Query 028421
Match_columns 209
No_of_seqs 188 out of 1204
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 11:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 3.5E-71 7.5E-76 503.9 16.8 207 1-208 1-222 (347)
2 PLN03019 carbonic anhydrase 100.0 3.7E-45 8E-50 331.8 13.7 185 19-208 28-217 (330)
3 PLN00416 carbonate dehydratase 100.0 5.4E-40 1.2E-44 290.0 12.8 142 66-208 1-142 (258)
4 PLN03006 carbonate dehydratase 100.0 8.4E-36 1.8E-40 268.3 10.2 125 83-208 48-174 (301)
5 KOG1578 Predicted carbonic anh 100.0 8.8E-31 1.9E-35 232.4 4.9 155 43-208 2-156 (276)
6 COG0288 CynT Carbonic anhydras 100.0 2.5E-29 5.4E-34 215.8 8.6 92 113-208 2-94 (207)
7 PRK15219 carbonic anhydrase; P 100.0 1.3E-28 2.7E-33 216.3 9.4 93 108-208 50-145 (245)
8 cd00883 beta_CA_cladeA Carboni 99.9 1.6E-28 3.4E-33 206.0 7.2 83 122-208 1-83 (182)
9 PRK10437 carbonic anhydrase; P 99.9 3.6E-28 7.7E-33 210.7 8.8 91 114-208 3-93 (220)
10 PLN02154 carbonic anhydrase 99.9 1.3E-27 2.9E-32 214.3 10.4 99 109-208 70-168 (290)
11 cd00884 beta_CA_cladeB Carboni 99.9 7.5E-28 1.6E-32 203.9 6.9 88 121-208 1-89 (190)
12 cd03378 beta_CA_cladeC Carboni 99.9 6.8E-27 1.5E-31 193.0 8.9 91 111-208 1-94 (154)
13 cd00382 beta_CA Carbonic anhyd 99.8 8.1E-22 1.8E-26 155.4 6.0 61 144-208 1-61 (119)
14 PF00484 Pro_CA: Carbonic anhy 99.8 4.1E-20 8.9E-25 148.5 4.1 57 148-208 1-57 (153)
15 cd03379 beta_CA_cladeD Carboni 99.8 1.2E-19 2.6E-24 146.7 5.3 58 144-208 1-58 (142)
16 KOG1578 Predicted carbonic anh 95.2 0.00074 1.6E-08 61.1 -5.4 65 118-185 3-83 (276)
17 PF14618 DUF4452: Domain of un 51.9 13 0.00028 31.8 2.5 63 6-68 77-149 (165)
18 PRK14066 exodeoxyribonuclease 43.1 50 0.0011 24.5 4.2 32 66-97 1-34 (75)
19 TIGR02742 TrbC_Ftype type-F co 42.5 92 0.002 25.3 6.1 55 131-204 58-112 (130)
20 PF12778 PXPV: PXPV repeat (3 40.4 15 0.00033 21.6 0.9 18 41-58 4-21 (22)
21 KOG0025 Zn2+-binding dehydroge 33.9 32 0.0007 32.5 2.4 38 161-209 153-190 (354)
22 PRK14068 exodeoxyribonuclease 29.1 1.1E+02 0.0025 22.6 4.3 15 68-82 5-19 (76)
23 PRK09778 putative antitoxin of 28.3 79 0.0017 24.9 3.4 43 12-67 6-50 (97)
24 PRK14064 exodeoxyribonuclease 26.6 1.4E+02 0.0029 22.1 4.3 14 69-82 6-19 (75)
25 PF09976 TPR_21: Tetratricopep 24.1 1.9E+02 0.0042 22.4 5.0 65 66-130 59-134 (145)
26 PRK10803 tol-pal system protei 22.0 1.4E+02 0.003 26.7 4.2 50 50-105 23-72 (263)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=3.5e-71 Score=503.88 Aligned_cols=207 Identities=73% Similarity=1.106 Sum_probs=194.3
Q ss_pred CCcccccceeecccccccccccccCcCCc-eeEeeccCC------------CCCCCcccCCccccCCCCccCcchhHHhh
Q 028421 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLNSP------------ASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~p~~~p~~~~~m~ 67 (209)
|||++|||||+||++++++++++ .++|| ++||+|+++ ++||+||||+||||||+|||+|+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 899999621 33899999999999999999999999999
Q ss_pred hccHHHHHHHHHHHhhhhcCchhHHHHhHHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 028421 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (209)
Q Consensus 68 ~~~~~~a~~~l~~ll~~~~~l~~~aa~ki~~lt~el~~~~--~~~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (209)
++|||+||++|+|||+||++|+.+|++||+++|+||++.. ...+++++++|++||++|+.+.+.+++++|+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999632 35679999999999999999999999999999999999
Q ss_pred CcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHHhcCcccc
Q 028421 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 146 P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~~L~Vk~I 208 (209)
|+++||+||||||+|+.|||++|||+||+||+||+|+++|...++++.++|||||.+|||++|
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~I 222 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENI 222 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEE
