Query 028423
Match_columns 209
No_of_seqs 151 out of 1793
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 11:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15074 inosine/guanosine kin 100.0 1.5E-29 3.3E-34 227.4 21.3 183 13-201 31-229 (434)
2 PLN02379 pfkB-type carbohydrat 100.0 2.2E-28 4.7E-33 216.3 20.2 188 12-201 16-213 (367)
3 PLN02813 pfkB-type carbohydrat 100.0 2.9E-27 6.3E-32 212.8 20.6 181 13-201 67-264 (426)
4 PTZ00247 adenosine kinase; Pro 99.9 1.1E-24 2.4E-29 190.7 18.5 177 13-199 3-195 (345)
5 cd01168 adenosine_kinase Adeno 99.9 1.5E-24 3.2E-29 186.9 18.8 173 16-199 2-181 (312)
6 PRK11142 ribokinase; Provision 99.9 3E-23 6.5E-28 177.9 17.7 157 16-200 3-166 (306)
7 cd01942 ribokinase_group_A Rib 99.9 7.1E-23 1.5E-27 173.1 17.1 155 17-200 1-157 (279)
8 cd01174 ribokinase Ribokinase 99.9 8.9E-23 1.9E-27 173.5 17.6 156 17-200 1-163 (292)
9 cd01939 Ketohexokinase Ketohex 99.9 9.6E-23 2.1E-27 173.9 17.5 155 17-199 1-166 (290)
10 PTZ00292 ribokinase; Provision 99.9 2E-22 4.3E-27 174.7 17.8 163 10-200 10-181 (326)
11 PLN02323 probable fructokinase 99.9 1E-22 2.2E-27 176.9 15.5 157 12-200 7-175 (330)
12 cd01944 YegV_kinase_like YegV- 99.9 2.9E-22 6.2E-27 170.7 17.1 155 17-200 1-164 (289)
13 PLN02967 kinase 99.9 4.2E-22 9.1E-27 183.8 17.2 173 9-199 190-373 (581)
14 PLN02543 pfkB-type carbohydrat 99.9 2.2E-22 4.8E-27 183.5 14.7 167 15-200 125-305 (496)
15 COG0524 RbsK Sugar kinases, ri 99.9 1.1E-21 2.3E-26 168.9 15.7 159 17-202 1-168 (311)
16 cd01947 Guanosine_kinase_like 99.9 6.1E-21 1.3E-25 160.6 17.7 150 17-200 1-151 (265)
17 cd01945 ribokinase_group_B Rib 99.9 6.6E-21 1.4E-25 161.6 17.8 154 17-199 1-158 (284)
18 PLN02548 adenosine kinase 99.9 9.5E-21 2.1E-25 164.7 17.0 171 21-200 1-185 (332)
19 PLN02341 pfkB-type carbohydrat 99.9 5.7E-21 1.2E-25 174.0 16.0 173 11-201 68-263 (470)
20 KOG2854 Possible pfkB family c 99.9 5.9E-21 1.3E-25 162.8 14.1 156 17-181 8-170 (343)
21 PRK09850 pseudouridine kinase; 99.9 1.5E-20 3.2E-25 162.4 16.4 158 14-200 3-166 (313)
22 TIGR02152 D_ribokin_bact ribok 99.8 4.2E-20 9.1E-25 157.5 16.8 150 24-200 2-158 (293)
23 cd01166 KdgK 2-keto-3-deoxyglu 99.8 1.7E-20 3.8E-25 159.4 14.4 151 17-200 1-164 (294)
24 cd01940 Fructoselysine_kinase_ 99.8 2.9E-20 6.3E-25 156.2 15.0 124 75-200 18-146 (264)
25 KOG2855 Ribokinase [Carbohydra 99.8 1.3E-20 2.8E-25 161.9 13.0 165 13-205 7-175 (330)
26 cd01167 bac_FRK Fructokinases 99.8 6.7E-20 1.5E-24 156.1 16.0 148 17-200 1-159 (295)
27 cd01941 YeiC_kinase_like YeiC- 99.8 4.4E-20 9.5E-25 156.7 14.8 154 17-199 1-161 (288)
28 TIGR03828 pfkB 1-phosphofructo 99.8 6.4E-20 1.4E-24 157.0 15.0 148 21-200 4-165 (304)
29 PRK09813 fructoselysine 6-kina 99.8 6.9E-20 1.5E-24 154.1 14.5 142 16-200 1-144 (260)
30 PRK09954 putative kinase; Prov 99.8 3.9E-19 8.5E-24 156.7 17.3 156 16-201 58-220 (362)
31 cd01172 RfaE_like RfaE encodes 99.8 9.1E-19 2E-23 149.8 15.8 159 17-201 1-173 (304)
32 PF00294 PfkB: pfkB family car 99.8 2.9E-19 6.3E-24 152.1 11.9 133 16-178 2-135 (301)
33 TIGR02198 rfaE_dom_I rfaE bifu 99.8 2.4E-18 5.3E-23 148.2 17.0 160 14-200 6-181 (315)
34 PRK09513 fruK 1-phosphofructok 99.8 2.1E-18 4.6E-23 148.8 16.5 151 18-200 5-169 (312)
35 PRK09434 aminoimidazole ribosi 99.8 1.7E-18 3.6E-23 148.6 15.6 145 15-200 2-158 (304)
36 PRK10294 6-phosphofructokinase 99.8 2E-18 4.3E-23 148.8 15.0 152 18-200 4-168 (309)
37 cd01164 FruK_PfkB_like 1-phosp 99.8 6.2E-18 1.3E-22 144.1 14.3 149 19-200 4-166 (289)
38 PRK13508 tagatose-6-phosphate 99.8 1E-17 2.2E-22 144.3 15.4 143 24-200 8-164 (309)
39 PRK11316 bifunctional heptose 99.8 1.1E-17 2.4E-22 152.3 16.2 162 14-200 9-179 (473)
40 cd01943 MAK32 MAK32 kinase. M 99.8 1.8E-18 3.9E-23 150.8 9.9 145 17-201 1-163 (328)
41 TIGR01231 lacC tagatose-6-phos 99.8 1.1E-17 2.3E-22 144.2 14.0 146 24-200 7-164 (309)
42 TIGR03168 1-PFK hexose kinase, 99.8 1.6E-17 3.4E-22 142.5 14.4 145 24-200 7-165 (303)
43 cd01937 ribokinase_group_D Rib 99.7 3.3E-16 7.2E-21 131.0 15.0 136 17-200 1-136 (254)
44 KOG2947 Carbohydrate kinase [C 99.7 7.3E-16 1.6E-20 126.8 12.7 158 14-199 3-172 (308)
45 PLN02630 pfkB-type carbohydrat 99.7 2.6E-15 5.7E-20 131.5 14.4 141 12-201 8-162 (335)
46 cd01946 ribokinase_group_C Rib 99.5 8E-14 1.7E-18 118.2 12.0 120 74-199 20-145 (277)
47 COG2870 RfaE ADP-heptose synth 99.4 1E-12 2.2E-17 115.2 11.3 163 14-203 9-182 (467)
48 COG1105 FruK Fructose-1-phosph 99.4 4.9E-12 1.1E-16 108.8 12.1 145 24-200 8-167 (310)
49 cd00287 ribokinase_pfkB_like r 99.1 4.2E-10 9.1E-15 89.8 10.7 89 17-202 1-94 (196)
50 KOG3009 Predicted carbohydrate 97.7 7.3E-05 1.6E-09 67.3 6.0 76 12-115 337-412 (614)
51 PRK14039 ADP-dependent glucoki 95.3 0.48 1E-05 43.4 12.8 26 73-99 85-110 (453)
52 PRK06702 O-acetylhomoserine am 88.5 9.9 0.00021 34.7 12.0 118 53-206 63-191 (432)
53 cd01938 ADPGK_ADPPFK ADP-depen 86.7 7.5 0.00016 35.7 10.1 33 73-106 100-133 (445)
54 PRK08133 O-succinylhomoserine 84.2 21 0.00045 31.9 11.7 67 54-126 64-131 (390)
55 PRK05967 cystathionine beta-ly 83.7 19 0.00041 32.5 11.2 121 54-209 67-196 (395)
56 PRK08114 cystathionine beta-ly 82.0 24 0.00052 31.8 11.2 68 53-126 64-132 (395)
57 PRK05968 hypothetical protein; 78.1 45 0.00098 29.7 11.7 112 54-204 66-189 (389)
58 TIGR01325 O_suc_HS_sulf O-succ 77.8 50 0.0011 29.3 11.8 114 54-205 57-182 (380)
59 PRK09028 cystathionine beta-ly 77.8 38 0.00083 30.5 11.1 116 54-207 64-191 (394)
60 PF01053 Cys_Met_Meta_PP: Cys/ 76.9 31 0.00067 31.0 10.2 121 54-209 58-188 (386)
61 PRK05939 hypothetical protein; 76.8 47 0.001 29.8 11.4 112 54-203 50-172 (397)
62 PRK07582 cystathionine gamma-l 76.7 47 0.001 29.3 11.3 68 54-128 54-122 (366)
63 PRK08249 cystathionine gamma-s 76.0 39 0.00085 30.3 10.7 24 182-205 169-192 (398)
64 PRK08574 cystathionine gamma-s 75.8 58 0.0013 29.0 12.0 112 53-203 55-178 (385)
65 TIGR01328 met_gam_lyase methio 74.6 54 0.0012 29.2 11.2 22 182-203 164-185 (391)
66 PRK03979 ADP-specific phosphof 74.5 29 0.00063 32.1 9.4 82 14-104 11-128 (463)
67 cd00614 CGS_like CGS_like: Cys 74.1 56 0.0012 28.7 11.1 114 54-203 43-166 (369)
68 PRK05613 O-acetylhomoserine am 73.5 61 0.0013 29.6 11.4 22 182-203 175-196 (437)
69 PRK07810 O-succinylhomoserine 72.4 73 0.0016 28.6 12.0 115 54-203 73-196 (403)
70 PRK07504 O-succinylhomoserine 72.4 61 0.0013 29.0 11.0 35 170-204 150-192 (398)
71 PRK07050 cystathionine beta-ly 70.7 71 0.0015 28.5 11.0 67 54-126 68-135 (394)
72 PRK08248 O-acetylhomoserine am 70.1 83 0.0018 28.6 11.4 110 54-201 67-188 (431)
73 PRK08134 O-acetylhomoserine am 69.7 82 0.0018 28.6 11.3 20 182-201 169-188 (433)
74 TIGR01326 OAH_OAS_sulfhy OAH/O 69.4 83 0.0018 28.3 11.2 112 54-203 60-183 (418)
75 PLN02242 methionine gamma-lyas 67.8 62 0.0013 29.2 10.1 37 171-208 164-208 (418)
76 COG0626 MetC Cystathionine bet 64.7 1.1E+02 0.0024 27.7 12.1 65 53-127 65-134 (396)
77 TIGR02045 P_fruct_ADP ADP-spec 63.6 1E+02 0.0022 28.4 10.5 40 74-119 84-125 (446)
78 PRK08861 cystathionine gamma-s 62.9 1.1E+02 0.0025 27.3 11.5 116 53-205 55-181 (388)
79 PRK05994 O-acetylhomoserine am 62.7 1.2E+02 0.0026 27.4 11.8 34 170-203 148-189 (427)
80 PRK08247 cystathionine gamma-s 62.7 1.1E+02 0.0023 26.9 11.7 20 182-201 156-175 (366)
81 TIGR01324 cysta_beta_ly_B cyst 59.3 1.3E+02 0.0028 26.7 11.3 63 54-125 53-119 (377)
82 TIGR01329 cysta_beta_ly_E cyst 58.8 1.3E+02 0.0028 26.6 11.6 32 170-201 131-170 (378)
83 PF01118 Semialdhyde_dh: Semia 56.2 25 0.00055 25.7 4.5 90 100-200 2-97 (121)
84 PRK06234 methionine gamma-lyas 55.6 1.5E+02 0.0033 26.4 11.4 67 54-126 67-134 (400)
85 PF04587 ADP_PFK_GK: ADP-speci 55.5 12 0.00027 34.2 3.3 58 47-116 69-128 (444)
86 PF00070 Pyr_redox: Pyridine n 52.1 33 0.00071 22.9 4.3 44 81-125 10-59 (80)
87 PRK07811 cystathionine gamma-s 49.6 1.9E+02 0.0041 25.7 10.4 33 170-202 146-186 (388)
88 PRK06767 methionine gamma-lyas 48.2 2E+02 0.0043 25.5 10.9 20 182-201 166-185 (386)
89 PRK06084 O-acetylhomoserine am 45.1 2.4E+02 0.0051 25.5 10.3 36 170-205 143-186 (425)
90 PLN02509 cystathionine beta-ly 43.8 2.6E+02 0.0057 25.7 10.9 34 170-203 217-258 (464)
91 PRK07812 O-acetylhomoserine am 42.3 2.7E+02 0.0058 25.4 11.2 32 170-201 155-194 (436)
92 PRK14038 ADP-dependent glucoki 42.3 2.8E+02 0.0062 25.6 11.5 31 73-105 104-134 (453)
93 PRK14106 murD UDP-N-acetylmura 41.5 1E+02 0.0022 27.7 7.0 46 75-122 10-55 (450)
94 cd00562 NifX_NifB This CD repr 41.4 57 0.0012 22.5 4.3 40 79-124 47-86 (102)
95 COG0136 Asd Aspartate-semialde 40.9 1.8E+02 0.0039 25.8 8.0 92 95-200 2-97 (334)
96 PRK07049 methionine gamma-lyas 40.2 2.8E+02 0.0061 25.0 12.4 64 54-123 86-150 (427)
97 PRK15394 4-deoxy-4-formamido-L 39.6 45 0.00097 28.9 4.1 34 82-116 20-53 (296)
98 PRK12549 shikimate 5-dehydroge 38.7 2.5E+02 0.0054 23.9 10.0 43 74-119 131-174 (284)
99 PRK07503 methionine gamma-lyas 35.7 3.2E+02 0.007 24.4 11.3 34 170-203 150-191 (403)
100 TIGR02080 O_succ_thio_ly O-suc 33.7 3.4E+02 0.0074 24.0 11.3 35 54-94 54-88 (382)
101 COG1249 Lpd Pyruvate/2-oxoglut 33.4 1.4E+02 0.0031 27.4 6.6 53 72-125 174-233 (454)
102 PRK06728 aspartate-semialdehyd 33.2 2.8E+02 0.006 24.7 8.1 90 94-200 5-99 (347)
103 cd08345 Fosfomycin_RP Fosfomyc 32.5 92 0.002 21.4 4.3 42 108-149 67-108 (113)
104 cd04868 ACT_AK-like ACT domain 31.9 1.1E+02 0.0024 17.9 5.2 33 107-139 15-47 (60)
105 cd08363 FosB FosB, a fosfomyci 31.7 78 0.0017 23.1 3.9 46 109-154 72-117 (131)
106 cd03061 GST_N_CLIC GST_N famil 31.5 38 0.00082 24.0 2.0 48 103-150 19-66 (91)
107 cd07266 HPCD_N_class_II N-term 30.7 1.4E+02 0.003 20.9 5.0 48 103-150 68-116 (121)
108 PRK07671 cystathionine beta-ly 30.4 3.8E+02 0.0083 23.6 10.3 20 182-201 154-173 (377)
109 cd04915 ACT_AK-Ectoine_2 ACT d 30.3 1.5E+02 0.0033 19.0 6.2 43 97-139 2-48 (66)
110 PF02579 Nitro_FeMo-Co: Dinitr 30.2 50 0.0011 22.5 2.5 43 76-124 36-78 (94)
111 cd00851 MTH1175 This uncharact 30.1 94 0.002 21.5 3.9 39 80-124 50-88 (103)
112 COG2893 ManX Phosphotransferas 29.8 56 0.0012 25.2 2.8 29 74-103 65-93 (143)
113 PRK05671 aspartate-semialdehyd 29.7 3.6E+02 0.0079 23.7 8.3 88 96-200 6-97 (336)
114 COG1058 CinA Predicted nucleot 29.4 1.8E+02 0.0039 24.7 6.0 47 81-130 22-68 (255)
115 PF10087 DUF2325: Uncharacteri 29.1 1.1E+02 0.0023 21.5 4.0 34 166-199 44-82 (97)
116 cd04918 ACT_AK1-AT_2 ACT domai 28.9 1.6E+02 0.0035 18.8 5.6 41 99-139 3-47 (65)
117 cd07238 Glo_EDI_BRP_like_5 Thi 28.4 1.7E+02 0.0036 20.1 5.0 42 109-150 68-109 (112)
118 PRK06327 dihydrolipoamide dehy 27.6 4.7E+02 0.01 23.8 9.2 51 73-124 185-242 (475)
119 PRK07818 dihydrolipoamide dehy 27.3 1.6E+02 0.0034 26.8 5.8 51 73-124 174-231 (466)
120 PRK06598 aspartate-semialdehyd 27.3 4E+02 0.0087 23.9 8.2 92 96-200 3-98 (369)
121 PRK06901 aspartate-semialdehyd 27.2 2.5E+02 0.0055 24.7 6.7 89 96-199 5-94 (322)
122 PRK08045 cystathionine gamma-s 26.9 4.5E+02 0.0098 23.3 11.5 35 170-204 137-179 (386)
123 cd07241 Glo_EDI_BRP_like_3 Thi 26.7 1.4E+02 0.0031 20.7 4.4 45 103-147 78-122 (125)
124 PF01041 DegT_DnrJ_EryC1: DegT 26.5 2.1E+02 0.0045 25.0 6.3 116 79-199 24-147 (363)
125 TIGR01421 gluta_reduc_1 glutat 25.2 1.9E+02 0.004 26.3 5.8 52 73-125 168-226 (450)
126 cd07242 Glo_EDI_BRP_like_6 Thi 25.2 2E+02 0.0043 20.2 5.1 43 109-151 82-127 (128)
127 PRK07269 cystathionine gamma-s 25.1 1.1E+02 0.0025 26.9 4.3 34 170-203 136-177 (364)
128 cd08364 FosX FosX, a fosfomyci 25.1 1.2E+02 0.0026 22.0 3.9 43 110-152 80-122 (131)
129 PF01973 MAF_flag10: Protein o 25.0 89 0.0019 24.1 3.3 27 75-101 135-162 (170)
130 PRK14727 putative mercuric red 25.0 1.7E+02 0.0037 26.7 5.6 51 73-124 190-246 (479)
131 PF04252 RNA_Me_trans: Predict 24.9 89 0.0019 25.5 3.3 34 143-181 61-94 (196)
132 PRK13748 putative mercuric red 24.8 1.7E+02 0.0037 27.1 5.7 51 73-124 272-328 (561)
133 PTZ00058 glutathione reductase 24.8 2E+02 0.0044 27.2 6.1 51 73-124 239-296 (561)
134 PRK11263 cardiolipin synthase 24.7 2.1E+02 0.0046 25.9 6.0 47 79-126 47-94 (411)
135 PRK03673 hypothetical protein; 24.7 2.5E+02 0.0054 25.4 6.4 47 81-130 22-68 (396)
136 PF10678 DUF2492: Protein of u 24.6 1.5E+02 0.0033 20.5 3.9 32 88-120 29-60 (78)
137 cd05803 PGM_like4 This PGM-lik 24.5 5.3E+02 0.011 23.3 9.5 23 139-162 239-261 (445)
138 KOG1372 GDP-mannose 4,6 dehydr 24.4 1.5E+02 0.0032 25.6 4.5 33 96-130 29-62 (376)
139 TIGR01745 asd_gamma aspartate- 24.2 4.3E+02 0.0094 23.7 7.7 90 96-200 2-97 (366)
140 PF06189 5-nucleotidase: 5'-nu 24.1 1.2E+02 0.0026 26.0 4.0 54 73-128 157-219 (264)
141 PLN02383 aspartate semialdehyd 24.1 3.7E+02 0.008 23.7 7.3 91 93-200 6-100 (344)
142 TIGR03853 matur_matur probable 23.7 1.6E+02 0.0034 20.3 3.8 36 84-120 23-58 (77)
143 PF12681 Glyoxalase_2: Glyoxal 23.5 2.4E+02 0.0052 18.9 5.2 39 109-147 67-105 (108)
144 cd07251 Glo_EDI_BRP_like_10 Th 23.3 2.2E+02 0.0048 19.5 4.9 42 108-150 77-119 (121)
145 cd07261 Glo_EDI_BRP_like_11 Th 23.2 1.9E+02 0.0042 19.8 4.6 46 103-149 67-112 (114)
146 PTZ00058 glutathione reductase 23.2 1.1E+02 0.0024 28.9 4.1 20 81-101 59-78 (561)
147 KOG0257 Kynurenine aminotransf 23.1 1.4E+02 0.0031 27.2 4.5 45 155-199 157-212 (420)
148 PF04016 DUF364: Domain of unk 23.1 1.8E+02 0.0039 22.2 4.6 38 161-199 53-95 (147)
149 PRK06176 cystathionine gamma-s 23.0 5.3E+02 0.012 22.8 11.3 22 182-203 154-175 (380)
150 cd07245 Glo_EDI_BRP_like_9 Thi 22.5 1.7E+02 0.0037 19.5 4.1 36 110-146 76-111 (114)
151 TIGR00177 molyb_syn molybdenum 22.3 3E+02 0.0065 20.7 5.7 45 82-129 29-73 (144)
152 cd01635 Glycosyltransferase_GT 22.2 3E+02 0.0066 20.8 5.9 31 169-199 50-82 (229)
153 PRK13384 delta-aminolevulinic 22.2 1.9E+02 0.004 25.5 4.9 113 83-199 150-273 (322)
154 PRK14694 putative mercuric red 22.2 2.1E+02 0.0047 25.9 5.7 41 82-124 190-236 (468)
155 PF13460 NAD_binding_10: NADH( 22.1 2.8E+02 0.0061 20.9 5.7 84 102-197 3-94 (183)
156 cd07247 SgaA_N_like N-terminal 22.0 2.6E+02 0.0056 19.1 5.0 39 110-148 73-111 (114)
157 PF02700 PurS: Phosphoribosylf 21.9 1.1E+02 0.0024 21.0 2.9 23 105-127 14-37 (80)
158 PF08659 KR: KR domain; Inter 21.8 1.9E+02 0.0041 22.5 4.6 51 78-129 9-61 (181)
159 cd07240 ED_TypeI_classII_N N-t 21.6 2.7E+02 0.0058 19.0 5.1 48 103-150 65-112 (117)
160 PF09140 MipZ: ATPase MipZ; I 21.2 84 0.0018 26.8 2.5 20 82-102 18-37 (261)
161 PRK08064 cystathionine beta-ly 21.1 5.8E+02 0.013 22.6 12.0 35 170-204 138-180 (390)
162 PRK13512 coenzyme A disulfide 20.8 1.7E+02 0.0037 26.3 4.7 42 82-124 160-207 (438)
163 cd04924 ACT_AK-Arch_2 ACT doma 20.5 2.2E+02 0.0048 17.5 5.8 42 98-139 2-48 (66)
164 COG1089 Gmd GDP-D-mannose dehy 20.4 1.5E+02 0.0033 26.0 3.9 39 96-136 3-44 (345)
165 PF13740 ACT_6: ACT domain; PD 20.4 1.7E+02 0.0038 19.3 3.6 33 97-129 2-36 (76)
166 PLN02507 glutathione reductase 20.3 2.7E+02 0.0059 25.7 6.0 50 74-124 206-262 (499)
167 PRK09754 phenylpropionate diox 20.0 1.8E+02 0.004 25.6 4.6 42 82-124 156-204 (396)
No 1
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.97 E-value=1.5e-29 Score=227.38 Aligned_cols=183 Identities=21% Similarity=0.336 Sum_probs=161.6
Q ss_pred CCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHh
Q 028423 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (209)
Q Consensus 13 ~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~r 92 (209)
..+-+|+++| |++||+.+.|+++||+++..++|.+++++.++..+|+++|..+. ......+||+++|+|++++ |
T Consensus 31 ~~~~~v~g~G-NaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~----~~~~~~~GGsaaNtA~~lA-r 104 (434)
T PRK15074 31 TSRTYIVGID-QTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNN----LITHEFAGGTIGNTLHNYS-V 104 (434)
T ss_pred CCCCcEEEeC-CceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhcc----ccccccCCCHHHHHHHHHH-H
Confidence 3456799999 99999999999999999999999999999999999999886421 1146679999999999999 8
Q ss_pred cC-CCeEEEEEecCC-hhHHHHHHHHH--hCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhc
Q 028423 93 FG-VPCGLIGAYGDD-QQGQLFVSNMQ--FSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV 168 (209)
Q Consensus 93 LG-~~~~lig~VG~D-~~G~~i~~~L~--~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i 168 (209)
|| .++.|+|+||+| .+|+++++.|+ +.||+++++...+++|+.|+++++++|+|+|+++++++..+++++++.+.+
T Consensus 105 LGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~~~i 184 (434)
T PRK15074 105 LADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQLRPESIPEDVI 184 (434)
T ss_pred cCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhcCChhHCCHhHh
Confidence 96 999999999999 79999999997 689999998766668999999999999999999999999999999988889
Q ss_pred CCccEEEEeCCccH------------HHHHHHHhcCCeEEEecCc
Q 028423 169 KGSKVLHLALYLKK------------LLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 169 ~~~d~v~i~g~~~~------------~~~~~ar~~g~~vsfd~~~ 201 (209)
++++++|++||.+. ..++.||++|++|+||-..
T Consensus 185 ~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~ 229 (434)
T PRK15074 185 AGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGT 229 (434)
T ss_pred ccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcc
Confidence 99999999998632 2456789999999999754
No 2
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.96 E-value=2.2e-28 Score=216.34 Aligned_cols=188 Identities=70% Similarity=1.050 Sum_probs=163.5
Q ss_pred cCCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccC---CCCCCceEecCchHHHHHHH
Q 028423 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHIL---DEPSPIKTIAGGSVTNTIRG 88 (209)
Q Consensus 12 ~~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~GG~a~N~A~~ 88 (209)
...+++|+++|+|++||+.+.++++||+++..++|.+++++.++.++|+++|..+.. ++.......+||+++|++++
T Consensus 16 ~~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~ 95 (367)
T PLN02379 16 GPRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRG 95 (367)
T ss_pred CCCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHH
Confidence 346778999988999999999999999999999999999999999999999875321 01124778899999999999
Q ss_pred HHHh-cCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhh
Q 028423 89 LSVG-FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAED 167 (209)
Q Consensus 89 la~r-LG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~ 167 (209)
++ + ||.++.|+|+||+|.+|+++++.|++.||+++++...+++|+.|+++++++|+|++..+.++...+++++++.+.
T Consensus 96 la-~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~~~ 174 (367)
T PLN02379 96 LS-AGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTKED 174 (367)
T ss_pred HH-HhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccccCChhHCCHHH
Confidence 98 6 999999999999999999999999999999988866567899999999999999998888887888888888888
Q ss_pred cCCccEEEEeCCcc------HHHHHHHHhcCCeEEEecCc
Q 028423 168 VKGSKVLHLALYLK------KLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 168 i~~~d~v~i~g~~~------~~~~~~ar~~g~~vsfd~~~ 201 (209)
+++++++|++ |.+ ...++.||++|++|+||...
T Consensus 175 ~~~~~~v~v~-~~~~~~~~~~~~~~~A~~~g~~v~lD~s~ 213 (367)
T PLN02379 175 FKGSKWLVLR-YGFYNLEVIEAAIRLAKQEGLSVSLDLAS 213 (367)
T ss_pred HhcCCEEEEE-cccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 9999999999 532 23556789999999999853
No 3
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.96 E-value=2.9e-27 Score=212.79 Aligned_cols=181 Identities=24% Similarity=0.344 Sum_probs=159.8
Q ss_pred CCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHh
Q 028423 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (209)
Q Consensus 13 ~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~r 92 (209)
.-+.+|+++| ++++|+++.++..|++++..|+++.++++.++..++++++.. ..+...+||+++|+|++|+ |
T Consensus 67 ~~~~~vl~iG-~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~------~~~~~~~GG~~~N~Avala-r 138 (426)
T PLN02813 67 PERWDVLGLG-QAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDG------CSYKASAGGSLSNTLVALA-R 138 (426)
T ss_pred CCcceEEEeC-CceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhc------cCceEecCcHHHHHHHHHH-H
Confidence 3467899999 999999999999999998888899999999999899888754 3678999999999999999 8
Q ss_pred cC--------CCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccc
Q 028423 93 FG--------VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI 164 (209)
Q Consensus 93 LG--------~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~ 164 (209)
|| .++.|+|.||+|.+|+++++.|++.||++.++.+.+++|+.++++++++|+|+++.+++++..++++++.
