Query 028419
Match_columns 209
No_of_seqs 134 out of 1329
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:35:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.3 2.8E-12 9.5E-17 93.5 5.4 61 1-79 23-84 (92)
2 1t1h_A Gspef-atpub14, armadill 99.3 1.7E-12 5.9E-17 91.9 3.2 58 1-78 18-75 (78)
3 2kre_A Ubiquitin conjugation f 99.2 6.5E-12 2.2E-16 95.1 4.8 58 1-79 39-96 (100)
4 3fl2_A E3 ubiquitin-protein li 99.2 9.2E-12 3.1E-16 95.8 5.5 58 1-77 62-119 (124)
5 2kr4_A Ubiquitin conjugation f 99.2 6.4E-12 2.2E-16 92.0 4.2 57 1-78 24-80 (85)
6 2yu4_A E3 SUMO-protein ligase 99.2 7E-12 2.4E-16 93.2 3.3 65 1-80 17-85 (94)
7 1wgm_A Ubiquitin conjugation f 99.2 1.6E-11 5.5E-16 92.6 4.9 59 1-80 32-91 (98)
8 2y43_A E3 ubiquitin-protein li 99.2 1.1E-11 3.6E-16 91.8 3.5 59 1-80 32-91 (99)
9 2c2l_A CHIP, carboxy terminus 99.1 1.6E-11 5.5E-16 103.7 3.6 58 1-78 218-275 (281)
10 3lrq_A E3 ubiquitin-protein li 99.1 1.7E-11 5.9E-16 91.6 3.2 61 1-81 32-93 (100)
11 1z6u_A NP95-like ring finger p 99.1 3.8E-11 1.3E-15 96.5 5.2 57 1-76 88-144 (150)
12 1jm7_A BRCA1, breast cancer ty 99.1 2.2E-11 7.5E-16 91.1 2.5 58 1-76 31-88 (112)
13 4ayc_A E3 ubiquitin-protein li 99.1 1.6E-11 5.3E-16 96.5 1.0 51 1-74 63-113 (138)
14 2ckl_A Polycomb group ring fin 99.0 1.3E-10 4.4E-15 87.3 3.9 57 1-76 25-84 (108)
15 2csy_A Zinc finger protein 183 99.0 1.6E-10 5.5E-15 82.5 4.2 53 1-78 25-77 (81)
16 2ecw_A Tripartite motif-contai 99.0 2.5E-11 8.5E-16 85.9 -0.4 54 1-69 29-82 (85)
17 3l11_A E3 ubiquitin-protein li 99.0 3.2E-11 1.1E-15 91.4 0.2 59 1-77 25-88 (115)
18 1jm7_B BARD1, BRCA1-associated 99.0 8.6E-11 2.9E-15 89.7 2.3 56 1-79 32-88 (117)
19 2f42_A STIP1 homology and U-bo 99.0 2.6E-10 9E-15 95.1 4.3 58 1-78 116-173 (179)
20 2egp_A Tripartite motif-contai 99.0 1E-11 3.6E-16 87.5 -4.3 54 1-68 22-75 (79)
21 2ckl_B Ubiquitin ligase protei 98.9 3.3E-10 1.1E-14 90.9 3.7 58 1-77 64-122 (165)
22 2ecv_A Tripartite motif-contai 98.9 3.8E-11 1.3E-15 84.9 -2.3 53 1-68 29-81 (85)
23 2yur_A Retinoblastoma-binding 98.9 1.1E-09 3.7E-14 77.3 3.1 38 1-55 25-63 (74)
24 2ysl_A Tripartite motif-contai 98.8 1.4E-09 4.6E-14 75.6 3.4 39 1-55 30-68 (73)
25 2ct2_A Tripartite motif protei 98.8 5E-10 1.7E-14 80.1 1.0 36 4-55 32-67 (88)
26 3hct_A TNF receptor-associated 98.8 8E-10 2.7E-14 84.5 1.9 58 1-78 28-85 (118)
27 2djb_A Polycomb group ring fin 98.8 2.6E-09 8.8E-14 74.7 3.8 36 1-55 25-61 (72)
28 3htk_C E3 SUMO-protein ligase 98.8 1.5E-09 5.2E-14 95.7 2.9 59 1-78 191-252 (267)
29 1rmd_A RAG1; V(D)J recombinati 98.8 3E-09 1E-13 80.6 3.5 56 1-76 33-89 (116)
30 2ecy_A TNF receptor-associated 98.8 3E-09 1E-13 73.1 2.5 37 1-55 25-61 (66)
31 2ysj_A Tripartite motif-contai 98.7 4E-09 1.4E-13 71.7 2.9 24 1-24 30-53 (63)
32 2d8t_A Dactylidin, ring finger 98.7 2.6E-09 9E-14 74.5 1.5 36 1-55 25-60 (71)
33 1g25_A CDK-activating kinase a 98.7 7.3E-09 2.5E-13 70.9 2.4 33 5-55 22-54 (65)
34 3ng2_A RNF4, snurf, ring finge 98.6 4.4E-09 1.5E-13 72.5 0.4 32 5-55 31-62 (71)
35 2ecj_A Tripartite motif-contai 98.6 1.2E-08 4E-13 67.7 2.5 24 1-24 25-48 (58)
36 3hcs_A TNF receptor-associated 98.6 9.2E-09 3.1E-13 82.7 1.9 55 1-75 28-82 (170)
37 1chc_A Equine herpes virus-1 r 98.6 1.7E-08 5.7E-13 69.3 2.2 36 1-55 15-51 (68)
38 2ea6_A Ring finger protein 4; 98.6 2E-08 6.7E-13 68.5 2.2 32 5-55 36-67 (69)
39 2kiz_A E3 ubiquitin-protein li 98.5 3.2E-08 1.1E-12 68.2 2.5 34 3-55 29-62 (69)
40 2ect_A Ring finger protein 126 98.5 3.1E-08 1.1E-12 69.7 2.3 32 5-55 32-63 (78)
41 3knv_A TNF receptor-associated 98.5 1.3E-08 4.3E-13 81.0 0.2 57 1-75 41-104 (141)
42 2xeu_A Ring finger protein 4; 98.5 4.5E-08 1.5E-12 65.7 2.5 33 4-55 23-55 (64)
43 2l0b_A E3 ubiquitin-protein li 98.5 5.1E-08 1.8E-12 71.4 2.6 33 4-55 56-88 (91)
44 2ecm_A Ring finger and CHY zin 98.5 4.1E-08 1.4E-12 64.5 1.6 33 4-55 22-54 (55)
45 1x4j_A Ring finger protein 38; 98.4 6.1E-08 2.1E-12 68.0 1.3 32 5-55 40-71 (75)
46 1iym_A EL5; ring-H2 finger, ub 98.4 8.5E-08 2.9E-12 63.1 1.6 32 4-54 21-53 (55)
47 1bor_A Transcription factor PM 98.4 2.7E-08 9.3E-13 66.9 -1.1 33 1-55 16-48 (56)
48 2ecn_A Ring finger protein 141 98.4 5.1E-08 1.8E-12 67.3 0.2 32 5-55 28-59 (70)
49 1e4u_A Transcriptional repress 98.4 1.4E-07 4.9E-12 68.2 2.4 34 4-55 26-61 (78)
50 2ep4_A Ring finger protein 24; 98.4 1.9E-07 6.6E-12 65.0 2.9 32 6-56 33-64 (74)
51 1v87_A Deltex protein 2; ring- 98.3 2.1E-07 7.2E-12 69.8 3.0 36 6-55 58-93 (114)
52 4ap4_A E3 ubiquitin ligase RNF 98.3 7.8E-08 2.7E-12 72.7 0.6 32 5-55 28-59 (133)
53 4ic3_A E3 ubiquitin-protein li 98.3 1.1E-07 3.8E-12 67.3 0.7 32 1-55 34-66 (74)
54 2ecg_A Baculoviral IAP repeat- 98.2 3.4E-07 1.2E-11 64.7 2.0 33 1-56 35-68 (75)
55 2vje_B MDM4 protein; proto-onc 98.1 7.2E-07 2.5E-11 61.5 1.5 35 2-55 18-55 (63)
56 2vje_A E3 ubiquitin-protein li 98.1 8.4E-07 2.9E-11 61.3 1.8 35 2-55 19-56 (64)
57 2yho_A E3 ubiquitin-protein li 98.1 2.4E-07 8.4E-12 66.8 -1.1 32 1-55 28-60 (79)
58 2ecl_A Ring-box protein 2; RNF 98.1 1.2E-06 4.1E-11 62.9 2.3 33 4-55 42-75 (81)
59 4ap4_A E3 ubiquitin ligase RNF 98.1 1.5E-06 5E-11 65.6 2.5 33 4-55 92-124 (133)
60 2ea5_A Cell growth regulator w 98.0 2E-06 6.7E-11 60.4 1.3 33 1-56 25-58 (68)
61 1wim_A KIAA0161 protein; ring 97.9 7.5E-07 2.6E-11 65.2 -1.3 35 8-53 25-61 (94)
62 3dpl_R Ring-box protein 1; ubi 97.9 6.2E-06 2.1E-10 62.9 2.9 32 5-55 69-100 (106)
63 2bay_A PRE-mRNA splicing facto 97.8 4.4E-06 1.5E-10 57.7 1.3 36 1-55 13-49 (61)
64 4a0k_B E3 ubiquitin-protein li 97.5 1.5E-05 5.1E-10 62.1 0.0 29 7-54 82-110 (117)
65 3vk6_A E3 ubiquitin-protein li 97.2 0.00016 5.3E-09 55.5 2.7 32 6-55 17-48 (101)
66 2d8s_A Cellular modulator of i 97.1 0.00014 4.8E-09 52.7 1.4 36 3-55 29-69 (80)
67 2ko5_A Ring finger protein Z; 93.1 0.025 8.4E-07 43.0 0.9 31 6-55 41-72 (99)
68 2ct0_A Non-SMC element 1 homol 92.5 0.084 2.9E-06 37.7 3.0 31 8-55 33-63 (74)
69 3i2d_A E3 SUMO-protein ligase 92.4 0.033 1.1E-06 51.1 0.9 28 43-72 287-314 (371)
70 3m62_A Ubiquitin conjugation f 92.3 0.079 2.7E-06 53.9 3.5 59 1-80 901-960 (968)
71 2jun_A Midline-1; B-BOX, TRIM, 92.1 0.037 1.3E-06 40.2 0.8 22 2-23 15-38 (101)
72 1vyx_A ORF K3, K3RING; zinc-bi 90.7 0.11 3.9E-06 35.2 2.0 36 3-55 18-58 (60)
73 4fo9_A E3 SUMO-protein ligase 78.6 1.3 4.5E-05 40.3 3.3 28 43-72 253-280 (360)
74 2o35_A Hypothetical protein DU 62.4 2.4 8.1E-05 32.4 0.9 15 12-26 42-56 (105)
75 3fyb_A Protein of unknown func 61.7 2.5 8.4E-05 32.3 0.9 14 12-25 41-54 (104)
76 2lbm_A Transcriptional regulat 52.9 6.2 0.00021 31.3 2.0 37 8-52 80-116 (142)
77 3mjh_B Early endosome antigen 30.6 23 0.00077 21.7 1.5 12 44-55 5-16 (34)
78 2pv0_B DNA (cytosine-5)-methyl 28.5 23 0.00078 32.5 1.8 50 8-66 112-161 (386)
79 3a1b_A DNA (cytosine-5)-methyl 26.5 27 0.00093 28.3 1.8 50 8-66 98-147 (159)
80 1weo_A Cellulose synthase, cat 25.5 66 0.0023 23.9 3.6 30 8-55 40-69 (93)
81 1z60_A TFIIH basal transcripti 23.9 23 0.0008 24.0 0.8 12 8-19 35-46 (59)
82 2jmo_A Parkin; IBR, E3 ligase, 23.9 9.9 0.00034 26.8 -1.2 14 8-21 55-68 (80)
83 1erd_A Pheromone ER-2; NMR {Eu 23.5 12 0.00042 23.3 -0.6 17 7-23 10-26 (40)
84 3ql9_A Transcriptional regulat 21.0 84 0.0029 24.4 3.6 37 8-52 74-110 (129)
85 2ct7_A Ring finger protein 31; 20.7 13 0.00045 26.3 -1.1 17 5-21 44-61 (86)
86 2gmg_A Hypothetical protein PF 20.2 17 0.00057 27.7 -0.6 11 44-54 84-94 (105)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=93.45 Aligned_cols=61 Identities=23% Similarity=0.572 Sum_probs=50.5
Q ss_pred CCCCeEcC-CCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcCC
Q 028419 1 MAQPVTTP-CAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKTE 79 (209)
Q Consensus 1 f~dPV~Lp-CGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~~ 79 (209)
|.+||+|+ |||+||..||..||.... .+.||.||..+.. ...+.+|+.|..+++.++....