Confidence 999999999999999999999999999999999999998865566799999999999999998
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=3.7e-45 Score=331.79 Aligned_cols=185 Identities=65% Similarity=0.915 Sum_probs=152.7
Q ss_pred ccccccCcCCceeEeeccCCCCCC---CcccCCccccCCCCccCcchhHHhhhccHHHHHHHHHHHhhhhcCchhHHHHh
Q 028421 19 SSLIKSSTLRPSIVARLNSPASPP---SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAK 95 (209)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~p~~~~~m~~~~~~~a~~~l~~ll~~~~~l~~~aa~k 95 (209)
.+.|- ++|||+---.|- --+| +-..|-+.+. ++ -..+.-.++|+++|||+||++|+|||+||.+|+.+|++|
T Consensus 28 ~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 102 (330)
T PLN03019 28 KQYKY-PSLRPSHRLSLL--FLFPFHLSANGACFRCT-CF-SHFKLELRRMGNESYEDAIEALKKLLIEKDDLKDVAAAK 102 (330)
T ss_pred hhccC-CCcCccceeeee--hhhhhhHhhccccceee-cc-ccCchhhHHHhhhhHHHHHHHHHhhcccccccchHHHHH
Confidence 33344 889997543322 1122 2223333333 22 112233456899999999999999999999999999999
Q ss_pred HHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEE
Q 028421 96 VEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFV 173 (209)
Q Consensus 96 i~~lt~el~~~~--~~~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FV 173 (209)
|+++|+||++.. ...+++++++|++||++|+.+.+.+++++|.++++||+|+++||+||||||+|+.|||++|||+||
T Consensus 103 ~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFV 182 (330)
T PLN03019 103 VKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFV 182 (330)
T ss_pred HHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhccCCCCCEEEEEecccCCCHHHHhCCCCCceEE
Confidence 999999999633 356899999999999999999998999999999999999999999999999999999999999999
Q ss_pred EeecCccCCCCCCCccchhHHHHHHHHHhcCcccc
Q 028421 174 VRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 174 vRNaGNiVpp~d~~~~~~v~ASLEYAV~~L~Vk~I 208 (209)
|||+||+|+++|.+.++++.++|||||.+|||++|
T Consensus 183 vRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~I 217 (330)
T PLN03019 183 VRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENI 217 (330)
T ss_pred EeccccccCCcccccccccchhHHHHHHHhCCCEE
Confidence 99999999999876677899999999999999998
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=5.4e-40 Score=290.00 Aligned_cols=142 Identities=62% Similarity=1.007 Sum_probs=135.1
Q ss_pred hhhccHHHHHHHHHHHhhhhcCchhHHHHhHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 028421 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (209)
Q Consensus 66 m~~~~~~~a~~~l~~ll~~~~~l~~~aa~ki~~lt~el~~~~~~~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (209)
|+.+||+++|.+|.+||+.+..+++.++.++..++++|++.. .+|.+++++|++||+||+.+.+.+++++|++++.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 789999999999999999999999999999999999999875 6799999999999999999998888999999999999
Q ss_pred CcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHHhcCcccc
Q 028421 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 146 P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~~L~Vk~I 208 (209)
|+++|||||||||+|+.|||++|||+|||||+||+|+++|...++++.++|||||.+|||++|
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~I 142 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENI 142 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEE
Confidence 999999999999999999999999999999999999998764456789999999999999998
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=8.4e-36 Score=268.26 Aligned_cols=125 Identities=40% Similarity=0.720 Sum_probs=115.0
Q ss_pred hhhcCchhHHHHhHHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCc
Q 028421 83 KEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCP 160 (209)
Q Consensus 83 ~~~~~l~~~aa~ki~~lt~el~~~~--~~~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~P 160 (209)