T Consensus 139 LG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~ 218 (426)
T PLN02813 139 LGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCL 218 (426)
T ss_pred hccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCchhhCCccccC
Confidence 99 7999999999999999999999999999998876567899999999999999999999888778777777
Q ss_pred hhhcCCccEEEEeCCcc---------HHHHHHHHhcCCeEEEecCc
Q 028423 165 AEDVKGSKVLHLALYLK---------KLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 165 ~~~i~~~d~v~i~g~~~---------~~~~~~ar~~g~~vsfd~~~ 201 (209)
.+.+++++++|++++.+ ...++.||++|++|+||...
T Consensus 219 ~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~ 264 (426)
T PLN02813 219 ASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASD 264 (426)
T ss_pred HHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCC
Confidence 77899999999998652 12456789999999998654
No 4
>PTZ00247 adenosine kinase; Provisional
Probab=99.93 E-value=1.1e-24 Score=190.68 Aligned_cols=177 Identities=24% Similarity=0.320 Sum_probs=144.7
Q ss_pred CCCCeEEEecCceeEEEEeecCHHHHhhC-CCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHH
Q 028423 13 SQAALILGLQPAALIDHVARVDWSLLDQI-PGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (209)
Q Consensus 13 ~~~~~Il~iG~~~~vD~i~~v~~~~l~~~-p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~ 91 (209)
+.+++|+++| ++++|+++.++++|+.++ |. +|...+.+ +...++..+.... ......+||+++|+|++++
T Consensus 3 ~~~~~i~~iG-~~~~D~~~~v~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~-----~~~~~~~GG~~~N~A~~la- 73 (345)
T PTZ00247 3 SAPKKLLGFG-NPLLDISAHVSDEFLEKYGLE-LGSAILAE-EKQLPIFEELESI-----PNVSYVPGGSALNTARVAQ- 73 (345)
T ss_pred CCCceEEEEC-CceEEEEEeeCHHHHHHcCCC-CCceeech-HHHHHHHHHHHhc-----cCceecCCCHHHHHHHHHH-
Confidence 5678999999 999999999998888886 64 56665654 3344444443321 3578999999999999999
Q ss_pred hcC---C-CeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccch--
Q 028423 92 GFG---V-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-- 165 (209)
Q Consensus 92 rLG---~-~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~-- 165 (209)
||| . ++.|+|+||+|.+|+++++.|++.|||++++...+.+|+.++++++ +|+|+++.+++++..+++++++.
T Consensus 74 ~lg~~g~~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~-~~~r~~~~~~ga~~~l~~~~i~~~~ 152 (345)
T PTZ00247 74 WMLQAPKGFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVC-GKERSLVANLGAANHLSAEHMQSHA 152 (345)
T ss_pred HHhcCCCCcEEEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEc-CCCcccccCcchhhcCChHHcCcHH
Confidence 786 5 9999999999999999999999999999887643568999999987 48999999999888888887764
Q ss_pred --hhcCCccEEEEeCCcc-------HHHHHHHHhcCCeEEEec
Q 028423 166 --EDVKGSKVLHLALYLK-------KLLFNLARDSLSSFSFYS 199 (209)
Q Consensus 166 --~~i~~~d~v~i~g~~~-------~~~~~~ar~~g~~vsfd~ 199 (209)
+.+++++++|++++.+ ...++.||++|++|+||.
T Consensus 153 ~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~ 195 (345)
T PTZ00247 153 VQEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNL 195 (345)
T ss_pred HHHHHhhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEEC
Confidence 2688999999999742 234577899999999994
No 5
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.93 E-value=1.5e-24 Score=186.90 Aligned_cols=173 Identities=34% Similarity=0.508 Sum_probs=142.5
Q ss_pred CeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC
Q 028423 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~ 95 (209)
.+|+++| ++++|+++.++...+.......|...+.+.+...+.... .+....+||+++|+|++|+ |||.
T Consensus 2 ~~v~~vG-~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~GG~~~N~A~~la-~LG~ 70 (312)
T cd01168 2 YDVLGLG-NALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAK---------LPVKYIAGGSAANTIRGAA-ALGG 70 (312)
T ss_pred ceEEEEC-CCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHh---------cCccccCCCHHHHHHHHHH-HhcC
Confidence 4699999 999999999955444443334466666554444444321 1468889999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEE
Q 028423 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLH 175 (209)
Q Consensus 96 ~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~ 175 (209)
++.|+|.||+|.+|+.+++.|++.||+++++...+.+|+.++++++++|+|+++.++++...+++++++.+.++++|++|
T Consensus 71 ~~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 150 (312)
T cd01168 71 SAAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDWSLLAKAKYLY 150 (312)
T ss_pred CeEEEEEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCHHHHccCCEEE
Confidence 99999999999999999999999999999887655689999999998999999999888888998888888899999999
Q ss_pred EeCCcc-------HHHHHHHHhcCCeEEEec
Q 028423 176 LALYLK-------KLLFNLARDSLSSFSFYS 199 (209)
Q Consensus 176 i~g~~~-------~~~~~~ar~~g~~vsfd~ 199 (209)
++++.+ ...++.+|++|++|+||.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~ 181 (312)
T cd01168 151 LEGYLLTVPPEAILLAAEHAKENGVKIALNL 181 (312)
T ss_pred EEEEecCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 998742 234567788999999996
No 6
>PRK11142 ribokinase; Provisional
Probab=99.91 E-value=3e-23 Score=177.89 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=133.0
Q ss_pred CeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC
Q 028423 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~ 95 (209)
.+|+++| .+++|+++.+ +++|.++... .. .+....+||++.|+|++|+ |||.
T Consensus 3 ~~i~~iG-~~~~D~~~~~-----~~~p~~~~~~-~~--------------------~~~~~~~GG~~~Nva~~la-~lG~ 54 (306)
T PRK11142 3 GKLVVLG-SINADHVLNL-----ESFPRPGETL-TG--------------------RHYQVAFGGKGANQAVAAA-RLGA 54 (306)
T ss_pred CcEEEEC-CceeeEEEEe-----CCCCCCCCee-Ee--------------------ccceecCCCcHHHHHHHHH-hcCC
Confidence 3699999 9999999999 7788653221 11 2678889999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEeeccccccCCCccccch--hhcCCcc
Q 028423 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGSK 172 (209)
Q Consensus 96 ~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~--~~i~~~d 172 (209)
++.++|.+|+|.+|+.+++.|++.||+++++...+ .+|+.++++++++|+|+++.++++...+++++++. +.+++++
T Consensus 55 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (306)
T PRK11142 55 DIAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANAD 134 (306)
T ss_pred cEEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999998765 47999999999899999998888877788776653 5689999
Q ss_pred EEEEeCCccH----HHHHHHHhcCCeEEEecC
Q 028423 173 VLHLALYLKK----LLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 173 ~v~i~g~~~~----~~~~~ar~~g~~vsfd~~ 200 (209)
++|+++.... ..++.||+.|++++||..
T Consensus 135 ~v~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~ 166 (306)
T PRK11142 135 ALLMQLETPLETVLAAAKIAKQHGTKVILNPA 166 (306)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 9999976542 345678899999999974
No 7
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.90 E-value=7.1e-23 Score=173.11 Aligned_cols=155 Identities=22% Similarity=0.266 Sum_probs=131.6
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
||+++| ++++|+++.+ +++|.++... . .......+||++.|+|++|+ |||.+
T Consensus 1 ~v~~iG-~~~~D~~~~v-----~~~p~~~~~~-~--------------------~~~~~~~~GG~~~Nva~~l~-~lg~~ 52 (279)
T cd01942 1 DVAVVG-HLNYDIILKV-----ESFPGPFESV-L--------------------VKDLRREFGGSAGNTAVALA-KLGLS 52 (279)
T ss_pred CEEEEe-cceeeeEeec-----ccCCCCCceE-e--------------------cceeeecCCcHHHHHHHHHH-HcCCC
Confidence 689999 9999999999 7888653211 1 13688999999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEec-CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLH 175 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~-~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~ 175 (209)
+.++|.+|+|.+|+++++.|++.||+++++... +.+|+.++++++++|+|+++.++++...+++++ ....+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (279)
T cd01942 53 PGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-EADPDGLADIVH 131 (279)
T ss_pred ceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-chhhhcccCEEE
Confidence 999999999999999999999999999999665 458999999999889999888888777777665 556789999999
Q ss_pred EeCCc-cHHHHHHHHhcCCeEEEecC
Q 028423 176 LALYL-KKLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 176 i~g~~-~~~~~~~ar~~g~~vsfd~~ 200 (209)
++++. .....+.+++.|++++||..
T Consensus 132 ~~~~~~~~~~~~~~~~~g~~v~~D~~ 157 (279)
T cd01942 132 LSSGPGLIELARELAAGGITVSFDPG 157 (279)
T ss_pred eCCchHHHHHHHHHHHcCCeEEEcch
Confidence 99886 44556677888999999963
No 8
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.90 E-value=8.9e-23 Score=173.55 Aligned_cols=156 Identities=26% Similarity=0.336 Sum_probs=131.0
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+++| .+++|+++.+ +++|.++... .. .....++||++.|+|.+|+ |||.+
T Consensus 1 ~il~iG-~~~~D~~~~~-----~~~~~~~~~~-~~--------------------~~~~~~~GG~~~NvA~~l~-~lG~~ 52 (292)
T cd01174 1 KVVVVG-SINVDLVTRV-----DRLPKPGETV-LG--------------------SSFETGPGGKGANQAVAAA-RLGAR 52 (292)
T ss_pred CEEEEe-eceeEEEEEe-----cCCCCCCCcE-Ee--------------------ccceecCCCcHHHHHHHHH-HcCCc
Confidence 489999 9999999998 6777653221 11 2578899999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEec-CCCCeeEEEEEcCCCCeeEeeccccccCCCccccch--hhcCCccE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGSKV 173 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~-~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~--~~i~~~d~ 173 (209)
+.++|.+|+|.+|+.+++.|++.||+++++... +.+|+.++++++++|+|+++.++++...+++++++. +.++++++
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T cd01174 53 VAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADV 132 (292)
T ss_pred eEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCE
Confidence 999999999999999999999999999999666 458999999999889999998888776776665543 46889999
Q ss_pred EEEeCCccH----HHHHHHHhcCCeEEEecC
Q 028423 174 LHLALYLKK----LLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 174 v~i~g~~~~----~~~~~ar~~g~~vsfd~~ 200 (209)
+|+++..+. ..++.+|++|++++||..
T Consensus 133 v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 163 (292)
T cd01174 133 LLLQLEIPLETVLAALRAARRAGVTVILNPA 163 (292)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCEEEEeCC
Confidence 999986643 345778999999999974
No 9
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.90 E-value=9.6e-23 Score=173.95 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=127.7
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+|+| ++++|+++.+ +++|.++..... ......+||+++|+|++|+ |||.+
T Consensus 1 ~v~~iG-~~~vD~~~~v-----~~~p~~~~~~~~---------------------~~~~~~~GG~a~NvA~~la-~lG~~ 52 (290)
T cd01939 1 AVLCVG-LTVLDFITTV-----DKYPFEDSDQRT---------------------TNGRWQRGGNASNSCTVLR-LLGLS 52 (290)
T ss_pred CEEEEe-eeeeEEEeee-----cCCCCCCcceEe---------------------eeeeEecCCCHHHHHHHHH-HcCCc
Confidence 489999 9999999999 788875432211 1567889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecCC-CCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLH 175 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~-~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~ 175 (209)
+.++|+||+|++|+++++.|++.|||++++...++ .++.++++++++|+|+++.+.++...++.++++...++++|++|
T Consensus 53 ~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
T cd01939 53 CEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKIDLTQYGWIH 132 (290)
T ss_pred eEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhhhhccCCEEE
Confidence 99999999999999999999999999999866544 56667787778899999988877777887777766678999999
Q ss_pred EeCCccHH---HHHHHHhcC-------CeEEEec
Q 028423 176 LALYLKKL---LFNLARDSL-------SSFSFYS 199 (209)
Q Consensus 176 i~g~~~~~---~~~~ar~~g-------~~vsfd~ 199 (209)
++++.++. .++.+++++ ++++||-
T Consensus 133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 166 (290)
T cd01939 133 FEGRNPDETLRMMQHIEEHNNRRPEIRITISVEV 166 (290)
T ss_pred EeccCHHHHHHHHHHHHHhcCcCCCcceEEEEEe
Confidence 99987643 445566666 6888884
No 10
>PTZ00292 ribokinase; Provisional
Probab=99.90 E-value=2e-22 Score=174.74 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=135.5
Q ss_pred cccCCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHH
Q 028423 10 REASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGL 89 (209)
Q Consensus 10 ~~~~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~l 89 (209)
|..+..++|+++| .+++|+++.+ +++|.++... .. +.....+||++.|+|++|
T Consensus 10 ~~~~~~~~vlviG-~~~vD~~~~~-----~~~~~~~~~~-~~--------------------~~~~~~~GG~~~NvA~~l 62 (326)
T PTZ00292 10 HGGEAEPDVVVVG-SSNTDLIGYV-----DRMPQVGETL-HG--------------------TSFHKGFGGKGANQAVMA 62 (326)
T ss_pred ccCCCCCCEEEEc-cceeeEEEec-----CCCCCCCCce-ee--------------------cCceeCCCCcHHHHHHHH
Confidence 4556778899999 9999999999 7788664321 11 256888999999999999
Q ss_pred HHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEec-CCCCeeEEEEEc-CCCCeeEeeccccccCCCccccch--
Q 028423 90 SVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCVCLVD-ASGNRTMRPCLSNAVKIQADELIA-- 165 (209)
Q Consensus 90 a~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~-~~~T~~~~v~i~-~~GeR~~~~~~g~~~~l~~~~i~~-- 165 (209)
+ |||.++.++|.||+|.+|+.+++.|++.||+++++... +.+|+.++++++ ++|+|+++.++++...+++++++.
T Consensus 63 a-~lG~~~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 141 (326)
T PTZ00292 63 S-KLGAKVAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQT 141 (326)
T ss_pred H-HcCCCeEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHH
Confidence 9 89999999999999999999999999999999999765 468999999998 789999998888877788776653
Q ss_pred hhcCC-ccEEEEeCCcc-H---HHHHHHHhcCCeEEEecC
Q 028423 166 EDVKG-SKVLHLALYLK-K---LLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 166 ~~i~~-~d~v~i~g~~~-~---~~~~~ar~~g~~vsfd~~ 200 (209)
..+.+ ++++++++..+ + ..++.+++.|++++||-.
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 181 (326)
T PTZ00292 142 DNIQNICKYLICQNEIPLETTLDALKEAKERGCYTVFNPA 181 (326)
T ss_pred HHhhhhCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 34677 99999987543 2 345667889999999974
No 11
>PLN02323 probable fructokinase
Probab=99.90 E-value=1e-22 Score=176.94 Aligned_cols=157 Identities=20% Similarity=0.343 Sum_probs=131.7
Q ss_pred cCCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHH
Q 028423 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (209)
Q Consensus 12 ~~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~ 91 (209)
.+...+|+++| ++++|++..+ +++|.... ..+...+||+++|+|++|+
T Consensus 7 ~~~~~~i~~iG-~~~vD~~~~~-----~~~~~~~~-------------------------~~~~~~~GG~~~NvA~~la- 54 (330)
T PLN02323 7 TAESSLVVCFG-EMLIDFVPTV-----SGVSLAEA-------------------------PAFKKAPGGAPANVAVGIS- 54 (330)
T ss_pred cCCCCcEEEec-hhhhhhccCC-----CCCCcccc-------------------------cceeecCCChHHHHHHHHH-
Confidence 45677899999 9999999887 45553210 2567899999999999999
Q ss_pred hcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEeecc--ccccCCCccccchhhc
Q 028423 92 GFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDV 168 (209)
Q Consensus 92 rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~~~~--g~~~~l~~~~i~~~~i 168 (209)
|||.++.++|.||+|.+|+++++.|++.||+++++.+.+ .+|+.++++++++|+|++++++ ++...+++++++.+.+
T Consensus 55 ~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (330)
T PLN02323 55 RLGGSSAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLI 134 (330)
T ss_pred hcCCceeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHH
Confidence 899999999999999999999999999999999998775 4899999999889999998775 5555678888887788
Q ss_pred CCccEEEEeCCcc---------HHHHHHHHhcCCeEEEecC
Q 028423 169 KGSKVLHLALYLK---------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 169 ~~~d~v~i~g~~~---------~~~~~~ar~~g~~vsfd~~ 200 (209)
++++++|++++.+ ...++.+|+.|++|+||..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 175 (330)
T PLN02323 135 RKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPN 175 (330)
T ss_pred ccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCC
Confidence 9999999987642 1346778999999999973
No 12
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.89 E-value=2.9e-22 Score=170.66 Aligned_cols=155 Identities=20% Similarity=0.247 Sum_probs=126.5
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+|+| .+++|++..+ +++|.++.... .......+|| +.|+|++|+ |||.+
T Consensus 1 ~i~~iG-~~~~D~i~~~-----~~~~~~~~~~~---------------------~~~~~~~~GG-~~Nva~~l~-~lG~~ 51 (289)
T cd01944 1 KVLVIG-AAVVDIVLDV-----DKLPASGGDIE---------------------AKSKSYVIGG-GFNVMVAAS-RLGIP 51 (289)
T ss_pred CeEEEc-ceeEEEEeec-----ccCCCCCCccc---------------------cceeeeccCc-HHHHHHHHH-HcCCC
Confidence 489999 9999999998 77876543211 1257899999 999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHL 176 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i 176 (209)
+.++|.+|+|.+|+++++.|++.||+++++.+...+|+.++++++++|+|+++.++++...+++++++...++++|++|+
T Consensus 52 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (289)
T cd01944 52 TVNAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATLTVAPYDYVYL 131 (289)
T ss_pred eEEEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccccCCCCCEEEE
Confidence 99999999999999999999999999998877655788888888889999999888887777777666555789999999
Q ss_pred eCCcc------HH-HHHHH--HhcCCeEEEecC
Q 028423 177 ALYLK------KL-LFNLA--RDSLSSFSFYSI 200 (209)
Q Consensus 177 ~g~~~------~~-~~~~a--r~~g~~vsfd~~ 200 (209)
+++.+ .. ..++. ++.+++++||..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~ 164 (289)
T cd01944 132 SGYTLASENASKVILLEWLEALPAGTTLVFDPG 164 (289)
T ss_pred eCccccCcchhHHHHHHHHHhccCCCEEEEcCc
Confidence 99753 11 22222 236799999973
No 13
>PLN02967 kinase
Probab=99.89 E-value=4.2e-22 Score=183.83 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=133.0
Q ss_pred ecccCCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHH
Q 028423 9 NREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRG 88 (209)
Q Consensus 9 ~~~~~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~ 88 (209)
+-.-..++.|+|+| .+++|++..... .+++- .+ .+...+..+-| ++..+...+||+++|+|++
T Consensus 190 ~~~~~~~~~V~~iG-e~l~D~~p~g~~--~~~l~--~~-----------~~~~~~~~~~s-~~~~~~~~~GGa~aNVAva 252 (581)
T PLN02967 190 SHTYGWPPLVCCFG-AAQHAFVPSGRP--ANRLL--DY-----------EIHERMKDAFW-APEKFVRAPGGSAGGVAIA 252 (581)
T ss_pred cCcCCCCCeEEEEC-chhheecccCcc--chhhh--hc-----------ccccccccccc-CccceeeecCcHHHHHHHH
Confidence 44445677899999 999999764310 00000 00 00000000000 2357888999999999999
Q ss_pred HHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEe-eccccccCCCccccchh
Q 028423 89 LSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMR-PCLSNAVKIQADELIAE 166 (209)
Q Consensus 89 la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~-~~~g~~~~l~~~~i~~~ 166 (209)
|+ |||.++.|+|+||+|.+|+++++.|++.|||++++.+.+ .+|+.++|+++++|+|.++ .++++...+++++++.+
T Consensus 253 LA-RLG~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~~ 331 (581)
T PLN02967 253 LA-SLGGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINID 331 (581)
T ss_pred HH-HCCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCHh
Confidence 99 899999999999999999999999999999999998875 4899999999999998775 45788788888888888
Q ss_pred hcCCccEEEEeCCcc---------HHHHHHHHhcCCeEEEec
Q 028423 167 DVKGSKVLHLALYLK---------KLLFNLARDSLSSFSFYS 199 (209)
Q Consensus 167 ~i~~~d~v~i~g~~~---------~~~~~~ar~~g~~vsfd~ 199 (209)
.+++++++|++++.+ ..+++.|+++|++|+||-
T Consensus 332 ~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDp 373 (581)
T PLN02967 332 VLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDL 373 (581)
T ss_pred HhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEEC
Confidence 899999999999752 124577899999999995
No 14
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.89 E-value=2.2e-22 Score=183.51 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=127.1
Q ss_pred CCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcC
Q 028423 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (209)
Q Consensus 15 ~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG 94 (209)
++.|+|+| .+++|++...... +..+. -.+|+++....| ++..+...+||+++|+|++++ |||
T Consensus 125 ~~~v~~~G-e~liDf~~~~~~~-~~~~~--------------~~~~~~~~~~~~-~~~~f~~~~GGa~aNVAvaLA-RLG 186 (496)
T PLN02543 125 PPLVCCFG-AVQKEFVPTVRVH-DNQMH--------------PDMYSQWKMLQW-DPPEFARAPGGPPSNVAISHV-RLG 186 (496)
T ss_pred CCeEEEeC-hhhhhhcCCCccc-ccccc--------------cccccccccccc-cCCeeEeccCcHHHHHHHHHH-HCC
Confidence 45699999 9999999875210 00000 012222111111 234678899999999999999 899
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCC-CCeeEEEEEc--CCCCeeEe-e-ccccccCCCccccchhhcC
Q 028423 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVD--ASGNRTMR-P-CLSNAVKIQADELIAEDVK 169 (209)
Q Consensus 95 ~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~-~T~~~~v~i~--~~GeR~~~-~-~~g~~~~l~~~~i~~~~i~ 169 (209)
.++.|+|+||+|.+|+++++.|++.|||++++.+.++ +|+.++|.++ ++| |.++ . ..+++..+.+++++.+.++
T Consensus 187 ~~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~~~l~ 265 (496)
T PLN02543 187 GRAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNLAVLK 265 (496)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCHhHhC
Confidence 9999999999999999999999999999999998754 8999999984 455 5454 3 3466667888888888899
Q ss_pred CccEEEEeCCcc---------HHHHHHHHhcCCeEEEecC
Q 028423 170 GSKVLHLALYLK---------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 170 ~~d~v~i~g~~~---------~~~~~~ar~~g~~vsfd~~ 200 (209)
+++++|++++.+ ..+++.||++|++|+||-.
T Consensus 266 ~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN 305 (496)
T PLN02543 266 EARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLN 305 (496)
T ss_pred CCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCC
Confidence 999999998763 1245778999999999953
No 15
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.1e-21 Score=168.94 Aligned_cols=159 Identities=27% Similarity=0.388 Sum_probs=134.2
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+++| ++++|++.... +++|.+... .. .......+||+++|+|++++ |||.+
T Consensus 1 ~v~~iG-~~~vD~~~~~~----~~~~~~~~~-~~--------------------~~~~~~~~GG~~~N~A~~~a-~lG~~ 53 (311)
T COG0524 1 DVVVIG-EANVDLIAQVV----DRLPEPGET-VL--------------------GDFFKVAGGGKGANVAVALA-RLGAK 53 (311)
T ss_pred CEEEEC-chhhheehhhc----cCCCCCccc-cc--------------------ccceeecCCchHHHHHHHHH-HcCCc
Confidence 489999 99999999742 667754321 11 01468889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecCC-CCeeEEEEEcCCCCeeEeeccc-cccCCCccccchhhcCCccEE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS-NAVKIQADELIAEDVKGSKVL 174 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~-~T~~~~v~i~~~GeR~~~~~~g-~~~~l~~~~i~~~~i~~~d~v 174 (209)
+.|+|+||+|.+|+.+++.|++.|||++++...++ +|+.++++++++|+|+|.++++ +...++++++++..++.++++
T Consensus 54 ~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (311)
T COG0524 54 VALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDEDELAGADVL 133 (311)
T ss_pred eEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcChHHHhhcCee
Confidence 99999999999999999999999999999998865 8999999999889999999988 466688888877778899999
Q ss_pred EEeCCcc-------HHHHHHHHhcCCeEEEecCcc
Q 028423 175 HLALYLK-------KLLFNLARDSLSSFSFYSIII 202 (209)
Q Consensus 175 ~i~g~~~-------~~~~~~ar~~g~~vsfd~~~~ 202 (209)
|++++.+ ...++.|+++|.+|+||-...
T Consensus 134 ~~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~ 168 (311)
T COG0524 134 HISGIQLEIPPEALLAALELAKAAGVTVSFDLNPR 168 (311)
T ss_pred eEEEeecCCChHHHHHHHHHHHHcCCeEEEecCCC
Confidence 9999875 345678899999999997544
No 16
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.87 E-value=6.1e-21 Score=160.57 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=123.6
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+++| ++++|+++.+ +++|.+++.... ......+||+++|+|++|+ |||.+
T Consensus 1 ~il~iG-~~~iD~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~GG~~~Nva~~l~-~lG~~ 52 (265)
T cd01947 1 KIAVVG-HVEWDIFLSL-----DAPPQPGGISHS---------------------SDSRESPGGGGANVAVQLA-KLGND 52 (265)
T ss_pred CEEEEe-eeeEEEEEEe-----cCCCCCCceeec---------------------ccceeecCchHHHHHHHHH-HcCCc
Confidence 589999 9999999999 677766433211 2688999999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHL 176 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i 176 (209)
+.++|.||+|.+|+.+++.|++ ++++.++...++.|+.++++++++|+|+++.+.+.. +++++.+.++++|++|+
T Consensus 53 ~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~~~~~~~~~~~~~ 127 (265)
T cd01947 53 VRFFSNLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGERL----EDDLKWPILDEGDGVFI 127 (265)
T ss_pred eEEEEEecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcceEEecCCCC----cccCCHhHhccCCEEEE
Confidence 9999999999999999999999 999998876667899999999989999988765432 34445567889999999
Q ss_pred eCCc-cHHHHHHHHhcCCeEEEecC
Q 028423 177 ALYL-KKLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 177 ~g~~-~~~~~~~ar~~g~~vsfd~~ 200 (209)
+++. ....++.+|+.+ .+++|..
T Consensus 128 ~~~~~~~~~~~~a~~~~-~~~~d~~ 151 (265)
T cd01947 128 TAAAVDKEAIRKCRETK-LVILQVT 151 (265)
T ss_pred ecccccHHHHHHHHHhC-CeEeccC
Confidence 9986 356677888775 5677753
No 17
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.87 E-value=6.6e-21 Score=161.61 Aligned_cols=154 Identities=22% Similarity=0.301 Sum_probs=126.7
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+++| .+++|+++.+ +++|.++... . .......+||++.|+|.+|+ +||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~-----~~~p~~~~~~-~--------------------~~~~~~~~GG~~~NvA~~l~-~lG~~ 52 (284)
T cd01945 1 RVLGVG-LAVLDLIYLV-----ASFPGGDGKI-V--------------------ATDYAVIGGGNAANAAVAVA-RLGGQ 52 (284)
T ss_pred CEEEEC-cceeEEEEEe-----ccCCCCCCeE-E--------------------EeEEEEecCCHHHHHHHHHH-HcCCC
Confidence 589999 9999999999 7788653321 1 12678999999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLH 175 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~ 175 (209)
+.++|.+|+|.+|+++++.|++.||++.++...+ .+|+.+++ ...+|+|.+..+.+....+..++++.+.++++|++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (284)
T cd01945 53 ARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISITAIDTQAAPDSLPDAILGGADAVL 131 (284)
T ss_pred eEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCHHHhCcCCEEE
Confidence 9999999999999999999999999999998875 47888877 455788887777666666777777777789999999
Q ss_pred EeCCccHH---HHHHHHhcCCeEEEec
Q 028423 176 LALYLKKL---LFNLARDSLSSFSFYS 199 (209)
Q Consensus 176 i~g~~~~~---~~~~ar~~g~~vsfd~ 199 (209)
++++.++. .++.+|+.|+++.+|.
