BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028424
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGW3|RP12A_ARATH 26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis
thaliana GN=RPN12A PE=1 SV=1
Length = 267
Score = 343 bits (879), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 173/208 (83%), Positives = 189/208 (90%)
Query: 2 VSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQ 61
++ DIYEHAV+LSVK EDQDAFERDFFQLKPYY DA R+P SP E +ILGLNLLRLLVQ
Sbjct: 60 IARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPQSPQENLILGLNLLRLLVQ 119
Query: 62 NRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLL 121
NRIAEFHTELELLSS LE+PCIKHAVELEQSFMEGAYNRVLSA+Q P+ TY YFMDLL
Sbjct: 120 NRIAEFHTELELLSSATLEDPCIKHAVELEQSFMEGAYNRVLSARQTAPDATYVYFMDLL 179
Query: 122 AKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAK 181
AKT+RDEIAGCSEKAYDY+SI DA QMLLF+SDQELL YV +EHPEWE+K+GFV FQKAK
Sbjct: 180 AKTIRDEIAGCSEKAYDYVSISDARQMLLFSSDQELLTYVTDEHPEWEVKEGFVVFQKAK 239
Query: 182 DSAPCKEIPSLQLINQTLSYARELERIV 209
++APCKEIPSLQLINQTLSYARELERIV
Sbjct: 240 ETAPCKEIPSLQLINQTLSYARELERIV 267
>sp|Q9FHY0|RP12B_ARATH 26S proteasome non-ATPase regulatory subunit RPN12B OS=Arabidopsis
thaliana GN=RPN12B PE=2 SV=2
Length = 233
Score = 295 bits (754), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 137/177 (77%), Positives = 155/177 (87%)
Query: 33 YYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQ 92
++ R+PPSP E +I+GLNLLRLLVQNRIAEFHTEL LLSS LENPCIKHAVELEQ
Sbjct: 57 FFLCTRNRIPPSPQENLIMGLNLLRLLVQNRIAEFHTELGLLSSATLENPCIKHAVELEQ 116
Query: 93 SFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFT 152
SFMEGAYNRVLSA+Q P+ETY YFMDLLAKT+RDEIAGCSEKAYD+LSI + +MLLF+
Sbjct: 117 SFMEGAYNRVLSARQTAPDETYVYFMDLLAKTIRDEIAGCSEKAYDHLSISEGCKMLLFS 176
Query: 153 SDQELLEYVKEEHPEWEMKDGFVFFQKAKDSAPCKEIPSLQLINQTLSYARELERIV 209
SDQ+LL YV EEHPEWE+KDG V FQK +++APCKEIPSLQLINQTLSY RELERI+
Sbjct: 177 SDQQLLTYVNEEHPEWEVKDGLVVFQKTRETAPCKEIPSLQLINQTLSYTRELERIL 233
>sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulatory subunit 8
OS=Dictyostelium discoideum GN=psmD8-1 PE=3 SV=2
Length = 263
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 144/209 (68%), Gaps = 4/209 (1%)
Query: 1 MVSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLV 60
+++ +I E L S+K++D D+FER F QLK YY D + PS EY I+GLNL+RLL
Sbjct: 59 VLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLA 118
Query: 61 QNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDL 120
+++ +EFH+E+EL+ L+N IK + +E+S EG+YN+++ ++ VP+E Y F+D+
Sbjct: 119 KHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDI 178
Query: 121 LAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKA 180
LA +++++IA CSEK++ LS+KDA ++LLF + + +Y+KE + W+++ + F
Sbjct: 179 LADSIKEDIANCSEKSFKTLSLKDAEKVLLFNDNNQFQQYIKERN--WKVQGDVIQF--G 234
Query: 181 KDSAPCKEIPSLQLINQTLSYARELERIV 209
+ EIPSLQLI+QTL YA+ELERIV
Sbjct: 235 NNDNQTVEIPSLQLIHQTLHYAKELERIV 263
>sp|Q9CX56|PSMD8_MOUSE 26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus
GN=Psmd8 PE=1 SV=2
Length = 353
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 136/215 (63%), Gaps = 12/215 (5%)
Query: 1 MVSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLV 60
+++ DI E S+ +D +FER QLK YY D ++LP S + +LGLNLL LL
Sbjct: 145 ILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLS 204
Query: 61 QNRIAEFHTELELLSSTALE-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMD 119
QNR+AEFHTELE L + ++ N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D
Sbjct: 205 QNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFID 264
Query: 120 LLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFF- 177
+L T+RDEIAGC EKAY+ + +A ++L F++ +++ +Y K+ W + + + F
Sbjct: 265 ILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKRG--WVLGPNNYYSFA 322
Query: 178 ---QKAKDSAPCKEIPSLQLINQTLSYARELERIV 209
QK +DS IPS +L Q + YAR+LE IV
Sbjct: 323 SQQQKPEDST----IPSTELAKQVIEYARQLEMIV 353
>sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo
abelii GN=PSMD8 PE=2 SV=2
Length = 289
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 131/211 (62%), Gaps = 4/211 (1%)
Query: 1 MVSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLV 60
+++ DI E S+ +D +FER QLK YY D ++LP S + +LGLNLL LL
Sbjct: 81 ILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLS 140
Query: 61 QNRIAEFHTELELLSSTALE-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMD 119
QNR+AEFHTELE L + ++ N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D
Sbjct: 141 QNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFID 200
Query: 120 LLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFFQ 178
+L T+RDEIAGC EKAY+ + +A ++L F + +++ +Y K+ W + + + F
Sbjct: 201 ILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRG--WVLGPNNYYSFA 258
Query: 179 KAKDSAPCKEIPSLQLINQTLSYARELERIV 209
+ IPS +L Q + YAR+LE IV
Sbjct: 259 SQQQKPEDTTIPSTELAKQVIEYARQLEMIV 289
>sp|Q3SYT7|PSMD8_BOVIN 26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus
GN=PSMD8 PE=2 SV=3
Length = 287
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 134/213 (62%), Gaps = 8/213 (3%)
Query: 1 MVSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLV 60
+++ DI E S+ +D +FER QLK YY D ++LP S + +LGLNLL LL
Sbjct: 79 ILARDIQEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLS 138
Query: 61 QNRIAEFHTELELLSSTALE-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMD 119
QNR+AEFHTELE L + ++ N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D
Sbjct: 139 QNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFID 198
Query: 120 LLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFF-- 177
+L T+RDEIAGC EKAY+ + +A ++L F + +++ +Y K+ + + + F
Sbjct: 199 ILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGINNYYSFASQ 258
Query: 178 -QKAKDSAPCKEIPSLQLINQTLSYARELERIV 209
QK +D+ IPS +L Q + YAR+LE IV
Sbjct: 259 QQKPEDTT----IPSTELAKQVIEYARQLEMIV 287
>sp|P48556|PSMD8_HUMAN 26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens
GN=PSMD8 PE=1 SV=2
Length = 350
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 131/211 (62%), Gaps = 4/211 (1%)
Query: 1 MVSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLV 60
+++ DI E S+ +D +FER QLK YY D ++LP S + +LGLNLL LL
Sbjct: 142 ILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLS 201
Query: 61 QNRIAEFHTELELLSSTALE-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMD 119
QNR+AEFHTELE L + ++ N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D
Sbjct: 202 QNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFID 261
Query: 120 LLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFFQ 178
+L T+RDEIAGC EKAY+ + +A ++L F + +++ +Y K+ W + + + F
Sbjct: 262 ILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRG--WVLGPNNYYSFA 319
Query: 179 KAKDSAPCKEIPSLQLINQTLSYARELERIV 209
+ IPS +L Q + YAR+LE IV
Sbjct: 320 SQQQKPEDTTIPSTELAKQVIEYARQLEMIV 350
>sp|P50524|RPN12_SCHPO 26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn12 PE=1 SV=1
Length = 270
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 24/224 (10%)
Query: 5 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 64
+++E+ VL+S++ D ++F R Q+ P+Y D+ L PS ++ GLNLL LL +NRI
Sbjct: 52 NVFEYGVLVSIQTCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRI 108
Query: 65 AEFHTELELLSSTAL--ENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLA 122
AEFHT LE + +L +P ++ + LEQ+ MEGA+++V S ++ + YFM ++
Sbjct: 109 AEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVM 168
Query: 123 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAKD 182
VR+EIA C+EK Y + + +A +L + +E E + EE W+++DG ++F K +
Sbjct: 169 SMVRNEIATCAEKVYSEIPLSNATSLLYLENTKE-TEKLAEERG-WDIRDGVIYFPKEAN 226
Query: 183 S-----------------APCKEIPSLQLINQTLSYARELERIV 209
+ P ++ I Q LSY ELE+IV
Sbjct: 227 ALETEDGMLIDEEDELELPPTASKHTISSIRQLLSYTSELEQIV 270
>sp|Q23449|PSMD8_CAEEL 26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis
elegans GN=rpn-12 PE=1 SV=1