T Consensus 23 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----------------~~~CP~Cr~~~~~-~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 23 MTDAVVIPCCGNSYCDECIRTALLESD-----------------EHTCPTCHQNDVS-PDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CSSCEECTTTCCEECHHHHHHHHHHCT-----------------TCCCTTTCCSSCC-TTSCEECHHHHHHHHHHHHHHT
T ss_pred hcCceECCCCCCHHHHHHHHHHHHhcC-----------------CCcCcCCCCcCCC-ccccCcCHHHHHHHHHHHHHHh
Confidence 67899999 999999999999997432 3589999998632 4578899999999999987543
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.27 E-value=1.7e-12 Score=91.87 Aligned_cols=58 Identities=16% Similarity=0.254 Sum_probs=49.4
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcC
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKT 78 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~ 78 (209)
|.+||+++|||+||+.||..|+... ...||.||..+. ...+.+|..|..+|..|+..+
T Consensus 18 ~~~Pv~~~CgH~fc~~Ci~~~~~~~------------------~~~CP~C~~~~~--~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 18 MKDPVIVSTGQTYERSSIQKWLDAG------------------HKTCPKSQETLL--HAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp CSSEEEETTTEEEEHHHHHHHHTTT------------------CCBCTTTCCBCS--SCCCEECTTTHHHHHHHHHHS
T ss_pred ccCCEEcCCCCeecHHHHHHHHHHC------------------cCCCCCCcCCCC--hhhCccCHHHHHHHHHHHHHc
Confidence 6789999999999999999999732 358999999887 457788999999999987654
No 3
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.23 E-value=6.5e-12 Score=95.06 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcCC
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKTE 79 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~~ 79 (209)
|.+||+++|||+||+.||..||... .+||.|+..+. ...+.+|..|..+|..+...+.
T Consensus 39 m~dPV~~~cGhtf~r~~I~~~l~~~-------------------~~cP~~~~~l~--~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 39 MTDPVRLPSGTIMDRSIILRHLLNS-------------------PTDPFNRQTLT--ESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSSEEEETTTEEEEHHHHHHHTTSC-------------------SBCSSSCCBCC--TTSSEECHHHHHHHHHHHHTTT
T ss_pred ccCCeECCCCCEEchHHHHHHHHcC-------------------CCCCCCCCCCC--hhhceECHHHHHHHHHHHHHhh
Confidence 6799999999999999999999732 48999999987 4688999999999999987654
No 4
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.22 E-value=9.2e-12 Score=95.76 Aligned_cols=58 Identities=36% Similarity=0.777 Sum_probs=48.4
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhc
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQK 77 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~ 77 (209)
|.+||+|+|||+||..||..||... ...||.||..+.. ...+.+|+.|..++..+...
T Consensus 62 ~~~p~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~-~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 62 VFRPITTVCQHNVCKDCLDRSFRAQ------------------VFSCPACRYDLGR-SYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHTT------------------CCBCTTTCCBCCT-TCCCCCCHHHHHHHHHHSTT
T ss_pred HcCcEEeeCCCcccHHHHHHHHhHC------------------cCCCCCCCccCCC-CCCCCCCHHHHHHHHHHccc
Confidence 5789999999999999999999733 3589999999873 25688999999999887643
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.22 E-value=6.4e-12 Score=92.04 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=49.7
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcC
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKT 78 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~ 78 (209)
|.+||+++|||+||+.||..||... .+||.|+..+. ...+.+|..|.++|..+...+
T Consensus 24 m~dPV~~~cGhtf~r~~I~~~l~~~-------------------~~cP~~~~~l~--~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 24 MTDPVRLPSGTVMDRSIILRHLLNS-------------------PTDPFNRQMLT--ESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHC-------------------SBCTTTCCBCC--GGGCEECHHHHHHHHHHHHHH
T ss_pred hcCCeECCCCCEECHHHHHHHHhcC-------------------CCCCCCcCCCC--hHhcchHHHHHHHHHHHHHHh
Confidence 6899999999999999999999833 48999999987 467899999999999987643
No 6
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=7e-12 Score=93.17 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=51.4
Q ss_pred CCCCeEcC-CCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCC--Cccc-cccCcCCCcccHHHHHHHHHHHh
Q 028419 1 MAQPVTTP-CAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPS--CTTD-ISDFLKDPQVNRELMEVIESLKQ 76 (209)
Q Consensus 1 f~dPV~Lp-CGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~--CR~~-i~~~~~~~~~N~~L~~Lve~lk~ 76 (209)
|.+||+++ |||+||+.||..||.... .....++||. |+.. +. ...+.+|..|..+|..++.
T Consensus 17 ~~dPV~~~~cGh~f~r~cI~~~l~~~~-------------~~~~~~~CP~tgc~~~~l~--~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 17 MKKPVKNKVCGHTYEEDAIVRMIESRQ-------------KRKKKAYCPQIGCSHTDIR--KSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSEEEESSSCCEEEHHHHHHHHHHHH-------------TTTCCBCCCSTTCCCCCBC--GGGEEECHHHHHHHHHHHT
T ss_pred hcCCEEcCCCCCeecHHHHHHHHHHcc-------------CcCCCCCCCcCcCcccccC--HhhCcCCHHHHHHHHHHHH
Confidence 68999996 999999999999997431 0012468999 9876 55 4678899999999999987
Q ss_pred cCCc
Q 028419 77 KTEE 80 (209)
Q Consensus 77 ~~~~ 80 (209)
....
T Consensus 82 ~~~r 85 (94)
T 2yu4_A 82 KRHR 85 (94)
T ss_dssp TCCS
T ss_pred Hhcc
Confidence 6653
No 7
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.18 E-value=1.6e-11 Score=92.56 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=51.4
Q ss_pred CCCCeEcCCC-ChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcCC
Q 028419 1 MAQPVTTPCA-HNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKTE 79 (209)
Q Consensus 1 f~dPV~LpCG-H~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~~ 79 (209)
|.+||+++|| |+||+.||..||... .+||.|+..+. ...+.+|..|.++|..+...+.
T Consensus 32 m~dPV~~~cG~htf~r~cI~~~l~~~-------------------~~cP~~~~~l~--~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 32 MCDPVVLPSSRVTVDRSTIARHLLSD-------------------QTDPFNRSPLT--MDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHTTTS-------------------CBCTTTCSBCC--TTTSEECHHHHHHHHHHHHHST
T ss_pred ccCCeECCCCCeEECHHHHHHHHHhC-------------------CCCCCCCCCCC--hhhceEcHHHHHHHHHHHHHcc
Confidence 6899999999 999999999999743 38999999987 4688999999999999987654
Q ss_pred c
Q 028419 80 E 80 (209)
Q Consensus 80 ~ 80 (209)
.
T Consensus 91 ~ 91 (98)
T 1wgm_A 91 Q 91 (98)
T ss_dssp T
T ss_pred h
Confidence 3
No 8
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=91.81 Aligned_cols=59 Identities=29% Similarity=0.627 Sum_probs=49.8
Q ss_pred CCCCeEc-CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcCC
Q 028419 1 MAQPVTT-PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKTE 79 (209)
Q Consensus 1 f~dPV~L-pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~~ 79 (209)
|.+|+++ +|||+||..||..|+... ..||.||..+. ...+..|+.|.++++.++....