T Consensus 132 i~~~~~~~~~~~~~~~~~~g~~v~~~~ 158 (284)
T cd01945 132 VDGRQPEAALHLAQEARARGIPIPLDL 158 (284)
T ss_pred EcCCCHHHHHHHHHHHHHcCCCeeEec
Confidence 99987643 5577788998665553
No 18
>PLN02548 adenosine kinase
Probab=99.86 E-value=9.5e-21 Score=164.74 Aligned_cols=171 Identities=25% Similarity=0.305 Sum_probs=132.8
Q ss_pred ecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHH---HHHHhcCCCe
Q 028423 21 LQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIR---GLSVGFGVPC 97 (209)
Q Consensus 21 iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~---~la~rLG~~~ 97 (209)
+| |+++|+++.+++.+|+++..++|.+++.. ....+...+.. ...+....+||++.|+|. .++ ++|.++
T Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-----~~~~~~~~~GG~~~Nva~~a~~l~-~lg~~~ 72 (332)
T PLN02548 1 MG-NPLLDISAVVDQDFLDKYDVKLNNAILAE-EKHLPMYDELA-----SKYNVEYIAGGATQNSIRVAQWML-QIPGAT 72 (332)
T ss_pred CC-CceeEEEEecCHHHHHHcCCCCCceeech-HHHHHHHHHHh-----ccCCceecCCcHHHHHHHHHHHHh-cCCCcE
Confidence 47 99999999999999999999999988543 33223222111 124688999999999754 446 579999
Q ss_pred EEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccc----hhhcCCccE
Q 028423 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI----AEDVKGSKV 173 (209)
Q Consensus 98 ~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~----~~~i~~~d~ 173 (209)
.|+|.||+|.+|+++++.|++.||+++++...+.+|+.++++++ +|+|+++.+.++...+++++++ .+.++++|+
T Consensus 73 ~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (332)
T PLN02548 73 SYMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKF 151 (332)
T ss_pred EEEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCE
Confidence 99999999999999999999999999987654568999999886 7999998887766666655443 345789999
Q ss_pred EEEeCCcc---H----HHHHHHHhcCCeEEEecC
Q 028423 174 LHLALYLK---K----LLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 174 v~i~g~~~---~----~~~~~ar~~g~~vsfd~~ 200 (209)
+|++|+.+ + ..++.+++.|.++.+|..
T Consensus 152 v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~ 185 (332)
T PLN02548 152 YYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLS 185 (332)
T ss_pred EEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 99998643 2 244667889998888753
No 19
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.86 E-value=5.7e-21 Score=174.01 Aligned_cols=173 Identities=20% Similarity=0.194 Sum_probs=125.5
Q ss_pred ccCCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHH
Q 028423 11 EASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLS 90 (209)
Q Consensus 11 ~~~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la 90 (209)
.+...++|+++| ++++|+++.+ +++|.++.. ....+..++... .+......+|| ++|+|++|+
T Consensus 68 ~~~~~~~vl~lG-~~~vD~i~~V-----~~lP~~~~~-------~~~~~~~~~~~~---~~~~~~~~~GG-~~NvAvaLa 130 (470)
T PLN02341 68 AAGKEIDVATLG-NLCVDIVLPV-----PELPPPSRE-------ERKAYMEELAAS---PPDKKSWEAGG-NCNFAIAAA 130 (470)
T ss_pred cccccccEEEEC-CcceeEEEec-----CCCCCCCHH-------HHHHHHHhhccc---ccccceecCCh-HHHHHHHHH
Confidence 344557899999 9999999999 788865321 111222211100 01134556777 689999999
Q ss_pred HhcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecC---------CCCeeEEEEEcCCCCeeEeeccccccCCCcc
Q 028423 91 VGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR---------GPTGQCVCLVDASGNRTMRPCLSNAVKIQAD 161 (209)
Q Consensus 91 ~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~---------~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~ 161 (209)
|||.++.++|.||+|.+|+++++.|++.|||+.++...+ .+|+.|+++++++|+|+++...+.......+
T Consensus 131 -rLG~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~ 209 (470)
T PLN02341 131 -RLGLRCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFS 209 (470)
T ss_pred -HcCCCeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchh
Confidence 899999999999999999999999999999999987653 3699999999999999876443221111111
Q ss_pred ------ccchhhcCCccEEEEeCCcc--------HHHHHHHHhcCCeEEEecCc
Q 028423 162 ------ELIAEDVKGSKVLHLALYLK--------KLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 162 ------~i~~~~i~~~d~v~i~g~~~--------~~~~~~ar~~g~~vsfd~~~ 201 (209)
+...+.++++|+||++++.+ ...++.||+.|++|+||..+
T Consensus 210 ~~~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~ 263 (470)
T PLN02341 210 WISKLSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGP 263 (470)
T ss_pred hhhcccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 11234688999999999852 23457789999999999754
No 20
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=5.9e-21 Score=162.83 Aligned_cols=156 Identities=28% Similarity=0.351 Sum_probs=138.0
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV- 95 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~- 95 (209)
-.+++| |+++|+...|+++||++++++.|+..+++.+ ...++.++... .+....+||++-|+++.++ +++-
T Consensus 8 il~G~g-npLLD~~a~Vd~~~L~KygL~~n~ail~d~~-~~~~~~E~~~~-----~~~~~~AGGs~qNt~R~aq-~~~~~ 79 (343)
T KOG2854|consen 8 ILVGLG-NPLLDISAVVDDEFLDKYGLKLNDAILADDK-HLGLFDELMEG-----FNVKYSAGGSAQNTLRIAQ-WLLQQ 79 (343)
T ss_pred eeeccC-ccceeeeeccCHHHHHHcCCCCCcceecchh-hHHHHHHHhhc-----ccEEecCCchhHHHHHHHH-HHccC
Confidence 356788 9999999999999999999999999998865 55566665543 3789999999999999999 5876
Q ss_pred --CeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccch----hhcC
Q 028423 96 --PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA----EDVK 169 (209)
Q Consensus 96 --~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~----~~i~ 169 (209)
.+.|+|+||+|.+|+.+++.+++.||+..+....+.+||+|.++++.++ |+++.+.+++..++.++++. ..++
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~lve 158 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWALVE 158 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhhhhh
Confidence 8999999999999999999999999999998887889999999999666 99999999999999888753 3789
Q ss_pred CccEEEEeCCcc
Q 028423 170 GSKVLHLALYLK 181 (209)
Q Consensus 170 ~~d~v~i~g~~~ 181 (209)
+++++|++|+++
T Consensus 159 ka~v~yv~Gffl 170 (343)
T KOG2854|consen 159 KAKVFYVAGFFL 170 (343)
T ss_pred heeEEEEEEEEE
Confidence 999999999985
No 21
>PRK09850 pseudouridine kinase; Provisional
Probab=99.86 E-value=1.5e-20 Score=162.42 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=123.8
Q ss_pred CCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhc
Q 028423 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (209)
Q Consensus 14 ~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rL 93 (209)
..+.|+|+| ++++|+++.+ +. |.+.++... ......+||+++|+|++|+ ||
T Consensus 3 ~~~~i~~iG-~~~vD~~~~~-----~~-~~~~~~~~~---------------------~~~~~~~GG~~~NvA~~l~-~l 53 (313)
T PRK09850 3 EKDYVVIIG-SANIDVAGYS-----HE-SLNYADSNP---------------------GKIKFTPGGVGRNIAQNLA-LL 53 (313)
T ss_pred CCCcEEEEC-cEEEeeeccC-----CC-cCcCCCCCc---------------------eEEEEeCCcHHHHHHHHHH-Hc
Confidence 456899999 9999999987 33 333333211 2578889999999999999 89
Q ss_pred CCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCC-CCeeEEEEEcCCCCeeEeec-cccccCCCccccc--hhhcC
Q 028423 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPC-LSNAVKIQADELI--AEDVK 169 (209)
Q Consensus 94 G~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~-~T~~~~v~i~~~GeR~~~~~-~g~~~~l~~~~i~--~~~i~ 169 (209)
|.++.++|.||+|.+|+++++.|++.|||++++...++ +|+.++++++++|+|++..+ +++...+.++.++ .+.++
T Consensus 54 G~~~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (313)
T PRK09850 54 GNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQ 133 (313)
T ss_pred CCCeEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999877655 79999999999999988765 3444556555443 24588
Q ss_pred CccEEEEeCCccHHHHH-HH-HhcCCeEEEecC
Q 028423 170 GSKVLHLALYLKKLLFN-LA-RDSLSSFSFYSI 200 (209)
Q Consensus 170 ~~d~v~i~g~~~~~~~~-~a-r~~g~~vsfd~~ 200 (209)
+++++|+++......+. ++ +..|++++||..
T Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~~~g~~v~~D~~ 166 (313)
T PRK09850 134 RAKVIVADCNISEEALAWILDNAANVPVFVDPV 166 (313)
T ss_pred cCCEEEEeCCCCHHHHHHHHHhccCCCEEEEcC
Confidence 99999998876544433 22 335899999965
No 22
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.85 E-value=4.2e-20 Score=157.46 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=126.3
Q ss_pred ceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeEEEEEe
Q 028423 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (209)
Q Consensus 24 ~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~lig~V 103 (209)
++++|+++.+ +++|.++.. ... ......+||++.|+|.+|+ +||.++.+++.+
T Consensus 2 ~~~~D~~~~~-----~~~p~~~~~-~~~--------------------~~~~~~~GG~~~Nva~~l~-~lg~~~~~~~~v 54 (293)
T TIGR02152 2 SINMDLVLRT-----DRLPKPGET-VHG--------------------HSFQIGPGGKGANQAVAAA-RLGAEVSMIGKV 54 (293)
T ss_pred CceEeEEEEe-----CCCCCCCCc-Eec--------------------CCceecCCCcHHHHHHHHH-HCCCCEEEEEEe
Confidence 8999999999 778866422 111 3678999999999999999 899999999999
Q ss_pred cCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEeeccccccCCCccccc--hhhcCCccEEEEeCCc
Q 028423 104 GDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI--AEDVKGSKVLHLALYL 180 (209)
Q Consensus 104 G~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~--~~~i~~~d~v~i~g~~ 180 (209)
|+|.+|+++++.|++.||+++++...+ .+|+.++++++++|+|+++.++++...+.+++++ .+.++.+|++++++..
T Consensus 55 G~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (293)
T TIGR02152 55 GDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQLEI 134 (293)
T ss_pred cCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCEEEEecCC
Confidence 999999999999999999999998764 4899999999988999999888877777777665 3467899999998765
Q ss_pred cH----HHHHHHHhcCCeEEEecC
Q 028423 181 KK----LLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 181 ~~----~~~~~ar~~g~~vsfd~~ 200 (209)
.. ..++.+|++++++++|..
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~D~~ 158 (293)
T TIGR02152 135 PLETVLEAAKIAKKHGVKVILNPA 158 (293)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECC
Confidence 43 345677889999999974
No 23
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.85 E-value=1.7e-20 Score=159.44 Aligned_cols=151 Identities=22% Similarity=0.320 Sum_probs=123.8
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+++| ++++|+++..+. .. . . ..+....+||+++|+|++|+ |||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~~~-----------~~-~-------------~------~~~~~~~~GG~~~N~a~~la-~lg~~ 47 (294)
T cd01166 1 DVVTIG-EVMVDLSPPGGG-----------RL-E-------------Q------ADSFRKFFGGAEANVAVGLA-RLGHR 47 (294)
T ss_pred CeEEec-hhheeeecCCCC-----------cc-c-------------h------hhccccccCChHHHHHHHHH-hcCCc
Confidence 589999 999999877621 10 0 0 12567889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEeeccc--cccCCCccccchhhcCCccE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLS--NAVKIQADELIAEDVKGSKV 173 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~~~~g--~~~~l~~~~i~~~~i~~~d~ 173 (209)
+.++|.+|+|.+|+.+++.|++.||+++++...+ .+|+.+++.++++|+|+++.+++ +...++.++++...++++|+
T Consensus 48 ~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
T cd01166 48 VALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADH 127 (294)
T ss_pred eEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCE
Confidence 9999999999999999999999999999997664 58999999998789999887753 44567777776677899999
Q ss_pred EEEeCCccH----------HHHHHHHhcCCeEEEecC
Q 028423 174 LHLALYLKK----------LLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 174 v~i~g~~~~----------~~~~~ar~~g~~vsfd~~ 200 (209)
||++++.+. ..++.+++.+++++||..
T Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~ 164 (294)
T cd01166 128 LHLSGITLALSESAREALLEALEAAKARGVTVSFDLN 164 (294)
T ss_pred EEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCC
Confidence 999997642 134667888999999974
No 24
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.85 E-value=2.9e-20 Score=156.24 Aligned_cols=124 Identities=22% Similarity=0.241 Sum_probs=102.4
Q ss_pred eEecCchHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeecc-c
Q 028423 75 KTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-S 153 (209)
Q Consensus 75 ~~~~GG~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~-g 153 (209)
...+||+++|+|.+|+ |||.++.++|.+|+|.+|+.+++.|++.||+++++...+++|+.+++. .++|+|+++.+. +
T Consensus 18 ~~~~GG~~~Nva~~la-~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~-~~~g~r~~~~~~~~ 95 (264)
T cd01940 18 KMYPGGNALNVAVYAK-RLGHESAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVE-LVDGDRIFGLSNKG 95 (264)
T ss_pred eecCCCcHHHHHHHHH-HcCCCeeEEecccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEE-ecCCceEEEeecCC
Confidence 4679999999999999 899999999999999999999999999999999998766789988865 468999987664 5
Q ss_pred cccCCCccccchhhcCCccEEEEeCCcc----HHHHHHHHhcCCeEEEecC
Q 028423 154 NAVKIQADELIAEDVKGSKVLHLALYLK----KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 154 ~~~~l~~~~i~~~~i~~~d~v~i~g~~~----~~~~~~ar~~g~~vsfd~~ 200 (209)
+.....+.+.+.+.++++|++|++++.+ ...++.+|++|++|+||..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 146 (264)
T cd01940 96 GVAREHPFEADLEYLSQFDLVHTGIYSHEGHLEKALQALVGAGALISFDFS 146 (264)
T ss_pred cHHhcccCcccHhHHhcCCEEEEcccccHHHHHHHHHHHHHcCCEEEEcCc
Confidence 4444443344445688999999998864 3456778999999999974
No 25
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.3e-20 Score=161.91 Aligned_cols=165 Identities=21% Similarity=0.282 Sum_probs=134.7
Q ss_pred CCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHh
Q 028423 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (209)
Q Consensus 13 ~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~r 92 (209)
.-++.|+|+| ++++|++..+ +++|.+. . +. .+..+...+||+++|+|++++ |
T Consensus 7 ~~~~~vv~fG-s~~~D~V~~~-----~~~p~~g-e-~~-------------------~~~~f~~~~GG~~aN~Avaaa-r 58 (330)
T KOG2855|consen 7 GEPPLVVVFG-SMLIDFVPST-----RRLPNAG-E-TW-------------------EPPGFKTAPGGKGANQAVAAA-R 58 (330)
T ss_pred cCCceEEEec-cceeeeeecc-----ccCCCcc-c-cc-------------------cCCcceecCCCcchhhhhHHH-h
Confidence 3467899999 9999999999 7888652 1 11 135799999999999999999 8
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCC-CCeeEEEEEcCCCCeeEeeccccccCCCcc--ccchhhcC
Q 028423 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQAD--ELIAEDVK 169 (209)
Q Consensus 93 LG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~-~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~--~i~~~~i~ 169 (209)
||.+++|||+||+|.+|+.+.+.|++.+|+++++...++ +|+++.+.+..+|++.++.+.+++..+.++ ++..+.++
T Consensus 59 LG~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~ 138 (330)
T KOG2855|consen 59 LGGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIK 138 (330)
T ss_pred cCcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHh
Confidence 999999999999999999999999999999999999865 899999999999999999999887776554 56678899
Q ss_pred CccEEEEeCCcc-HHHHHHHHhcCCeEEEecCccccc
Q 028423 170 GSKVLHLALYLK-KLLFNLARDSLSSFSFYSIIITFF 205 (209)
Q Consensus 170 ~~d~v~i~g~~~-~~~~~~ar~~g~~vsfd~~~~~~~ 205 (209)
.++++|+.+..+ +...+.++-+.++++++-++.-|+
T Consensus 139 ~ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~ 175 (330)
T KOG2855|consen 139 EAKVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFY 175 (330)
T ss_pred hccEEEEeeecCCcchhHHHHHhhhhhhhcccccccC
Confidence 999999988764 333333333336666666655554
No 26
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.84 E-value=6.7e-20 Score=156.07 Aligned_cols=148 Identities=23% Similarity=0.362 Sum_probs=121.3
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+++| ++++|++... ++.+ ......+||+++|+|.+++ +||.+
T Consensus 1 ~ilviG-~~~~D~~~~~-----~~~~-----------------------------~~~~~~~GG~~~n~a~~l~-~lg~~ 44 (295)
T cd01167 1 KVVCFG-EALIDFIPEG-----SGAP-----------------------------ETFTKAPGGAPANVAVALA-RLGGK 44 (295)
T ss_pred CEEEEc-ceeEEEecCC-----CCCC-----------------------------ccccccCCCcHHHHHHHHH-hcCCC
Confidence 589999 9999999876 2221 1567889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEec-CCCCeeEEEEEcCCCCeeEeeccccccCCCccc-cchhhcCCccEE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE-LIAEDVKGSKVL 174 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~-~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~-i~~~~i~~~d~v 174 (209)
+.+++.+|+|.+|+.+++.|++.||++.++.+. +.+|+.++++++++|+|++..+.++......+. +..+.+++++++
T Consensus 45 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 124 (295)
T cd01167 45 AAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELNPDLLSEADIL 124 (295)
T ss_pred eEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCChhHhccCCEE
Confidence 999999999999999999999999999999865 458999999998889999998776544433222 455678899999
Q ss_pred EEeCCcc---------HHHHHHHHhcCCeEEEecC
Q 028423 175 HLALYLK---------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 175 ~i~g~~~---------~~~~~~ar~~g~~vsfd~~ 200 (209)
|++++.. ...++.+|+.|+++++|..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~ 159 (295)
T cd01167 125 HFGSIALASEPSRSALLELLEAAKKAGVLISFDPN 159 (295)
T ss_pred EEechhhccchHHHHHHHHHHHHHHcCCEEEEcCC
Confidence 9987631 1245677889999999974
No 27
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.84 E-value=4.4e-20 Score=156.71 Aligned_cols=154 Identities=23% Similarity=0.302 Sum_probs=121.9
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
.|+++| .+++|+++.+ ++.|.+++.. . ......+||+++|+|++++ +||.+
T Consensus 1 ~v~~~G-~~~~D~~~~~-----~~~~~~~~~~-~---------------------~~~~~~~GG~~~Nva~~l~-~lG~~ 51 (288)
T cd01941 1 EIVVIG-AANIDLRGKV-----SGSLVPGTSN-P---------------------GHVKQSPGGVGRNIAENLA-RLGVS 51 (288)
T ss_pred CeEEEE-eEEEeeeecc-----cCccccCCCC-C---------------------eeEEEccCcHHHHHHHHHH-HhCCC
Confidence 378999 9999999998 5566543221 1 1467889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEe-eccccccCCCccccc--hhhcCCccE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR-PCLSNAVKIQADELI--AEDVKGSKV 173 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~-~~~g~~~~l~~~~i~--~~~i~~~d~ 173 (209)
+.++|.+|+|++|+.+++.|++.||++.++...+.+|+.++++++++|+|++. ..++....++++..+ .+.++++++
T Consensus 52 ~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (288)
T cd01941 52 VALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKP 131 (288)
T ss_pred cEEEEEEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCE
Confidence 99999999999999999999999999998874456899999999989999874 334443344433222 346889999
Q ss_pred EEEeCCccH----HHHHHHHhcCCeEEEec
Q 028423 174 LHLALYLKK----LLFNLARDSLSSFSFYS 199 (209)
Q Consensus 174 v~i~g~~~~----~~~~~ar~~g~~vsfd~ 199 (209)
+++++.... ...+.+|+++++++||.
T Consensus 132 v~~~~~~~~~~~~~~~~~a~~~~~~v~~d~ 161 (288)
T cd01941 132 IVVDANLPEEALEYLLALAAKHGVPVAFEP 161 (288)
T ss_pred EEEeCCCCHHHHHHHHHhhhhcCCcEEEEc
Confidence 999886543 34567788999999995
No 28
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.84 E-value=6.4e-20 Score=156.98 Aligned_cols=148 Identities=23% Similarity=0.236 Sum_probs=118.7
Q ss_pred ecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeEEE
Q 028423 21 LQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLI 100 (209)
Q Consensus 21 iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~li 100 (209)
+++++.+|+++.+ +++| ++ ..... .+...++||+++|+|++|+ |||.++.++
T Consensus 4 ~~~~~~~D~~~~~-----~~~~-~g-~~~~~--------------------~~~~~~~GG~~~NvA~~la-~lG~~v~~i 55 (304)
T TIGR03828 4 VTLNPAIDLTIEL-----DGLT-LG-EVNRV--------------------ESTRIDAGGKGINVSRVLK-NLGVDVVAL 55 (304)
T ss_pred EEcchHHeEEEEc-----cccc-cC-ceeec--------------------ccccccCCccHHHHHHHHH-HcCCCeEEE
Confidence 3359999999999 7787 54 33221 2678999999999999999 899999999
Q ss_pred EEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccch------hhcCCccEE
Q 028423 101 GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSKVL 174 (209)
Q Consensus 101 g~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~------~~i~~~d~v 174 (209)
|.||+| +|+.+++.|++.|||++++... ++|+.++++++++|+|+++.+++. .+++++++. +.+++++++
T Consensus 56 s~vG~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v 131 (304)
T TIGR03828 56 GFLGGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPSGTETKLNGPGP--EISEEELEALLEKLRAQLAEGDWL 131 (304)
T ss_pred EEecCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEE
Confidence 999999 6999999999999999988775 468888888888899988877654 344443331 358899999
Q ss_pred EEeCCcc--------HHHHHHHHhcCCeEEEecC
Q 028423 175 HLALYLK--------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 175 ~i~g~~~--------~~~~~~ar~~g~~vsfd~~ 200 (209)
|++++.+ ...++.+++.|++++||..
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~ 165 (304)
T TIGR03828 132 VLSGSLPPGVPPDFYAELIALAREKGAKVILDTS 165 (304)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 9998753 2345778899999999964
No 29
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.83 E-value=6.9e-20 Score=154.15 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=118.0
Q ss_pred CeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC
Q 028423 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~ 95 (209)
.+|+++| .+++|+..+. -+.++||+++|+|++|+ |||.
T Consensus 1 ~~v~~iG-~~~~D~~~~~----------------------------------------~~~~~GG~~~NvA~~l~-~lG~ 38 (260)
T PRK09813 1 KKLATIG-DNCVDIYPQL----------------------------------------GKAFSGGNAVNVAVYCT-RYGI 38 (260)
T ss_pred CeEEEec-cceeeecccC----------------------------------------CccccCccHHHHHHHHH-HcCC
Confidence 3699999 9999998654 12578999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeecc-ccccCCCccccchhhcCCccEE
Q 028423 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-SNAVKIQADELIAEDVKGSKVL 174 (209)
Q Consensus 96 ~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~-g~~~~l~~~~i~~~~i~~~d~v 174 (209)
++.++|.||+|.+|+++++.|++.||+++++.+.+++|+.+++.++ +|+|++..+. +....+..++.+.+.++++|++
T Consensus 39 ~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 117 (260)
T PRK09813 39 QPGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYAWLAQYDIV 117 (260)
T ss_pred cceEEEEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEe-CCcEEeeccCCCcccccccCHHHHHHHHhCCEE
Confidence 9999999999999999999999999999999877678999888875 7999988664 5555555444455678899999
Q ss_pred EEeCCc-cHHHHHHHHhcCCeEEEecC
Q 028423 175 HLALYL-KKLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 175 ~i~g~~-~~~~~~~ar~~g~~vsfd~~ 200 (209)
|++.+. ....++.+|+.|++++||..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~v~~D~~ 144 (260)
T PRK09813 118 HAAIWGHAEDAFPQLHAAGKLTAFDFS 144 (260)
T ss_pred EEeccchHHHHHHHHHHcCCeEEEEcC
Confidence 997543 45677888999999999974
No 30
>PRK09954 putative kinase; Provisional
Probab=99.82 E-value=3.9e-19 Score=156.66 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=118.6
Q ss_pred CeEEEecCceeEEEEeecCHHHHh-hCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcC
Q 028423 16 ALILGLQPAALIDHVARVDWSLLD-QIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (209)
Q Consensus 16 ~~Il~iG~~~~vD~i~~v~~~~l~-~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG 94 (209)
..|+++| ++++|+++.+ + ++|.++. . +......+||+++|+|++++ |||
T Consensus 58 ~~v~viG-~~~vD~~~~~-----~~~~p~~~~---~--------------------~~~~~~~~GG~~~NvA~~la-rLG 107 (362)
T PRK09954 58 EYCVVVG-AINMDIRGMA-----DIRYPQAAS---H--------------------PGTIHCSAGGVGRNIAHNLA-LLG 107 (362)
T ss_pred ccEEEEE-EEEEEEEEee-----CCcCcCCCC---C--------------------CceEEEecCcHHHHHHHHHH-HcC
Confidence 3799999 9999999998 4 6664321 1 12578889999999999999 899
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCC-CCeeEEEEEcCCCCeeEeecc-ccccCCCccccc--hhhcCC
Q 028423 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCL-SNAVKIQADELI--AEDVKG 170 (209)
Q Consensus 95 ~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~-~T~~~~v~i~~~GeR~~~~~~-g~~~~l~~~~i~--~~~i~~ 170 (209)
.++.|+|.||+|.+|+++++.|++.|||++++...++ +|+.++++.++++++.+.... +....++++.++ .+.++.
T Consensus 108 ~~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (362)
T PRK09954 108 RDVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNGSRDLIRH 187 (362)
T ss_pred CCeEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999887765 789988887765555443322 233456655444 245788
Q ss_pred ccEEEEeCCccHHHHHHH--HhcCCeEEEecCc
Q 028423 171 SKVLHLALYLKKLLFNLA--RDSLSSFSFYSII 201 (209)
Q Consensus 171 ~d~v~i~g~~~~~~~~~a--r~~g~~vsfd~~~ 201 (209)
++++++++..++.....+ ...+++++||...
T Consensus 188 ~~~v~~~~~~~~~~~~~~~~~a~~~~v~~D~~~ 220 (362)
T PRK09954 188 AGVVLADCNLTAEALEWVFTLADEIPVFVDTVS 220 (362)
T ss_pred CCEEEEECCCCHHHHHHHHHhCCCCcEEEECCC
Confidence 999999887655433221 2357999999753
No 31
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.81 E-value=9.1e-19 Score=149.83 Aligned_cols=159 Identities=22% Similarity=0.268 Sum_probs=115.4
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+++| ++++|+++.++. +++|.+...... . .......+|| ++|+|.+|+ |||.+
T Consensus 1 ~vl~iG-~~~~D~~~~~~~---~~~~~~~~~~~~-------------~------~~~~~~~~GG-~~NvA~~la-~LG~~ 55 (304)
T cd01172 1 KVLVVG-DVILDEYLYGDV---ERISPEAPVPVV-------------K------VEREEIRLGG-AANVANNLA-SLGAK 55 (304)
T ss_pred CEEEEc-ceeEEeeEeecc---ccccCCCCcceE-------------E------eeeEEecCcH-HHHHHHHHH-HhCCC
Confidence 589999 999999998632 344432211111 0 0246778999 689999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccc------cchhhcCC
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE------LIAEDVKG 170 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~------i~~~~i~~ 170 (209)
+.++|.+|+|.+|+++++.|++.||++.++...+.+|+.+++++++ ++|.+..+.+....+..+. ...+.+++
T Consensus 56 ~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (304)
T cd01172 56 VTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLPE 134 (304)
T ss_pred eEEEEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999854334479999888874 5676665544333343221 11345899
Q ss_pred ccEEEEeCCcc--------HHHHHHHHhcCCeEEEecCc
Q 028423 171 SKVLHLALYLK--------KLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 171 ~d~v~i~g~~~--------~~~~~~ar~~g~~vsfd~~~ 201 (209)
+|++|++++.+ ...++.+|++|++|+||...