++..+|+.+|++|+++||+||++.. ...+++++++|++||.+|+...+.+++++|.++++||+|+++||+||||||+|
T Consensus 48 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~P 127 (301)
T PLN03006 48 RKATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCP 127 (301)
T ss_pred ccccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCH
Confidence 3456888999999999999999754 34579999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHHhcCcccc
Q 028421 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 161 e~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~~L~Vk~I 208 (209)
+.|||++|||+|||||+||+|+++|.+. .++.++|||||.+|||++|
T Consensus 128 e~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~I 174 (301)
T PLN03006 128 SAVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENI 174 (301)
T ss_pred HHHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEE
Confidence 9999999999999999999999987642 5689999999999999998
No 5
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.8e-31 Score=232.35 Aligned_cols=155 Identities=40% Similarity=0.594 Sum_probs=148.6
Q ss_pred CcccCCccccCCCCccCcchhHHhhhccHHHHHHHHHHHhhhhcCchhHHHHhHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 028421 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (209)
Q Consensus 43 ~~~~~~~~~~~~~p~~~p~~~~~m~~~~~~~a~~~l~~ll~~~~~l~~~aa~ki~~lt~el~~~~~~~p~~~le~Ll~GN 122 (209)
.|+|+.+.|+.+.+.+.+.+.++|...+|+.++..+.++|..+-++ ++++|+.++|++ .+.+++|++||
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999998889999999999999999999999999 999999999993 57899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHHh
Q 028421 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (209)
Q Consensus 123 ~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~~ 202 (209)
..|.++++..+|..|..++++|+|+.+||+|+||||+|++|++++|||+|++||++|+|+|+|+.++.++.|+|||||.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred cCcccc
Q 028421 203 LKVIKL 208 (209)
Q Consensus 203 L~Vk~I 208 (209)
|||++|
T Consensus 151 lkvenI 156 (276)
T KOG1578|consen 151 LKVENI 156 (276)
T ss_pred hccceE
Confidence 999998
No 6
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.5e-29 Score=215.80 Aligned_cols=92 Identities=40% Similarity=0.664 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccch
Q 028421 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (209)
Q Consensus 113 ~~le~Ll~GN~rF~~~~~~~~p~~~~~La-~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~ 191 (209)
..+++|++||++|+++.+..++.+|+.++ ++|+|+++|||||||||++|.+||.+|||+||+||+||+|+++| .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999999888889998766 56999999999999999999999999999999999999999875 36
Q ss_pred hHHHHHHHHHhcCcccc
Q 028421 192 VGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 192 v~ASLEYAV~~L~Vk~I 208 (209)
+++||||||.+|||++|
T Consensus 78 ~l~sleyAv~~L~v~~I 94 (207)
T COG0288 78 VLRSLEYAVYVLGVKEI 94 (207)
T ss_pred hhHHHHHHHHHcCCCEE
Confidence 99999999999999998
No 7
>PRK15219 carbonic anhydrase; Provisional
Probab=99.95 E-value=1.3e-28 Score=216.35 Aligned_cols=93 Identities=25% Similarity=0.323 Sum_probs=82.9
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhH---HhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCC
Q 028421 108 DTKAFDSVERIKEGFIHFKREKYEKNPALY---SELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (209)
Q Consensus 108 ~~~p~~~le~Ll~GN~rF~~~~~~~~p~~~---~~La~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~ 184 (209)
..+|.+++++|++||+||+++.+.. ++++ .++++||+|+++||+||||||+||.|||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~~-~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPAQ-HDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcCC-chhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 3679999999999999999988753 4433 2467999999999999999999999999999999999999999975