T Consensus 32 ~~~p~~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~--~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 32 FNIAMIIPQCSHNYCSLCIRKFLSYK-------------------TQCPTCCVTVT--EPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHTTC-------------------CBCTTTCCBCC--GGGCEECHHHHHHHHHHHHHHH
T ss_pred hCCcCEECCCCCHhhHHHHHHHHHCC-------------------CCCCCCCCcCC--hhhCCcCHHHHHHHHHHHHHHH
Confidence 5689988 899999999999999743 38999999887 4668889999999999987654
Q ss_pred c
Q 028419 80 E 80 (209)
Q Consensus 80 ~ 80 (209)
.
T Consensus 91 ~ 91 (99)
T 2y43_A 91 H 91 (99)
T ss_dssp T
T ss_pred H
Confidence 4
No 9
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.14 E-value=1.6e-11 Score=103.65 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=50.3
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcC
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKT 78 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~ 78 (209)
|.+||+++|||+||+.||..||.... ..||.|+.++. ...+.+|..|..+|..+...+
T Consensus 218 ~~dPv~~~~gh~f~~~~i~~~~~~~~------------------~~cP~~~~~~~--~~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 218 MREPCITPSGITYDRKDIEEHLQRVG------------------HFNPVTRSPLT--QEQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp CSSEEECSSCCEEETTHHHHHHHHTC------------------SSCTTTCCCCC--GGGCEECHHHHHHHHHHHTTC
T ss_pred hcCCeECCCCCEECHHHHHHHHHHCC------------------CCCcCCCCCCc--hhcCcccHHHHHHHHHHHHHC
Confidence 68999999999999999999997432 24999999987 467889999999999998765
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.13 E-value=1.7e-11 Score=91.55 Aligned_cols=61 Identities=20% Similarity=0.397 Sum_probs=48.5
Q ss_pred CCCCeE-cCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcCC
Q 028419 1 MAQPVT-TPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKTE 79 (209)
Q Consensus 1 f~dPV~-LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~~ 79 (209)
|.+||+ ++|||+||..||..|+.... ..||.||..+. ...+..|+.+..++..+...+.
T Consensus 32 ~~~p~~~~~CgH~FC~~Ci~~~~~~~~------------------~~CP~Cr~~~~--~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 32 LRDARLCPHCSKLCCFSCIRRWLTEQR------------------AQCPHCRAPLQ--LRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHHHTC------------------SBCTTTCCBCC--GGGCEECTTHHHHHHHHHHHCC
T ss_pred ccCccccCCCCChhhHHHHHHHHHHCc------------------CCCCCCCCcCC--HHHhHhhHHHHHHHHHHHHHHH
Confidence 578999 99999999999999998542 47999999987 4667777778888887777655
Q ss_pred cc
Q 028419 80 ED 81 (209)
Q Consensus 80 ~~ 81 (209)
..
T Consensus 92 ~~ 93 (100)
T 3lrq_A 92 CS 93 (100)
T ss_dssp --
T ss_pred HH
Confidence 43
No 11
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.13 E-value=3.8e-11 Score=96.49 Aligned_cols=57 Identities=33% Similarity=0.688 Sum_probs=48.1
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHh
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQ 76 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~ 76 (209)
|.+||+|+|||+||..||..|+... .+.||.||..+.. ...+..|+.|.+++..|..
T Consensus 88 ~~~pv~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~-~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 88 VYQPVTTECFHNVCKDCLQRSFKAQ------------------VFSCPACRHDLGQ-NYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHTT------------------CCBCTTTCCBCCT-TCCCCBCHHHHHHHHHHST
T ss_pred hcCCEEcCCCCchhHHHHHHHHHhC------------------CCcCCCCCccCCC-CCCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999743 3579999999873 1277899999999998864
No 12
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=2.2e-11 Score=91.09 Aligned_cols=58 Identities=31% Similarity=0.684 Sum_probs=43.0
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHh
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQ 76 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~ 76 (209)
|.+|++++|||+||..||..|+.... +.+.||.||..+. ...+..|..+..+++.++.
T Consensus 31 ~~~p~~~~CgH~fC~~Ci~~~~~~~~----------------~~~~CP~Cr~~~~--~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 31 IKEPVSTKCDHIFCKFCMLKLLNQKK----------------GPSQCPLCKNDIT--KRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp CSSCCBCTTSCCCCSHHHHHHHHSSS----------------SSCCCTTTSCCCC--TTTCBCCCSSSHHHHHHHH
T ss_pred hcCeEECCCCCHHHHHHHHHHHHhCC----------------CCCCCcCCCCcCC--HhhcCccHHHHHHHHHHHH
Confidence 56899999999999999999998543 3468999999887 3455555555555555543
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.08 E-value=1.6e-11 Score=96.55 Aligned_cols=51 Identities=33% Similarity=0.716 Sum_probs=38.4
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHH
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESL 74 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~l 74 (209)
|.+||+|+|||+||..||..|+... ..||.||..+.. ..++..+..++..+
T Consensus 63 ~~~~~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~~----~~~~~~~~~~i~~~ 113 (138)
T 4ayc_A 63 FIEAVTLNCAHSFCSYCINEWMKRK-------------------IECPICRKDIKS----KTYSLVLDNCINKM 113 (138)
T ss_dssp CSSEEEETTSCEEEHHHHHHHTTTC-------------------SBCTTTCCBCCC----EEECHHHHHHHHHH
T ss_pred cCCceECCCCCCccHHHHHHHHHcC-------------------CcCCCCCCcCCC----CCCccchhHHHHHH
Confidence 5789999999999999999998744 379999998762 23345555555444
No 14
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.03 E-value=1.3e-10 Score=87.30 Aligned_cols=57 Identities=23% Similarity=0.592 Sum_probs=46.0
Q ss_pred CCCCeEc-CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccC--cCCCcccHHHHHHHHHHHh
Q 028419 1 MAQPVTT-PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDF--LKDPQVNRELMEVIESLKQ 76 (209)
Q Consensus 1 f~dPV~L-pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~--~~~~~~N~~L~~Lve~lk~ 76 (209)
|.+||++ +|||+||..||..|+... ..||.||..+... ...+..|..|.+++..+..
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 25 FIDATTIIECLHSFCKTCIVRYLETS-------------------KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp CSSEEEETTTCCEEEHHHHHHHHTSC-------------------SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred HhCcCEeCCCCChhhHHHHHHHHHhC-------------------CcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 5689998 999999999999999743 4899999988621 1256788999999988755
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=82.47 Aligned_cols=53 Identities=28% Similarity=0.593 Sum_probs=40.4
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcC
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKT 78 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~ 78 (209)
|.+||+++|||+||..||..|+... ..||.||..+. ..+..|. .|+..++...
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~---~~~~~~~---~l~~~~~~~~ 77 (81)
T 2csy_A 25 FQNPVVTKCRHYFCESCALEHFRAT-------------------PRCYICDQPTG---GIFNPAK---ELMAKLQKSG 77 (81)
T ss_dssp CCSEEECTTSCEEEHHHHHHHHHHC-------------------SBCSSSCCBCC---SCCEECH---HHHHHHSSSC
T ss_pred hcCeeEccCCCHhHHHHHHHHHHCC-------------------CcCCCcCcccc---ccCCcHH---HHHHHHHhhC
Confidence 5789999999999999999999743 38999999875 4455664 4555555544
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.02 E-value=2.5e-11 Score=85.90 Aligned_cols=54 Identities=20% Similarity=0.634 Sum_probs=39.8
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHH
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELME 69 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~ 69 (209)
|.+|++++|||+||..||..|+.... .......||.||..+. ...+..|+.|.+
T Consensus 29 ~~~p~~~~CgH~fC~~Ci~~~~~~~~-------------~~~~~~~CP~Cr~~~~--~~~~~~n~~l~~ 82 (85)
T 2ecw_A 29 LKEPVSADCNHSFCRACITLNYESNR-------------NTDGKGNCPVCRVPYP--FGNLKPNLHVAN 82 (85)
T ss_dssp CSSCEECTTSCCBCHHHHHHHHHHSB-------------CTTSCBCCTTTCCCCC--TTCCEECSCCCS
T ss_pred hCcceeCCCCCHHHHHHHHHHHHhcc-------------CCCCCCCCCCCCCcCC--HHhCCcCHHHHH
Confidence 56899999999999999999998532 0113568999999887 345556654433
No 17
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=3.2e-11 Score=91.41 Aligned_cols=59 Identities=31% Similarity=0.698 Sum_probs=46.5
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCcccccc-----CcCCCcccHHHHHHHHHHH
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISD-----FLKDPQVNRELMEVIESLK 75 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~-----~~~~~~~N~~L~~Lve~lk 75 (209)
|.+||+|+|||+||..||..|+... ...||.||..+.. ....+.+|..|..++..+.
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 25 LVEPVTLPCNHTLCKPCFQSTVEKA------------------SLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CSSCEECTTSCEECHHHHCCCCCTT------------------TSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred cCceeEcCCCCHHhHHHHHHHHhHC------------------cCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 5789999999999999999887532 3589999998852 2356678888888887775
Q ss_pred hc
Q 028419 76 QK 77 (209)
Q Consensus 76 ~~ 77 (209)
..
T Consensus 87 p~ 88 (115)
T 3l11_A 87 PR 88 (115)
T ss_dssp HH
T ss_pred CH
Confidence 43
No 18
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=8.6e-11 Score=89.74 Aligned_cols=56 Identities=29% Similarity=0.679 Sum_probs=48.1
Q ss_pred CCCCeEc-CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcCC
Q 028419 1 MAQPVTT-PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKTE 79 (209)
Q Consensus 1 f~dPV~L-pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~~ 79 (209)
|.+||++ +|||+||..||..|+. ..||.||..+. ...+..|+.|..++..++....