T Consensus 135 ~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~ 173 (304)
T cd01172 135 ADVVILSDYGKGVLTPRVIEALIAAARELGIPVLVDPKG 173 (304)
T ss_pred CCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 99999987531 23456788999999999743
No 32
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.80 E-value=2.9e-19 Score=152.09 Aligned_cols=133 Identities=31% Similarity=0.503 Sum_probs=116.1
Q ss_pred CeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC
Q 028423 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~ 95 (209)
.+|+++| .+++|++..+ +++ .+..... ......+||++.|+|++|+ +||.
T Consensus 2 ~~v~~iG-~~~iD~~~~~-----~~~---~~~~~~~--------------------~~~~~~~GG~~~n~a~~l~-~LG~ 51 (301)
T PF00294_consen 2 KKVLVIG-EVNIDIIGYV-----DRF---KGDLVRV--------------------SSVKRSPGGAGANVAIALA-RLGA 51 (301)
T ss_dssp EEEEEES-EEEEEEEEES-----SSH---TTSEEEE--------------------SEEEEEEESHHHHHHHHHH-HTTS
T ss_pred CcEEEEC-ccceEEEeec-----CCc---CCcceec--------------------ceEEEecCcHHHHHHHHHH-hccC
Confidence 4799999 9999999999 333 1222221 3789999999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEE
Q 028423 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVL 174 (209)
Q Consensus 96 ~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v 174 (209)
++.+++.+|+|.+|+.+++.|++.||+++++.+.+ .+|+.++++++++|+|+++.+.++...++++++.+..+++++++
T Consensus 52 ~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (301)
T PF00294_consen 52 DVALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDELDEEAIDEADIL 131 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHHHHHHHHTESEE
T ss_pred cceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccccccccccccce
Confidence 99999999999999999999999999999999775 48999999999889999999988877877776667789999999
Q ss_pred EEeC
Q 028423 175 HLAL 178 (209)
Q Consensus 175 ~i~g 178 (209)
|+++
T Consensus 132 ~~~~ 135 (301)
T PF00294_consen 132 HLSG 135 (301)
T ss_dssp EEES
T ss_pred eecc
Confidence 9999
No 33
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.80 E-value=2.4e-18 Score=148.16 Aligned_cols=160 Identities=19% Similarity=0.235 Sum_probs=114.2
Q ss_pred CCCeEEEecCceeEEEEeecCHHHHhhCCC-CCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHh
Q 028423 14 QAALILGLQPAALIDHVARVDWSLLDQIPG-ERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (209)
Q Consensus 14 ~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~-~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~r 92 (209)
++++|+++| .+++|+++..+. ++++. ..+.... .......+|| ++|+|.+|+ |
T Consensus 6 ~~~~il~iG-~~~iD~~~~~~~---~~~~~~~~~~~~~--------------------~~~~~~~~GG-a~NvA~~l~-~ 59 (315)
T TIGR02198 6 KGAKVLVVG-DVMLDRYWYGKV---SRISPEAPVPVVK--------------------VEREEDRLGG-AANVARNIA-S 59 (315)
T ss_pred CCCcEEEEC-ceeEeeeeeecc---cccCCCCCCceEE--------------------EEEEEecCcH-HHHHHHHHH-h
Confidence 478899999 999999988311 33321 1110000 0145777898 799999999 8
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEeeccccccCCCcc----ccc--h
Q 028423 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQAD----ELI--A 165 (209)
Q Consensus 93 LG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~----~i~--~ 165 (209)
||.++.++|.||+|.+|+++++.|++.||++.++...+ .+|+.+++++++++ +.+.........+..+ .++ .
T Consensus 60 lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (315)
T TIGR02198 60 LGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQ-QLLRVDFEERDPINAELEARLLAAIR 138 (315)
T ss_pred cCCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCe-EEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765 48999999887532 2222232222223321 111 3
Q ss_pred hhcCCccEEEEeCCcc--------HHHHHHHHhcCCeEEEecC
Q 028423 166 EDVKGSKVLHLALYLK--------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 166 ~~i~~~d~v~i~g~~~--------~~~~~~ar~~g~~vsfd~~ 200 (209)
+.++++|++|++++.. ...++.+|++|++|+||..
T Consensus 139 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 181 (315)
T TIGR02198 139 EQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPK 181 (315)
T ss_pred hhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCC
Confidence 4588999999987641 2355778999999999974
No 34
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.80 E-value=2.1e-18 Score=148.80 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=118.6
Q ss_pred EEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCe
Q 028423 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (209)
Q Consensus 18 Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~ 97 (209)
|+.+..|+++|+++.+ +++| + |+...+ .....++||+++|+|++|+ |||.++
T Consensus 5 ~~~~~~~p~~D~~~~~-----~~~~-~-~~~~~~--------------------~~~~~~~GG~~~Nva~~la-~lG~~~ 56 (312)
T PRK09513 5 VATITLNPAYDLVGFC-----PEIE-R-GEVNLV--------------------KTTGLHAAGKGINVAKVLK-DLGIDV 56 (312)
T ss_pred EEEEecChHHeEEEEc-----Ccee-c-CCeeee--------------------cceeecCCchHHHHHHHHH-HcCCCe
Confidence 5544459999999999 7787 3 433332 2678999999999999999 899999
Q ss_pred EEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccc------hhhcCCc
Q 028423 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVKGS 171 (209)
Q Consensus 98 ~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~------~~~i~~~ 171 (209)
.++|.||+|.+|++ ++.|++.||++.++. .+++|+.++++++++|+|+++.+.+. .+++.+.+ .+.++++
T Consensus 57 ~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 132 (312)
T PRK09513 57 TVGGFLGKDNQDGF-QQLFSELGIANRFQV-VQGRTRINVKLTEKDGEVTDFNFSGF--EVTPADWERFVTDSLSWLGQF 132 (312)
T ss_pred EEEEEecCccHHHH-HHHHHHcCCCccEEE-CCCCCEEEEEEEeCCCcEEEEeCCCC--CCCHHHHHHHHHHHHhhcCCC
Confidence 99999999999997 689999999988764 45678999888888899987776553 34433322 2458899
Q ss_pred cEEEEeCCccH--------HHHHHHHhcCCeEEEecC
Q 028423 172 KVLHLALYLKK--------LLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 172 d~v~i~g~~~~--------~~~~~ar~~g~~vsfd~~ 200 (209)
|++|++|+.+. ..++.+|+.|.+++||..
T Consensus 133 d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 169 (312)
T PRK09513 133 DMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSS 169 (312)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECC
Confidence 99999998652 235677889999999975
No 35
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.80 E-value=1.7e-18 Score=148.62 Aligned_cols=145 Identities=23% Similarity=0.305 Sum_probs=116.1
Q ss_pred CCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcC
Q 028423 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (209)
Q Consensus 15 ~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG 94 (209)
..+|+++| ++++|++... + ......+||++.|+|++|+ |||
T Consensus 2 ~~~il~iG-~~~iD~~~~~------------~-------------------------~~~~~~~GG~~~N~a~~l~-~LG 42 (304)
T PRK09434 2 MNKVWVLG-DAVVDLIPEG------------E-------------------------NRYLKCPGGAPANVAVGIA-RLG 42 (304)
T ss_pred CCcEEEec-chheeeecCC------------C-------------------------CceeeCCCChHHHHHHHHH-HcC
Confidence 34899999 9999987211 0 0356679999999999999 899
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEeecc--ccccCCCccccchhhcCCc
Q 028423 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDVKGS 171 (209)
Q Consensus 95 ~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~~~~--g~~~~l~~~~i~~~~i~~~ 171 (209)
.++.++|.+|+|.+|+++++.|++.||++.++...+ .+|+.+++.++++|+|++.... ++...+++++++ .++++
T Consensus 43 ~~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~ 120 (304)
T PRK09434 43 GESGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQG 120 (304)
T ss_pred CCceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCC
Confidence 999999999999999999999999999999988765 4899999999888999975443 333345555543 36789
Q ss_pred cEEEEeCCcc---------HHHHHHHHhcCCeEEEecC
Q 028423 172 KVLHLALYLK---------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 172 d~v~i~g~~~---------~~~~~~ar~~g~~vsfd~~ 200 (209)
+++|++++.. ...++.+++.|++++||..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~ 158 (304)
T PRK09434 121 EWLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPN 158 (304)
T ss_pred CEEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCC
Confidence 9999988642 1245678999999999975
No 36
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.79 E-value=2e-18 Score=148.77 Aligned_cols=152 Identities=22% Similarity=0.182 Sum_probs=120.2
Q ss_pred EEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCe
Q 028423 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (209)
Q Consensus 18 Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~ 97 (209)
|+.+-.|+.+|+++.+ ++++ .|+...+ ......+||++.|+|++|+ |||.++
T Consensus 4 i~~~~~~p~~d~~~~~-----~~~~--~~~~~~~--------------------~~~~~~~GG~~~NvA~~l~-~lG~~~ 55 (309)
T PRK10294 4 IYTLTLAPSLDSATIT-----PQIY--PEGKLRC--------------------SAPVFEPGGGGINVARAIA-HLGGSA 55 (309)
T ss_pred EEEEecChHHeEEEEe-----Ccee--eCCeEEe--------------------ccceecCCccHHHHHHHHH-HcCCCe
Confidence 5666669999999999 7776 3344332 2668889999999999999 899999
Q ss_pred EEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccch-----hhcCCcc
Q 028423 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-----EDVKGSK 172 (209)
Q Consensus 98 ~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~-----~~i~~~d 172 (209)
.+++.+|+ .+|+.+++.|++.||++.++...++.++.+.++++++|+|+++.++++. ++.++++. +.+++++
T Consensus 56 ~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 132 (309)
T PRK10294 56 TAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQVLEIESGA 132 (309)
T ss_pred EEEEEecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCCC--CCHHHHHHHHHHHHhcCCCC
Confidence 99999996 7999999999999999999987655455556667788999888776653 55544432 2467899
Q ss_pred EEEEeCCccH--------HHHHHHHhcCCeEEEecC
Q 028423 173 VLHLALYLKK--------LLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 173 ~v~i~g~~~~--------~~~~~ar~~g~~vsfd~~ 200 (209)
++|++|+.+. ..++.+++.|++++||..
T Consensus 133 ~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 168 (309)
T PRK10294 133 ILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSS 168 (309)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 9999998752 356778999999999964
No 37
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.77 E-value=6.2e-18 Score=144.08 Aligned_cols=149 Identities=23% Similarity=0.239 Sum_probs=117.5
Q ss_pred EEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeE
Q 028423 19 LGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG 98 (209)
Q Consensus 19 l~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~ 98 (209)
.+++ ++++|+++.+ +++| + +.... ..+....+||+++|+|++|+ |||.++.
T Consensus 4 ~~~~-~~~~D~~~~~-----~~~~-~-~~~~~--------------------~~~~~~~~GG~~~Nva~~la-~lG~~v~ 54 (289)
T cd01164 4 TVTL-NPAIDLTIEL-----DQLQ-P-GEVNR--------------------VSSTRKDAGGKGINVARVLK-DLGVEVT 54 (289)
T ss_pred EEec-ChHHeEEEEc-----Cccc-C-Cceee--------------------cccccccCCcchhHHHHHHH-HcCCCeE
Confidence 3677 9999999999 6776 2 32222 13678899999999999999 8999999
Q ss_pred EEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccch------hhcCCcc
Q 028423 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSK 172 (209)
Q Consensus 99 lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~------~~i~~~d 172 (209)
++|.||+| +|+++++.|++.||++.++... .+|+.++++++++|+++.+...+. .+++++++. +.++++|
T Consensus 55 ~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 130 (289)
T cd01164 55 ALGFLGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEEDGTETEINEPGP--EISEEELEALLEKLKALLKKGD 130 (289)
T ss_pred EEEEccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCCC--CCCHHHHHHHHHHHHHhcCCCC
Confidence 99999998 8999999999999999988764 568888888887788877765543 354444331 3468899
Q ss_pred EEEEeCCccH--------HHHHHHHhcCCeEEEecC
Q 028423 173 VLHLALYLKK--------LLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 173 ~v~i~g~~~~--------~~~~~ar~~g~~vsfd~~ 200 (209)
++|++++.+. ..++.+++.+++++||..
T Consensus 131 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~ 166 (289)
T cd01164 131 IVVLSGSLPPGVPADFYAELVRLAREKGARVILDTS 166 (289)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEEECC
Confidence 9999987652 345677889999999973
No 38
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.77 E-value=1e-17 Score=144.31 Aligned_cols=143 Identities=20% Similarity=0.252 Sum_probs=113.1
Q ss_pred ceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeEEEEEe
Q 028423 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (209)
Q Consensus 24 ~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~lig~V 103 (209)
|+++|+++.+ +++|.. +...+ ......+||+++|+|++|+ |||.++.++|.+
T Consensus 8 np~~D~~~~~-----~~~~~~--~~~~~--------------------~~~~~~~GG~~~NvA~~la-~LG~~~~~~~~v 59 (309)
T PRK13508 8 NPSIDISYPL-----DELKLD--TVNRV--------------------VDVSKTAGGKGLNVTRVLS-EFGENVLATGLI 59 (309)
T ss_pred ChHHeEEEEe-----CCeeeC--CeEEe--------------------cceeecCCchHHHHHHHHH-HcCCCeEEEEEe
Confidence 9999999999 677643 23222 2578889999999999999 899999999999
Q ss_pred cCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccc------hhhcCCccEEEEe
Q 028423 104 GDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVKGSKVLHLA 177 (209)
Q Consensus 104 G~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~------~~~i~~~d~v~i~ 177 (209)
|+ .+|+.+++.|++ ||+++++.. +++|+.++++++ +|+|+++.++++. +..++.. .+.++++|++|++
T Consensus 60 Gd-~~G~~i~~~l~~-gI~~~~~~~-~~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (309)
T PRK13508 60 GG-ELGQFIAEHLDD-QIKHAFYKI-KGETRNCIAILH-EGQQTEILEKGPE--ISVQEADGFLHHFKQLLESVEVVAIS 133 (309)
T ss_pred cC-hhHHHHHHHHHc-CCCceEEEC-CCCCeeeEEEEe-CCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 95 789999999999 999997654 457888888876 7899998877653 3332221 2457899999999
Q ss_pred CCcc--------HHHHHHHHhcCCeEEEecC
Q 028423 178 LYLK--------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 178 g~~~--------~~~~~~ar~~g~~vsfd~~ 200 (209)
++.+ ....+.||++|++++||..
T Consensus 134 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 164 (309)
T PRK13508 134 GSLPAGLPVDYYAQLIELANQAGKPVVLDCS 164 (309)
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCEEEEECC
Confidence 9763 2345678999999999974
No 39
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.77 E-value=1.1e-17 Score=152.31 Aligned_cols=162 Identities=16% Similarity=0.171 Sum_probs=115.7
Q ss_pred CCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhc
Q 028423 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (209)
Q Consensus 14 ~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rL 93 (209)
...+|+|+| ++++|+++.++. ++++.+.....+. .......+|| ++|+|++|+ ||
T Consensus 9 ~~~~ilviG-~~~lD~~~~~~~---~~~~~~~~~~~~~-------------------~~~~~~~~GG-a~NvA~~la-~L 63 (473)
T PRK11316 9 ERAGVLVVG-DVMLDRYWYGPT---SRISPEAPVPVVK-------------------VNQIEERPGG-AANVAMNIA-SL 63 (473)
T ss_pred CCCcEEEEC-ccEEeeeeeccc---ceeCCCCCCCEEE-------------------eeeEEecCcH-HHHHHHHHH-Hc
Confidence 445699999 999999998632 2332111111110 1257788999 699999999 89
Q ss_pred CCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccc---hhhcCC
Q 028423 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI---AEDVKG 170 (209)
Q Consensus 94 G~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~---~~~i~~ 170 (209)
|.++.|+|.+|+|.+|+++++.|++.||+++++...+.+|+.++++++.+++............+.++++. .+.+++
T Consensus 64 G~~v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 143 (473)
T PRK11316 64 GAQARLVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALPS 143 (473)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999998876445799999988754443222111111222333221 345889
Q ss_pred ccEEEEeCCcc------HHHHHHHHhcCCeEEEecC
Q 028423 171 SKVLHLALYLK------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 171 ~d~v~i~g~~~------~~~~~~ar~~g~~vsfd~~ 200 (209)
++++|++++.. ...++.++++|++++||..
T Consensus 144 ~~~v~is~~~~~~~~~~~~~~~~~k~~g~~vv~Dp~ 179 (473)
T PRK11316 144 IGALVLSDYAKGALASVQAMIQLARKAGVPVLIDPK 179 (473)
T ss_pred CCEEEEecCCccchhHHHHHHHHHHhcCCeEEEeCC
Confidence 99999987642 3456778999999999974
No 40
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.76 E-value=1.8e-18 Score=150.84 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=121.1
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhc-CC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF-GV 95 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rL-G~ 95 (209)
+++++| .+++|.+...+ + ..+...+||+++|+|++++ +| |.
T Consensus 1 ~~~~~G-~~~~d~i~~~~-----------~-------------------------~~~~~~~GG~~~N~A~~~~-~l~g~ 42 (328)
T cd01943 1 DFTTLG-MFIIDEIEYPD-----------S-------------------------EPVTNVLGGAGTYAILGAR-LFLPP 42 (328)
T ss_pred CccccC-cEEeeccccCC-----------C-------------------------CccccccCCchhhHhhcee-eecCC
Confidence 578999 99999988762 1 1467789999999999999 79 55
Q ss_pred --Ce--EEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCC
Q 028423 96 --PC--GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (209)
Q Consensus 96 --~~--~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~ 170 (209)
++ .+++++|+| +|+++++.|++.||++++ ...+ .+|+.++++++++|+|.++++.+++..+++++++...+..
T Consensus 43 ~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 120 (328)
T cd01943 43 PLSRSISWIVDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNSTPLIR 120 (328)
T ss_pred ccccceeeEEecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccccccccccccccccC
Confidence 77 899999999 999999999999999998 5554 4899999998888999999888887888888888777889
Q ss_pred ccEEEEeCCccH------HHHHHHHh------cCCeEEEecCc
Q 028423 171 SKVLHLALYLKK------LLFNLARD------SLSSFSFYSII 201 (209)
Q Consensus 171 ~d~v~i~g~~~~------~~~~~ar~------~g~~vsfd~~~ 201 (209)
++++|+++.... ..++.|++ ++.++++|..+
T Consensus 121 a~~~hl~~~~~~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~ 163 (328)
T cd01943 121 SSCIHLICSPERCASIVDDIINLFKLLKGNSPTRPKIVWEPLP 163 (328)
T ss_pred CCeEEEECCHHHHHHHHHHHHHHHHhhccccCCccEEEEecCC
Confidence 999999887532 24466777 89999999754
No 41
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.76 E-value=1.1e-17 Score=144.25 Aligned_cols=146 Identities=15% Similarity=0.208 Sum_probs=113.3
Q ss_pred ceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeEEEEEe
Q 028423 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (209)
Q Consensus 24 ~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~lig~V 103 (209)
++.+|+.+.+ +++|.. +...+ .+....+||+++|+|++|+ |||.++.++|.+
T Consensus 7 ~p~~d~~~~~-----~~~~~~--~~~~~--------------------~~~~~~~GG~~~NvA~~la-~LG~~v~~i~~v 58 (309)
T TIGR01231 7 NPSVDISYPL-----TALKLD--TVNRV--------------------QEVSKTAGGKGLNVTRVLA-QVGDPVLASGFL 58 (309)
T ss_pred chHHeEEEEc-----CCeeeC--ceEee--------------------ceeeecCCccHHHHHHHHH-HcCCCeEEEEEe
Confidence 8999999999 666643 23222 2678899999999999999 899999999999
Q ss_pred cCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCc--c--ccchhhcCCccEEEEeCC
Q 028423 104 GDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQA--D--ELIAEDVKGSKVLHLALY 179 (209)
Q Consensus 104 G~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~--~--~i~~~~i~~~d~v~i~g~ 179 (209)
|+ ++|+++++.|++.|||++++... +.|+.++++++ +|+|+++.++++...... + +.....++++|+||++++
T Consensus 59 G~-~~G~~i~~~l~~~GV~~~~~~~~-~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 135 (309)
T TIGR01231 59 GG-KLGEFIEKELDHSDIKHAFYKIS-GETRNCIAILH-EGQQTEILEQGPEISNQEAAGFLKHFEQLLEKVEVVAISGS 135 (309)
T ss_pred cC-hhHHHHHHHHHHcCCceeEEECC-CCCEEeEEEEe-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCEEEEECC
Confidence 96 59999999999999999988764 46777877774 799999888775322111 0 111245789999999997
Q ss_pred cc--------HHHHHHHHhcCCeEEEecC
Q 028423 180 LK--------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 180 ~~--------~~~~~~ar~~g~~vsfd~~ 200 (209)
.+ ...++.||++|++++||..
T Consensus 136 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 164 (309)
T TIGR01231 136 LPKGLPQDYYAQIIERCQNKGVPVVLDCS 164 (309)
T ss_pred CCCCcCHHHHHHHHHHHHhCCCeEEEECC
Confidence 53 2356778999999999974
No 42
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.76 E-value=1.6e-17 Score=142.50 Aligned_cols=145 Identities=22% Similarity=0.248 Sum_probs=114.7
Q ss_pred ceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeEEEEEe
Q 028423 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (209)
Q Consensus 24 ~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~lig~V 103 (209)
++.+|+++.+ +++ .+ |....+ .+...++||++.|+|++++ |||.++.++|.|
T Consensus 7 ~~~~D~~~~~-----~~~-~~-~~~~~~--------------------~~~~~~~GG~~~N~a~~l~-~lg~~~~~i~~v 58 (303)
T TIGR03168 7 NPAIDLTIEV-----DGL-TP-GEVNRV--------------------AAVRKDAGGKGINVARVLA-RLGAEVVATGFL 58 (303)
T ss_pred chHHeEEEEc-----Ccc-cc-Cceeec--------------------CcccccCCcchhhHHHHHH-HcCCCeEEEEEe
Confidence 7889999999 554 22 332221 3678999999999999999 899999999999
Q ss_pred cCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccch------hhcCCccEEEEe
Q 028423 104 GDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSKVLHLA 177 (209)
Q Consensus 104 G~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~------~~i~~~d~v~i~ 177 (209)
|+| +|+.+++.|++.||++.++... +.|+.++++++++|+|+.+.+.+. .+++++++. +.++++|++|++
T Consensus 59 G~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i~ 134 (303)
T TIGR03168 59 GGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESSGEETELNEPGP--EISEEELEQLLEKLRELLASGDIVVIS 134 (303)
T ss_pred CCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCCCCEEEEeCcCC--CCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 999 7999999999999999998764 567888888888888887766553 355554431 348899999999
Q ss_pred CCcc--------HHHHHHHHhcCCeEEEecC
Q 028423 178 LYLK--------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 178 g~~~--------~~~~~~ar~~g~~vsfd~~ 200 (209)
++.. ...++.++++|++++||..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~ 165 (303)
T TIGR03168 135 GSLPPGVPPDFYAQLIAIARKRGAKVILDTS 165 (303)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
Confidence 8742 2355778899999999964
No 43
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.71 E-value=3.3e-16 Score=130.98 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=102.7
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
+|+++| .+++|++... + .....+||+++|+|++|+ |||.+
T Consensus 1 ~il~iG-~~~iD~~~~~-----~---------------------------------~~~~~~GG~~~Nva~~la-~lG~~ 40 (254)
T cd01937 1 KIVIIG-HVTIDEIVTN-----G---------------------------------SGVVKPGGPATYASLTLS-RLGLT 40 (254)
T ss_pred CeEEEc-ceeEEEEecC-----C---------------------------------ceEEecCchhhhHHHHHH-HhCCC
Confidence 589999 9999999764 0 346779999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHL 176 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i 176 (209)
+.++|.+|+|..|+ ++.|++.||++..+ ....|+.+.+.++++|+|.++.+.++....... ...++++|++|+
T Consensus 41 ~~~i~~vG~D~~g~--~~~l~~~gv~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 113 (254)
T cd01937 41 VKLVTKVGRDYPDK--WSDLFDNGIEVISL--LSTETTTFELNYTNEGRTRTLLAKCAAIPDTES---PLSTITAEIVIL 113 (254)
T ss_pred eEEEEeeCCCchHH--HHHHHHCCcEEEEe--cCCCeEEEEEEecCCCCeeeeeccccCCccccc---ccccCcccEEEE
Confidence 99999999999999 78999999996432 334566666767777899888777654433221 235788999999
Q ss_pred eCCccHHHHHHHHhcCCeEEEecC
Q 028423 177 ALYLKKLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 177 ~g~~~~~~~~~ar~~g~~vsfd~~ 200 (209)
++...+ ....+.+..++|+||..
T Consensus 114 ~~~~~~-~~~~~~~~~~~v~~D~~ 136 (254)
T cd01937 114 GPVPEE-ISPSLFRKFAFISLDAQ 136 (254)
T ss_pred CCCcch-hcHHHHhhhhheeEccc
Confidence 876433 33333333389999974
No 44
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=7.3e-16 Score=126.84 Aligned_cols=158 Identities=16% Similarity=0.257 Sum_probs=131.9
Q ss_pred CCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhc
Q 028423 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (209)
Q Consensus 14 ~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rL 93 (209)
+...|+|+| .+.+|++-.+ +++|.++...+. + +-.++-||.|.|+...|. +|
T Consensus 3 ~~k~VLcVG-~~~lD~iTiv-----d~~~fe~~~~r~------------~---------~g~wqRgG~asNvcTvlr-lL 54 (308)
T KOG2947|consen 3 EPKQVLCVG-CTVLDVITIV-----DKYPFEDSEIRC------------L---------SGRWQRGGNASNVCTVLR-LL 54 (308)
T ss_pred CcceEEEec-cEEEEEEEec-----cCCCCCccceeh------------h---------hhhhhcCCCcchHHHHHH-Hh
Confidence 346799999 9999999999 888987644322 1 567889999999999999 89
Q ss_pred CCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEc-CCCCeeEeeccccccCCCccccchhhcCCcc
Q 028423 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD-ASGNRTMRPCLSNAVKIQADELIAEDVKGSK 172 (209)
Q Consensus 94 G~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~-~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d 172 (209)
|+++.|+|.+.....-+++++.|++.|||+++....+...+.+.|+++ ..|.||++++..+.+.++.+++..-.+.+..