Q ss_pred CCCccchhHHHHHHHHHhcCcccc
Q 028421 185 DQTKYAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 185 d~~~~~~v~ASLEYAV~~L~Vk~I 208 (209)
++.+||||||.+|||++|
T Consensus 128 ------~~~~slEyAv~~L~v~~I 145 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVV 145 (245)
T ss_pred ------chhhHHHHHHHHcCCCEE
Confidence 278999999999999997
No 8
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.95 E-value=1.6e-28 Score=206.00 Aligned_cols=83 Identities=43% Similarity=0.700 Sum_probs=78.9
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHH
Q 028421 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (209)
Q Consensus 122 N~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~ 201 (209)
|++|+++.+..++++|++++++|+|+++|||||||||+|+.|||.+|||+||+||+||+|+++|. ++.+||||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998764 48899999999
Q ss_pred hcCcccc
Q 028421 202 HLKVIKL 208 (209)
Q Consensus 202 ~L~Vk~I 208 (209)
+|||++|
T Consensus 77 ~L~v~~I 83 (182)
T cd00883 77 VLKVKHI 83 (182)
T ss_pred hcCCCEE
Confidence 9999997
No 9
>PRK10437 carbonic anhydrase; Provisional
Probab=99.95 E-value=3.6e-28 Score=210.69 Aligned_cols=91 Identities=33% Similarity=0.556 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccchhH
Q 028421 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (209)
Q Consensus 114 ~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ 193 (209)
.+++|++||++|++..+..++++|++++++|+|+++|||||||||+|+.|||.+|||+||+||+||+|+++|. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 4889999999999998888899999999999999999999999999999999999999999999999998764 488
Q ss_pred HHHHHHHHhcCcccc
Q 028421 194 AAVEYAVLHLKVIKL 208 (209)
Q Consensus 194 ASLEYAV~~L~Vk~I 208 (209)
++|||||.+|||++|
T Consensus 79 ~~leyAV~~L~v~~I 93 (220)
T PRK10437 79 SVVQYAVDVLEVEHI 93 (220)
T ss_pred HHHHHHHHHcCCCEE
Confidence 999999999999997
No 10
>PLN02154 carbonic anhydrase
Probab=99.95 E-value=1.3e-27 Score=214.30 Aligned_cols=99 Identities=45% Similarity=0.784 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCc
Q 028421 109 TKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTK 188 (209)
Q Consensus 109 ~~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~ 188 (209)
....+.+++|++||.+|+.+.+..++++|++++.||+|+++||+||||||+|+.|||.+|||+||+||+||+|++++.+
T Consensus 70 ~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g- 148 (290)
T PLN02154 70 ETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG- 148 (290)
T ss_pred chhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-
Confidence 3445789999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred cchhHHHHHHHHHhcCcccc
Q 028421 189 YAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 189 ~~~v~ASLEYAV~~L~Vk~I 208 (209)
..++.++|||||.+|||++|
T Consensus 149 ~~~~~aslEyAv~~L~v~~I 168 (290)
T PLN02154 149 PTETNSALEFAVTTLQVENI 168 (290)
T ss_pred ccchhhHHHHHHHHhCCCEE
Confidence 24689999999999999997
No 11
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.94 E-value=7.5e-28 Score=203.95 Aligned_cols=88 Identities=52% Similarity=0.902 Sum_probs=81.4
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCC-ccchhHHHHHHH
Q 028421 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (209)
Q Consensus 121 GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~-~~~~v~ASLEYA 199 (209)
||++|++..+..++++|+++++||+|+++||+||||||+|+.|||.+|||+||+||+||+|++++.+ .+.++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999888889999999999999999999999999999999999999999999999999987531 235689999999
Q ss_pred HHhcCcccc
Q 028421 200 VLHLKVIKL 208 (209)
Q Consensus 200 V~~L~Vk~I 208 (209)
|.+|||++|
T Consensus 81 v~~l~v~~i 89 (190)
T cd00884 81 VAVLKVEHI 89 (190)