Length = 250
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 128/212 (60%), Gaps = 10/212 (4%)
Query: 1 MVSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLV 60
+ S D+YE +VLL++ D + F+ Q+ YYT A + S N++++ GL+L+ LL
Sbjct: 46 LASKDLYEISVLLAILKHDFETFDDYINQMHTYYTMAPEN---SENKHLMTGLHLMFLLA 102
Query: 61 QNRIAEFHTELELL-SSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMD 119
NR+++FH LE + N I V +EQS MEGAYN+V+ ++N+P+ Y F+
Sbjct: 103 ANRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIR 162
Query: 120 LLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDG--FVFF 177
++ T+R EIA EK++ L+ KDA MLLF +D+++ ++ +E +W + DG +VF
Sbjct: 163 IMLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDEQMKKFGQER--KWHL-DGERYVFE 219
Query: 178 QKAKDSAPCKEIPSLQLINQTLSYARELERIV 209
+ P + ++++ QTL YA++LE+IV
Sbjct: 220 IEVAQEKPVN-LDTVRVATQTLFYAKQLEQIV 250
>sp|P32496|RPN12_YEAST 26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN12 PE=1 SV=3
Length = 274
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 18/223 (8%)
Query: 1 MVSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLV 60
M++ I E L S++ + D+FE F QLKPYY +L S + ++ L LL LL
Sbjct: 56 MITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLS 115
Query: 61 QNRIAEFHTELELLS---STALENPCIKHAVELEQSFMEGAYNRVL----SAKQNVPNET 113
QN +FH+EL+ L ++ + + ++L++ MEG+Y + S QN+
Sbjct: 116 QNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNIS--E 173
Query: 114 YGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDG 173
+ F D+L +RDEIA +E +YD+L + + +L F +++E ++ E + W + +
Sbjct: 174 FDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN--WPIVNS 231
Query: 174 FVFF-----QKA--KDSAPCKEIPSLQLINQTLSYARELERIV 209
V+F +KA +D +E +I + + YA +E IV
Sbjct: 232 KVYFNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 274
>sp|A4QNR8|LENG8_DANRE Leukocyte receptor cluster member 8 homolog OS=Danio rerio GN=leng8
PE=2 SV=1
Length = 839
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 5 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 64
++YE ++++ D + F + QLK Y D PS N L+ +
Sbjct: 661 EVYETHARIALEKGDHEEFNQCQTQLKALYKDC-----PSDNVGEFTAYRLIYYIFTKNS 715
Query: 65 AEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKT 124
+ TEL L++ +PC+ HA+EL ++ G ++R Q P Y +D +
Sbjct: 716 GDLTTELVYLTTELRADPCVAHALELRTAWALGNFHRFFRLYQKAPRMA-AYLIDKFVER 774
Query: 125 VRD 127
R+
Sbjct: 775 ERN 777
>sp|Q96PV6|LENG8_HUMAN Leukocyte receptor cluster member 8 OS=Homo sapiens GN=LENG8 PE=2
SV=2
Length = 779
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 5 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 64
++YE ++++ D + F + QLK Y + LP + E+ +L +
Sbjct: 585 EVYETHARIALEKGDHEEFNQCQTQLKSLYAE---NLPGNVGEFT--AYRILYYIFTKNS 639
Query: 65 AEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKT 124
+ TEL L+ +PC+ HA+ L ++ G Y+R + P + GY +D A
Sbjct: 640 GDITTELAYLTRELKADPCVAHALALRTAWALGNYHRFFRLYCHAPCMS-GYLVDKFADR 698
Query: 125 VR 126
R
Sbjct: 699 ER 700
>sp|Q54EQ1|EIF3K_DICDI Eukaryotic translation initiation factor 3 subunit K
OS=Dictyostelium discoideum GN=eif3K PE=3 SV=2
Length = 246
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 125 VRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQ 178
+R+ I+G Y +SI G++L + +L++Y++ + P W++ D V Q
Sbjct: 167 IRNFISGVLSITYQNISITMLGELLNLSDRTQLVDYIQSKQPTWKISDSTVSLQ 220
>sp|A4XQT3|SECA_PSEMY Protein translocase subunit SecA OS=Pseudomonas mendocina (strain
ymp) GN=secA PE=3 SV=2
Length = 911
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q9LCT3|SECA_PSEAE Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=secA
PE=3 SV=1
Length = 916
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|B7UZI1|SECA_PSEA8 Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain
LESB58) GN=secA PE=3 SV=1
Length = 916
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q02H37|SECA_PSEAB Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=secA PE=3 SV=1
Length = 916