T Consensus 55 G~~cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kvdl~qy~ 134 (308)
T KOG2947|consen 55 GAPCEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKVDLTQYG 134 (308)
T ss_pred CCchheeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhcccceee
Confidence 999999999999999999999999999999999887776677777776 4689999999888889998888877899999
Q ss_pred EEEEeCCccHHHHHHH-----H------hcCCeEEEec
Q 028423 173 VLHLALYLKKLLFNLA-----R------DSLSSFSFYS 199 (209)
Q Consensus 173 ~v~i~g~~~~~~~~~a-----r------~~g~~vsfd~ 199 (209)
|||+.+..+.+.+++. + +.++.||.|-
T Consensus 135 WihfE~Rnp~etlkM~~~I~~~N~r~pe~qrI~vSvd~ 172 (308)
T KOG2947|consen 135 WIHFEARNPSETLKMLQRIDAHNTRQPEEQRIRVSVDV 172 (308)
T ss_pred eEEEecCChHHHHHHHHHHHHhhcCCCccceEEEEEEe
Confidence 9999999876655432 1 2567778774
No 45
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.65 E-value=2.6e-15 Score=131.49 Aligned_cols=141 Identities=12% Similarity=0.069 Sum_probs=112.7
Q ss_pred cCCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHH
Q 028423 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (209)
Q Consensus 12 ~~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~ 91 (209)
..+.++|+++| +.++|+++.+ |. .....+||+++|+|++|+
T Consensus 8 ~~~~~~vlvvG-~~~~D~i~~~------------g~-------------------------~~~~~~GG~a~N~A~ala- 48 (335)
T PLN02630 8 PIPQRRVLIVG-NYCHDVLIQN------------GS-------------------------VTAESLGGAASFISNVLD- 48 (335)
T ss_pred CCCCCCEEEEe-eeeeeEEEeC------------Cc-------------------------EEEEecCcHHHHHHHHHH-
Confidence 46788999999 9999999886 11 135679999999999999
Q ss_pred hcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcC-----CCCeeEeeccccccCCCccccchh
Q 028423 92 GFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-----SGNRTMRPCLSNAVKIQADELIAE 166 (209)
Q Consensus 92 rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~-----~GeR~~~~~~g~~~~l~~~~i~~~ 166 (209)
|||.++.|+|+||+|.. .+|+...+.....+|+.++++.++ +|+|.++.+++++..+++++++..
T Consensus 49 rLG~~~~lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~~ 118 (335)
T PLN02630 49 ALSVECELVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDM 118 (335)
T ss_pred HcCCceEEEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCHH
Confidence 89999999999999952 377766554434479999998876 578999999999999999998866
Q ss_pred hcCCccEEEEeCCccHH----HHHHHHh-----cCCeEEEecCc
Q 028423 167 DVKGSKVLHLALYLKKL----LFNLARD-----SLSSFSFYSII 201 (209)
Q Consensus 167 ~i~~~d~v~i~g~~~~~----~~~~ar~-----~g~~vsfd~~~ 201 (209)
.++.++++++.+..+.. .++.||. .|+.++||..+
T Consensus 119 ~~~~~~~~~l~~ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~ 162 (335)
T PLN02630 119 RYEFGMAVGVAGEILPETLERMVEICDVVVVDIQALIRVFDPVD 162 (335)
T ss_pred HhcccceeeecCCCcHHHHHHHHHHhhhheeccCceEEecCCcc
Confidence 78889999998876433 3445565 67888888754
No 46
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.54 E-value=8e-14 Score=118.18 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=84.2
Q ss_pred ceEecCchHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecC-CCCeeEEEEE--cCCCCeeEee
Q 028423 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLV--DASGNRTMRP 150 (209)
Q Consensus 74 ~~~~~GG~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~-~~T~~~~v~i--~~~GeR~~~~ 150 (209)
....+||+++|+|.+++ ||| ++.++|.||+| +|+.++++|++.||+++++.+.+ .+|....... +.+++++...
T Consensus 20 ~~~~~GG~a~N~a~~la-~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~ 96 (277)
T cd01946 20 VDKALGGSATYFSLSAS-YFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDT 96 (277)
T ss_pred eeeccCchHHHHHHHHH-Hhc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhh
Confidence 34668999999999999 898 79999999999 89999999999999999998864 3452211100 1134444443
Q ss_pred ccccccCCCccccchhhcCCccEEEEeCCccH---HHHHHHHhcCCeEEEec
Q 028423 151 CLSNAVKIQADELIAEDVKGSKVLHLALYLKK---LLFNLARDSLSSFSFYS 199 (209)
Q Consensus 151 ~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~~~---~~~~~ar~~g~~vsfd~ 199 (209)
..+....+.+. + .+.+++++++|+++...+ ..++.+++. .+|+||.
T Consensus 97 ~~~~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~v~~D~ 145 (277)
T cd01946 97 DLNVFADFDPQ-L-PEHYKDSEFVFLGNIAPELQREVLEQVKDP-KLVVMDT 145 (277)
T ss_pred hhhHHhhcCCC-C-hHHhhcCCEEEECCCCHHHHHHHHHHHHhC-CEEEEcc
Confidence 33322333322 2 245789999999876543 345566766 8999995
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=1e-12 Score=115.18 Aligned_cols=163 Identities=20% Similarity=0.281 Sum_probs=116.7
Q ss_pred CCCeEEEecCceeEEEEeecCHHHH-hhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHh
Q 028423 14 QAALILGLQPAALIDHVARVDWSLL-DQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (209)
Q Consensus 14 ~~~~Il~iG~~~~vD~i~~v~~~~l-~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~r 92 (209)
.+.+|+++| ..++|.++.-..+-+ ++-|.| ++ . + ......+|| |+|+|.+++ .
T Consensus 9 ~~~kVLVvG-DvmLDrY~~G~~~RISPEAPVP-----Vv---------~-v--------~~e~~rlGG-AaNVa~Nia-s 62 (467)
T COG2870 9 KQAKVLVVG-DVMLDRYWYGKVSRISPEAPVP-----VV---------K-V--------EKEEERLGG-AANVAKNIA-S 62 (467)
T ss_pred cCCcEEEEc-ceeeeeeccccccccCCCCCCc-----eE---------E-e--------ccccccccc-HHHHHHHHH-H
Confidence 467899999 999999999743211 222322 11 1 1 256788999 889999999 6
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCC-ccccc---hhhc
Q 028423 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQ-ADELI---AEDV 168 (209)
Q Consensus 93 LG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~-~~~i~---~~~i 168 (209)
||.++.++|.+|+|..|+.+.+.|.+.+|+...+.....+|..-.-++.. .+.-+..+........ .+.+- .+.+
T Consensus 63 LGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~-nQQllRvD~Ee~~~~~~~~~ll~~~~~~l 141 (467)
T COG2870 63 LGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSR-NQQLLRLDFEEKFPIEDENKLLEKIKNAL 141 (467)
T ss_pred cCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecc-cceEEEecccccCcchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999966665555688888777763 3443434332111111 11111 2468
Q ss_pred CCccEEEEeCCc------cHHHHHHHHhcCCeEEEecCccc
Q 028423 169 KGSKVLHLALYL------KKLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 169 ~~~d~v~i~g~~------~~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
++.|++.++.|. .+..+++||++|++|..|-=.-.
T Consensus 142 ~~~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg~D 182 (467)
T COG2870 142 KSFDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKGKD 182 (467)
T ss_pred hcCCEEEEeccccccchhHHHHHHHHHHcCCcEEECCCCcc
Confidence 899999999986 25678999999999999864433
No 48
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.38 E-value=4.9e-12 Score=108.84 Aligned_cols=145 Identities=21% Similarity=0.293 Sum_probs=117.3
Q ss_pred ceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeEEEEEe
Q 028423 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (209)
Q Consensus 24 ~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~lig~V 103 (209)
|+.+|+.+.+ +.+- .|....+ ......+||++.|||..|+ +||.++...|.+
T Consensus 8 NPaiD~~~~l-----~~l~--~g~vNr~--------------------~~~~~~aGGKGINVa~vL~-~lG~~~~a~Gfl 59 (310)
T COG1105 8 NPALDYTVFL-----DELE--LGEVNRV--------------------RAVTKTAGGKGINVARVLK-DLGIPVTALGFL 59 (310)
T ss_pred ChhHhheeec-----cccc--ccceeee--------------------ccceecCCCCceeHHHHHH-HcCCCceEEEec
Confidence 8899999998 3333 2322221 3789999999999999999 799999999999
Q ss_pred cCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcC-CCCeeEeeccccccCCCccccch------hhcCCccEEEE
Q 028423 104 GDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRPCLSNAVKIQADELIA------EDVKGSKVLHL 176 (209)
Q Consensus 104 G~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~-~GeR~~~~~~g~~~~l~~~~i~~------~~i~~~d~v~i 176 (209)
|.+ .|+++.+.|++.||...++.+ +++|..++.+.+. +|+-|-+..+|. .+++++++. ..+++.|+|.+
T Consensus 60 Gg~-tg~~~~~~l~~~gi~~~fv~v-~g~TRinvki~~~~~~~~Tein~~Gp--~is~~~~~~~l~~~~~~l~~~d~Vvl 135 (310)
T COG1105 60 GGF-TGEFFVALLKDEGIPDAFVEV-KGDTRINVKILDEEDGEETEINFPGP--EISEAELEQFLEQLKALLESDDIVVL 135 (310)
T ss_pred CCc-cHHHHHHHHHhcCCCceEEEc-cCCCeeeEEEEecCCCcEEEecCCCC--CCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 998 599999999999999998876 6889999999886 566777776665 666655542 24788999999
Q ss_pred eCCcc--------HHHHHHHHhcCCeEEEecC
Q 028423 177 ALYLK--------KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 177 ~g~~~--------~~~~~~ar~~g~~vsfd~~ 200 (209)
+|..+ ...++.+|+.|++|.+|+.
T Consensus 136 sGSlP~g~~~d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 136 SGSLPPGVPPDAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred eCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC
Confidence 99775 2466888999999999984
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.14 E-value=4.2e-10 Score=89.85 Aligned_cols=89 Identities=22% Similarity=0.256 Sum_probs=73.1
Q ss_pred eEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC
Q 028423 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~ 96 (209)
.|+++| ++++|+++.+ +++|.++..... ......+||++.|+|.+|+ +||.+
T Consensus 1 ~v~~iG-~~~~D~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~GG~~~n~a~~l~-~LG~~ 52 (196)
T cd00287 1 RVLVVG-SLLVDVILRV-----DALPLPGGLVRP---------------------GDTEERAGGGAANVAVALA-RLGVS 52 (196)
T ss_pred CEEEEc-cceEEEEEEe-----ccCCCCCCeEEe---------------------ceeeecCCCcHHHHHHHHH-HCCCc
Confidence 489999 9999999999 777876433221 2678999999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEE
Q 028423 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHL 176 (209)
Q Consensus 97 ~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i 176 (209)
+.++| +|++|+
T Consensus 53 ~~~~~---------------------------------------------------------------------~~~v~i 63 (196)
T cd00287 53 VTLVG---------------------------------------------------------------------ADAVVI 63 (196)
T ss_pred EEEEE---------------------------------------------------------------------ccEEEE
Confidence 99999 799999
Q ss_pred eCCcc--H---HHHHHHHhcCCeEEEecCcc
Q 028423 177 ALYLK--K---LLFNLARDSLSSFSFYSIII 202 (209)
Q Consensus 177 ~g~~~--~---~~~~~ar~~g~~vsfd~~~~ 202 (209)
+++.+ + ..++.+++.|++++||....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 64 SGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred ecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 99775 2 34567788999999998543
No 50
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=97.70 E-value=7.3e-05 Score=67.32 Aligned_cols=76 Identities=30% Similarity=0.437 Sum_probs=58.7
Q ss_pred cCCCCeEEEecCceeEEEEeecCHHHHhhCCCCCCCeeeecHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHH
Q 028423 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (209)
Q Consensus 12 ~~~~~~Il~iG~~~~vD~i~~v~~~~l~~~p~~~g~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~ 91 (209)
++...+=+|+| ...+|..+.+++ -.+-+|++.- ....+..||.+.|.|.+++
T Consensus 337 ~~~~~KPv~vG-a~i~D~~~k~d~-----d~K~dG~sy~---------------------~~~~Qa~GGVarN~A~a~~- 388 (614)
T KOG3009|consen 337 ASTTRKPVSVG-ATIVDFEAKTDE-----DVKDDGGSYN---------------------GQVVQAMGGVARNHADALA- 388 (614)
T ss_pred cccccCceeec-ceEEEeEEeecc-----cccccCCccc---------------------chhhhhccchhhhHHHHHH-
Confidence 33344458999 999999999954 2223444321 2467889999999999999
Q ss_pred hcCCCeEEEEEecCChhHHHHHHH
Q 028423 92 GFGVPCGLIGAYGDDQQGQLFVSN 115 (209)
Q Consensus 92 rLG~~~~lig~VG~D~~G~~i~~~ 115 (209)
|||+.+.||++||+|..|++.+..
T Consensus 389 ~lg~d~~liSavG~d~n~~~~~~~ 412 (614)
T KOG3009|consen 389 RLGCDSVLISAVGDDNNGHFFRQN 412 (614)
T ss_pred HhcCCeeEEEEeccCCcchhhhhh
Confidence 899999999999999888877653
No 51
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=95.28 E-value=0.48 Score=43.39 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=23.3
Q ss_pred CceEecCchHHHHHHHHHHhcCCCeEE
Q 028423 73 PIKTIAGGSVTNTIRGLSVGFGVPCGL 99 (209)
Q Consensus 73 ~~~~~~GG~a~N~A~~la~rLG~~~~l 99 (209)
..+...||.|.-+|..+| ++|+++.+
T Consensus 85 ~~~~rmGGnAgimAn~la-~lg~~~Vi 110 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLS-ELGASRVV 110 (453)
T ss_pred CceEEeCChHHHHHHHHH-hcCCceEE
Confidence 568999999999999999 89999655
No 52
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.49 E-value=9.9 Score=34.71 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeEEEEEecCChhH---HHHHHHHHhCCCccceeEec
Q 028423 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 53 ~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~lig~VG~D~~G---~~i~~~L~~~GVd~~~v~~~ 129 (209)
.+.+|+.++.+.+. .......+|.+++.+..++ -++---.++. ..+.|+ +.+...+++.|+++.++...
T Consensus 63 v~~lE~~la~leg~-----~~av~~~SG~aAi~~al~a-ll~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~ 134 (432)
T PRK06702 63 LAAFEQKLAELEGG-----VGAVATASGQAAIMLAVLN-ICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPN 134 (432)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-hcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCC
Confidence 35667777766542 3566778888998887777 4543222222 344555 55555678889877655210
Q ss_pred CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCc
Q 028423 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 130 ~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~ 201 (209)
++++++...+=.+.++|++.... ++...++||++|+.+..|+..
T Consensus 135 ----------------------------~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 135 ----------------------------LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred ----------------------------CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCC
Confidence 11122211111234455554321 356678889999999999965
Q ss_pred ccccc
Q 028423 202 ITFFS 206 (209)
Q Consensus 202 ~~~~~ 206 (209)
-|-+.
T Consensus 187 ~tP~~ 191 (432)
T PRK06702 187 ATPYL 191 (432)
T ss_pred Cchhh
Confidence 44433
No 53
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=86.68 E-value=7.5 Score=35.70 Aligned_cols=33 Identities=18% Similarity=-0.011 Sum_probs=27.6
Q ss_pred CceEecCchHHHHHHHHHHhcCC-CeEEEEEecCC
Q 028423 73 PIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDD 106 (209)
Q Consensus 73 ~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D 106 (209)
..+...||.|+-.|..+| ++|+ +|.+.+.+...
T Consensus 100 ~~~~~mGGnAgimAn~la-~~g~~~Vil~~p~~~k 133 (445)
T cd01938 100 WDELRMGGNAGLMANRLA-GEGDLKVLLGVPQSSK 133 (445)
T ss_pred CceEEeCChHHHHHHHHH-hcCCceEEEecCCCcH
Confidence 467999999999999999 8999 77777776543
No 54
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=84.19 E-value=21 Score=31.86 Aligned_cols=67 Identities=9% Similarity=-0.020 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcC-CCeEEEEEecCChhHHHHHHHHHhCCCcccee
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG-VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL 126 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG-~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v 126 (209)
+++++.++.+.+ .+......||.+++.+...+ -+. ....++....-...-..+.+.++..|+++.++
T Consensus 64 ~~le~~la~l~g-----~~~~v~~ssG~~Ai~~al~a-l~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~v 131 (390)
T PRK08133 64 TMFQERLAALEG-----AEACVATASGMAAILAVVMA-LLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFV 131 (390)
T ss_pred HHHHHHHHHHhC-----CCcEEEECCHHHHHHHHHHH-HhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEE
Confidence 455555555543 23566778888888776655 343 12333333222222244555677778776655
No 55
>PRK05967 cystathionine beta-lyase; Provisional
Probab=83.69 E-value=19 Score=32.46 Aligned_cols=121 Identities=14% Similarity=0.049 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCC
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGP 132 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~ 132 (209)
+.+++.++.++. .........|.++..++.++ -+.- ...++..-+-...-+++.+.+++.|+++..+....
T Consensus 67 ~~Le~~la~le~-----~~~~v~~sSG~aAi~~~l~a-ll~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~-- 138 (395)
T PRK05967 67 DALCKAIDALEG-----SAGTILVPSGLAAVTVPFLG-FLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEI-- 138 (395)
T ss_pred HHHHHHHHHHhC-----CCCEEEECcHHHHHHHHHHH-hcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCC--
Confidence 456666665553 12345555576766666666 3442 23333322222222344567888888776542100
Q ss_pred CeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCcccc
Q 028423 133 TGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIITF 204 (209)
Q Consensus 133 T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~~ 204 (209)
. +.+....-++.++|+++... ++...++||++|+.+..|+.-.+.
T Consensus 139 -----------~----------------e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p 191 (395)
T PRK05967 139 -----------G----------------AGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATP 191 (395)
T ss_pred -----------H----------------HHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCc
Confidence 0 11111111245667776422 245667889999999999976665
Q ss_pred cccCC
Q 028423 205 FSFSP 209 (209)
Q Consensus 205 ~~~~~ 209 (209)
..+.|
T Consensus 192 ~~~~p 196 (395)
T PRK05967 192 LYFRP 196 (395)
T ss_pred eecCh
Confidence 54443
No 56
>PRK08114 cystathionine beta-lyase; Provisional
Probab=81.96 E-value=24 Score=31.81 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHHHHHHHHHhCCCcccee
Q 028423 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL 126 (209)
Q Consensus 53 ~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v 126 (209)
.+.+|+.++.|++ ...-.....|.++..++.++ -+.. ...+++.-.-...-+++.+.|++.||++.++
T Consensus 64 ~~~le~~la~LEg-----~~~a~~~~SGmaAi~~~~~~-ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 64 HFSLQEAMCELEG-----GAGCALYPCGAAAVANAILA-FVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred HHHHHHHHHHHhC-----CCeEEEEhHHHHHHHHHHHH-HcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 4567777777764 23566777898888887777 4543 2333332222233355556788899987654
No 57
>PRK05968 hypothetical protein; Provisional
Probab=78.12 E-value=45 Score=29.69 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHH---HHHHHHHhCCCccceeEec
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQ---LFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~---~i~~~L~~~GVd~~~v~~~ 129 (209)
+++|+.++.+.+ .+......+|.+++.+...+ .++- +..++.. ..++. .+.+.++..|+.+.++...
T Consensus 66 ~~le~~lA~l~g-----~~~av~~~sG~~Ai~~al~a-l~~~Gd~Vl~~~---~~y~~t~~~~~~~~~~~G~~v~~vd~~ 136 (389)
T PRK05968 66 RAFEEMLAKLEG-----AEDARGFASGMAAISSTVLS-FVEPGDRIVAVR---HVYPDAFRLFETILKRMGVEVDYVDGR 136 (389)
T ss_pred HHHHHHHHHHhC-----CCcEEEECCHHHHHHHHHHH-HhCCCCEEEEeC---CCchHHHHHHHHHHHHcCceEEEeCCC
Confidence 456666665543 12445567777777655555 3332 2233322 12332 3445566667766543210
Q ss_pred CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCc
Q 028423 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 130 ~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~ 201 (209)
+++++. ..+.+.++|+++... ++...++||++|+.+..|+.-
T Consensus 137 -----------------------------d~~~l~-~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 137 -----------------------------DEEAVA-KALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred -----------------------------CHHHHH-HhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 112221 112345666654322 234567788999999999865
Q ss_pred ccc
Q 028423 202 ITF 204 (209)
Q Consensus 202 ~~~ 204 (209)
-++
T Consensus 187 a~~ 189 (389)
T PRK05968 187 ASP 189 (389)
T ss_pred cch
Confidence 444
No 58
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=77.83 E-value=50 Score=29.26 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhH---HHHHHHHHhCCCccceeEec
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G---~~i~~~L~~~GVd~~~v~~~ 129 (209)
+++++.++++.+ .+......+|.+++.+...+ -+.- ...++. +..+| ..+.+.++..|+++.++...
T Consensus 57 ~~le~~la~l~g-----~~~~~~~~sG~~Ai~~al~a-l~~~Gd~Vl~~---~~~~~~t~~~~~~~~~~~g~~v~~v~~~ 127 (380)
T TIGR01325 57 AAFEERIAALEG-----AERAVATATGMSAIQAALMT-LLQAGDHVVAS---RSLFGSTVGFISEILPRFGIEVSFVDPT 127 (380)
T ss_pred HHHHHHHHHHhC-----CCcEEEECCHHHHHHHHHHH-HhCCCCEEEEe---cCCcchHHHHHHHHHHHhCCEEEEECCC
Confidence 455565665442 23566788888888877655 3432 223332 22333 23455677778765543211
Q ss_pred CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCc
Q 028423 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 130 ~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~ 201 (209)
+++.+....-.+.++|+++... ++...+++|++|+.+..|..-
T Consensus 128 -----------------------------d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~ 178 (380)
T TIGR01325 128 -----------------------------DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVF 178 (380)
T ss_pred -----------------------------CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 0011100000123455543221 345667888899999999875
Q ss_pred cccc
Q 028423 202 ITFF 205 (209)
Q Consensus 202 ~~~~ 205 (209)
.+++
T Consensus 179 ~~~~ 182 (380)
T TIGR01325 179 ATPV 182 (380)
T ss_pred cccc
Confidence 5543
No 59
>PRK09028 cystathionine beta-lyase; Provisional
Probab=77.79 E-value=38 Score=30.46 Aligned_cols=116 Identities=13% Similarity=-0.002 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhH---HHHHHHHHhCCCccceeEec
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G---~~i~~~L~~~GVd~~~v~~~ 129 (209)
..+++.++.+.+. .......||.++..++..+ -+.- ...++. +..++ +.+.+.+++.|+++.++...
T Consensus 64 ~~Le~~iA~le~~-----~~~~~~~sG~~Ai~~~l~a-ll~~GD~Vvv~---~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 64 FAFQAAIVELEGG-----AGTALYPSGAAAISNALLS-FLKAGDHLLMV---DSCYEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred HHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-HhCCCCEEEEE---CCCcHHHHHHHHHhhhhcceEEEEECCC
Confidence 4566666665531 3567888898887777666 3432 222222 22333 33445666777766543211
Q ss_pred CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCc
Q 028423 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 130 ~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~ 201 (209)
+. +.+....-.+.++|+++... ++...++||++|+.+..|+.-
T Consensus 135 ~~-----------------------------e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~ 185 (394)
T PRK09028 135 IG-----------------------------EGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTW 185 (394)
T ss_pred CH-----------------------------HHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCc
Confidence 00 00111111234555554322 245668889999999999965
Q ss_pred cccccc
Q 028423 202 ITFFSF 207 (209)
Q Consensus 202 ~~~~~~ 207 (209)
-+.+.+
T Consensus 186 a~p~~~ 191 (394)
T PRK09028 186 ASPINS 191 (394)
T ss_pred cccccC
Confidence 544433
No 60
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=76.88 E-value=31 Score=31.00 Aligned_cols=121 Identities=14% Similarity=0.047 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCC
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGP 132 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~ 132 (209)
+.+|+.++.|.+. ......+-|.++-.+..++ -+.. ...++..-.-..--+++.+.|.+.||.+.++-..
T Consensus 58 ~~le~~la~Le~g-----~~a~~~~SGmaAi~~~l~~-ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~--- 128 (386)
T PF01053_consen 58 RALEQRLAALEGG-----EDALLFSSGMAAISAALLA-LLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPT--- 128 (386)
T ss_dssp HHHHHHHHHHHT------SEEEEESSHHHHHHHHHHH-HS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTT---
T ss_pred HHHHHHHHHhhcc-----cceeeccchHHHHHHHHHh-hcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCch---
Confidence 4566667776642 3456677787777666666 3432 2222222222223355666777788876544110
Q ss_pred CeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcC-CeEEEecCccc
Q 028423 133 TGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSL-SSFSFYSIIIT 203 (209)
Q Consensus 133 T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g-~~vsfd~~~~~ 203 (209)
+.+++....=++.++||+.... ++...++||++| +++..|+-..|
T Consensus 129 --------------------------d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 129 --------------------------DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp --------------------------SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred --------------------------hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 1111111111245666665432 345678899999 99999998777
Q ss_pred ccccCC
Q 028423 204 FFSFSP 209 (209)
Q Consensus 204 ~~~~~~ 209 (209)
.+.+.|
T Consensus 183 p~~~~p 188 (386)
T PF01053_consen 183 PYNQNP 188 (386)
T ss_dssp TTTC-G
T ss_pred eeeecc
Confidence 766654
No 61
>PRK05939 hypothetical protein; Provisional
Probab=76.81 E-value=47 Score=29.81 Aligned_cols=112 Identities=11% Similarity=0.057 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhH--HHHHHHHHhCCCccceeEecC
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG--QLFVSNMQFSGVDVSRLRMKR 130 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G--~~i~~~L~~~GVd~~~v~~~~ 130 (209)
+.+|+.++++.+. +.-.....|.++..+...+ -++- ...++. +..++ ..+.+.+++.|+.+.++...
T Consensus 50 ~~lE~~la~leg~-----~~~v~~ssG~~Ai~~~l~a-ll~~Gd~Vv~~---~~~y~~t~~~~~~l~~~G~~v~~v~~~- 119 (397)
T PRK05939 50 AALEAKITKMEGG-----VGTVCFATGMAAIAAVFLT-LLRAGDHLVSS---QFLFGNTNSLFGTLRGLGVEVTMVDAT- 119 (397)
T ss_pred HHHHHHHHHHhCC-----CeEEEeCCHHHHHHHHHHH-HcCCCCEEEEC---CCccccHHHHHHHHHhcCCEEEEECCC-
Confidence 4566767766542 2344555566666666555 3432 223332 22333 23445677778776544210
Q ss_pred CCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCcc
Q 028423 131 GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIII 202 (209)
Q Consensus 131 ~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~ 202 (209)
+.+++....-.+.++|+++... ++...++||++|+.+..|+.--
T Consensus 120 ----------------------------d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a 171 (397)
T PRK05939 120 ----------------------------DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMT 171 (397)
T ss_pred ----------------------------CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcc
Confidence 1122211111245666664321 2456678899999999998543
Q ss_pred c
Q 028423 203 T 203 (209)
Q Consensus 203 ~ 203 (209)
+
T Consensus 172 ~ 172 (397)
T PRK05939 172 S 172 (397)
T ss_pred c
Confidence 3
No 62
>PRK07582 cystathionine gamma-lyase; Validated
Probab=76.72 E-value=47 Score=29.28 Aligned_cols=68 Identities=19% Similarity=0.068 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHHHHHHHHHhCCCccceeEe
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~ 128 (209)
..+++.++.+.. .......+|..++.++..+ -++- ...++..-+-......+...+++.|+.+..+..
T Consensus 54 ~~Le~~lA~l~~------~~~v~~~sG~~Ai~~~l~a-ll~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 54 RALEAALGELEG------AEALVFPSGMAAITAVLRA-LLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred HHHHHHHHHHcC------CCEEEECCHHHHHHHHHHH-hcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence 455565665542 3566777888777766666 4543 334443333333334455567888988776654
No 63
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=76.00 E-value=39 Score=30.26 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCeEEEecCccccc
Q 028423 182 KLLFNLARDSLSSFSFYSIIITFF 205 (209)
Q Consensus 182 ~~~~~~ar~~g~~vsfd~~~~~~~ 205 (209)
+...++||++|+.+..|+.-.+++
T Consensus 169 ~~I~~la~~~gi~livD~t~a~~~ 192 (398)
T PRK08249 169 ERLAAAAKKVGALVVVDNTFATPI 192 (398)
T ss_pred HHHHHHHHHcCCEEEEECCcCccc
Confidence 456788899999999999655443
No 64
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=75.79 E-value=58 Score=29.00 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHH--HHHHHHHhCCCccceeEec
Q 028423 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQ--LFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 53 ~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~--~i~~~L~~~GVd~~~v~~~ 129 (209)
.+++|+.++.+.+ .+......+|.+++.+...+ .++- ...++. +..++. .+.+.++..|+.+..+..