T Consensus 32 ~~~pv~~~~CgH~fC~~Ci~~~~~---------------------~~CP~Cr~~~~--~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 32 LREPVCLGGCEHIFCSNCVSDCIG---------------------TGCPVCYTPAW--IQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp CSSCBCCCSSSCCBCTTTGGGGTT---------------------TBCSSSCCBCS--CSSCCCCHHHHHHHHHHHHHHH
T ss_pred hhCccEeCCCCCHHHHHHHHHHhc---------------------CCCcCCCCcCc--cccccccHHHHHHHHHHHHHHH
Confidence 5789999 9999999999998875 26999999986 5678899999999998877653
No 19
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.98 E-value=2.6e-10 Score=95.13 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=50.2
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcC
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKT 78 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~ 78 (209)
|.+||+++|||+||+.||..||.... . +||.|+.++. ...+.+|..|..+|..+...+
T Consensus 116 m~DPV~~~~Ghtfer~~I~~~l~~~~-----------------~-tcP~t~~~l~--~~~L~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 116 MREPCITPSGITYDRKDIEEHLQRVG-----------------H-FDPVTRSPLT--QDQLIPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHTC-----------------S-BCTTTCCBCC--GGGCEECHHHHHHHHHHHHHC
T ss_pred CCCCeECCCCCEECHHHHHHHHHhCC-----------------C-CCCCCcCCCC--hhhCcchHHHHHHHHHHHHHC
Confidence 68999999999999999999997432 2 6999999887 467899999999999997654
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.95 E-value=1e-11 Score=87.50 Aligned_cols=54 Identities=24% Similarity=0.598 Sum_probs=38.7
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHH
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELM 68 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~ 68 (209)
|.+|++|+|||+||..||..|+.... ........||.||..+. ...+..|+.|.
T Consensus 22 ~~~p~~l~CgH~fC~~Ci~~~~~~~~------------~~~~~~~~CP~Cr~~~~--~~~l~~n~~l~ 75 (79)
T 2egp_A 22 LTEPLSLDCGHSLCRACITVSNKEAV------------TSMGGKSSCPVCGISYS--FEHLQANQHLA 75 (79)
T ss_dssp CSSCCCCSSSCCCCHHHHSCCCCCCS------------SSCCCCCCCSSSCCCCC--SSGGGTCSSSC
T ss_pred cCCeeECCCCCHHHHHHHHHHHHhcc------------cCCCCCCcCCCCCCcCC--HhhCCcCHHHH
Confidence 57899999999999999999887531 00113568999999886 34455555443
No 21
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=3.3e-10 Score=90.91 Aligned_cols=58 Identities=21% Similarity=0.562 Sum_probs=46.4
Q ss_pred CCCCeEc-CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhc
Q 028419 1 MAQPVTT-PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQK 77 (209)
Q Consensus 1 f~dPV~L-pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~ 77 (209)
|.+||++ +|||+||..||..|+... ...||.||..+.. ...+.+|+.|..+|..+...
T Consensus 64 ~~~p~~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~-~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 64 LKNTMTTKECLHRFCADCIITALRSG------------------NKECPTCRKKLVS-KRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CSSEEEETTTCCEEEHHHHHHHHHTT------------------CCBCTTTCCBCCS-GGGEEECHHHHHHHHHHC--
T ss_pred hhCcCEeCCCCChhHHHHHHHHHHhC------------------cCCCCCCCCcCCC-cccCCcCHHHHHHHHHHHcc
Confidence 5689987 999999999999999742 2479999998852 34578899999999888653
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.8e-11 Score=84.95 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=38.8
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHH
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELM 68 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~ 68 (209)
|.+|++++|||+||..|+..|+.... .......||.||..+. ...+..|+.|.
T Consensus 29 ~~~p~~~~CgH~fC~~Ci~~~~~~~~-------------~~~~~~~CP~Cr~~~~--~~~~~~n~~l~ 81 (85)
T 2ecv_A 29 LTQPLSLDCGHSFCQACLTANHKKSM-------------LDKGESSCPVCRISYQ--PENIRPNRHVA 81 (85)
T ss_dssp CSSCBCCSSSCCBCTTHHHHHHHHHH-------------HTTSCCCCTTTCCSSC--SSSCCCSCCCC
T ss_pred cCCceeCCCCCHHHHHHHHHHHHHhh-------------cCCCCCcCCCCCCccC--HHhcCccHHHH
Confidence 56899999999999999999987521 0012468999999887 34555665443
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=77.28 Aligned_cols=38 Identities=26% Similarity=0.788 Sum_probs=32.1
Q ss_pred CCCCeEcC-CCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQPVTTP-CAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dPV~Lp-CGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|.+||+|+ |||+||..||..|+.... ...||.||..+.
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----------------~~~CP~Cr~~~~ 63 (74)
T 2yur_A 25 MTDAVVIPCCGNSYCDECIRTALLESD-----------------EHTCPTCHQNDV 63 (74)
T ss_dssp CTTCEECSSSCCEECTTHHHHHHHHSS-----------------SSCCSSSCCSSC
T ss_pred HhCCeEcCCCCCHHHHHHHHHHHHhcC-----------------CCcCCCCCCcCC
Confidence 67899999 999999999999997432 358999999754
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=75.61 Aligned_cols=39 Identities=36% Similarity=0.880 Sum_probs=32.3
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|.+|++++|||.||..||..|+.... ....||.||..+.
T Consensus 30 ~~~~~~~~CgH~fC~~Ci~~~~~~~~----------------~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 30 LQKPVTIDCGHNFCLKCITQIGETSC----------------GFFKCPLCKTSVR 68 (73)
T ss_dssp CSSEEECTTCCEEEHHHHHHHCSSSC----------------SCCCCSSSCCCCC
T ss_pred cCCeEEcCCCChhhHHHHHHHHHcCC----------------CCCCCCCCCCcCC
Confidence 56899999999999999999986322 2468999999876
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=5e-10 Score=80.09 Aligned_cols=36 Identities=28% Similarity=0.760 Sum_probs=30.8
Q ss_pred CeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 4 PV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|++++|||.||..||..|+.... ....||.||..+.
T Consensus 32 ~~~~~CgH~fC~~Ci~~~~~~~~----------------~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 32 PKLLHCGHTICRQCLEKLLASSI----------------NGVRCPFCSKITR 67 (88)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCS----------------SCBCCTTTCCCBC
T ss_pred eEECCCCChhhHHHHHHHHHcCC----------------CCcCCCCCCCccc
Confidence 89999999999999999997542 2468999999876
No 26
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.83 E-value=8e-10 Score=84.45 Aligned_cols=58 Identities=28% Similarity=0.470 Sum_probs=45.4
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcC
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKT 78 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~ 78 (209)
|.+||+++|||+||..||..|+.... ..||.||..+. ...+..+..+..+|..++-.-
T Consensus 28 ~~~p~~~~CgH~fC~~Ci~~~~~~~~------------------~~CP~Cr~~~~--~~~~~~~~~l~~~i~~l~v~C 85 (118)
T 3hct_A 28 LREAVQTPCGHRFCKACIIKSIRDAG------------------HKCPVDNEILL--ENQLFPDNFAKREILSLMVKC 85 (118)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHHC------------------SBCTTTCCBCC--GGGCEECHHHHHHHHTSEEEC
T ss_pred hcCeEECCcCChhhHHHHHHHHhhCC------------------CCCCCCCCCcC--HHhcccCHHHHHHHccceeEC
Confidence 56899999999999999999987432 37999999887 355667777777777655433
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=74.71 Aligned_cols=36 Identities=33% Similarity=0.829 Sum_probs=31.2
Q ss_pred CCCCeEc-CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQPVTT-PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dPV~L-pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|.+|+++ +|||.||..||..|+... ..||.||..+.
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 61 (72)
T 2djb_A 25 LIDATTITECLHTFCKSCIVRHFYYS-------------------NRCPKCNIVVH 61 (72)
T ss_dssp CSSCEECSSSCCEECHHHHHHHHHHC-------------------SSCTTTCCCCC
T ss_pred HHCcCEECCCCCHHHHHHHHHHHHcC-------------------CcCCCcCcccC
Confidence 5679997 999999999999999743 38999999886
No 28
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.5e-09 Score=95.75 Aligned_cols=59 Identities=22% Similarity=0.422 Sum_probs=49.7
Q ss_pred CCCCeEc-CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCC--CccccccCcCCCcccHHHHHHHHHHHhc
Q 028419 1 MAQPVTT-PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPS--CTTDISDFLKDPQVNRELMEVIESLKQK 77 (209)
Q Consensus 1 f~dPV~L-pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~--CR~~i~~~~~~~~~N~~L~~Lve~lk~~ 77 (209)
|.+||++ .|||+||+.||..||... +.+.||+ |+..+. ...+.+|..|..+++.++..
T Consensus 191 f~DPVts~~CGHsFcR~cI~~~~~~~-----------------~~~~CPvtGCr~~l~--~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 191 YEAPLISRKCNHVFDRDGIQNYLQGY-----------------TTRDCPQAACSQVVS--MRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp CSSEEEESSSCCEEEHHHHHHHSTTC-----------------SCEECSGGGCSCEEC--GGGEEECHHHHHHHHHHHHH
T ss_pred ccCCeeeCCCCCcccHHHHHHHHHhC-----------------CCCCCCcccccCcCc--hhhCCcCHHHHHHHHHHHHH
Confidence 7899985 999999999999999743 2468999 999887 57889999999999887664
Q ss_pred C
Q 028419 78 T 78 (209)
Q Consensus 78 ~ 78 (209)
.
T Consensus 252 ~ 252 (267)
T 3htk_C 252 E 252 (267)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.78 E-value=3e-09 Score=80.62 Aligned_cols=56 Identities=29% Similarity=0.613 Sum_probs=41.5
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCC-cccHHHHHHHHHHHh
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDP-QVNRELMEVIESLKQ 76 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~-~~N~~L~~Lve~lk~ 76 (209)
|.+||+++|||+||..||..|+.... ..||.||..+.. ..+ ..+..+..++..++-
T Consensus 33 ~~~p~~~~CgH~fC~~Ci~~~~~~~~------------------~~CP~Cr~~~~~--~~~~~~~~~l~~~i~~l~v 89 (116)
T 1rmd_A 33 LADPVETSCKHLFCRICILRCLKVMG------------------SYCPSCRYPCFP--TDLESPVKSFLNILNSLMV 89 (116)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHTC------------------SBCTTTCCBCCG--GGCBCCCHHHHHHHHHCEE
T ss_pred hcCcEEcCCCCcccHHHHHHHHhHCc------------------CcCCCCCCCCCH--hhccccHHHHHHHHHHhcC
Confidence 56899999999999999999997432 379999998862 232 345566666655543
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3e-09 Score=73.07 Aligned_cols=37 Identities=35% Similarity=0.864 Sum_probs=31.1
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|.+|++++|||.||..||..|+... ...||.||..+.