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|A6VB75|SECA_PSEA7 Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain
PA7) GN=secA PE=3 SV=1
Length = 916
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q3J799|SECA_NITOC Protein translocase subunit SecA OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=secA PE=3 SV=1
Length = 903
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L NL+R+ RI+ L + A+E+P + A+E Q +EG
Sbjct: 577 PGSTRFYLSLEDNLMRIFASERISGLMQRLGMEEGEAIEHPWVTRAIENAQRKVEG 632
>sp|C1DQA8|SECA_AZOVD Protein translocase subunit SecA OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=secA PE=3 SV=1
Length = 915
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L NL+R+ +R+ F L + + A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQAGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q1GZ36|SECA_METFK Protein translocase subunit SecA OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=secA PE=3 SV=1
Length = 908
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 37 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
AG++ P + Y+ L LLR+ +R+ L++ A+E+P + A+E Q +
Sbjct: 577 AGRQGDPGSSRFYLSLEDQLLRIFASDRVGAIMERLKMPEGEAIEHPWVTRAIENAQRKV 636
Query: 96 EG 97
EG
Sbjct: 637 EG 638
>sp|Q7NQ59|SECA_CHRVO Protein translocase subunit SecA OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=secA PE=3 SV=1
Length = 903
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L LLR+ +R+A L++ A+E+P + ++E Q +EG
Sbjct: 583 PGSSRFYLCLEDPLLRIFASDRVAAIMDRLKMPEGEAIEHPWVTRSIENAQRKVEG 638
>sp|Q0AH18|SECA_NITEC Protein translocase subunit SecA OS=Nitrosomonas eutropha (strain
C91) GN=secA PE=3 SV=1
Length = 909
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFME 96
P S Y+ L LLR+ +R+A T L++ A+E+P + A+E Q +E
Sbjct: 583 PGSSRFYLSLEDPLLRIFSSDRVANIMTRLKMPEGEAIEHPWVTRAIENAQRKVE 637
>sp|Q82W86|SECA_NITEU Protein translocase subunit SecA OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=secA PE=3 SV=1
Length = 909
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 37 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
AG++ P + Y+ L LLR+ +R+A T L++ A+E+P + A+E Q +
Sbjct: 577 AGRQGDPGSSRFYLSLEDPLLRIFSSDRVANIMTRLKMPEGEAIEHPWVTRAIENAQRKV 636
Query: 96 EG 97
E
Sbjct: 637 EA 638
>sp|Q88N69|SECA_PSEPK Protein translocase subunit SecA OS=Pseudomonas putida (strain
KT2440) GN=secA PE=3 SV=2
Length = 911
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|A5W8P2|SECA_PSEP1 Protein translocase subunit SecA OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=secA PE=3 SV=2
Length = 911
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|B0KFR8|SECA_PSEPG Protein translocase subunit SecA OS=Pseudomonas putida (strain
GB-1) GN=secA PE=3 SV=1
Length = 911
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|B1J3I9|SECA_PSEPW Protein translocase subunit SecA OS=Pseudomonas putida (strain
W619) GN=secA PE=3 SV=1
Length = 911
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|A1S2G7|SECA_SHEAM Protein translocase subunit SecA OS=Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B) GN=secA PE=3 SV=1
Length = 908
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFME 96
P S Y+ + NL+R+ R+A +L + A+E+P + A+E Q +E
Sbjct: 581 PGSSRFYLSMEDNLMRIFASERVANMMKKLGMEEGEAIEHPWVTRAIENAQRKVE 635
>sp|C6BVR6|SECA_DESAD Protein translocase subunit SecA OS=Desulfovibrio salexigens
(strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763)
GN=secA PE=3 SV=1
Length = 837
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L +L+RL +RIA +L + +EN + A+E Q +EG
Sbjct: 534 PGSTRFYLALDDDLMRLFGSDRIAGIMDKLGMEEGEPIENGMVTKAIENSQKKVEG 589
>sp|A4VPA3|SECA_PSEU5 Protein translocase subunit SecA OS=Pseudomonas stutzeri (strain
A1501) GN=secA PE=3 SV=2
Length = 913
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDSLMRIFASDRVKNFMKALGMESGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q5R0N7|SECA_IDILO Protein translocase subunit SecA OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=secA PE=3 SV=1
