMIEIAKLLQSTKSNKRKQEETTLCEKHNQPLSVFCKEDLMVLCPLCTQPPDHQ 126
Query: 113 -HHEETIVTGCSHNPQVKCTPERASKRKKVDVE 144
HH I H + C+ + K++ D++
Sbjct: 127 GHHVRPIEKAAIHYRKRFCSYIQPLKKQLADLQ 159
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 17/76 (22%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDI-SDFLK 59
+ +PVT C HNFC C+ + + E S G KCP C T + + ++
Sbjct: 23 LQKPVTIDCGHNFCLKCITQ-------IGETSCG---------FFKCPLCKTSVRKNAIR 66
Query: 60 DPQVNRELMEVIESLK 75
+ R L+E I++L+
Sbjct: 67 FNSLLRNLVEKIQALQ 82
>sp|O60858|TRI13_HUMAN E3 ubiquitin-protein ligase TRIM13 OS=Homo sapiens GN=TRIM13 PE=1
SV=2
Length = 407
Score = 37.0 bits (84), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDF-LKDPQ 62
P PC+HNFCK CLE G R+ R KCP+C + S + Q
Sbjct: 20 PRVLPCSHNFCKKCLEGILEGSV----RNSLWRP-----APFKCPTCRKETSATGINSLQ 70
Query: 63 VNRELMEVIE 72
VN L ++E
Sbjct: 71 VNYSLKGIVE 80
>sp|Q640S6|TRI72_XENTR Tripartite motif-containing protein 72 OS=Xenopus tropicalis
GN=trim72 PE=2 SV=1
Length = 477
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Query: 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQV 63
PVT C H FC+ CL G + Q CP+C T + Q+
Sbjct: 26 PVTPECGHTFCQGCLT--------------GAPKNQDQNGSTPCPTCQTPSRP--ETLQI 69
Query: 64 NRELMEVIESLKQKTEEDDELAEESNDEGTDASEGISDLVPESSKSSGKHHEETIVTGCS 123
NR+L +++S KQ + E D + E +L+ S GKH I+T
Sbjct: 70 NRQLEHLVQSFKQVPKGH---CLEHLDPLSVYCEQDKELICGVCASLGKHKGHNIITAAE 126
Query: 124 HNPQVK 129
++K
Sbjct: 127 AYAKLK 132
>sp|Q99PQ1|TR12A_MOUSE Tripartite motif-containing protein 12A OS=Mus musculus
GN=Trim12a PE=2 SV=1
Length = 284
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKD 60
M +PV+ C H FC+ C+ F +++ K + CP C IS +
Sbjct: 22 MVKPVSADCGHTFCQGCITLYFE-------------SIKCDKKVFICPVCR--ISYQFSN 66
Query: 61 PQVNRELMEVIESLK 75
+ NR + ++E LK
Sbjct: 67 LRPNRNVANIVERLK 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.123 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,887,064
Number of Sequences: 539616
Number of extensions: 3435643
Number of successful extensions: 15020
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 684
Number of HSP's that attempted gapping in prelim test: 13789
Number of HSP's gapped (non-prelim): 1659
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.9 bits)