T ss_pred HHHhCCCEE
Confidence 999999997
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.94 E-value=6.8e-27 Score=192.98 Aligned_cols=91 Identities=42% Similarity=0.522 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCC
Q 028421 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (209)
Q Consensus 111 p~~~le~Ll~GN~rF~~~~~~~---~p~~~~~La~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~ 187 (209)
|++++++|++||++|.++.... +++.|.+++++|+|+++|||||||||+|+.+||.+|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5688999999999999876421 255688899999999999999999999999999999999999999999986
Q ss_pred ccchhHHHHHHHHHhcCcccc
Q 028421 188 KYAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 188 ~~~~v~ASLEYAV~~L~Vk~I 208 (209)
++.++|||||.+|||++|
T Consensus 77 ---~~~~sl~yav~~l~v~~I 94 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLV 94 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEE
Confidence 378999999999999987
No 13
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.85 E-value=8.1e-22 Score=155.44 Aligned_cols=61 Identities=51% Similarity=0.852 Sum_probs=57.9
Q ss_pred CCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHHhcCcccc
Q 028421 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 144 Q~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~~L~Vk~I 208 (209)
|+|+++||||||||++|+.+||++|||+||+||+||+|+++| .+++++||||+.+|||++|
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~i 61 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHI 61 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEE
Confidence 799999999999999999999999999999999999999875 3589999999999999987
No 14
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.79 E-value=4.1e-20 Score=148.51 Aligned_cols=57 Identities=47% Similarity=0.821 Sum_probs=48.4
Q ss_pred EEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHHhcCcccc
Q 028421 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 148 alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~~L~Vk~I 208 (209)
++||||||||++|+.+||.++||+||+||+||+|++++ .+++++||||+.+|||++|
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~I 57 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEI 57 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEE
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEE
Confidence 58999999999999999999999999999999999874 4689999999999999987
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.78 E-value=1.2e-19 Score=146.71 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=54.5
Q ss_pred CCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHHhcCcccc
Q 028421 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVIKL 208 (209)
Q Consensus 144 Q~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~~L~Vk~I 208 (209)
++++++||+||||||+|+.+||++|||+||+||+||+|++ ++++|||||+.+||+++|
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~I 58 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREI 58 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEE
Confidence 3679999999999999999999999999999999999986 378999999999999987
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.00074 Score=61.14 Aligned_cols=65 Identities=34% Similarity=0.551 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccc----------------cCCCCCceEEEeecCccC
Q 028421 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (209)
Q Consensus 118 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~I----------------fg~~pGD~FVvRNaGNiV 181 (209)
|+.|..+|+...... +-.++...++|.+..++|+|+|.-|..- +..+.||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 677888888876532 2356777899999999999999998766 677899999999999999
Q ss_pred CCCC
Q 028421 182 PPYD 185 (209)
Q Consensus 182 pp~d 185 (209)
+...