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 25 LCSPKQTECGHRFCESCMAALLSSS------------------SPKCTACQESIV 61 (66)
T ss_dssp ESSCCCCSSSCCCCHHHHHHHHTTS------------------SCCCTTTCCCCC
T ss_pred hcCeeECCCCCHHHHHHHHHHHHhC------------------cCCCCCCCcCCC
Confidence 4679999999999999999999522 347999999876
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=4e-09 Score=71.68 Aligned_cols=24 Identities=38% Similarity=0.883 Sum_probs=22.0
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhc
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSG 24 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~ 24 (209)
|.+|++|+|||+||..||..|+..
T Consensus 30 ~~~p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 30 LQKPVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp CSSCEECTTSSEECHHHHHHHHHH
T ss_pred hCCeEEeCCCCcchHHHHHHHHHc
Confidence 568999999999999999999974
No 32
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=2.6e-09 Score=74.46 Aligned_cols=36 Identities=33% Similarity=0.762 Sum_probs=30.8
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|.+|++++|||.||..||..|+... ..||+||..+.
T Consensus 25 ~~~~~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 60 (71)
T 2d8t_A 25 CVHPVSLPCKHVFCYLCVKGASWLG-------------------KRCALCRQEIP 60 (71)
T ss_dssp CSSEEEETTTEEEEHHHHHHCTTCS-------------------SBCSSSCCBCC
T ss_pred cCCCEEccCCCHHHHHHHHHHHHCC-------------------CcCcCcCchhC
Confidence 5689999999999999999987633 38999999775
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=7.3e-09 Score=70.88 Aligned_cols=33 Identities=30% Similarity=0.830 Sum_probs=27.9
Q ss_pred eEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 5 VTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 5 V~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++++|||+||..||..||... ...||.||..+.
T Consensus 22 ~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~ 54 (65)
T 1g25_A 22 MVNVCGHTLCESCVDLLFVRG------------------AGNCPECGTPLR 54 (65)
T ss_dssp EECTTCCCEEHHHHHHHHHTT------------------SSSCTTTCCCCS
T ss_pred ecCCCCCHhHHHHHHHHHHcC------------------CCcCCCCCCccc
Confidence 578999999999999998633 247999999886
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.63 E-value=4.4e-09 Score=72.48 Aligned_cols=32 Identities=38% Similarity=1.026 Sum_probs=28.3
Q ss_pred eEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 5 VTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 5 V~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++++|||.||..||..|+... ..||.||..+.
T Consensus 31 ~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 62 (71)
T 3ng2_A 31 VSTECGHVFCSQCLRDSLKNA-------------------NTCPTCRKKIN 62 (71)
T ss_dssp EECTTSCEEEHHHHHHHHHHC-------------------SBCTTTCCBCC
T ss_pred EeCCCCChHhHHHHHHHHHcC-------------------CCCCCCCCccC
Confidence 789999999999999999744 38999999886
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.2e-08 Score=67.66 Aligned_cols=24 Identities=38% Similarity=1.012 Sum_probs=21.6
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhc
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSG 24 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~ 24 (209)
|.+|++|+|||.||..||..|+..
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~ 48 (58)
T 2ecj_A 25 LKEPVIIECGHNFCKACITRWWED 48 (58)
T ss_dssp CSSCCCCSSCCCCCHHHHHHHTTS
T ss_pred cCccEeCCCCCccCHHHHHHHHHh
Confidence 568999999999999999999764
No 36
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.61 E-value=9.2e-09 Score=82.69 Aligned_cols=55 Identities=27% Similarity=0.488 Sum_probs=42.8
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHH
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLK 75 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk 75 (209)
|.+||+++|||+||..||..|+.... ..||.||..+. ...+..+..+..+|..++
T Consensus 28 ~~~pv~~~CgH~fC~~Ci~~~~~~~~------------------~~CP~Cr~~~~--~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 28 LREAVQTPCGHRFCKACIIKSIRDAG------------------HKCPVDNEILL--ENQLFPDNFAKREILSLM 82 (170)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHHC------------------SBCTTTCCBCC--GGGCEECHHHHHHHHTSE
T ss_pred hcCcEECCCCCHHHHHHHHHHHHhCC------------------CCCCCCccCcc--hhhhhhhHHHHHHHhhcc
Confidence 57899999999999999999987432 37999999887 344566767767666544
No 37
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.58 E-value=1.7e-08 Score=69.25 Aligned_cols=36 Identities=25% Similarity=0.710 Sum_probs=29.7
Q ss_pred CCCC-eEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQP-VTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dP-V~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|.+| +.++|||.||..|+..|+... ..||.||..+.
T Consensus 15 ~~~~~~~~~C~H~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 51 (68)
T 1chc_A 15 PSNYSMALPCLHAFCYVCITRWIRQN-------------------PTCPLCKVPVE 51 (68)
T ss_dssp CCSCEEETTTTEEESTTHHHHHHHHS-------------------CSTTTTCCCCC
T ss_pred ccCCcEecCCCCeeHHHHHHHHHhCc-------------------CcCcCCChhhH
Confidence 3455 778999999999999998643 38999999876
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2e-08 Score=68.49 Aligned_cols=32 Identities=38% Similarity=1.026 Sum_probs=27.8
Q ss_pred eEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 5 VTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 5 V~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++++|||.||..||..|+... ..||.||..+.
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 67 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLKNA-------------------NTCPTCRKKIN 67 (69)
T ss_dssp EECSSSCEEEHHHHHHHHHHC-------------------SSCTTTCCCCC
T ss_pred EeCCCCChhcHHHHHHHHHcC-------------------CCCCCCCCccC
Confidence 789999999999999999743 37999999764
No 39
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.53 E-value=3.2e-08 Score=68.16 Aligned_cols=34 Identities=32% Similarity=0.765 Sum_probs=29.0
Q ss_pred CCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 3 QPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 3 dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
.+++++|||.||..||..|+.... .||.||..+.
T Consensus 29 ~~~~~~C~H~fc~~Ci~~~~~~~~-------------------~CP~Cr~~~~ 62 (69)
T 2kiz_A 29 DVRRLPCMHLFHQVCVDQWLITNK-------------------KCPICRVDIE 62 (69)
T ss_dssp CEEECTTSCEEEHHHHHHHHHHCS-------------------BCTTTCSBSC
T ss_pred cEEEeCCCCHHHHHHHHHHHHcCC-------------------CCcCcCcccc
Confidence 457799999999999999997543 6999999876
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.52 E-value=3.1e-08 Score=69.74 Aligned_cols=32 Identities=28% Similarity=0.713 Sum_probs=27.5
Q ss_pred eEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 5 VTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 5 V~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++++|||.||..||..|+... ..||.||..+.
T Consensus 32 ~~~~C~H~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 63 (78)
T 2ect_A 32 RQLPCNHLFHDSCIVPWLEQH-------------------DSCPVCRKSLT 63 (78)
T ss_dssp EECTTSCEEETTTTHHHHTTT-------------------CSCTTTCCCCC
T ss_pred EEeCCCCeecHHHHHHHHHcC-------------------CcCcCcCCccC
Confidence 457999999999999998643 38999999886
No 41
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.51 E-value=1.3e-08 Score=81.03 Aligned_cols=57 Identities=21% Similarity=0.458 Sum_probs=39.9
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccC-------cCCCcccHHHHHHHHH
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDF-------LKDPQVNRELMEVIES 73 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~-------~~~~~~N~~L~~Lve~ 73 (209)
|.+||+++|||+||..||..|+... ...||.||..+..- ...+..+..+..+|..
T Consensus 41 ~~~pv~~~CgH~FC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 41 LRRPFQAQCGHRYCSFCLASILSSG------------------PQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp CSSEEECTTSCEEEHHHHHHHGGGS------------------CEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred hcCcEECCCCCccCHHHHHHHHhcC------------------CCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 5789999999999999999998633 24899999975310 1123355566666654
Q ss_pred HH
Q 028419 74 LK 75 (209)
Q Consensus 74 lk 75 (209)
+.
T Consensus 103 L~ 104 (141)
T 3knv_A 103 LP 104 (141)
T ss_dssp SE
T ss_pred cc
Confidence 43
No 42
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.49 E-value=4.5e-08 Score=65.74 Aligned_cols=33 Identities=36% Similarity=0.969 Sum_probs=28.5
Q ss_pred CeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 4 PV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++.++|||.||..|+..|+... ..||.||..+.
T Consensus 23 ~~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 55 (64)
T 2xeu_A 23 IVSTECGHVFCSQCLRDSLKNA-------------------NTCPTCRKKIN 55 (64)
T ss_dssp EEEETTSCEEEHHHHHHHHHHC-------------------SBCTTTCCBCT
T ss_pred EEeCCCCCchhHHHHHHHHHcC-------------------CCCCCCCccCC
Confidence 3789999999999999998743 38999999876
No 43
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.48 E-value=5.1e-08 Score=71.39 Aligned_cols=33 Identities=27% Similarity=0.641 Sum_probs=28.2
Q ss_pred CeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 4 PV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
+++++|||.||..||..|+... ..||.||..+.
T Consensus 56 ~~~l~C~H~Fh~~Ci~~wl~~~-------------------~~CP~Cr~~~~ 88 (91)
T 2l0b_A 56 ATELPCHHYFHKPCVSIWLQKS-------------------GTCPVCRCMFP 88 (91)
T ss_dssp EEEETTTEEEEHHHHHHHHTTT-------------------CBCTTTCCBSS
T ss_pred EEecCCCChHHHHHHHHHHHcC-------------------CcCcCcCccCC
Confidence 6679999999999999998743 38999999765
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.46 E-value=4.1e-08 Score=64.50 Aligned_cols=33 Identities=30% Similarity=0.745 Sum_probs=28.1
Q ss_pred CeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 4 PV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
+++++|||.||..||..|+... ..||.||..+.