Length = 905
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 37 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
AG++ P + Y+ L L+R+ +RI L + A+E+P + A+E Q +
Sbjct: 575 AGRQGDPGSSRFYLSLEDPLMRIFASDRIGTMMKRLGMKEGEAIEHPWVTRAIENAQRKV 634
Query: 96 EG 97
EG
Sbjct: 635 EG 636
>sp|A3CM30|GLMM_STRSV Phosphoglucosamine mutase OS=Streptococcus sanguinis (strain SK36)
GN=glmM PE=3 SV=1
Length = 450
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Query: 28 FQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHA 87
QL + GK+L E I L+ + V+N + A+E P IK
Sbjct: 346 VQLTKVMQETGKKLSELAAEVTIYPQKLVNIRVENS----------MKDKAMEVPAIKTV 395
Query: 88 VELEQSFMEGAYNRVLSAKQNVP----------NETYGYFMDLLAKTVRDEIA 130
+E ++ M G ++ P +E Y++D +A VRDEI
Sbjct: 396 IERMEAEMAGNGRILVRPSGTEPLLRVMAEAPTDEEVNYYVDTIANVVRDEIG 448
>sp|Q83F06|SECA_COXBU Protein translocase subunit SecA OS=Coxiella burnetii (strain RSA
493 / Nine Mile phase I) GN=secA PE=3 SV=1
Length = 913
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ + NLLR+ R++ L + +E+P I A+E Q +EG
Sbjct: 586 PGSSQFYLSMEDNLLRIFAAERMSNMMRRLGVKEDDVIEHPWITRAIEKAQRRVEG 641
>sp|Q32NW2|LENG8_XENLA Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis
GN=leng8 PE=2 SV=1
Length = 800
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 5 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTD--AGKRLPPSPNEYMILGLNLLRLLVQN 62
++YE ++++ D + F + QLK Y + AG N +L +
Sbjct: 622 EVYETHARIALEKGDHEEFNQCQAQLKSLYAENLAG-------NVGEFTAYRILYYIFTK 674
Query: 63 RIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLA 122
+ TEL L+ + C+ HA+ L +++ Y+R + P + GY +D A
Sbjct: 675 NSGDLTTELAHLTKELKADACVAHALSLREAWALSNYHRFFKLYRQAPRMS-GYLIDKFA 733
Query: 123 KTVR 126
+ R
Sbjct: 734 ERER 737
>sp|P47521|Y279_MYCGE Uncharacterized protein MG279 OS=Mycoplasma genitalium (strain
ATCC 33530 / G-37 / NCTC 10195) GN=MG279 PE=4 SV=1
Length = 218
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 62 NRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
N+I+E++TE++ +S +N +K E+E+S EG
Sbjct: 47 NKISEYNTEIKKISQNIFQNNLVKTLSEVEKSLNEG 82
>sp|C4LA32|SECA_TOLAT Protein translocase subunit SecA OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=secA PE=3 SV=1
Length = 907
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ + +L+R+ +R++ +L + A+E+P + A+E Q +EG
Sbjct: 581 PGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEHGEAIEHPWVSKAIENAQRKVEG 636
>sp|Q2SA01|SECA_HAHCH Protein translocase subunit SecA OS=Hahella chejuensis (strain KCTC
2396) GN=secA PE=3 SV=1
Length = 908
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
P S Y+ L NL+R+ +R+ L + A+E+ + +A+E Q +EG
Sbjct: 580 PGSTRFYLSLEDNLMRIFASDRVKNIMQALGMQKGEAIEHRMVSNAIEKAQRKVEG 635
>sp|Q1QVH6|SECA_CHRSD Protein translocase subunit SecA OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=secA
PE=3 SV=1
Length = 912
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 37 AGKRLPPSPNEYMI-LGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
AG++ P + + L NL+RL +R+ L L A+E+ + +AVE Q +
Sbjct: 572 AGRQGDPGSTRFFLSLEDNLMRLFGSDRVQRLMQALGLEHGEAIEHKMVSNAVERAQKKV 631
Query: 96 EG 97
EG
Sbjct: 632 EG 633
>sp|Q2Y647|SECA1_NITMU Protein translocase subunit SecA 1 OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=secA1 PE=3 SV=1
Length = 917
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 42 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFME 96
P S Y+ L LLR+ +R+A L + A+E+P + A+E Q +E
Sbjct: 583 PGSSRFYLSLEDALLRIFASDRVASIMQRLNMPQGEAIEHPWVTRAIENAQRKVE 637
>sp|B3PCL0|SECA_CELJU Protein translocase subunit SecA OS=Cellvibrio japonicus (strain
Ueda107) GN=secA PE=3 SV=1
Length = 915
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 37 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
AG++ P Y+ L NL+R+ +R+ F L + A+E+ + +A+E Q +
Sbjct: 579 AGRQGDPGVTRFYLSLEDNLMRIFASDRMRNFMQALGMEKGEAIEHRMVNNAIENAQRKV 638
Query: 96 EG 97
EG