T Consensus 80 ~~p~ 83 (276)
T KOG1578|consen 80 PNPT 83 (276)
T ss_pred CChh
Confidence 9753
No 17
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=51.90 E-value=13 Score=31.83 Aligned_cols=63 Identities=25% Similarity=0.294 Sum_probs=35.9
Q ss_pred ccceeecccccccccccccCcCCceeEeeccCC-CCCCCc------ccC---CccccCCCCccCcchhHHhhh
Q 028421 6 INNWCLTSVSQAQSSLIKSSTLRPSIVARLNSP-ASPPSL------IRN---EPVFAAPAPIINPNWREDMAN 68 (209)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~---~~~~~~~~p~~~p~~~~~m~~ 68 (209)
-|...++|.||.++.+.--....|.+.-.-.++ ..+|.. --- -+-.+++.|||+|.+++.|+.
T Consensus 77 s~rsSlsS~SP~~SP~q~~~~~~~~~sl~~~s~~~~~p~~~~~~~~klhqpsa~R~RnaIpIVNP~Tgm~vsS 149 (165)
T PF14618_consen 77 SNRSSLSSNSPSSSPTQHQIQPTPSFSLSSASPPFQPPRYTQQNNLKLHQPSAPRTRNAIPIVNPSTGMRVSS 149 (165)
T ss_pred cCccccccCCCCCCccccccccCCCcccCCCCCCcCCCcccccccccccCCccccccCccceeCCCCCCccCC
Confidence 344678888888777663233334333222221 113333 111 234568999999999877764
No 18
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=43.08 E-value=50 Score=24.48 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=20.8
Q ss_pred hhhccHHHHHHHHHHHhh--hhcCchhHHHHhHH
Q 028421 66 MANQSYEEAIEALKKLLK--EKEDLKPVAAAKVE 97 (209)
Q Consensus 66 m~~~~~~~a~~~l~~ll~--~~~~l~~~aa~ki~ 97 (209)
|...+||+|+++|..++. |++++...-+.+..
T Consensus 1 m~~~~fEeal~~LE~IV~~LE~g~l~Leesl~ly 34 (75)
T PRK14066 1 MAVEKFETALKKLEEVVKKLEGGELSLDDSLKAF 34 (75)
T ss_pred CccccHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 667789999999887663 34455544444443
No 19
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=42.48 E-value=92 Score=25.29 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=31.8
Q ss_pred cCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHHhcC
Q 028421 131 EKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (209)
Q Consensus 131 ~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~~L~ 204 (209)
.=||.+|++..-.+=| ++|+.|.+..+..+.. ..+++-.++. ||+ +|+||++++.
T Consensus 58 ~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v~--Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 58 QIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVVY--GNV--------------SLKGALEKMA 112 (130)
T ss_pred EEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEEE--ecc--------------cHHHHHHHHH
Confidence 3479999987665555 5667777764443322 2444443333 553 5777776553
No 20
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=40.38 E-value=15 Score=21.62 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=13.1
Q ss_pred CCCcccCCccccCCCCcc
Q 028421 41 PPSLIRNEPVFAAPAPII 58 (209)
Q Consensus 41 ~~~~~~~~~~~~~~~p~~ 58 (209)
.|..++-+||..||.|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 566777788888887754
No 21
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=33.87 E-value=32 Score=32.46 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=29.4
Q ss_pred ccccCCCCCceEEEeecCccCCCCCCCccchhHHHHHHHHHhcCccccC
Q 028421 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVIKLN 209 (209)
Q Consensus 161 e~Ifg~~pGD~FVvRNaGNiVpp~d~~~~~~v~ASLEYAV~~L~Vk~I~ 209 (209)
..+.++++|| .|+.|.||- +|..++--=+.+||.+.||