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEG-------------------YRCPLCSGPSS 54 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHT-------------------CCCTTSCCSSC
T ss_pred eEecCCCCcccHHHHHHHHHcC-------------------CcCCCCCCcCC
Confidence 6778999999999999998744 38999998653
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=6.1e-08 Score=68.01 Aligned_cols=32 Identities=28% Similarity=0.788 Sum_probs=27.5
Q ss_pred eEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 5 VTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 5 V~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
+.++|+|.||..||..|+... ..||.||+.+.
T Consensus 40 ~~l~C~H~fh~~Ci~~w~~~~-------------------~~CP~Cr~~~~ 71 (75)
T 1x4j_A 40 RVLPCNHEFHAKCVDKWLKAN-------------------RTCPICRADSG 71 (75)
T ss_dssp EEETTTEEEETTHHHHHHHHC-------------------SSCTTTCCCCC
T ss_pred EEECCCCHhHHHHHHHHHHcC-------------------CcCcCcCCcCC
Confidence 678999999999999998744 37999999765
No 46
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.38 E-value=8.5e-08 Score=63.06 Aligned_cols=32 Identities=25% Similarity=0.718 Sum_probs=26.9
Q ss_pred CeEcC-CCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCcccc
Q 028419 4 PVTTP-CAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDI 54 (209)
Q Consensus 4 PV~Lp-CGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i 54 (209)
++.++ |||.||..||..|+... ..||.||..+
T Consensus 21 ~~~~~~C~H~f~~~Ci~~w~~~~-------------------~~CP~Cr~~~ 53 (55)
T 1iym_A 21 ARFLPRCGHGFHAECVDMWLGSH-------------------STCPLCRLTV 53 (55)
T ss_dssp CEECSSSCCEECTTHHHHTTTTC-------------------CSCSSSCCCS
T ss_pred eEECCCCCCcccHHHHHHHHHcC-------------------CcCcCCCCEe
Confidence 67787 99999999999988643 3799999865
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=2.7e-08 Score=66.95 Aligned_cols=33 Identities=36% Similarity=0.878 Sum_probs=27.6
Q ss_pred CCCCeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQPVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dPV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|.+|++|+|||+||..||..+ ...||.||..+.
T Consensus 16 ~~~p~~l~CgH~fC~~Ci~~~----------------------~~~CP~Cr~~~~ 48 (56)
T 1bor_A 16 AKCPKLLPCLHTLCSGCLEAS----------------------GMQCPICQAPWP 48 (56)
T ss_dssp CBCCSCSTTSCCSBTTTCSSS----------------------SSSCSSCCSSSS
T ss_pred cCCeEEcCCCCcccHHHHccC----------------------CCCCCcCCcEee
Confidence 568999999999999998651 247999999876
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=5.1e-08 Score=67.26 Aligned_cols=32 Identities=31% Similarity=0.953 Sum_probs=27.7
Q ss_pred eEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 5 VTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 5 V~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++++|||.||..||..|+... ..||.||..+.
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 59 (70)
T 2ecn_A 28 LILPCAHSFCQKCIDKWSDRH-------------------RNCPICRLQMT 59 (70)
T ss_dssp EEETTTEEECHHHHHHSSCCC-------------------SSCHHHHHCTT
T ss_pred cccCCCCcccHHHHHHHHHCc-------------------CcCCCcCCccc
Confidence 789999999999999987633 48999999876
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.35 E-value=1.4e-07 Score=68.21 Aligned_cols=34 Identities=21% Similarity=0.529 Sum_probs=27.1
Q ss_pred CeEcC--CCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 4 PVTTP--CAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 4 PV~Lp--CGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++++| |||+||+.|+..+|... .+.||.||..+.
T Consensus 26 ~~~~p~~CGH~fC~~Cl~~~~~~~------------------~~~CP~CR~~~~ 61 (78)
T 1e4u_A 26 INFFPCTCGYQICRFCWHRIRTDE------------------NGLCPACRKPYP 61 (78)
T ss_dssp TTCCSSTTSCCCCHHHHHHHTTSS------------------CSBCTTTCCBCS
T ss_pred ccccccCCCCCcCHHHHHHHHhcC------------------CCCCCCCCCccC
Confidence 34444 99999999999998632 358999999886
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.9e-07 Score=64.97 Aligned_cols=32 Identities=28% Similarity=0.748 Sum_probs=27.0
Q ss_pred EcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCcccccc
Q 028419 6 TTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISD 56 (209)
Q Consensus 6 ~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~ 56 (209)
+++|+|.||..||..|+.... .||.||..+..
T Consensus 33 ~~~C~H~f~~~Ci~~~~~~~~-------------------~CP~Cr~~~~~ 64 (74)
T 2ep4_A 33 ICPCKHAFHRKCLIKWLEVRK-------------------VCPLCNMPVLQ 64 (74)
T ss_dssp EETTTEEEEHHHHHHHHHHCS-------------------BCTTTCCBCSS
T ss_pred EcCCCCEecHHHHHHHHHcCC-------------------cCCCcCccccc
Confidence 359999999999999997443 79999998763
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.33 E-value=2.1e-07 Score=69.83 Aligned_cols=36 Identities=31% Similarity=0.671 Sum_probs=27.9
Q ss_pred EcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 6 TTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 6 ~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
.++|+|.||..||..|+.... ......||+||..+.
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~--------------~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGN--------------KDGSLQCPSCKTIYG 93 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTC--------------CSSCCBCTTTCCBSS
T ss_pred cCCCCCcccHHHHHHHHHccc--------------CCCCCcCCCCCCccC
Confidence 689999999999999995321 012458999999875
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.33 E-value=7.8e-08 Score=72.67 Aligned_cols=32 Identities=38% Similarity=1.058 Sum_probs=28.3
Q ss_pred eEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 5 VTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 5 V~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++++|||+||..||.+|+.... .||.||..+.
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~~~~-------------------~CP~Cr~~~~ 59 (133)
T 4ap4_A 28 VSTECGHVFCSQCLRDSLKNAN-------------------TCPTCRKKIN 59 (133)
T ss_dssp EEETTCCEEEHHHHHHHHTTCS-------------------BCTTTCCBCT
T ss_pred EecCCCChhhHHHHHHHHHhCC-------------------CCCCCCCcCc
Confidence 8899999999999999997443 7999999876
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.30 E-value=1.1e-07 Score=67.31 Aligned_cols=32 Identities=44% Similarity=0.805 Sum_probs=27.4
Q ss_pred CCCCeEcCCCCh-hHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQPVTTPCAHN-FCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dPV~LpCGH~-FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|.+||++||||. ||..|+..| ..||.||..+.
T Consensus 34 ~~~~~~~pCgH~~~C~~C~~~~-----------------------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 34 NIAIVFVPCGHLVTCKQCAEAV-----------------------DKCPMCYTVIT 66 (74)
T ss_dssp BCCEEEETTCCBCCCHHHHTTC-----------------------SBCTTTCCBCS
T ss_pred CCCEEEcCCCChhHHHHhhhcC-----------------------ccCCCcCcCcc
Confidence 467899999999 999998765 26999999876
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=3.4e-07 Score=64.67 Aligned_cols=33 Identities=42% Similarity=0.735 Sum_probs=27.4
Q ss_pred CCCCeEcCCCCh-hHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCcccccc
Q 028419 1 MAQPVTTPCAHN-FCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISD 56 (209)
Q Consensus 1 f~dPV~LpCGH~-FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~ 56 (209)
|.+||++||||. ||..|+... ..||.||..+..
T Consensus 35 ~~~~~~~pCgH~~~C~~C~~~~-----------------------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 35 NIAIVFVPCGHLVTCKQCAEAV-----------------------DKCPMCYTVITF 68 (75)
T ss_dssp CCCBCCSSSCCCCBCHHHHHHC-----------------------SBCTTTCCBCCC
T ss_pred CCCEEEecCCCHHHHHHHhhCC-----------------------CCCccCCceecC
Confidence 468999999999 999999531 379999998863
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.11 E-value=7.2e-07 Score=61.51 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=28.5
Q ss_pred CCCeEc--CCCCh-hHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 2 AQPVTT--PCAHN-FCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 2 ~dPV~L--pCGH~-FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
.+++++ ||||. ||..|+..++... ..||.||..+.
T Consensus 18 ~~~~~~~~pCgH~~~C~~C~~~~~~~~-------------------~~CPiCR~~i~ 55 (63)
T 2vje_B 18 RDGNIIHGRTGHLVTCFHCARRLKKAG-------------------ASCPICKKEIQ 55 (63)
T ss_dssp SCEEEEETTEEEEEECHHHHHHHHHTT-------------------CBCTTTCCBCC
T ss_pred CCeEEEecCCCCHhHHHHHHHHHHHhC-------------------CcCCCcCchhh
Confidence 356666 99998 9999999988633 37999999876
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.10 E-value=8.4e-07 Score=61.35 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=28.9
Q ss_pred CCCeEc--CCCCh-hHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 2 AQPVTT--PCAHN-FCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 2 ~dPV~L--pCGH~-FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
.+++++ ||||. ||..|+..++... ..||.||..+.
T Consensus 19 ~~~~~~~~pCgH~~~C~~C~~~~~~~~-------------------~~CPiCR~~i~ 56 (64)
T 2vje_A 19 KNGCIVHGKTGHLMACFTCAKKLKKRN-------------------KPCPVCRQPIQ 56 (64)
T ss_dssp SCEEEEETTEEEEEECHHHHHHHHHTT-------------------CCCTTTCCCCC
T ss_pred CCEEEECCCCCChhhHHHHHHHHHHcC-------------------CcCCCcCcchh
Confidence 466776 99999 8999999988643 37999999876
No 57
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.10 E-value=2.4e-07 Score=66.79 Aligned_cols=32 Identities=28% Similarity=0.812 Sum_probs=27.0
Q ss_pred CCCCeEcCCCCh-hHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQPVTTPCAHN-FCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dPV~LpCGH~-FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
+.+||++||||. ||..|+..++ .||.||..+.
