Query 028424
Match_columns 209
No_of_seqs 107 out of 286
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_T 26S proteasome regulato 100.0 3.7E-66 1.3E-70 452.0 13.7 206 2-209 57-274 (274)
2 4b0z_A RPN12, 26S proteasome r 100.0 2E-54 6.9E-59 368.7 20.2 173 2-179 54-228 (229)
3 1rz4_A Eukaryotic translation 100.0 1.4E-29 4.8E-34 215.5 7.0 159 18-180 24-192 (226)
4 3t5v_A Nuclear mRNA export pro 99.9 6.1E-24 2.1E-28 188.6 13.8 168 2-175 56-259 (316)
5 3txn_A 26S proteasome regulato 97.7 0.0039 1.3E-07 56.5 18.8 168 5-180 181-362 (394)
6 4b4t_R RPN7, 26S proteasome re 97.5 0.0043 1.5E-07 56.0 16.0 165 11-180 175-393 (429)
7 4b4t_P 26S proteasome regulato 97.2 0.0091 3.1E-07 54.3 14.6 170 5-180 219-405 (445)
8 4b4t_Q 26S proteasome regulato 97.1 0.048 1.6E-06 46.6 17.5 173 5-179 217-401 (434)
9 4b4t_O 26S proteasome regulato 96.5 0.049 1.7E-06 48.8 13.9 155 4-162 169-329 (393)
10 1ufm_A COP9 complex subunit 4; 95.5 0.047 1.6E-06 38.9 6.9 59 121-180 12-76 (84)
11 3t5x_A PCI domain-containing p 92.8 0.38 1.3E-05 39.2 7.8 71 88-162 84-169 (203)
12 4b4t_S RPN3, 26S proteasome re 88.5 0.36 1.2E-05 45.2 4.2 75 87-162 345-424 (523)
13 3chm_A COP9 signalosome comple 84.2 8.7 0.0003 30.4 9.7 99 58-162 33-132 (169)
14 3txn_A 26S proteasome regulato 81.8 8.1 0.00028 34.5 9.6 140 4-154 220-362 (394)
15 3e21_A HFAF1, FAS-associated f 70.1 2.8 9.6E-05 26.3 2.3 28 142-171 9-36 (45)
16 1y6u_A XIS, excisionase from t 64.0 14 0.00047 24.9 5.1 40 139-179 16-57 (70)
17 2heo_A Z-DNA binding protein 1 50.4 23 0.0008 23.1 4.3 47 123-170 9-56 (67)
18 2gmg_A Hypothetical protein PF 35.8 28 0.00096 25.6 3.1 36 123-160 10-48 (105)
19 2cpt_A SKD1 protein, vacuolar 33.4 91 0.0031 22.8 5.7 48 82-136 20-76 (117)
20 2lju_A Putative oxidoreductase 32.1 17 0.0006 26.8 1.4 22 148-171 63-84 (108)
21 3mn2_A Probable ARAC family tr 31.9 1.2E+02 0.0042 20.7 6.4 63 93-162 29-92 (108)
22 3mkl_A HTH-type transcriptiona 30.1 1.3E+02 0.0046 21.0 6.1 59 95-162 36-94 (120)
23 2lkp_A Transcriptional regulat 29.9 89 0.0031 21.8 5.0 55 114-171 22-77 (119)
24 3oio_A Transcriptional regulat 29.5 1.3E+02 0.0045 20.7 5.9 61 94-162 35-95 (113)
25 3oou_A LIN2118 protein; protei 28.3 1.4E+02 0.0049 20.3 5.9 62 93-162 32-93 (108)
26 1r1u_A CZRA, repressor protein 27.7 1.1E+02 0.0038 21.0 5.1 55 114-171 16-71 (106)
27 2jt1_A PEFI protein; solution 27.7 93 0.0032 21.0 4.5 35 126-162 6-46 (77)
28 1r1t_A Transcriptional repress 27.4 1.2E+02 0.0042 21.7 5.5 55 114-171 36-91 (122)
29 3lsg_A Two-component response 27.4 1.4E+02 0.005 20.1 6.1 61 94-162 31-91 (103)
30 1wfd_A Hypothetical protein 15 27.3 1.1E+02 0.0039 21.2 5.1 48 82-136 17-72 (93)
31 2l01_A Uncharacterized protein 26.1 36 0.0012 23.6 2.1 39 137-180 22-60 (77)
32 2jya_A AGR_C_3324P, uncharacte 26.0 19 0.00066 26.5 0.7 22 148-171 55-76 (106)
33 1jr3_D DNA polymerase III, del 25.8 2E+02 0.0068 23.8 7.3 115 52-170 166-295 (343)
34 2htj_A P fimbrial regulatory p 25.7 1.3E+02 0.0044 19.6 5.0 43 126-170 2-45 (81)
35 2k9s_A Arabinose operon regula 23.1 1.8E+02 0.0062 19.7 5.9 61 94-162 32-92 (107)
36 2kko_A Possible transcriptiona 21.4 65 0.0022 22.5 2.8 54 114-170 15-69 (108)
37 3jth_A Transcription activator 21.0 97 0.0033 20.8 3.6 56 113-171 12-68 (98)