T Consensus 55 ~~~lE~~lA~l~g-----~~~~l~~~sG~~Ai~~~l~~-ll~~GD~Vlv~---~~~y~~~~~~~~~~~~~g~~v~~~~~- 124 (385)
T PRK08574 55 LRPLEEALAKLEG-----GVDALAFNSGMAAISTLFFS-LLKAGDRVVLP---MEAYGTTLRLLKSLEKFGVKVVLAYP- 124 (385)
T ss_pred HHHHHHHHHHHhC-----CCcEEEeCCHHHHHHHHHHH-HhCCCCEEEEc---CCCchhHHHHHHHhhccCcEEEEECC-
Confidence 3566777776653 23566678888888877766 4542 233333 233442 223334555655432210
Q ss_pred CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcC-CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecC
Q 028423 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVK-GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 130 ~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~-~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~ 200 (209)
+++++....-+ +.++|+++... ++...++||++|+.+..|..
T Consensus 125 -----------------------------d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t 175 (385)
T PRK08574 125 -----------------------------STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNT 175 (385)
T ss_pred -----------------------------CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECC
Confidence 01111111111 34566654322 34567888999999999986
Q ss_pred ccc
Q 028423 201 IIT 203 (209)
Q Consensus 201 ~~~ 203 (209)
-.+
T Consensus 176 ~a~ 178 (385)
T PRK08574 176 FAT 178 (385)
T ss_pred CCc
Confidence 433
No 65
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=74.55 E-value=54 Score=29.23 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCeEEEecCccc
Q 028423 182 KLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 182 ~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
+...++||++|+.+..|..-.+
T Consensus 164 ~~I~~la~~~gi~livD~a~a~ 185 (391)
T TIGR01328 164 ERVCRDAHSQGVKVIVDNTFAT 185 (391)
T ss_pred HHHHHHHHHcCCEEEEECCCch
Confidence 4566788888999999986544
No 66
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=74.52 E-value=29 Score=32.07 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=50.8
Q ss_pred CCCeEEEecCceeEEEEeecCHHHHhh----------------CCCC------------------CCCeeeecHHHHHHH
Q 028423 14 QAALILGLQPAALIDHVARVDWSLLDQ----------------IPGE------------------RGGSIPVAIEELEHI 59 (209)
Q Consensus 14 ~~~~Il~iG~~~~vD~i~~v~~~~l~~----------------~p~~------------------~g~~~~~~~~~~~~i 59 (209)
++..|++.- |+|+|-+.+...+.+++ +|.+ .+.++.+..++..+.
T Consensus 11 ~~~~~~~aY-N~NiDai~~l~~~~l~~li~~~~~~~v~~~~e~~p~~I~s~~Dl~~~l~~~mk~G~aaE~~v~n~~l~~~ 89 (463)
T PRK03979 11 SNVSIFTAY-NSNVDAIKYLNDEDIQKLIEEFNEEEIIERIEEYPREINEPLDFVARLIHAMKTGKPAEVPLKNEELHEW 89 (463)
T ss_pred ccCceEEEe-ecchhheeecCHHHHHHHHHHhChHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCceEeeecCHHHHHH
Confidence 356688888 99999999875443321 3431 222333433333333
Q ss_pred HHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCe--EEEEEec
Q 028423 60 LSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC--GLIGAYG 104 (209)
Q Consensus 60 ~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~--~lig~VG 104 (209)
++. + ........||.|.-+|..+| ++|++. .+.+.++
T Consensus 90 ~~~---~----~~~~~~rmGGqAgimAn~la-~lg~~~vV~~~p~ls 128 (463)
T PRK03979 90 FDE---H----LKYDEERMGGQAGIISNLLA-ILDLKKVIAYTPWLS 128 (463)
T ss_pred HHH---h----cccceEEeCChHHHHHHHHH-hcCCceEEEeCCCCC
Confidence 331 1 12456789999999999999 899984 4444455
No 67
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=74.05 E-value=56 Score=28.69 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCC
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGP 132 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~ 132 (209)
+++|+.++.+.+ ........+|.++|.+...+ -++. ...++....-...-+.+...++..|+.+.++...+
T Consensus 43 ~~le~~la~l~g-----~~~a~~~~sG~~Ai~~~l~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d-- 114 (369)
T cd00614 43 DALEKKLAALEG-----GEAALAFSSGMAAISTVLLA-LLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDD-- 114 (369)
T ss_pred HHHHHHHHHHHC-----CCCEEEEcCHHHHHHHHHHH-HcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCC--
Confidence 455666665543 13566778888888887776 3432 23333332211222333444555666544332110
Q ss_pred CeeEEEEEcCCCCeeEeeccccccCCCccccchhhc-CCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCccc
Q 028423 133 TGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV-KGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 133 T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i-~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
++++. +.+ ++.++|+++... ++...++||++|+.+..|..--+
T Consensus 115 ---------------------------~~~l~-~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~ 166 (369)
T cd00614 115 ---------------------------PEALE-AAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFAT 166 (369)
T ss_pred ---------------------------HHHHH-HhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 11111 111 134555554321 34566788999999999985433
No 68
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=73.54 E-value=61 Score=29.57 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCeEEEecCccc
Q 028423 182 KLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 182 ~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
+...++||++|+.+..|+...+
T Consensus 175 ~~I~~la~~~gi~livD~t~a~ 196 (437)
T PRK05613 175 PAVAEVAHRNQVPLIVDNTIAT 196 (437)
T ss_pred HHHHHHHHHcCCeEEEECCCcc
Confidence 5567888999999999996443
No 69
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=72.42 E-value=73 Score=28.59 Aligned_cols=115 Identities=9% Similarity=-0.080 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCC
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGP 132 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~ 132 (209)
+.+|+.++.+.+ .+.......|.+++.++..+ -+.- ...++...--.+.-..+.+.++..|+.+.++...
T Consensus 73 ~~le~~lA~l~g-----~~~al~~~sG~~Ai~~~l~a-ll~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~--- 143 (403)
T PRK07810 73 SMFEERLRLIEG-----AEACFATASGMSAVFTALGA-LLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE--- 143 (403)
T ss_pred HHHHHHHHHHhC-----CCcEEEECChHHHHHHHHHH-HhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC---
Confidence 456666666654 24567778888887776555 3432 2333332111122233455667777776554210
Q ss_pred CeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCccc
Q 028423 133 TGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 133 T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
+++++....-.+.++|+++... ++...++||++|+.+..|+.--+
T Consensus 144 --------------------------d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~ 196 (403)
T PRK07810 144 --------------------------DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFAT 196 (403)
T ss_pred --------------------------CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 1111111111234566653321 34566788889999999986443
No 70
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=72.41 E-value=61 Score=28.96 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=24.0
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCcccc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIITF 204 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~~ 204 (209)
+.++|+++... ++...++|+++|+.+..|..-.++
T Consensus 150 ~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~ 192 (398)
T PRK07504 150 NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATP 192 (398)
T ss_pred CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 45677765422 355677889999999999865443
No 71
>PRK07050 cystathionine beta-lyase; Provisional
Probab=70.68 E-value=71 Score=28.54 Aligned_cols=67 Identities=12% Similarity=-0.072 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHHHHHHHHHhCCCcccee
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL 126 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v 126 (209)
+++++.++.+.+ .+......||.+++.++..+ -++- ...++..-.-...-+.+...++..|+++.++
T Consensus 68 ~~Le~~lA~l~g-----~~~~l~~~sgt~Ai~~~l~a-l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~v 135 (394)
T PRK07050 68 LALAQRLAEIEG-----GRHALLQPSGLAAISLVYFG-LVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFY 135 (394)
T ss_pred HHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHH-HhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEE
Confidence 556666666543 23566778999998888777 4432 2333333222222233345567778876644
No 72
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=70.07 E-value=83 Score=28.57 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhH---HHHHHHHHhCCCccceeEec
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G---~~i~~~L~~~GVd~~~v~~~ 129 (209)
+.+++.++.+.+ .+......+|.++..+..++ -+.. ...++.. ..++ ..+.+.++..|+.+.++...
T Consensus 67 ~~Le~~lA~leg-----~~~al~~~sG~~Ai~~al~~-ll~~GD~Vlv~~---~~y~~t~~~~~~~~~~~Gv~v~~vd~~ 137 (431)
T PRK08248 67 DVFEKRIAALEG-----GIGALAVSSGQAAITYSILN-IASAGDEIVSSS---SLYGGTYNLFAHTLPKLGITVKFVDPS 137 (431)
T ss_pred HHHHHHHHHHhC-----CCcEEEECCHHHHHHHHHHH-HhCCCCEEEEcc---CchhhHHHHHHHHHHhCCEEEEEECCC
Confidence 456666665553 23566677777766655555 2332 2333332 2232 34455677777776554210
Q ss_pred CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCc
Q 028423 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 130 ~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~ 201 (209)
+++++....-.+.++|++.... .+...++||++|+.+..|+.-
T Consensus 138 -----------------------------d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 138 -----------------------------DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred -----------------------------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence 1111111111235666664321 245667889999999999854
No 73
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=69.67 E-value=82 Score=28.64 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCeEEEecCc
Q 028423 182 KLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 182 ~~~~~~ar~~g~~vsfd~~~ 201 (209)
+...++||++|+++..|+.-
T Consensus 169 ~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 169 PTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred HHHHHHHHHcCCEEEEECCC
Confidence 45678889999999999854
No 74
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=69.41 E-value=83 Score=28.32 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhH---HHHHHHHHhCCCccceeEec
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G---~~i~~~L~~~GVd~~~v~~~ 129 (209)
+++++.++++.+ .+......+|.+++.+...+ -+.- ...++. +..++ ..+...++..|+.+..+...
T Consensus 60 ~~le~~lA~l~g-----~~~~v~~~sG~~Ai~~al~~-l~~~Gd~Vl~~---~~~y~~t~~~~~~~~~~~G~~v~~v~~~ 130 (418)
T TIGR01326 60 DVLEQRIAALEG-----GVAALAVASGQAAITYAILN-LAQAGDNIVSS---SYLYGGTYNLFKHTLKRLGIEVRFVDPD 130 (418)
T ss_pred HHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHH-HhCCCCEEEEE---CCCcHHHHHHHHHHHHHcCcEEEEECCC
Confidence 455555665543 23556677887777766655 3332 222332 22332 34455666677765443210
Q ss_pred CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCc
Q 028423 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 130 ~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~ 201 (209)
+++++....-++.++|+++... ++...++||++|+.+..|...
T Consensus 131 -----------------------------d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~ 181 (418)
T TIGR01326 131 -----------------------------DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTF 181 (418)
T ss_pred -----------------------------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 0111111111234555554321 345667888899999999854
Q ss_pred cc
Q 028423 202 IT 203 (209)
Q Consensus 202 ~~ 203 (209)
-+
T Consensus 182 ~~ 183 (418)
T TIGR01326 182 AT 183 (418)
T ss_pred ch
Confidence 33
No 75
>PLN02242 methionine gamma-lyase
Probab=67.78 E-value=62 Score=29.25 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=24.2
Q ss_pred ccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCcccccccC
Q 028423 171 SKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIITFFSFS 208 (209)
Q Consensus 171 ~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~~~~~~ 208 (209)
.++|++.... ++...++||++|+.+..|..- +.+.++
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~-~~~~~~ 208 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTF-APMVLS 208 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCC-CccCCC
Confidence 4566665432 355667889999999999865 344443
No 76
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=64.71 E-value=1.1e+02 Score=27.72 Aligned_cols=65 Identities=25% Similarity=0.230 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcC--CCeEEEEEecCChhH---HHHHHHHHhCCCccceeE
Q 028423 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG--VPCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLR 127 (209)
Q Consensus 53 ~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG--~~~~lig~VG~D~~G---~~i~~~L~~~GVd~~~v~ 127 (209)
.+.+|+.++.|++ .......+-|.++-.+..++ -+. -++... +|-|| +++...|++.||++.++-
T Consensus 65 ~~~lE~~~a~LEg-----~~~~~afsSGmaAI~~~~l~-ll~~GD~vl~~----~~~YG~t~~~~~~~l~~~gi~~~~~d 134 (396)
T COG0626 65 RDALEEALAELEG-----GEDAFAFSSGMAAISTALLA-LLKAGDHVLLP----DDLYGGTYRLFEKILQKFGVEVTFVD 134 (396)
T ss_pred HHHHHHHHHHhhC-----CCcEEEecCcHHHHHHHHHH-hcCCCCEEEec----CCccchHHHHHHHHHHhcCeEEEEEC
Confidence 3567777777764 24577788888888877777 454 333322 23344 566667788888887653
No 77
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=63.57 E-value=1e+02 Score=28.39 Aligned_cols=40 Identities=10% Similarity=-0.040 Sum_probs=27.7
Q ss_pred ceEecCchHHHHHHHHHHhcCCCe--EEEEEecCChhHHHHHHHHHhC
Q 028423 74 IKTIAGGSVTNTIRGLSVGFGVPC--GLIGAYGDDQQGQLFVSNMQFS 119 (209)
Q Consensus 74 ~~~~~GG~a~N~A~~la~rLG~~~--~lig~VG~D~~G~~i~~~L~~~ 119 (209)
.....||.|.-+|..+| ++|+++ .+.+.++ +..++.|.+.
T Consensus 84 d~~rmGGqAgimAn~la-~lg~~~vI~~~~~ls-----~~qa~lf~~~ 125 (446)
T TIGR02045 84 DYERMGGQAGIISNLLG-RLGLKKVIAYTPFLS-----KRQAEMFVAT 125 (446)
T ss_pred ceeeeCCHHHHHHHHHH-hcCCceEEEeCCCCC-----HHHHHHhCCc
Confidence 34689999999999999 899985 3444444 3344555443
No 78
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=62.91 E-value=1.1e+02 Score=27.27 Aligned_cols=116 Identities=17% Similarity=0.076 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeEEEEEecCChhHHHH---HHHHHhCCCccceeEec
Q 028423 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLF---VSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 53 ~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i---~~~L~~~GVd~~~v~~~ 129 (209)
.+.+++.++.+.+ ........||.+++.++..+ -++---.++. .++.++..+ ...++..|+.+.++
T Consensus 55 ~~~Le~~lA~leg-----~e~ivvt~gg~~Ai~~~l~a-ll~~Gd~Il~--~~~~y~~~~~~~~~~~~~~gi~v~~v--- 123 (388)
T PRK08861 55 RGLLEQTLSELES-----GKGAVVTNCGTSALNLWVSA-LLGPDDLIVA--PHDCYGGTYRLFNTRANKGDFKVQFV--- 123 (388)
T ss_pred HHHHHHHHHHHhC-----CCeEEEECCHHHHHHHHHHH-HcCCCCEEEE--cCCchHHHHHHHHHHHhcCCeEEEEE---
Confidence 4566777777664 35677888888888877776 3443222222 234455322 23333445544332
Q ss_pred CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCc
Q 028423 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL--------KKLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 130 ~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~ 201 (209)
+. .+.+++....-++.++|+++... ++...++||++|+.+..|..-
T Consensus 124 -----------d~---------------~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~ 177 (388)
T PRK08861 124 -----------DQ---------------SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTF 177 (388)
T ss_pred -----------CC---------------CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCc
Confidence 10 01122211111245677764321 245667888999999999976
Q ss_pred cccc
Q 028423 202 ITFF 205 (209)
Q Consensus 202 ~~~~ 205 (209)
.+.+
T Consensus 178 ~~~~ 181 (388)
T PRK08861 178 LTPV 181 (388)
T ss_pred cccc
Confidence 5543
No 79
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=62.69 E-value=1.2e+02 Score=27.43 Aligned_cols=34 Identities=6% Similarity=0.040 Sum_probs=23.6
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCccc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
+.++|++.... ++...++||++|+.+..|..--+
T Consensus 148 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~ 189 (427)
T PRK05994 148 RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLAS 189 (427)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccc
Confidence 45667774321 35567888999999999996543
No 80
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=62.66 E-value=1.1e+02 Score=26.91 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCeEEEecCc
Q 028423 182 KLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 182 ~~~~~~ar~~g~~vsfd~~~ 201 (209)
+...++||++|+.+..|..-
T Consensus 156 ~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 156 AAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred HHHHHHHHHcCCEEEEECCC
Confidence 34567778888888888753
No 81
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=59.30 E-value=1.3e+02 Score=26.73 Aligned_cols=63 Identities=16% Similarity=0.061 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCC-eEEEEEecCChhHH---HHHHHHHhCCCccce
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP-CGLIGAYGDDQQGQ---LFVSNMQFSGVDVSR 125 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~-~~lig~VG~D~~G~---~i~~~L~~~GVd~~~ 125 (209)
+.+|+.++.+.+ .+......+|.+++.+...+ -++-- ..++. +..++. ++...++..|+++.+
T Consensus 53 ~~lE~~lA~l~g-----~~~~~~~~sG~~Ai~~al~a-ll~~GD~Vl~~---~~~y~~t~~~~~~~~~~~gi~v~~ 119 (377)
T TIGR01324 53 FALQDAMCELEG-----GAGCYLYPSGLAAVTNSILA-FVKAGDHVLMV---DSAYEPTRYFCDIVLKRMGVDITY 119 (377)
T ss_pred HHHHHHHHHHhC-----CCcEEEECcHHHHHHHHHHH-hcCCCCEEEEc---CCCcHHHHHHHHHHHHhcCcEEEE
Confidence 466777776654 24667788999998888777 45432 23333 334432 223456667776543
No 82
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=58.78 E-value=1.3e+02 Score=26.61 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=22.2
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~ 201 (209)
+.++|+++... ++...++||++|+.+..|+.-
T Consensus 131 ~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 131 KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 45666655322 355678889999999999953
No 83
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=56.22 E-value=25 Score=25.68 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=47.2
Q ss_pred EEEec-CChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcC-CCCeeEee--ccccccCCCccccchhhcCCccEEE
Q 028423 100 IGAYG-DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRP--CLSNAVKIQADELIAEDVKGSKVLH 175 (209)
Q Consensus 100 ig~VG-~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~-~GeR~~~~--~~g~~~~l~~~~i~~~~i~~~d~v~ 175 (209)
++.+| ....|..+.+.|.+ .-+.+.+..... .. .|.+--.. .+.....+..++.+.+.++++|+++
T Consensus 2 V~IvGAtG~vG~~l~~lL~~-hp~~e~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAE-HPDFELVALVSS---------SRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHH-TSTEEEEEEEES---------TTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEE
T ss_pred EEEECCCCHHHHHHHHHHhc-CCCccEEEeeee---------ccccCCeeehhccccccccceeEeecchhHhhcCCEEE
Confidence 45677 67899999999988 333332222110 11 22221111 1111123333344556679999999
Q ss_pred EeCCcc--HHHHHHHHhcCCeEEEecC
Q 028423 176 LALYLK--KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 176 i~g~~~--~~~~~~ar~~g~~vsfd~~ 200 (209)
+....- ......+.+.|+ ..+|..
T Consensus 72 ~a~~~~~~~~~~~~~~~~g~-~ViD~s 97 (121)
T PF01118_consen 72 LALPHGASKELAPKLLKAGI-KVIDLS 97 (121)
T ss_dssp E-SCHHHHHHHHHHHHHTTS-EEEESS
T ss_pred ecCchhHHHHHHHHHhhCCc-EEEeCC
Confidence 975432 234455577887 566764
No 84
>PRK06234 methionine gamma-lyase; Provisional
Probab=55.63 E-value=1.5e+02 Score=26.41 Aligned_cols=67 Identities=15% Similarity=0.029 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHHHHHHHHHhCCCcccee
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL 126 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v 126 (209)
.++++.++++.+ .+......+|.+++.+...+ .+.- ...++..-.-...-..+...++..|+.+.++
T Consensus 67 ~~Le~~iA~~~g-----~~~~l~~~sG~~Ai~~al~~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v 134 (400)
T PRK06234 67 TEVENKLALLEG-----GEAAVVAASGMGAISSSLWS-ALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFV 134 (400)
T ss_pred HHHHHHHHHHhC-----CCcEEEEcCHHHHHHHHHHH-HhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEE
Confidence 455666665543 13456677888777766555 3432 2223222111111223345566677765544
No 85
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=55.52 E-value=12 Score=34.23 Aligned_cols=58 Identities=10% Similarity=-0.060 Sum_probs=31.5
Q ss_pred Ceeee-cHHHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCCCeE-EEEEecCChhHHHHHHHH
Q 028423 47 GSIPV-AIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG-LIGAYGDDQQGQLFVSNM 116 (209)
Q Consensus 47 ~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~~~~-lig~VG~D~~G~~i~~~L 116 (209)
.++.+ +.+.+.++++.-. +......||.|+-.|..|| .++.... +.+.++. +.+++.|
T Consensus 69 aE~~~~~~~~f~~~~~~~~-------~~~~~r~GGnA~imAn~la-~l~~~~Vil~~p~~s----k~~~~l~ 128 (444)
T PF04587_consen 69 AERFVSNSELFRELVDAAF-------KYDEERMGGNAGIMANRLA-NLEGCPVILYAPILS----KEQAELF 128 (444)
T ss_dssp EEEEB--THHHHHHHHHHH---------SEEEEESHHHHHHHHHC-CTT-SEEEEE-SS------HHHHTTS
T ss_pred eEEEeechHHHHHHHHHhh-------cccccccCchHHHHHHHHH-hCCCCEEEEecCcCC----HHHHHhc
Confidence 34455 4455656554211 1334569999999999999 6876555 4443653 3344555
No 86
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=52.07 E-value=33 Score=22.90 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEec------CChhHHHHHHHHHhCCCccce
Q 028423 81 SVTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVSR 125 (209)
Q Consensus 81 ~a~N~A~~la~rLG~~~~lig~VG------~D~~G~~i~~~L~~~GVd~~~ 125 (209)
.+.=.|..++ ++|.++.++..-. +....+.+++.|++.||+...
T Consensus 10 ig~E~A~~l~-~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 10 IGIELAEALA-ELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHHH-HTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHH-HhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 3455788888 7999999987633 234678899999999988754
No 87
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=49.57 E-value=1.9e+02 Score=25.69 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=21.6
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCcc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIII 202 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~ 202 (209)
+.++|+++... ++...++||++|+.+..|..--
T Consensus 146 ~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 146 RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 45666654321 2456678888999999998543
No 88
>PRK06767 methionine gamma-lyase; Provisional
Probab=48.20 E-value=2e+02 Score=25.50 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCeEEEecCc
Q 028423 182 KLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 182 ~~~~~~ar~~g~~vsfd~~~ 201 (209)
+...++||++|+.+..|..-
T Consensus 166 ~~I~~la~~~g~~vivD~a~ 185 (386)
T PRK06767 166 KQVIRVAKRNGLLVIVDNTF 185 (386)
T ss_pred HHHHHHHHHcCCEEEEECCC
Confidence 45667788888888888853
No 89
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=45.12 E-value=2.4e+02 Score=25.55 Aligned_cols=36 Identities=11% Similarity=-0.052 Sum_probs=24.9
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCccccc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIITFF 205 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~~~ 205 (209)
+.++|++.... ++...++||++|+.+..|..--+.+
T Consensus 143 ~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~ 186 (425)
T PRK06084 143 RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPV 186 (425)
T ss_pred CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 46677775321 2556788899999999999654443
No 90
>PLN02509 cystathionine beta-lyase
Probab=43.81 E-value=2.6e+02 Score=25.73 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=23.8
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCccc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
+.++|+++... ++...++||++|+.+..|+...+
T Consensus 217 ~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~ 258 (464)
T PLN02509 217 QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS 258 (464)
T ss_pred CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccc
Confidence 45677665432 24566788999999999996443
No 91
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.30 E-value=2.7e+02 Score=25.38 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=22.9
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~ 201 (209)
+.++|+++... ++...++||++|+.+..|+..
T Consensus 155 ~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 155 NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 45667665432 356778899999999999953
No 92
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=42.27 E-value=2.8e+02 Score=25.64 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=23.7
Q ss_pred CceEecCchHHHHHHHHHHhcCCCeEEEEEecC
Q 028423 73 PIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGD 105 (209)
Q Consensus 73 ~~~~~~GG~a~N~A~~la~rLG~~~~lig~VG~ 105 (209)
..+...||.|+-.|..+|...|.++ ++.++.
T Consensus 104 ~~~~rmGGnAgimAn~la~~~g~~V--ia~~~~ 134 (453)
T PRK14038 104 WDELRMGGQVGIMANLLGGVYGVPV--IAHVPQ 134 (453)
T ss_pred cceEEeCChHHHHHHHHHhhcCCce--EEECCC
Confidence 4579999999999999972256676 667774
No 93
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.47 E-value=1e+02 Score=27.68 Aligned_cols=46 Identities=20% Similarity=0.114 Sum_probs=29.1
Q ss_pred eEecCchHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCc
Q 028423 75 KTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD 122 (209)
Q Consensus 75 ~~~~GG~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd 122 (209)
....|+.+.-.|..|+ +.|.++.++..-..+.. +...++|.+.|+.
T Consensus 10 iiG~g~~G~~~A~~l~-~~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 10 VVGAGVSGLALAKFLK-KLGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred EECCCHHHHHHHHHHH-HCCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 3445666777888888 79999887755322333 3334556666765
No 94
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=41.36 E-value=57 Score=22.53 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccc
Q 028423 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 79 GG~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~ 124 (209)
+|.....+..+. ..|+++.+.+.+|.. .++.|++.||.+-
T Consensus 47 ~~~~~~~~~~l~-~~~v~~vi~~~iG~~-----a~~~l~~~gI~v~ 86 (102)
T cd00562 47 GGEGKLAARLLA-LEGCDAVLVGGIGGP-----AAAKLEAAGIKPI 86 (102)
T ss_pred CccchHHHHHHH-HCCCcEEEEcccCcc-----HHHHHHHcCCEEE
Confidence 455678888898 699999999988755 6777888998863
No 95
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=40.86 E-value=1.8e+02 Score=25.79 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=50.7
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccc--cchhhcCCcc
Q 028423 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE--LIAEDVKGSK 172 (209)
Q Consensus 95 ~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~--i~~~~i~~~d 172 (209)
.+++++|..| ..|+.+++.|++...+...+..-.. ...-|++..-+. + ..+...+ .+...+++.|
T Consensus 2 ~~VavvGATG--~VG~~~~~~L~e~~f~~~~~~~~AS--------~rSaG~~~~~f~-~--~~~~v~~~~~~~~~~~~~D 68 (334)
T COG0136 2 LNVAVLGATG--AVGQVLLELLEERHFPFEELVLLAS--------ARSAGKKYIEFG-G--KSIGVPEDAADEFVFSDVD 68 (334)
T ss_pred cEEEEEeccc--hHHHHHHHHHHhcCCCcceEEEEec--------ccccCCcccccc-C--ccccCccccccccccccCC
Confidence 4567777777 7899999999998666553322110 011233311110 0 0011111 2334456899
Q ss_pred EEEEeCC--ccHHHHHHHHhcCCeEEEecC
Q 028423 173 VLHLALY--LKKLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 173 ~v~i~g~--~~~~~~~~ar~~g~~vsfd~~ 200 (209)
+++.+.- .-......+.++| .+.+|+.
T Consensus 69 ivf~~ag~~~s~~~~p~~~~~G-~~VIdns 97 (334)
T COG0136 69 IVFFAAGGSVSKEVEPKAAEAG-CVVIDNS 97 (334)
T ss_pred EEEEeCchHHHHHHHHHHHHcC-CEEEeCC
Confidence 9988752 2244556778899 5566663
No 96
>PRK07049 methionine gamma-lyase; Validated
Probab=40.19 E-value=2.8e+02 Score=25.03 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcCC-CeEEEEEecCChhHHHHHHHHHhCCCcc
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDV 123 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG~-~~~lig~VG~D~~G~~i~~~L~~~GVd~ 123 (209)
+.+++.++.+.+ ........||..++.++..+ -+.- ...++..-.-..+-..+.+.++..|+..