Sbjct: 639 EG 640
>sp|Q1I5C6|SECA_PSEE4 Protein translocase subunit SecA OS=Pseudomonas entomophila (strain
L48) GN=secA PE=3 SV=2
Length = 912
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 36 DAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
DAG S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +
Sbjct: 580 DAG-----SSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKV 634
Query: 96 EG 97
EG
Sbjct: 635 EG 636
>sp|A5IBV4|SECA_LEGPC Protein translocase subunit SecA OS=Legionella pneumophila (strain
Corby) GN=secA PE=3 SV=2
Length = 896
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 37 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
AG++ P + Y+ L NL+R+ R+A L + +E+ + A+E Q +
Sbjct: 571 AGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRLGMQPGEPIEHSLVTRAIENAQRKL 630
Query: 96 EGAY 99
EG +
Sbjct: 631 EGHH 634
>sp|Q5X5A1|SECA_LEGPA Protein translocase subunit SecA OS=Legionella pneumophila (strain
Paris) GN=secA PE=3 SV=1
Length = 896
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 37 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
AG++ P + Y+ L NL+R+ R+A L + +E+ + A+E Q +
Sbjct: 571 AGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRLGMQPGEPIEHSLVTRAIENAQRKL 630
Query: 96 EGAY 99
EG +
Sbjct: 631 EGHH 634
>sp|Q5ZVH7|SECA_LEGPH Protein translocase subunit SecA OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=secA PE=3 SV=2
Length = 896
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 37 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
AG++ P + Y+ L NL+R+ R+A L + +E+ + A+E Q +
Sbjct: 571 AGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRLGMQPGEPIEHSLVTRAIENAQRKL 630
Query: 96 EGAY 99
EG +
Sbjct: 631 EGHH 634
>sp|Q3K7T9|SECA_PSEPF Protein translocase subunit SecA OS=Pseudomonas fluorescens (strain
Pf0-1) GN=secA PE=1 SV=2
Length = 912
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 36 DAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
DAG S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +
Sbjct: 580 DAG-----SSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKV 634
Query: 96 EG 97
EG
Sbjct: 635 EG 636
>sp|Q21MG1|SECA_SACD2 Protein translocase subunit SecA OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=secA PE=3 SV=1
Length = 917
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 37 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
AG++ P + Y+ L NL+R+ +R+ F + + A+E+ + +A+E Q +
Sbjct: 576 AGRQGDPGLSRFYLSLEDNLMRIFASDRMRSFMQSIGMEKGEAIEHRMVTNAIEKAQRKV 635
Query: 96 EG 97
EG
Sbjct: 636 EG 637
>sp|Q4K7C1|SECA_PSEF5 Protein translocase subunit SecA OS=Pseudomonas fluorescens (strain
Pf-5 / ATCC BAA-477) GN=secA PE=3 SV=1
Length = 913
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 36 DAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 95
DAG S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +
Sbjct: 580 DAG-----SSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKV 634
Query: 96 EG 97
EG
Sbjct: 635 EG 636
>sp|Q87WZ3|SECA_PSESM Protein translocase subunit SecA OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=secA PE=3 SV=1
Length = 913
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 48 YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 587 YLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q48EG6|SECA_PSE14 Protein translocase subunit SecA OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=secA PE=3 SV=1
Length = 913
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 48 YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 97
Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 587 YLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,820,586
Number of Sequences: 539616
Number of extensions: 3010237
Number of successful extensions: 8540
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8472
Number of HSP's gapped (non-prelim): 62
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)