T Consensus 153 ~dfv~L~~GD-~vIQNganS----------~VG~~ViQlaka~Giktin 190 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANS----------GVGQAVIQLAKALGIKTIN 190 (354)
T ss_pred HHHHhcCCCC-eeeecCccc----------HHHHHHHHHHHHhCcceEE
Confidence 4557889999 999999994 4665666667889988886
No 22
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.06 E-value=1.1e+02 Score=22.64 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=12.0
Q ss_pred hccHHHHHHHHHHHh
Q 028421 68 NQSYEEAIEALKKLL 82 (209)
Q Consensus 68 ~~~~~~a~~~l~~ll 82 (209)
+.|||+|+++|..++
T Consensus 5 ~~sfEeal~~Le~IV 19 (76)
T PRK14068 5 TQSFEEMMQELEQIV 19 (76)
T ss_pred ccCHHHHHHHHHHHH
Confidence 458999999888755
No 23
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=28.26 E-value=79 Score=24.93 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=22.9
Q ss_pred cccccccccccccCc--CCceeEeeccCCCCCCCcccCCccccCCCCccCcchhHHhh
Q 028421 12 TSVSQAQSSLIKSST--LRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (209)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~m~ 67 (209)
+..+.+-|-+||.+. ++.--+| -|=||+|.|- ++.|.+-|.|.
T Consensus 6 A~~taSISELKKNP~~~~~g~PVA---------ILNhN~PafY----~Vpa~~yE~m~ 50 (97)
T PRK09778 6 AEKSVNITELRKNPAKYFIDQPVA---------VLSNNRPAGY----LLSASAFEALM 50 (97)
T ss_pred hhhhccHHHHhhCHHHHhcCCceE---------EecCCceeEE----EeCHHHHHHHH
Confidence 334445577888544 3322223 3448999886 34444434444
No 24
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.56 E-value=1.4e+02 Score=22.13 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHHHh
Q 028421 69 QSYEEAIEALKKLL 82 (209)
Q Consensus 69 ~~~~~a~~~l~~ll 82 (209)
.+||+|+.+|..++
T Consensus 6 ~sfEe~l~~LE~IV 19 (75)
T PRK14064 6 KTFEEAIAELETIV 19 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 37999999887755
No 25
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.14 E-value=1.9e+02 Score=22.36 Aligned_cols=65 Identities=28% Similarity=0.359 Sum_probs=36.9
Q ss_pred hhhccHHHHHHHHHHHhhhhc--CchhHHHHhHHHHHHhhcCC---------CCCChHHHHHHHHHHHHHHHhhhc
Q 028421 66 MANQSYEEAIEALKKLLKEKE--DLKPVAAAKVEQITAQLQTP---------SDTKAFDSVERIKEGFIHFKREKY 130 (209)
Q Consensus 66 m~~~~~~~a~~~l~~ll~~~~--~l~~~aa~ki~~lt~el~~~---------~~~~p~~~le~Ll~GN~rF~~~~~ 130 (209)
+....+++|++.|++++.... .+...|.-++-.+--+.+.- ....++.++-..+.|...+..+.+
T Consensus 59 ~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 59 YEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCH
Confidence 446779999999999998663 44445555444443333221 012334445555566665555544
No 26
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.04 E-value=1.4e+02 Score=26.65 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=35.1
Q ss_pred cccCCCCccCcchhHHhhhccHHHHHHHHHHHhhhhcCchhHHHHhHHHHHHhhcC
Q 028421 50 VFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQT 105 (209)
Q Consensus 50 ~~~~~~p~~~p~~~~~m~~~~~~~a~~~l~~ll~~~~~l~~~aa~ki~~lt~el~~ 105 (209)
+++||+|+ .+....|.++-+.+|.+.+.........=..+|+.+..|+..
T Consensus 23 ~~~a~a~v------~~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~ 72 (263)
T PRK10803 23 AAFAQAPI------SSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDS 72 (263)
T ss_pred HHhcCCcH------HHcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 56688888 345567778888888888866665555566777777666654
Done!