T Consensus 28 ~~~~v~~pCgH~~~C~~C~~~~~-----------------------~CP~Cr~~i~ 60 (79)
T 2yho_A 28 EINSTFCPCGHTVCCESCAAQLQ-----------------------SCPVCRSRVE 60 (79)
T ss_dssp BCCEEEETTCBCCBCHHHHTTCS-----------------------BCTTTCCBCC
T ss_pred cCcEEEECCCCHHHHHHHHHhcC-----------------------cCCCCCchhh
Confidence 357899999999 9999987532 6999999987
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=62.94 Aligned_cols=33 Identities=27% Similarity=0.640 Sum_probs=27.3
Q ss_pred CeEcC-CCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 4 PVTTP-CAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 4 PV~Lp-CGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
+++++ |+|.|+..||..|+.... +||+||..+.
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~~-------------------~CP~CR~~~~ 75 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQNN-------------------RCPLCQQDWV 75 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTCC-------------------BCTTTCCBCC
T ss_pred EEEeCCCCCccChHHHHHHHHhCC-------------------CCCCcCCCcc
Confidence 55665 999999999999987543 8999999765
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.06 E-value=1.5e-06 Score=65.57 Aligned_cols=33 Identities=36% Similarity=0.969 Sum_probs=28.7
Q ss_pred CeEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 4 PVTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 4 PV~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++.++|||.||..||..|+... ..||.||..+.
T Consensus 92 ~~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 124 (133)
T 4ap4_A 92 IVSTECGHVFCSQCLRDSLKNA-------------------NTCPTCRKKIN 124 (133)
T ss_dssp EEEETTSBEEEHHHHHHHHHHC-------------------SBCTTTCCBCC
T ss_pred eEeCCCCChhhHHHHHHHHHcC-------------------CCCCCCCCcCC
Confidence 4788999999999999999744 38999999876
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=2e-06 Score=60.42 Aligned_cols=33 Identities=27% Similarity=0.766 Sum_probs=27.2
Q ss_pred CCCCeEcCCCCh-hHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCcccccc
Q 028419 1 MAQPVTTPCAHN-FCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISD 56 (209)
Q Consensus 1 f~dPV~LpCGH~-FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~ 56 (209)
+.++|++||||. ||..|+... ..||.||..+..
T Consensus 25 ~~~~v~~pCgH~~~C~~C~~~~-----------------------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 25 TVNWVLLPCRHTCLCDGCVKYF-----------------------QQCPMCRQFVQE 58 (68)
T ss_dssp CCCCEETTTTBCCSCTTHHHHC-----------------------SSCTTTCCCCCC
T ss_pred CCCEEEECCCChhhhHHHHhcC-----------------------CCCCCCCcchhc
Confidence 357899999999 999999831 279999998863
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.92 E-value=7.5e-07 Score=65.25 Aligned_cols=35 Identities=31% Similarity=0.768 Sum_probs=25.5
Q ss_pred CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCC--Cccc
Q 028419 8 PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPS--CTTD 53 (209)
Q Consensus 8 pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~--CR~~ 53 (209)
+|||.||..||..+|...- .+ | ....+.||. |+..
T Consensus 25 ~CgH~FC~~Cl~~~~~~~i--~~---g------~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 25 QCQCIFCTLCLKQYVELLI--KE---G------LETAISCPDAACPKQ 61 (94)
T ss_dssp TTTEEEEHHHHHHHHHHHH--HH---C------SCCCEECSCTTCSSC
T ss_pred CCCCcccHHHHHHHHHHHh--hc---C------CcccccCccccCCCC
Confidence 7999999999999998532 00 0 012468999 9987
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.87 E-value=6.2e-06 Score=62.90 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=26.7
Q ss_pred eEcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 5 VTTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 5 V~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
+.++|+|.|+..||..|+... ..||+||+.+.
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~~-------------------~~CP~Cr~~~~ 100 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKTR-------------------QVCPLDNREWE 100 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTTC-------------------SBCSSSCSBCC
T ss_pred eecccCcEECHHHHHHHHHcC-------------------CcCcCCCCcce
Confidence 447999999999999998754 37999999753
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.83 E-value=4.4e-06 Score=57.73 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=31.5
Q ss_pred CCCCeEc-CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 1 MAQPVTT-PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 1 f~dPV~L-pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
|.+||++ +|||+||+.||.+|+.... +||.++..+.
T Consensus 13 m~dPV~~~~sG~~yer~~I~~~l~~~~-------------------~cP~t~~~L~ 49 (61)
T 2bay_A 13 PRRPVLSPKSRTIFEKSLLEQYVKDTG-------------------NDPITNEPLS 49 (61)
T ss_dssp CSSEEEETTTTEEEEHHHHHHHHHHHS-------------------BCTTTCCBCC
T ss_pred CCCCEEeCCCCcEEcHHHHHHHHHhCC-------------------CCcCCcCCCC
Confidence 5799999 8999999999999997443 6999999876
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.49 E-value=1.5e-05 Score=62.10 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=0.0
Q ss_pred cCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCcccc
Q 028419 7 TPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDI 54 (209)
Q Consensus 7 LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i 54 (209)
++|+|.|+..||..|+.... .||+||..+
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~~-------------------~CP~Cr~~~ 110 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTRQ-------------------VCPLDNREW 110 (117)
T ss_dssp ------------------------------------------------
T ss_pred CCcCceEcHHHHHHHHHcCC-------------------cCCCCCCee
Confidence 58999999999999987543 799999964
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.21 E-value=0.00016 Score=55.51 Aligned_cols=32 Identities=28% Similarity=0.719 Sum_probs=26.5
Q ss_pred EcCCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 6 TTPCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 6 ~LpCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
++||.|.||..|+..|+.... ..||.|+..+.
T Consensus 17 mIPCkHvFCydCa~~~~~~~~------------------k~Cp~C~~~V~ 48 (101)
T 3vk6_A 17 MIPCKHVFCYDCAILHEKKGD------------------KMCPGCSDPVQ 48 (101)
T ss_dssp EETTCCEEEHHHHHHHHHTTC------------------CBCTTTCCBCS
T ss_pred eccccccHHHHHHHHHHhccC------------------CCCcCcCCeee
Confidence 579999999999999886432 47999999875
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.00014 Score=52.68 Aligned_cols=36 Identities=25% Similarity=0.620 Sum_probs=30.0
Q ss_pred CCeEcCCC-----ChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 3 QPVTTPCA-----HNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 3 dPV~LpCG-----H~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
.++++||. |.|...||.+|+.... ...||+||..+.
T Consensus 29 ~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-----------------~~~CplCr~~~~ 69 (80)
T 2d8s_A 29 SPLITPCHCTGSLHFVHQACLQQWIKSSD-----------------TRCCELCKYEFI 69 (80)
T ss_dssp SCEECSSSCCSSSCCEETTHHHHHHHHHC-----------------CSBCSSSCCBCC
T ss_pred CeeEeccccCCcCCeeCHHHHHHHHhhCC-----------------CCCCCCCCCeee
Confidence 57889996 9999999999997432 358999999875
No 67
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.07 E-value=0.025 Score=43.02 Aligned_cols=31 Identities=29% Similarity=0.786 Sum_probs=25.3
Q ss_pred EcCCC-ChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 6 TTPCA-HNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 6 ~LpCG-H~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
.+.|. |++|+.||..++.... .||+|.+++.
T Consensus 41 LV~C~dHYLCl~CLtlmL~~Sd-------------------rCpIC~~pLP 72 (99)
T 2ko5_A 41 LVECNNHYLCLNCLTLLLSVSN-------------------RCPICKMPLP 72 (99)
T ss_dssp EEECSSCEEEHHHHHHTCSSSS-------------------EETTTTEECC
T ss_pred eeeecchhhHHHHHHHHHhhcc-------------------CCcccCCcCC
Confidence 35666 9999999998887554 7999999875
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.46 E-value=0.084 Score=37.69 Aligned_cols=31 Identities=19% Similarity=0.591 Sum_probs=25.4
Q ss_pred CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 8 PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 8 pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
.|+|.|=..||.+||..+. ..+||.|+....
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~-----------------~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNA-----------------EPRCPHCNDYWP 63 (74)
T ss_dssp SSCCEECHHHHHHHSTTCS-----------------SCCCTTTCSCCC
T ss_pred CCCchhhHHHHHHHHHhcC-----------------CCCCCCCcCcCC
Confidence 6999999999999997542 248999998765
No 69
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.38 E-value=0.033 Score=51.13 Aligned_cols=28 Identities=21% Similarity=0.635 Sum_probs=21.1
Q ss_pred CcccCCCCccccccCcCCCcccHHHHHHHH
Q 028419 43 TIMKCPSCTTDISDFLKDPQVNRELMEVIE 72 (209)
Q Consensus 43 ~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve 72 (209)
..+.||+|...+. +..+.+...+..++.
T Consensus 287 ~~W~CPIC~k~~~--~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 287 PTWQCPVCQIDIA--LENLAISEFVDDILQ 314 (371)
T ss_dssp CCCBCTTTCCBCC--GGGEEEBHHHHHHHT
T ss_pred CceeCCCCCcccC--HHHeeEcHHHHHHHH
Confidence 4689999999877 567777776666654
No 70
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.26 E-value=0.079 Score=53.86 Aligned_cols=59 Identities=27% Similarity=0.375 Sum_probs=49.3
Q ss_pred CCCCeEcCCC-ChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHHHHHHHHHHHhcCC
Q 028419 1 MAQPVTTPCA-HNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRELMEVIESLKQKTE 79 (209)
Q Consensus 1 f~dPV~LpCG-H~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve~lk~~~~ 79 (209)
|.+||++|.| ++|=+.+|.+|+.... +||.=|.++. ...+.+|..|+..|..+...+.
T Consensus 901 M~DPVilpsG~~TydR~~I~~wl~~~~-------------------tdP~Tr~~L~--~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 901 MKDPVILPASKMNIDRSTIKAHLLSDS-------------------TDPFNRMPLK--LEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHTTCC-------------------BCTTTCCBCC--GGGCEECHHHHHHHHHHHHHHH
T ss_pred HhCCeEcCCCCEEECHHHHHHHHhcCC-------------------CCCCCCCCCC--cccccccHHHHHHHHHHHHHHH
Confidence 6799999998 6999999999997433 7999999887 4678899999999999876554
Q ss_pred c
Q 028419 80 E 80 (209)
Q Consensus 80 ~ 80 (209)
.