T Consensus 86 ~~Le~~lA~leg-----~~~~iv~~sG~~Ai~~~l~a-l~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~ 150 (427)
T PRK07049 86 EIVEDRLAVYEG-----AESAALFSSGMSAIATTLLA-FVRPGDVILHSQPLYGGTETLLAKTFRNFGVGA 150 (427)
T ss_pred HHHHHHHHHHhC-----CCcEEEEccHHHHHHHHHHH-HhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEE
Confidence 456666776653 24566788888887776666 4532 3333333232333344455567777763
No 97
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=39.56 E-value=45 Score=28.90 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHH
Q 028423 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNM 116 (209)
Q Consensus 82 a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L 116 (209)
.-+..-.|. +.|++..|+..+|-|..|+.+.+.+
T Consensus 20 ~~~~~~~~~-~~~~~a~f~~~~gpd~~g~~~~r~~ 53 (296)
T PRK15394 20 VPRLLEILS-KHGIQASFFFSVGPDNMGRHLWRLL 53 (296)
T ss_pred HHHHHHHHH-HcCCCEEEEeccCCCchhHHHHHHh
Confidence 347788889 7999999999999999998776655
No 98
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=38.66 E-value=2.5e+02 Score=23.92 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=28.6
Q ss_pred ceEecCchHHHHHHHHHHhcCCC-eEEEEEecCChhHHHHHHHHHhC
Q 028423 74 IKTIAGGSVTNTIRGLSVGFGVP-CGLIGAYGDDQQGQLFVSNMQFS 119 (209)
Q Consensus 74 ~~~~~GG~a~N~A~~la~rLG~~-~~lig~VG~D~~G~~i~~~L~~~ 119 (209)
.....||.+.-++.+|+ ++|++ +.++.+ +..-.+.+.+.+.+.
T Consensus 131 lIlGaGGaaraia~aL~-~~G~~~I~I~nR--~~~ka~~la~~l~~~ 174 (284)
T PRK12549 131 VQLGAGGAGAAVAHALL-TLGVERLTIFDV--DPARAAALADELNAR 174 (284)
T ss_pred EEECCcHHHHHHHHHHH-HcCCCEEEEECC--CHHHHHHHHHHHHhh
Confidence 45668999999999999 79985 444443 224456666666543
No 99
>PRK07503 methionine gamma-lyase; Provisional
Probab=35.67 E-value=3.2e+02 Score=24.37 Aligned_cols=34 Identities=6% Similarity=-0.011 Sum_probs=23.0
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCccc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
+.++|+++... ++...++||++|+.+..|..-.+
T Consensus 150 ~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~ 191 (403)
T PRK07503 150 KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCT 191 (403)
T ss_pred cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence 45667764221 35567888999999999985443
No 100
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=33.67 E-value=3.4e+02 Score=24.05 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhccCCCCCCceEecCchHHHHHHHHHHhcC
Q 028423 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (209)
Q Consensus 54 ~~~~~i~~~l~~~~~~~~~~~~~~~GG~a~N~A~~la~rLG 94 (209)
+.+++.++++.+ ........||.++..++..+ -++
T Consensus 54 ~~le~~lA~l~g-----~~~v~~~~gg~~Ai~~~l~a-ll~ 88 (382)
T TIGR02080 54 DLLQQALAELEG-----GAGAVVTNTGMSAIHLVTTA-LLG 88 (382)
T ss_pred HHHHHHHHHHhC-----CCcEEEEcCHHHHHHHHHHH-HcC
Confidence 566677776653 23567777888887777766 343
No 101
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=33.40 E-value=1.4e+02 Score=27.44 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=37.3
Q ss_pred CCceEecCch-HHHHHHHHHHhcCCCeEEEEEec------CChhHHHHHHHHHhCCCccce
Q 028423 72 SPIKTIAGGS-VTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVSR 125 (209)
Q Consensus 72 ~~~~~~~GG~-a~N~A~~la~rLG~~~~lig~VG------~D~~G~~i~~~L~~~GVd~~~ 125 (209)
+++...-||. ++=.|-.++ +||.++.++-+-. |...++.+.+.|++.|+....
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~-~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~ 233 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFA-ALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILL 233 (454)
T ss_pred CEEEEECCCHHHHHHHHHHH-HcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEc
Confidence 3444444442 345688888 8999999996532 457889999999997776553
No 102
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=33.20 E-value=2.8e+02 Score=24.65 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=48.6
Q ss_pred CCCeEEEEEecCChhHHHHHHHHHh-CCCccceeEec--CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCC
Q 028423 94 GVPCGLIGAYGDDQQGQLFVSNMQF-SGVDVSRLRMK--RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (209)
Q Consensus 94 G~~~~lig~VG~D~~G~~i~~~L~~-~GVd~~~v~~~--~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~ 170 (209)
+.+++++|.-| ..|+.+++.|.+ ..++...+..- +...|..+-+ .+. .+..++++.+.+++
T Consensus 5 ~~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~------------~~~--~l~v~~~~~~~~~~ 68 (347)
T PRK06728 5 GYHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF------------KGR--EIIIQEAKINSFEG 68 (347)
T ss_pred CCEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee------------CCc--ceEEEeCCHHHhcC
Confidence 45677777776 779999999994 67775543221 1122222211 111 22333333344578
Q ss_pred ccEEEEeCCc-c-HHHHHHHHhcCCeEEEecC
Q 028423 171 SKVLHLALYL-K-KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 171 ~d~v~i~g~~-~-~~~~~~ar~~g~~vsfd~~ 200 (209)
.|+++++.-. . ......+.++|+ +.+|++
T Consensus 69 ~Divf~a~~~~~s~~~~~~~~~~G~-~VID~S 99 (347)
T PRK06728 69 VDIAFFSAGGEVSRQFVNQAVSSGA-IVIDNT 99 (347)
T ss_pred CCEEEECCChHHHHHHHHHHHHCCC-EEEECc
Confidence 8999886422 1 223344566774 455653
No 103
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=32.53 E-value=92 Score=21.40 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEe
Q 028423 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 108 ~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~ 149 (209)
.=+.+.+.|++.|+............+..+.+.||+|.+-=+
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi 108 (113)
T cd08345 67 EFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLEL 108 (113)
T ss_pred HHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEE
Confidence 356688999999998753322222346677777898887533
No 104
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=31.88 E-value=1.1e+02 Score=17.90 Aligned_cols=33 Identities=9% Similarity=0.150 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhCCCccceeEecCCCCeeEEEE
Q 028423 107 QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL 139 (209)
Q Consensus 107 ~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~ 139 (209)
..-..+.+.|.+.+++...+.........++++
T Consensus 15 ~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v 47 (60)
T cd04868 15 GVAAKIFSALAEAGINVDMISQSESEVNISFTV 47 (60)
T ss_pred CHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEE
Confidence 345678999999999998776532223444443
No 105
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=31.68 E-value=78 Score=23.09 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeecccc
Q 028423 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSN 154 (209)
Q Consensus 109 G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~ 154 (209)
=+.+.+.|++.|+....-.......+..+.+.||+|.+--+.....
T Consensus 72 ld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 72 FDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred HHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCcH
Confidence 3668888999999864221112234567777899999876665543
No 106
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=31.50 E-value=38 Score=23.98 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=33.5
Q ss_pred ecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEee
Q 028423 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (209)
Q Consensus 103 VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~ 150 (209)
.|.+++.++++=.|.+.||+...+.++....+..+.-++|.|.--++.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~ 66 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL 66 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEE
Confidence 788999999999999999999877665332223344455666644443
No 107
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=30.75 E-value=1.4e+02 Score=20.90 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=30.6
Q ss_pred ecCChhHHHHHHHHHhCCCccceeEecCC-CCeeEEEEEcCCCCeeEee
Q 028423 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRP 150 (209)
Q Consensus 103 VG~D~~G~~i~~~L~~~GVd~~~v~~~~~-~T~~~~v~i~~~GeR~~~~ 150 (209)
+.+...=+.+.+.|++.|+.......... ..+..+.+.||+|.+.-+.
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~ 116 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFY 116 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEE
Confidence 44434445688899999998754311111 2345677889999986554
No 108
>PRK07671 cystathionine beta-lyase; Provisional
Probab=30.39 E-value=3.8e+02 Score=23.64 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCeEEEecCc
Q 028423 182 KLLFNLARDSLSSFSFYSII 201 (209)
Q Consensus 182 ~~~~~~ar~~g~~vsfd~~~ 201 (209)
+...++||++|+.+..|..-
T Consensus 154 ~~I~~la~~~g~~lvvD~a~ 173 (377)
T PRK07671 154 KKISTIAKEKGLLTIVDNTF 173 (377)
T ss_pred HHHHHHHHHcCCEEEEECCC
Confidence 45667788888888888853
No 109
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=30.29 E-value=1.5e+02 Score=19.04 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=29.0
Q ss_pred eEEEEEecCCh----hHHHHHHHHHhCCCccceeEecCCCCeeEEEE
Q 028423 97 CGLIGAYGDDQ----QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL 139 (209)
Q Consensus 97 ~~lig~VG~D~----~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~ 139 (209)
.+.++.||++- ....+.+.|.+.||+..-+.........++++
T Consensus 2 ~a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V 48 (66)
T cd04915 2 VAIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVV 48 (66)
T ss_pred EEEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEE
Confidence 56778888643 45678888999999987665543344555544
No 110
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=30.25 E-value=50 Score=22.46 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=34.2
Q ss_pred EecCchHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccc
Q 028423 76 TIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 76 ~~~GG~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~ 124 (209)
...+|.+...+..|. ..|+.+.+.+.+| +...+.|++.||.+-
T Consensus 36 ~~~~~~~~~~~~~l~-~~~v~~li~~~iG-----~~~~~~L~~~gI~v~ 78 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLA-EEGVDVLICGGIG-----EGAFRALKEAGIKVY 78 (94)
T ss_dssp CCSSCHSTHHHHHHH-HTTESEEEESCSC-----HHHHHHHHHTTSEEE
T ss_pred ccccccchhHHHHHH-HcCCCEEEEeCCC-----HHHHHHHHHCCCEEE
Confidence 345677788888888 6999999999875 457888999998864
No 111
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=30.09 E-value=94 Score=21.47 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccc
Q 028423 80 GSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 80 G~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~ 124 (209)
|.....+..|+ ..|+++.+.+.+|. ..++.|++.||..-
T Consensus 50 ~~~~~~~~~l~-~~~v~~vi~~~iG~-----~~~~~l~~~gI~v~ 88 (103)
T cd00851 50 GAGGKAAEFLA-DEGVDVVIVGGIGP-----RALNKLRNAGIKVY 88 (103)
T ss_pred CCchHHHHHHH-HcCCCEEEeCCCCc-----CHHHHHHHCCCEEE
Confidence 44577888888 69999999988774 46788999999874
No 112
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=29.82 E-value=56 Score=25.17 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=23.3
Q ss_pred ceEecCchHHHHHHHHHHhcCCCeEEEEEe
Q 028423 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (209)
Q Consensus 74 ~~~~~GG~a~N~A~~la~rLG~~~~lig~V 103 (209)
+.--.||++.|+|..++ ..+-++..++-+
T Consensus 65 ltDl~GGSP~N~A~~l~-~~~~~~~viaGv 93 (143)
T COG2893 65 LTDLFGGSPFNVASRLA-MEGPRVEVIAGV 93 (143)
T ss_pred EEecCCCCHhHHHHHHH-hhCCCceEEecC
Confidence 55678999999999999 677776776654
No 113
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=29.70 E-value=3.6e+02 Score=23.68 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=45.9
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCccceeEec--CCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccE
Q 028423 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK--RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKV 173 (209)
Q Consensus 96 ~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~--~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~ 173 (209)
++..+|.-| ..|+.+++.|.+.+.....+... .... |++.- ..+ ..+..++.+...++++|+
T Consensus 6 ~IaIvGATG--~vG~eLlrlL~~~~hP~~~l~~v~s~~~a----------G~~l~--~~~--~~l~~~~~~~~~~~~vD~ 69 (336)
T PRK05671 6 DIAVVGATG--TVGEALVQILEERDFPVGTLHLLASSESA----------GHSVP--FAG--KNLRVREVDSFDFSQVQL 69 (336)
T ss_pred EEEEEccCC--HHHHHHHHHHhhCCCCceEEEEEECcccC----------CCeec--cCC--cceEEeeCChHHhcCCCE
Confidence 455666655 67999999999765433322211 1111 22211 112 123333333333578999
Q ss_pred EEEeCCcc--HHHHHHHHhcCCeEEEecC
Q 028423 174 LHLALYLK--KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 174 v~i~g~~~--~~~~~~ar~~g~~vsfd~~ 200 (209)
+++..-.- ......+.++|++ .+|.+
T Consensus 70 vFla~p~~~s~~~v~~~~~~G~~-VIDlS 97 (336)
T PRK05671 70 AFFAAGAAVSRSFAEKARAAGCS-VIDLS 97 (336)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCe-EEECc
Confidence 99965321 2334556778865 55653
No 114
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=29.42 E-value=1.8e+02 Score=24.70 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecC
Q 028423 81 SVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR 130 (209)
Q Consensus 81 ~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~ 130 (209)
+++-.|-.|. .+|.++..+..||||. +.|.+.|+..-=..+.+....
T Consensus 22 Na~~la~~L~-~~G~~v~~~~~VgD~~--~~I~~~l~~a~~r~D~vI~tG 68 (255)
T COG1058 22 NAAFLADELT-ELGVDLARITTVGDNP--DRIVEALREASERADVVITTG 68 (255)
T ss_pred hHHHHHHHHH-hcCceEEEEEecCCCH--HHHHHHHHHHHhCCCEEEECC
Confidence 3566778888 6999999999999985 234444433322244455544
No 115
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.07 E-value=1.1e+02 Score=21.48 Aligned_cols=34 Identities=6% Similarity=-0.044 Sum_probs=23.5
Q ss_pred hhcCCccEEEEeCCcc-----HHHHHHHHhcCCeEEEec
Q 028423 166 EDVKGSKVLHLALYLK-----KLLFNLARDSLSSFSFYS 199 (209)
Q Consensus 166 ~~i~~~d~v~i~g~~~-----~~~~~~ar~~g~~vsfd~ 199 (209)
..++++|+|.+-.... ...-+.|++.++++.|=.
T Consensus 44 ~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 44 SKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 4577889888755443 334567899999987743
No 116
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.93 E-value=1.6e+02 Score=18.76 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=25.6
Q ss_pred EEEEecC---C-hhHHHHHHHHHhCCCccceeEecCCCCeeEEEE
Q 028423 99 LIGAYGD---D-QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL 139 (209)
Q Consensus 99 lig~VG~---D-~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~ 139 (209)
+++.||+ + .....+.+.|.+.||+...+.........++++
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v 47 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIV 47 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEE
Confidence 4455554 1 235678888999999987665533344555554
No 117
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=28.42 E-value=1.7e+02 Score=20.15 Aligned_cols=42 Identities=7% Similarity=-0.128 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEee
Q 028423 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (209)
Q Consensus 109 G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~ 150 (209)
-+.+.+.|++.|+....-......-...+.+.||+|.+.-+.
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNIL 109 (112)
T ss_pred HHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEE
Confidence 356788899999886432111112235666779999886554
No 118
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=27.64 E-value=4.7e+02 Score=23.77 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=35.2
Q ss_pred CceEecCch-HHHHHHHHHHhcCCCeEEEEEe------cCChhHHHHHHHHHhCCCccc
Q 028423 73 PIKTIAGGS-VTNTIRGLSVGFGVPCGLIGAY------GDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 73 ~~~~~~GG~-a~N~A~~la~rLG~~~~lig~V------G~D~~G~~i~~~L~~~GVd~~ 124 (209)
+.....||. +.-.|..++ ++|.++.++..- .+....+.+.+.|++.||++.
T Consensus 185 ~vvVvGgG~~g~E~A~~l~-~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~ 242 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWR-RLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIH 242 (475)
T ss_pred eEEEECCCHHHHHHHHHHH-HcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEE
Confidence 444444443 345667778 799999988652 234567888999999998765
No 119
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=27.33 E-value=1.6e+02 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=35.6
Q ss_pred CceEecCc-hHHHHHHHHHHhcCCCeEEEEEe----c--CChhHHHHHHHHHhCCCccc
Q 028423 73 PIKTIAGG-SVTNTIRGLSVGFGVPCGLIGAY----G--DDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 73 ~~~~~~GG-~a~N~A~~la~rLG~~~~lig~V----G--~D~~G~~i~~~L~~~GVd~~ 124 (209)
+....-|| .+.-+|..++ ++|.++.++-.- . +....+.+++.|++.||++.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~-~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLK-NYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred eEEEECCcHHHHHHHHHHH-HcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEE
Confidence 33443344 2556778888 799999887542 1 23577889999999999865
No 120
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=27.32 E-value=4e+02 Score=23.89 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=47.1
Q ss_pred CeEEEEEecCChhHHHHHH-HHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEE
Q 028423 96 PCGLIGAYGDDQQGQLFVS-NMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVL 174 (209)
Q Consensus 96 ~~~lig~VG~D~~G~~i~~-~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v 174 (209)
+++++|..| ..|+.+++ .|++..+....+...... ..|.+. ....+.. ....+..+.+.++++|++
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~---------~sg~~~-~~f~g~~-~~v~~~~~~~~~~~~Div 69 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTS---------QAGGAA-PSFGGKE-GTLQDAFDIDALKKLDII 69 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecch---------hhCCcc-cccCCCc-ceEEecCChhHhcCCCEE
Confidence 455666665 77899998 888777775444332110 112221 1111110 011111123345789999
Q ss_pred EEeCCc-c-HHHHHHHHhcCCe-EEEecC
Q 028423 175 HLALYL-K-KLLFNLARDSLSS-FSFYSI 200 (209)
Q Consensus 175 ~i~g~~-~-~~~~~~ar~~g~~-vsfd~~ 200 (209)
+++.-. . ......+.++|++ +.+|++
T Consensus 70 f~a~~~~~s~~~~~~~~~aG~~~~VID~S 98 (369)
T PRK06598 70 ITCQGGDYTNEVYPKLRAAGWQGYWIDAA 98 (369)
T ss_pred EECCCHHHHHHHHHHHHhCCCCeEEEECC
Confidence 886422 1 2334456778885 778874
No 121
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=27.21 E-value=2.5e+02 Score=24.72 Aligned_cols=89 Identities=6% Similarity=-0.036 Sum_probs=50.1
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEE
Q 028423 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLH 175 (209)
Q Consensus 96 ~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~ 175 (209)
++++ |+.| ..|+.+++.|++.+.....+..-... + ...|+. +-+ .+ ..++.+++..+.+++.|+++
T Consensus 5 ~iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~------~-~s~gk~-i~f-~g--~~~~V~~l~~~~f~~vDia~ 70 (322)
T PRK06901 5 NIAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIE------P-FGEEQG-IRF-NN--KAVEQIAPEEVEWADFNYVF 70 (322)
T ss_pred eEEE-ecCc--HHHHHHHHHHHhcCCchhheeecccc------c-ccCCCE-EEE-CC--EEEEEEECCccCcccCCEEE
Confidence 3444 5555 78999999999999877755432111 0 111211 111 11 23334445555668899988
Q ss_pred EeCCccH-HHHHHHHhcCCeEEEec
Q 028423 176 LALYLKK-LLFNLARDSLSSFSFYS 199 (209)
Q Consensus 176 i~g~~~~-~~~~~ar~~g~~vsfd~ 199 (209)
+.|.... +....|.++|+.| +|+
T Consensus 71 fag~~~s~~~ap~a~~aG~~V-IDn 94 (322)
T PRK06901 71 FAGKMAQAEHLAQAAEAGCIV-IDL 94 (322)
T ss_pred EcCHHHHHHHHHHHHHCCCEE-EEC
Confidence 8544332 3344577888665 444
No 122
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=26.92 E-value=4.5e+02 Score=23.33 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=23.3
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCcccc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIITF 204 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~~ 204 (209)
+.++|+++... .+...++||++|+.+..|..-.++
T Consensus 137 ~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 137 KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 45666665322 245667788889999999875554
No 123
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.70 E-value=1.4e+02 Score=20.66 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=25.8
Q ss_pred ecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCee
Q 028423 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (209)
Q Consensus 103 VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~ 147 (209)
+.+...=+.+.+.|++.|+...............+.+.||+|.+.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~i 122 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRI 122 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEE
Confidence 444333477889999999876542211112222344668888763
No 124
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=26.50 E-value=2.1e+02 Score=24.96 Aligned_cols=116 Identities=11% Similarity=0.106 Sum_probs=59.3
Q ss_pred CchHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccc-eeEecC-CCCeeEEEEEcCCCCeeEeecc-ccc
Q 028423 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS-RLRMKR-GPTGQCVCLVDASGNRTMRPCL-SNA 155 (209)
Q Consensus 79 GG~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~-~v~~~~-~~T~~~~v~i~~~GeR~~~~~~-g~~ 155 (209)
|+...-.-..++..+|.+-++...=|. ..+.-.|+..|+.-. .|.+.. ...++.-.+.. .|-+..+.+- ...
T Consensus 24 g~~~~~fE~~~a~~~g~~~~~~~~sgt----~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~-~G~~pv~~Di~~~~ 98 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVKYAVAVSSGT----SALHLALRALGLGPGDEVIVPAYTFPATASAILW-AGAEPVFVDIDPET 98 (363)
T ss_dssp SHHHHHHHHHHHHHHTSSEEEEESSHH----HHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHH-TT-EEEEE-BETTT
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCChh----HHHHHHHHhcCCCcCceEecCCCcchHHHHHHHH-hccEEEEEeccCCc
Confidence 554444445555357877666655453 345556666676622 233322 12222222222 3444444333 244
Q ss_pred cCCCccccchhhcCCccEEEEeCCc-----cHHHHHHHHhcCCeEEEec
Q 028423 156 VKIQADELIAEDVKGSKVLHLALYL-----KKLLFNLARDSLSSFSFYS 199 (209)
Q Consensus 156 ~~l~~~~i~~~~i~~~d~v~i~g~~-----~~~~~~~ar~~g~~vsfd~ 199 (209)
..++++.+...+=++.+.|.+.-+. ++...+.|+++|+++.-|.
T Consensus 99 ~~id~~~~~~~i~~~t~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~ 147 (363)
T PF01041_consen 99 LNIDPEALEKAITPKTKAILVVHLFGNPADMDAIRAIARKHGIPLIEDA 147 (363)
T ss_dssp SSB-HHHHHHHHHTTEEEEEEE-GGGB---HHHHHHHHHHTT-EEEEE-
T ss_pred CCcCHHHHHHHhccCccEEEEecCCCCcccHHHHHHHHHHcCCcEEEcc
Confidence 5566666655444566766664432 3566788999999999998
No 125
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=25.25 E-value=1.9e+02 Score=26.26 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=36.0
Q ss_pred CceEecCch-HHHHHHHHHHhcCCCeEEEEEec------CChhHHHHHHHHHhCCCccce
Q 028423 73 PIKTIAGGS-VTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVSR 125 (209)
Q Consensus 73 ~~~~~~GG~-a~N~A~~la~rLG~~~~lig~VG------~D~~G~~i~~~L~~~GVd~~~ 125 (209)
+....-||. +.-.|..++ ++|.++.++-.-. +....+.+++.|++.||+...
T Consensus 168 ~vvIIGgG~iG~E~A~~l~-~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~ 226 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLH-GLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHK 226 (450)
T ss_pred eEEEECCCHHHHHHHHHHH-HcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEc
Confidence 344444443 456677888 7999999986432 225678889999999988653
No 126
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.25 E-value=2e+02 Score=20.20 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCccceeEec---CCCCeeEEEEEcCCCCeeEeec
Q 028423 109 GQLFVSNMQFSGVDVSRLRMK---RGPTGQCVCLVDASGNRTMRPC 151 (209)
Q Consensus 109 G~~i~~~L~~~GVd~~~v~~~---~~~T~~~~v~i~~~GeR~~~~~ 151 (209)
=+.+.+.|++.|+........ .......+.+.||+|.+.-+.+
T Consensus 82 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 82 VDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred HHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 355888999999987654322 1234556666789998865543
No 127
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=25.12 E-value=1.1e+02 Score=26.91 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=24.2
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCccc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
+.++|+++... ++...++||++|+.+..|+...+
T Consensus 136 ~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~ 177 (364)
T PRK07269 136 DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYS 177 (364)
T ss_pred CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence 56677765422 35667889999999999997443
No 128
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=25.10 E-value=1.2e+02 Score=21.98 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeecc
Q 028423 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL 152 (209)
Q Consensus 110 ~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~ 152 (209)
+.+.+.|++.|+++.........-+.++.+.||+|...=+...
T Consensus 80 d~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 80 DEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred HHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 5588999999997653321111235677778888887655443
No 129
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=25.05 E-value=89 Score=24.13 Aligned_cols=27 Identities=41% Similarity=0.424 Sum_probs=22.1
Q ss_pred eEecCchHHHHHHHHHHhcCCCe-EEEE
Q 028423 75 KTIAGGSVTNTIRGLSVGFGVPC-GLIG 101 (209)
Q Consensus 75 ~~~~GG~a~N~A~~la~rLG~~~-~lig 101 (209)
....||+.+|+|+.+|..||.+. .|+|
T Consensus 135 ~~~~g~sV~~~a~~lA~~lG~~~I~L~G 162 (170)
T PF01973_consen 135 ILYSGGSVANTALQLAYYLGFKPIYLIG 162 (170)
T ss_pred cCCCCccHHHHHHHHHHHHCCCcEEEEe
Confidence 57899999999999996689864 5554
No 130
>PRK14727 putative mercuric reductase; Provisional
Probab=25.02 E-value=1.7e+02 Score=26.68 Aligned_cols=51 Identities=12% Similarity=0.272 Sum_probs=34.5
Q ss_pred CceEecCch-HHHHHHHHHHhcCCCeEEEEEe-----cCChhHHHHHHHHHhCCCccc
Q 028423 73 PIKTIAGGS-VTNTIRGLSVGFGVPCGLIGAY-----GDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 73 ~~~~~~GG~-a~N~A~~la~rLG~~~~lig~V-----G~D~~G~~i~~~L~~~GVd~~ 124 (209)
+.....||. ++=.|..++ ++|.++.++..- -+...++.+++.|++.||.+.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~-~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~ 246 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYA-RLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVL 246 (479)
T ss_pred eEEEECCCHHHHHHHHHHH-HcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEE
Confidence 344444443 345566778 799999999651 123567889999999998864
No 131
>PF04252 RNA_Me_trans: Predicted SAM-dependent RNA methyltransferase; InterPro: IPR007364 This family of proteins are predicted to be alpha/beta-knot SAM-dependent RNA methyltransferases [].
Probab=24.92 E-value=89 Score=25.50 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=26.5
Q ss_pred CCCeeEeeccccccCCCccccchhhcCCccEEEEeCCcc
Q 028423 143 SGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYLK 181 (209)
Q Consensus 143 ~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~~ 181 (209)
+.+|.++.++.|...|+|++. ++.|+|.++|.+-
T Consensus 61 ~~~~VcLLDP~A~~~L~PeD~-----~~fd~fvfGGILG 94 (196)
T PF04252_consen 61 DKSRVCLLDPAAEKELSPEDG-----EKFDYFVFGGILG 94 (196)
T ss_pred CcCCEEEeCCCCCCCCCcccc-----CcccEEEECcccC
Confidence 456778888888788887765 4689999999873
No 132
>PRK13748 putative mercuric reductase; Provisional
Probab=24.83 E-value=1.7e+02 Score=27.11 Aligned_cols=51 Identities=12% Similarity=0.268 Sum_probs=35.1
Q ss_pred CceEecCch-HHHHHHHHHHhcCCCeEEEEEe-----cCChhHHHHHHHHHhCCCccc
Q 028423 73 PIKTIAGGS-VTNTIRGLSVGFGVPCGLIGAY-----GDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 73 ~~~~~~GG~-a~N~A~~la~rLG~~~~lig~V-----G~D~~G~~i~~~L~~~GVd~~ 124 (209)
+....-||. ++=.|..++ ++|.++.++..= .+...++.+++.|++.||++.
T Consensus 272 ~vvViGgG~ig~E~A~~l~-~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~ 328 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFA-RLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVL 328 (561)
T ss_pred eEEEECCCHHHHHHHHHHH-HcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE
Confidence 344433443 345567778 799999998651 133578889999999998864
No 133
>PTZ00058 glutathione reductase; Provisional
Probab=24.81 E-value=2e+02 Score=27.16 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=35.4
Q ss_pred CceEecCch-HHHHHHHHHHhcCCCeEEEEEec------CChhHHHHHHHHHhCCCccc
Q 028423 73 PIKTIAGGS-VTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 73 ~~~~~~GG~-a~N~A~~la~rLG~~~~lig~VG------~D~~G~~i~~~L~~~GVd~~ 124 (209)
+.....||. ++-.|..++ ++|.++.++..-. +....+.+++.|++.||+..
T Consensus 239 ~VvIIGgG~iGlE~A~~l~-~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~ 296 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVN-RLGAESYIFARGNRLLRKFDETIINELENDMKKNNINII 296 (561)
T ss_pred EEEEECCcHHHHHHHHHHH-HcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 444444443 345677888 7999999986521 23567889999999998864
No 134
>PRK11263 cardiolipin synthase 2; Provisional
Probab=24.74 E-value=2.1e+02 Score=25.93 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHHhcCCCeEE-EEEecCChhHHHHHHHHHhCCCcccee
Q 028423 79 GGSVTNTIRGLSVGFGVPCGL-IGAYGDDQQGQLFVSNMQFSGVDVSRL 126 (209)
Q Consensus 79 GG~a~N~A~~la~rLG~~~~l-ig~VG~D~~G~~i~~~L~~~GVd~~~v 126 (209)
|-.-.+....++ +-|+++.+ +-.+|.....+...+.|.+.||.+...
T Consensus 47 g~~l~~aL~~aa-~rGV~Vril~D~~gs~~~~~~~~~~L~~aGv~v~~~ 94 (411)
T PRK11263 47 GKQLHAALLAAA-QRGVKVEVLVDGYGSPDLSDEFVNELTAAGVRFRYF 94 (411)
T ss_pred HHHHHHHHHHHH-HCCCEEEEEEECCCCCCCCHHHHHHHHHCCeEEEEe
Confidence 445678888888 79999976 456887667788899999999988643
No 135
>PRK03673 hypothetical protein; Provisional
Probab=24.67 E-value=2.5e+02 Score=25.42 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEecC
Q 028423 81 SVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR 130 (209)
Q Consensus 81 ~a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~ 130 (209)
++.-.+..|. .+|+++...+.++||. +.+++.|++..=..+.+....
T Consensus 22 N~~~la~~L~-~~G~~v~~~~~v~D~~--~~i~~~l~~a~~~~DlVI~tG 68 (396)
T PRK03673 22 NAAWLADFFF-HQGLPLSRRNTVGDNL--DALVAILRERSQHADVLIVNG 68 (396)
T ss_pred HHHHHHHHHH-HCCCEEEEEEEcCCCH--HHHHHHHHHHhccCCEEEEcC
Confidence 4556677788 7999999999999994 557777776644445555543
No 136
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=24.62 E-value=1.5e+02 Score=20.48 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=29.0
Q ss_pred HHHHhcCCCeEEEEEecCChhHHHHHHHHHhCC
Q 028423 88 GLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSG 120 (209)
Q Consensus 88 ~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~G 120 (209)
..+ ++|..+.|.++=.+|--.+.+.+.|.+.|
T Consensus 29 i~~-~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 29 IIE-KFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHH-HhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 345 69999999999999999999999999988
No 137
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=24.46 E-value=5.3e+02 Score=23.30 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=13.8
Q ss_pred EEcCCCCeeEeeccccccCCCccc
Q 028423 139 LVDASGNRTMRPCLSNAVKIQADE 162 (209)
Q Consensus 139 ~i~~~GeR~~~~~~g~~~~l~~~~ 162 (209)
..|++|+|..+.+... ..+.++.
T Consensus 239 ~~D~DgDR~~ivd~~G-~~i~~d~ 261 (445)
T cd05803 239 AVDPDADRLALVDEDG-RPIGEEY 261 (445)
T ss_pred eeCCCCceEEEECCCC-CCcChHH
Confidence 3488999987766422 3444443
No 138
>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]
Probab=24.40 E-value=1.5e+02 Score=25.62 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=27.5
Q ss_pred CeEEEE-EecCChhHHHHHHHHHhCCCccceeEecC
Q 028423 96 PCGLIG-AYGDDQQGQLFVSNMQFSGVDVSRLRMKR 130 (209)
Q Consensus 96 ~~~lig-~VG~D~~G~~i~~~L~~~GVd~~~v~~~~ 130 (209)
++++|+ ..|+| |..+.+.|-+.|-.+..+.++.
T Consensus 29 kvALITGItGQD--GSYLaEfLL~KgYeVHGiiRRs 62 (376)
T KOG1372|consen 29 KVALITGITGQD--GSYLAEFLLSKGYEVHGIIRRS 62 (376)
T ss_pred eEEEEecccCCC--chHHHHHHHhCCceeeEEEeec
Confidence 488885 45888 8999999999999999887763
No 139
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=24.17 E-value=4.3e+02 Score=23.69 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=47.5
Q ss_pred CeEEEEEecCChhHHHHHHHHH-hCCCccceeEe-cCCCCeeEEEEEcCCCCeeEeeccccccCCCccccch-hhcCCcc
Q 028423 96 PCGLIGAYGDDQQGQLFVSNMQ-FSGVDVSRLRM-KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-EDVKGSK 172 (209)
Q Consensus 96 ~~~lig~VG~D~~G~~i~~~L~-~~GVd~~~v~~-~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~-~~i~~~d 172 (209)
+++++|..| ..|+.+++.|. +.......+.. ..... .|+. ..+ .+. .+..++... +.+++.|
T Consensus 2 ~VavvGATG--~VG~~ll~~L~~e~~fp~~~~~~~ss~~s---------~g~~-~~f-~~~--~~~v~~~~~~~~~~~vD 66 (366)
T TIGR01745 2 NVGLVGWRG--MVGSVLMQRMQEERDFDAIRPVFFSTSQL---------GQAA-PSF-GGT--TGTLQDAFDIDALKALD 66 (366)
T ss_pred eEEEEcCcC--HHHHHHHHHHHhCCCCccccEEEEEchhh---------CCCc-CCC-CCC--cceEEcCcccccccCCC
Confidence 355666666 78999999998 65666433322 11111 1111 110 011 112222222 2467889
Q ss_pred EEEEeCC-cc-HHHHHHHHhcCCe-EEEecC
Q 028423 173 VLHLALY-LK-KLLFNLARDSLSS-FSFYSI 200 (209)
Q Consensus 173 ~v~i~g~-~~-~~~~~~ar~~g~~-vsfd~~ 200 (209)
+++++.- .. ......++++|.+ +.+|++
T Consensus 67 ivffa~g~~~s~~~~p~~~~aG~~~~VIDnS 97 (366)
T TIGR01745 67 IIITCQGGDYTNEIYPKLRESGWQGYWIDAA 97 (366)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCCeEEEECC
Confidence 9888542 22 3344567889975 778874
No 140
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=24.10 E-value=1.2e+02 Score=25.95 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=43.7
Q ss_pred CceEecCchHHHHHHHHHHhcC---------CCeEEEEEecCChhHHHHHHHHHhCCCccceeEe
Q 028423 73 PIKTIAGGSVTNTIRGLSVGFG---------VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 73 ~~~~~~GG~a~N~A~~la~rLG---------~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~ 128 (209)
...-...|+-.+.+..|+ ++. ++++++++=+.-.. +++.+.|+++||+++-...
T Consensus 157 a~~Pl~~GP~~~fl~~L~-~lQ~~~~~~~~piRtalVTAR~apah-~RvI~TLr~Wgv~vDEafF 219 (264)
T PF06189_consen 157 ADKPLPEGPFKDFLKKLS-KLQKKFPPENSPIRTALVTARSAPAH-ERVIRTLRSWGVRVDEAFF 219 (264)
T ss_pred ccCCCcCCCHHHHHHHHH-HHHHhcCCCCCceEEEEEEcCCCchh-HHHHHHHHHcCCcHhHHHH
Confidence 345568899999999999 563 57899999888766 8899999999999875433
No 141
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=24.08 E-value=3.7e+02 Score=23.72 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=46.9
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEe--cCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCC
Q 028423 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (209)
Q Consensus 93 LG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~--~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~ 170 (209)
-..++..+|.-| ..|+.+++.|.+.+-....+.. .....+..+-. .+ ..+..++++.+.+++
T Consensus 6 ~~~kVaVvGAtG--~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~------------~~--~~~~v~~~~~~~~~~ 69 (344)
T PLN02383 6 NGPSVAIVGVTG--AVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF------------EG--RDYTVEELTEDSFDG 69 (344)
T ss_pred CCCeEEEEcCCC--hHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee------------cC--ceeEEEeCCHHHHcC
Confidence 456777777777 6799999999885543322221 11111111111 11 122233334445578
Q ss_pred ccEEEEeCCcc--HHHHHHHHhcCCeEEEecC
Q 028423 171 SKVLHLALYLK--KLLFNLARDSLSSFSFYSI 200 (209)
Q Consensus 171 ~d~v~i~g~~~--~~~~~~ar~~g~~vsfd~~ 200 (209)
+|++++..-.- ......+.++|++ .+|.+
T Consensus 70 ~D~vf~a~p~~~s~~~~~~~~~~g~~-VIDlS 100 (344)
T PLN02383 70 VDIALFSAGGSISKKFGPIAVDKGAV-VVDNS 100 (344)
T ss_pred CCEEEECCCcHHHHHHHHHHHhCCCE-EEECC
Confidence 99998854221 2233445566754 55653
No 142
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=23.72 E-value=1.6e+02 Score=20.33 Aligned_cols=36 Identities=8% Similarity=0.018 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCC
Q 028423 84 NTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSG 120 (209)
Q Consensus 84 N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~G 120 (209)
=.+...+ ++|..+.|-++=.+|--.+.+.+.|.+.|
T Consensus 23 L~~~i~~-~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 23 LKAAIEQ-KFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred HHHHHHH-HhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 3445566 79999999999999999999999999998
No 143
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=23.47 E-value=2.4e+02 Score=18.95 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCee
Q 028423 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (209)
Q Consensus 109 G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~ 147 (209)
=+.+.+.|++.|+....-......-...+.+.||+|.+-
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~i 105 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRI 105 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EE
T ss_pred HHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEE
Confidence 355777888899886432222223347778889999874
No 144
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.33 E-value=2.2e+02 Score=19.49 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhCCCccceeEecCCCC-eeEEEEEcCCCCeeEee
Q 028423 108 QGQLFVSNMQFSGVDVSRLRMKRGPT-GQCVCLVDASGNRTMRP 150 (209)
Q Consensus 108 ~G~~i~~~L~~~GVd~~~v~~~~~~T-~~~~v~i~~~GeR~~~~ 150 (209)
.=+.+.+.|++.|+....-.. ..+. +..+.+.||+|.+--+.
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DP~Gn~iei~ 119 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQ-DVFWGGYSGYFADPDGHLWEVA 119 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCc-cCCCCceEEEEECCCCCEEEEe
Confidence 346778888889987643221 2233 56677779999886553
No 145
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.24 E-value=1.9e+02 Score=19.80 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=30.0
Q ss_pred ecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEe
Q 028423 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 103 VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~ 149 (209)
+.+...=+.+.+.+++.|+++..-.. ..+.+..+.+.||+|.+--+
T Consensus 67 v~~~~~~~~~~~~~~~~g~~v~~~~~-~~~~g~~~~~~DPdGn~ie~ 112 (114)
T cd07261 67 VDDGAAVDALYAEWQAKGVKIIQEPT-EMDFGYTFVALDPDGHRLRV 112 (114)
T ss_pred cCCHHHHHHHHHHHHHCCCeEecCcc-ccCCccEEEEECCCCCEEEe
Confidence 44423347788889999988754322 22455677888999987544
No 146
>PTZ00058 glutathione reductase; Provisional
Probab=23.16 E-value=1.1e+02 Score=28.88 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhcCCCeEEEE
Q 028423 81 SVTNTIRGLSVGFGVPCGLIG 101 (209)
Q Consensus 81 ~a~N~A~~la~rLG~~~~lig 101 (209)
.+.+.|..++ ++|.++.+|=
T Consensus 59 aG~~aA~~aa-~~G~~ValIE 78 (561)
T PTZ00058 59 GGMAAARRAA-RNKAKVALVE 78 (561)
T ss_pred HHHHHHHHHH-HcCCeEEEEe
Confidence 3667777778 6888887774
No 147
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=23.14 E-value=1.4e+02 Score=27.17 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=32.7
Q ss_pred ccCCCccccchhhcCCccEEEEeCCc-----------cHHHHHHHHhcCCeEEEec
Q 028423 155 AVKIQADELIAEDVKGSKVLHLALYL-----------KKLLFNLARDSLSSFSFYS 199 (209)
Q Consensus 155 ~~~l~~~~i~~~~i~~~d~v~i~g~~-----------~~~~~~~ar~~g~~vsfd~ 199 (209)
...+++++++...-.+.+++.+..-. ++...++++++|..|..|.
T Consensus 157 ~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDe 212 (420)
T KOG0257|consen 157 DWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDE 212 (420)
T ss_pred cccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhh
Confidence 34555666666667789999997543 2345678899999999997
No 148
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=23.09 E-value=1.8e+02 Score=22.23 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=27.6
Q ss_pred cccchhhcCCccEEEEeCCc-----cHHHHHHHHhcCCeEEEec
Q 028423 161 DELIAEDVKGSKVLHLALYL-----KKLLFNLARDSLSSFSFYS 199 (209)
Q Consensus 161 ~~i~~~~i~~~d~v~i~g~~-----~~~~~~~ar~~g~~vsfd~ 199 (209)
+...++.+.+||++.++|.. ++..+++++ .+..+.+.+
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~G 95 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYG 95 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEES
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEe
Confidence 33345689999999999976 467778888 457788877
No 149
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=22.99 E-value=5.3e+02 Score=22.78 Aligned_cols=22 Identities=14% Similarity=-0.085 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCeEEEecCccc
Q 028423 182 KLLFNLARDSLSSFSFYSIIIT 203 (209)
Q Consensus 182 ~~~~~~ar~~g~~vsfd~~~~~ 203 (209)
+...++||++|+.+..|+.--+
T Consensus 154 ~~I~~la~~~gi~vivD~t~a~ 175 (380)
T PRK06176 154 AQCASVAKDHGLLTIVDNTFAT 175 (380)
T ss_pred HHHHHHHHHcCCEEEEECCccc
Confidence 4567888999999999986443
No 150
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=22.55 E-value=1.7e+02 Score=19.48 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCe
Q 028423 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNR 146 (209)
Q Consensus 110 ~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR 146 (209)
+.+.+.|++.|+....... +......+.+.||+|.+
T Consensus 76 ~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~DP~G~~ 111 (114)
T cd07245 76 DAFRARLKAAGVPYTESDV-PGDGVRQLFVRDPDGNR 111 (114)
T ss_pred HHHHHHHHHcCCCcccccC-CCCCccEEEEECCCCCE
Confidence 4578899999998653322 22445666777888865
No 151
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=22.27 E-value=3e+02 Score=20.68 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEec
Q 028423 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 82 a~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~ 129 (209)
+.-.+..|. ++|+++...+.++||. +.+.+.|++.--..+.+...
T Consensus 29 ~~~l~~~l~-~~G~~v~~~~~v~Dd~--~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 29 GPLLAALLE-EAGFNVSRLGIVPDDP--EEIREILRKAVDEADVVLTT 73 (144)
T ss_pred HHHHHHHHH-HCCCeEEEEeecCCCH--HHHHHHHHHHHhCCCEEEEC
Confidence 456677788 7999999999999995 34555555442133434443
No 152
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.23 E-value=3e+02 Score=20.75 Aligned_cols=31 Identities=19% Similarity=-0.013 Sum_probs=20.2
Q ss_pred CCccEEEEeCCccHHHH--HHHHhcCCeEEEec
Q 028423 169 KGSKVLHLALYLKKLLF--NLARDSLSSFSFYS 199 (209)
Q Consensus 169 ~~~d~v~i~g~~~~~~~--~~ar~~g~~vsfd~ 199 (209)
.+.|++|+......... ..++..++++.++.
T Consensus 50 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (229)
T cd01635 50 FKPDVVHAHGYYPAPLALLLAARLLGIPLVLTV 82 (229)
T ss_pred cCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEE
Confidence 46888888776554433 34566777777765
No 153
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=22.18 E-value=1.9e+02 Score=25.52 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHHHhCCCccceeEec-CC-CCeeEEEEE-----cCCCCeeEeeccccc
Q 028423 83 TNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RG-PTGQCVCLV-----DASGNRTMRPCLSNA 155 (209)
Q Consensus 83 ~N~A~~la~rLG~~~~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~-~~-~T~~~~v~i-----~~~GeR~~~~~~g~~ 155 (209)
+.+|+..| +-|+.+.-=+-+-|...+. |++.|.+.|.....+..- .+ .++++==+. .+.|+|.-+-...++
T Consensus 150 ~~~Als~A-~AGADiVAPSdMMDGrV~a-IR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n 227 (322)
T PRK13384 150 VKQSVTAA-KAGADMLAPSAMMDGQVKA-IRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYAN 227 (322)
T ss_pred HHHHHHHH-HcCCCeEecccccccHHHH-HHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCC
Confidence 57889999 7999987777777776654 999999999844333221 11 222221111 134676544322222
Q ss_pred c--CCCccccchhhcCCccEEEEeCCc--cHHHHHHHHhcCCeEEEec
Q 028423 156 V--KIQADELIAEDVKGSKVLHLALYL--KKLLFNLARDSLSSFSFYS 199 (209)
Q Consensus 156 ~--~l~~~~i~~~~i~~~d~v~i~g~~--~~~~~~~ar~~g~~vsfd~ 199 (209)
. .+... ..+.=+++|++.+-.-+ ++-..+.....+.++.-|.
T Consensus 228 ~~eAlre~--~~D~~EGAD~lMVKPal~YLDIi~~~k~~~~lPvaaYq 273 (322)
T PRK13384 228 GRQALLEA--LLDEAEGADILMVKPGTPYLDVLSRLRQETHLPLAAYQ 273 (322)
T ss_pred HHHHHHHH--HhhHhhCCCEEEEcCCchHHHHHHHHHhccCCCEEEEE
Confidence 2 22222 22334689999885433 3333333344556665543
No 154
>PRK14694 putative mercuric reductase; Provisional
Probab=22.17 E-value=2.1e+02 Score=25.91 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEEec------CChhHHHHHHHHHhCCCccc
Q 028423 82 VTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 82 a~N~A~~la~rLG~~~~lig~VG------~D~~G~~i~~~L~~~GVd~~ 124 (209)
++-.|..++ ++|.++.++.. + +...++.+++.|++.||+..
T Consensus 190 G~E~A~~l~-~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~ 236 (468)
T PRK14694 190 ALELAQAFA-RLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVL 236 (468)
T ss_pred HHHHHHHHH-HcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 567788888 79999999965 2 23578899999999999865
No 155
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=22.11 E-value=2.8e+02 Score=20.93 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=48.0
Q ss_pred Eec-CChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEeeccccccCCCccccchhhcCCccEEEEeCCc
Q 028423 102 AYG-DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKVLHLALYL 180 (209)
Q Consensus 102 ~VG-~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~~~g~~~~l~~~~i~~~~i~~~d~v~i~g~~ 180 (209)
.+| +...|+.+.+.|.+.|.++..+.+.+.+... ..+-..+..+ ..+++.+ .+.++++|.|+.....
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~------~~~~~~~~~d-----~~d~~~~-~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED------SPGVEIIQGD-----LFDPDSV-KAALKGADAVIHAAGP 70 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH------CTTEEEEESC-----TTCHHHH-HHHHTTSSEEEECCHS
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc------ccccccceee-----ehhhhhh-hhhhhhcchhhhhhhh
Confidence 345 4689999999999999777766654332111 1121211111 1122222 3467789999886532
Q ss_pred -------cHHHHHHHHhcCCeEEE
Q 028423 181 -------KKLLFNLARDSLSSFSF 197 (209)
Q Consensus 181 -------~~~~~~~ar~~g~~vsf 197 (209)
....++.++++|++-.+
T Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~v 94 (183)
T PF13460_consen 71 PPKDVDAAKNIIEAAKKAGVKRVV 94 (183)
T ss_dssp TTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred hcccccccccccccccccccccce
Confidence 23455677888875444
No 156
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=21.99 E-value=2.6e+02 Score=19.07 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeE
Q 028423 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM 148 (209)
Q Consensus 110 ~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~ 148 (209)
+.+.+.|++.|+....-.......+..+.+.||+|.+--
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~ 111 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFG 111 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEE
Confidence 456678888998764322222235677788899998743
No 157
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=21.95 E-value=1.1e+02 Score=21.01 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=16.6
Q ss_pred CChhHHHHHHHHHhCCCc-cceeE
Q 028423 105 DDQQGQLFVSNMQFSGVD-VSRLR 127 (209)
Q Consensus 105 ~D~~G~~i~~~L~~~GVd-~~~v~ 127 (209)
-|+.|+-+++.|+..|.+ +..++
T Consensus 14 lDPqG~ai~~al~~lG~~~v~~Vr 37 (80)
T PF02700_consen 14 LDPQGEAIKRALHRLGYDGVKDVR 37 (80)
T ss_dssp --HHHHHHHHHHHHTT-TTEEEEE
T ss_pred cCcHHHHHHHHHHHcCCcccCcEE
Confidence 499999999999999977 44443
No 158
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=21.76 E-value=1.9e+02 Score=22.48 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=36.6
Q ss_pred cCchHHHHHHHHHHhcCC-CeEEEEEe-cCChhHHHHHHHHHhCCCccceeEec
Q 028423 78 AGGSVTNTIRGLSVGFGV-PCGLIGAY-GDDQQGQLFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 78 ~GG~a~N~A~~la~rLG~-~~~lig~V-G~D~~G~~i~~~L~~~GVd~~~v~~~ 129 (209)
.||-+.-.+..|+ +-|. +..++++- ......+...+.|++.|..+.++..+
T Consensus 9 ~gglg~~la~~La-~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D 61 (181)
T PF08659_consen 9 LGGLGQSLARWLA-ERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCD 61 (181)
T ss_dssp TSHHHHHHHHHHH-HTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--
T ss_pred ccHHHHHHHHHHH-HcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccC
Confidence 4667778888888 5664 57888888 44556778999999999988887654
No 159
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=21.61 E-value=2.7e+02 Score=18.95 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=29.3
Q ss_pred ecCChhHHHHHHHHHhCCCccceeEecCCCCeeEEEEEcCCCCeeEee
Q 028423 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (209)
Q Consensus 103 VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~i~~~GeR~~~~ 150 (209)
+.+...=+.+.+.|++.|+...........-+..+.+.||+|.+.-+.
T Consensus 65 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 112 (117)
T cd07240 65 VASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELF 112 (117)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEE
Confidence 443323355788899999987543321112346667789999886554
No 160
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=21.22 E-value=84 Score=26.82 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEE
Q 028423 82 VTNTIRGLSVGFGVPCGLIGA 102 (209)
Q Consensus 82 a~N~A~~la~rLG~~~~lig~ 102 (209)
+.|+|++|+ ++|.++.++-.
T Consensus 18 a~~lA~aLa-~~G~kVg~lD~ 37 (261)
T PF09140_consen 18 AVNLAVALA-RMGKKVGLLDL 37 (261)
T ss_dssp HHHHHHHHH-CTT--EEEEE-
T ss_pred HHHHHHHHH-HCCCeEEEEec
Confidence 689999999 89999887754
No 161
>PRK08064 cystathionine beta-lyase; Provisional
Probab=21.11 E-value=5.8e+02 Score=22.56 Aligned_cols=35 Identities=11% Similarity=-0.030 Sum_probs=23.7
Q ss_pred CccEEEEeCCc--------cHHHHHHHHhcCCeEEEecCcccc
Q 028423 170 GSKVLHLALYL--------KKLLFNLARDSLSSFSFYSIIITF 204 (209)
Q Consensus 170 ~~d~v~i~g~~--------~~~~~~~ar~~g~~vsfd~~~~~~ 204 (209)
+.++|+++... ++...+++|++|+.+..|..-.++
T Consensus 138 ~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 180 (390)
T PRK08064 138 NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTP 180 (390)
T ss_pred CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcc
Confidence 45677765422 245667889999999999865444
No 162
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=20.77 E-value=1.7e+02 Score=26.33 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEec------CChhHHHHHHHHHhCCCccc
Q 028423 82 VTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 82 a~N~A~~la~rLG~~~~lig~VG------~D~~G~~i~~~L~~~GVd~~ 124 (209)
+.-.|..++ ++|.++.++..-. +....+.+++.|++.||+..
T Consensus 160 g~E~A~~l~-~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 160 SLEVLENLY-ERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred HHHHHHHHH-hCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEE
Confidence 445677788 7999999987521 23567889999999999874
No 163
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.51 E-value=2.2e+02 Score=17.45 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=27.1
Q ss_pred EEEEEecCC-----hhHHHHHHHHHhCCCccceeEecCCCCeeEEEE
Q 028423 98 GLIGAYGDD-----QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL 139 (209)
Q Consensus 98 ~lig~VG~D-----~~G~~i~~~L~~~GVd~~~v~~~~~~T~~~~v~ 139 (209)
++++.+|.. .....+.+.|.+.||+...+.........++++
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i 48 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVV 48 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEE
Confidence 456666653 234568899999999998776533334555554
No 164
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=20.43 E-value=1.5e+02 Score=26.03 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=30.1
Q ss_pred CeEEE-EEecCChhHHHHHHHHHhCCCccceeEecCC--CCeeE
Q 028423 96 PCGLI-GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG--PTGQC 136 (209)
Q Consensus 96 ~~~li-g~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~--~T~~~ 136 (209)
++++| |..|+| |..+-+.|-+.|-.+..+.++.. .|...
T Consensus 3 K~ALITGITGQD--GsYLa~lLLekGY~VhGi~Rrss~~n~~ri 44 (345)
T COG1089 3 KVALITGITGQD--GSYLAELLLEKGYEVHGIKRRSSSFNTPRI 44 (345)
T ss_pred ceEEEecccCCc--hHHHHHHHHhcCcEEEEEeeccccCCcccc
Confidence 45666 556988 99999999999999999987632 45544
No 165
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=20.36 E-value=1.7e+02 Score=19.27 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=23.9
Q ss_pred eEEEEEecCChhH--HHHHHHHHhCCCccceeEec
Q 028423 97 CGLIGAYGDDQQG--QLFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 97 ~~lig~VG~D~~G--~~i~~~L~~~GVd~~~v~~~ 129 (209)
..+++.+|.|..| ..+.+.|.+.|.+...+...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~ 36 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA 36 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE
Confidence 3578999999888 77889999999888766543
No 166
>PLN02507 glutathione reductase
Probab=20.30 E-value=2.7e+02 Score=25.66 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=34.2
Q ss_pred ceEecCch-HHHHHHHHHHhcCCCeEEEEEec------CChhHHHHHHHHHhCCCccc
Q 028423 74 IKTIAGGS-VTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 74 ~~~~~GG~-a~N~A~~la~rLG~~~~lig~VG------~D~~G~~i~~~L~~~GVd~~ 124 (209)
.....||. +.-.|..++ ++|.++.++..-. +....+.+.+.|++.||+..
T Consensus 206 vvVIGgG~ig~E~A~~l~-~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~ 262 (499)
T PLN02507 206 AVVLGGGYIAVEFASIWR-GMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLH 262 (499)
T ss_pred EEEECCcHHHHHHHHHHH-HcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEE
Confidence 33333443 445677788 7999999986521 33567788889999998865
No 167
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=20.01 E-value=1.8e+02 Score=25.64 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEE---e----cCChhHHHHHHHHHhCCCccc
Q 028423 82 VTNTIRGLSVGFGVPCGLIGA---Y----GDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 82 a~N~A~~la~rLG~~~~lig~---V----G~D~~G~~i~~~L~~~GVd~~ 124 (209)
+.-+|..|+ ++|.++.++.. + .+....+.+++.+++.||+..
T Consensus 156 g~E~A~~l~-~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 204 (396)
T PRK09754 156 GLELAASAT-QRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRIL 204 (396)
T ss_pred HHHHHHHHH-HcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 556677888 79999998864 1 223456788889999998865
Done!