T Consensus 960 ~ 960 (968)
T 3m62_A 960 E 960 (968)
T ss_dssp T
T ss_pred h
Confidence 3
No 71
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.15 E-value=0.037 Score=40.20 Aligned_cols=22 Identities=23% Similarity=0.756 Sum_probs=18.7
Q ss_pred CCCeE--cCCCChhHHHHHHHHHh
Q 028419 2 AQPVT--TPCAHNFCKSCLEEAFS 23 (209)
Q Consensus 2 ~dPV~--LpCGH~FC~~CL~~~~~ 23 (209)
..||. +.|+|+||..|+..++.
T Consensus 15 ~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 15 QDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCceEECCcCChHHhHHHCHHHhc
Confidence 56788 89999999999998554
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.72 E-value=0.11 Score=35.21 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=26.0
Q ss_pred CCeEcCCCC-----hhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 3 QPVTTPCAH-----NFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 3 dPV~LpCGH-----~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
.|+++||.+ .|=..||.+|+.... ...||+|+..+.
T Consensus 18 ~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-----------------~~~C~~C~~~~~ 58 (60)
T 1vyx_A 18 NERFRACGCTGELENVHRSCLSTWLTISR-----------------NTACQICGVVYN 58 (60)
T ss_dssp CCCCCSCCCSSGGGSCCHHHHHHHHHHHT-----------------CSBCTTTCCBCC
T ss_pred CceecCcCCCCchhhhHHHHHHHHHHhCC-----------------CCccCCCCCeee
Confidence 467788653 566789999997432 358999998654
No 73
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=78.57 E-value=1.3 Score=40.33 Aligned_cols=28 Identities=18% Similarity=0.493 Sum_probs=21.4
Q ss_pred CcccCCCCccccccCcCCCcccHHHHHHHH
Q 028419 43 TIMKCPSCTTDISDFLKDPQVNRELMEVIE 72 (209)
Q Consensus 43 ~~~~CP~CR~~i~~~~~~~~~N~~L~~Lve 72 (209)
..+.||.|...+. +..+.+..-+..++.
T Consensus 253 ~~W~CPiC~k~~~--~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 253 PTWICPVCDKKAA--YESLILDGLFMEILN 280 (360)
T ss_dssp CCCBCTTTCSBCC--GGGEEEBHHHHHHHT
T ss_pred CCeECCCCCcccC--HHHeEEcHHHHHHHH
Confidence 3689999999887 567777777766664
No 74
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=62.39 E-value=2.4 Score=32.41 Aligned_cols=15 Identities=27% Similarity=0.895 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhcCc
Q 028419 12 NFCKSCLEEAFSGKS 26 (209)
Q Consensus 12 ~FC~~CL~~~~~~~~ 26 (209)
.||+.||.+|+....
T Consensus 42 GFCRNCLskWy~~aA 56 (105)
T 2o35_A 42 GFCRNCLSNWYREAA 56 (105)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 499999999998653
No 75
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=61.73 E-value=2.5 Score=32.25 Aligned_cols=14 Identities=29% Similarity=0.876 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHhcC
Q 028419 12 NFCKSCLEEAFSGK 25 (209)
Q Consensus 12 ~FC~~CL~~~~~~~ 25 (209)
.||+.||..|+...
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999854
No 76
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=52.91 E-value=6.2 Score=31.34 Aligned_cols=37 Identities=22% Similarity=0.587 Sum_probs=22.5
Q ss_pred CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCcc
Q 028419 8 PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTT 52 (209)
Q Consensus 8 pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~ 52 (209)
.|-..||..||...+...... ......+.+.||.|+.
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~--------~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELS--------TIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHH--------HHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhh--------hcccCCCCCEeecccC
Confidence 588899999998765411000 0001135789999975
No 77
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.56 E-value=23 Score=21.66 Aligned_cols=12 Identities=25% Similarity=0.805 Sum_probs=9.6
Q ss_pred cccCCCCccccc
Q 028419 44 IMKCPSCTTDIS 55 (209)
Q Consensus 44 ~~~CP~CR~~i~ 55 (209)
.|.||.|...+.
T Consensus 5 GFiCP~C~~~l~ 16 (34)
T 3mjh_B 5 GFICPQCMKSLG 16 (34)
T ss_dssp EEECTTTCCEES
T ss_pred ccCCcHHHHHcC
Confidence 489999988654
No 78
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.50 E-value=23 Score=32.46 Aligned_cols=50 Identities=12% Similarity=0.257 Sum_probs=29.4
Q ss_pred CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHH
Q 028419 8 PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRE 66 (209)
Q Consensus 8 pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~ 66 (209)
.|...||..||.+.+.......- .....+.|-.|...-...+-..+.|+.
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i---------~~~d~W~Cf~C~p~p~~~ll~~r~~w~ 161 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKV---------HAMSNWVCYLCLPSSRSGLLQRRRKWR 161 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHH---------HHCSSCCCTTTSSCCEETTEEBCSSHH
T ss_pred CCCcchHHHHHHHhcChhHHHHh---------hccCCceEEEcCCcchHhhhhhhhhHH
Confidence 68899999999988753321100 112468999997653222222345553
No 79
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.52 E-value=27 Score=28.28 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=30.1
Q ss_pred CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccccCcCCCcccHH
Q 028419 8 PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDISDFLKDPQVNRE 66 (209)
Q Consensus 8 pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~~~~~~~~~N~~ 66 (209)
.|-..||..||...+...... .-.....+.|-.|......++-..+.|+.
T Consensus 98 ~C~r~FC~~CI~~nvG~~~~~---------~i~~~d~W~Cy~C~P~~l~~ll~~R~dw~ 147 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGPGAAQ---------AAIKEDPWNCYMCGHKGTYGLLRRREDWP 147 (159)
T ss_dssp TTCCEEEHHHHHHHTCTTHHH---------HHHTSSSCCCTTTCSSCEETTEEBCTTHH
T ss_pred CCCCchhHHHHHHhcCHhHHH---------HHhccCCCEEEecCCccHHHHhhhhhhHH
Confidence 588999999998887643210 00123568899997644332333355554
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=25.50 E-value=66 Score=23.92 Aligned_cols=30 Identities=27% Similarity=0.685 Sum_probs=20.9
Q ss_pred CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCccccc
Q 028419 8 PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTTDIS 55 (209)
Q Consensus 8 pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~~i~ 55 (209)
.|+-..|+.|..--... +...||.|...+.
T Consensus 40 eC~FPvCrpCyEYErke------------------G~q~CpqCktrYk 69 (93)
T 1weo_A 40 ECGFPACRPCYEYERRE------------------GTQNCPQCKTRYK 69 (93)
T ss_dssp SSCCCCCHHHHHHHHHT------------------SCSSCTTTCCCCC
T ss_pred ccCChhhHHHHHHHHhc------------------cCccccccCCccc
Confidence 47777899998644332 2357999988665
No 81
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=23.94 E-value=23 Score=24.05 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=10.0
Q ss_pred CCCChhHHHHHH
Q 028419 8 PCAHNFCKSCLE 19 (209)
Q Consensus 8 pCGH~FC~~CL~ 19 (209)
.|++.||..|=.
T Consensus 35 ~C~~~FC~dCD~ 46 (59)
T 1z60_A 35 VCQNVFCVDCDV 46 (59)
T ss_dssp TTTCCBCHHHHH
T ss_pred ccCcCcccchhH
Confidence 589999999953
No 82
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.92 E-value=9.9 Score=26.76 Aligned_cols=14 Identities=36% Similarity=1.004 Sum_probs=11.8
Q ss_pred CCCChhHHHHHHHH
Q 028419 8 PCAHNFCKSCLEEA 21 (209)
Q Consensus 8 pCGH~FC~~CL~~~ 21 (209)
.|+|.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999998654
No 83
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=23.46 E-value=12 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.788 Sum_probs=13.4
Q ss_pred cCCCChhHHHHHHHHHh
Q 028419 7 TPCAHNFCKSCLEEAFS 23 (209)
Q Consensus 7 LpCGH~FC~~CL~~~~~ 23 (209)
.+|.|++|..|...++-
T Consensus 10 ascehtmcgycqgplym 26 (40)
T 1erd_A 10 ASCEHTMCGYCQGPLYM 26 (40)
T ss_dssp HHTCGGGGGGSCHHHHH
T ss_pred HhccccccccccCCeeE
Confidence 37999999998766654
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=21.02 E-value=84 Score=24.36 Aligned_cols=37 Identities=19% Similarity=0.582 Sum_probs=21.9
Q ss_pred CCCChhHHHHHHHHHhcCccchhcccCccccccCCCcccCCCCcc
Q 028419 8 PCAHNFCKSCLEEAFSGKSFVRERSRGGRALRSQKTIMKCPSCTT 52 (209)
Q Consensus 8 pCGH~FC~~CL~~~~~~~~~~~~r~~g~~~~r~~~~~~~CP~CR~ 52 (209)
.|-..||..||...+...... ......+.+.|+.|+.
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~--------~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELS--------TIMDENNQWYCYICHP 110 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHH--------HHTCTTSCCCCTTTCC
T ss_pred CCchhhhHHHhCCCcchhHHH--------HhccCCCCeEcCCcCC
Confidence 477899999998763211000 0000135789999955
No 85
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.72 E-value=13 Score=26.31 Aligned_cols=17 Identities=35% Similarity=0.913 Sum_probs=11.7
Q ss_pred eEcC-CCChhHHHHHHHH
Q 028419 5 VTTP-CAHNFCKSCLEEA 21 (209)
Q Consensus 5 V~Lp-CGH~FC~~CL~~~ 21 (209)
|+=+ |++.||..|...|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 4444 8888888776543
No 86
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.24 E-value=17 Score=27.69 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=8.3
Q ss_pred cccCCCCcccc
Q 028419 44 IMKCPSCTTDI 54 (209)
Q Consensus 44 ~~~CP~CR~~i 54 (209)
...||.|+..-
T Consensus 84 PsrCP~CkSe~ 94 (105)
T 2gmg_A 84 PSRCPKCKSEW 94 (105)
T ss_dssp CSSCSSSCCCC
T ss_pred CCCCcCCCCCc
Confidence 35899998753
Done!