38 1y0u_A Arsenical resistance op 20.5 1.5E+02 0.005 19.9 4.5 54 114-171 21-75 (96)
No 1
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-66 Score=451.98 Aligned_cols=206 Identities=29% Similarity=0.522 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHHhhhcChHHHHHHHHhhHHHHhcCCCCCCCCcchhHHHHHHHHHHHhhCCHHHHHHHHHhccHh---h
Q 028424 2 VSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSST---A 78 (209)
Q Consensus 2 ~ar~vlEi~a~~sl~~~D~~~F~~~~~qLk~~Y~~~~~~l~~s~~~~~il~l~LL~LL~~n~i~efh~~Le~l~~~---~ 78 (209)
+||+|||+||++||+++|+++|+||++|||+||+++.+++|+|+++.+|+||||||||++|+++|||++||.||.. +
T Consensus 57 ~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~ 136 (274)
T 4b4t_T 57 ITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNL 136 (274)
T ss_dssp ----CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhH
Confidence 7999999999999999999999999999999999998999999999999999999999999999999999999964 5
Q ss_pred hcCchhhhHHHHHHHHHhcChHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHH
Q 028424 79 LENPCIKHAVELEQSFMEGAYNRVLSAKQNV--PNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQE 156 (209)
Q Consensus 79 ~~~~~I~~~~~leq~L~eGnY~kv~~~~~~~--P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e 156 (209)
++||+|+||++||+++|+|||+|||++.++. |+++|++||++|++|+|.+||+||+|||++||+++++++|+|+|++|
T Consensus 137 ~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e 216 (274)
T 4b4t_T 137 EDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKE 216 (274)
T ss_dssp TCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHH
T ss_pred hcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHH
Confidence 5899999999999999999999999987765 46678999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCceeeCCeEEEecCCCCC-------CCCCCChHHHHHHHHhHHHHhhhcC
Q 028424 157 LLEYVKEEHPEWEMKDGFVFFQKAKDSA-------PCKEIPSLQLINQTLSYARELERIV 209 (209)
Q Consensus 157 ~~~f~~~~~~gW~~~~~~i~f~~~~~~~-------~~~~~~~~~li~~~l~Ya~elE~IV 209 (209)
+.+|++ ++||++++|.++|+..+.+. ...++|+.++|+|+|+||+|||+||
T Consensus 217 ~~~F~~--~~gW~~~~~~v~F~~~~~~~~~~~~~~~~~~ips~~li~~~l~YA~elE~IV 274 (274)
T 4b4t_T 217 TEKFAL--ERNWPIVNSKVYFNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 274 (274)
T ss_dssp HHHHHH--HTTCCCCSSCCCC---------------------------------------
T ss_pred HHHHHH--HcCCEEeCCEeEECCccccccccccccccccCcHHHHHHHHHHHHHHhhhcC
Confidence 999985 68999999999998653221 2356899999999999999999998
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-54 Score=368.68 Aligned_cols=173 Identities=35% Similarity=0.667 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHHHhhhcChHHHHHHHHhhHHHHhcCCCCCCCCcchhHHHHHHHHHHHhhCCHHHHHHHHHhccHhh--h
Q 028424 2 VSGDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTA--L 79 (209)
Q Consensus 2 ~ar~vlEi~a~~sl~~~D~~~F~~~~~qLk~~Y~~~~~~l~~s~~~~~il~l~LL~LL~~n~i~efh~~Le~l~~~~--~ 79 (209)
+||+|||+||++||+.+|+++|+||++|||+||.++ +++|+++.+|+||||||+|++|+++|||++|+.+|++. +
T Consensus 54 ~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~---~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~ 130 (229)
T 4b0z_A 54 FARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFE 130 (229)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSC---CCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcc---CCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhh
Confidence 699999999999999999999999999999999875 78899999999999999999999999999999999763 6
Q ss_pred cCchhhhHHHHHHHHHhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHH
Q 028424 80 ENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLE 159 (209)
Q Consensus 80 ~~~~I~~~~~leq~L~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~ 159 (209)
+||+|+||++|+|++|+|||++||++.+++|++.+++||+.|++|+|.+|++||+|||++||+++++++|||+|++|+.+
T Consensus 131 ~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~ 210 (229)
T 4b0z_A 131 RDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEK 210 (229)
T ss_dssp HCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCceeeCCeEEEec
Q 028424 160 YVKEEHPEWEMKDGFVFFQK 179 (209)
Q Consensus 160 f~~~~~~gW~~~~~~i~f~~ 179 (209)
|++ ++||+++||.|+|++
T Consensus 211 f~~--~~gw~i~dg~i~F~~ 228 (229)
T 4b0z_A 211 LAE--ERGWDIRDGVIYFPK 228 (229)
T ss_dssp HHH--HHTCEEETTEEECC-
T ss_pred HHH--HcCCEEeCCEEecCC
Confidence 985 579999999999986
No 3
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=99.96 E-value=1.4e-29 Score=215.48 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=130.2
Q ss_pred cChHHHHHHHHh--hHHHHhcCCC-------CCCCCcchhHHHHHHHHHHHhhCCHHHHHHHHHhccHhhhcCchhhhHH
Q 028424 18 EDQDAFERDFFQ--LKPYYTDAGK-------RLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAV 88 (209)
Q Consensus 18 ~D~~~F~~~~~q--Lk~~Y~~~~~-------~l~~s~~~~~il~l~LL~LL~~n~i~efh~~Le~l~~~~~~~~~I~~~~ 88 (209)
..++.|++|++| ++++|....+ .+.|+....+++|++||.+|+++..+|||+.++.||+..++||+|+++|
T Consensus 24 ~~l~~le~Yv~qq~~~~~YD~~anlalLklYq~~p~~~~~~ii~~iLlk~L~~~p~~DF~~~l~LIp~~~~~~~~I~~i~ 103 (226)
T 1rz4_A 24 ENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQIL 103 (226)
T ss_dssp GGHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTTSTHHHHHHHTSCHHHHTSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHcCCHHHHHHHHHhCChhhhcCHHHHHHH
Confidence 456778888887 4444421100 0245667789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhhhCCCc
Q 028424 89 ELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEW 168 (209)
Q Consensus 89 ~leq~L~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~~~~gW 168 (209)
.|+++||+|+|++||++.+.- +.+...|.-|.+++|.+|+.|+++||++||+++++++||+.+++++.+|++ ++||
T Consensus 104 ~L~~~L~~~~y~~fW~~l~~~--~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~--~~GW 179 (226)
T 1rz4_A 104 YLGDLLETCHFQAFWQALDEN--MDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS--KYGW 179 (226)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT--CHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH--HHTC
T ss_pred HHHHHHHcCCHHHHHHHHhcC--hhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH--HCCC
Confidence 999999999999999997653 234445555999999999999999999999999999998778999999986 4699
Q ss_pred eee-CCeEEEecC
Q 028424 169 EMK-DGFVFFQKA 180 (209)
Q Consensus 169 ~~~-~~~i~f~~~ 180 (209)
+++ +|.|+|+..
T Consensus 180 ~vd~~g~I~~~n~ 192 (226)
T 1rz4_A 180 SADESGQIFICSQ 192 (226)
T ss_dssp EECC--CEECCCH
T ss_pred EECCCccEEeCCC
Confidence 997 678877653
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.1e-24 Score=188.61 Aligned_cols=168 Identities=17% Similarity=0.266 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHh------hhcChH-----HHHHHH---HhhHHHHhcCCCCCCCCcchhHHHHHHHHHHHhhCCHHHH
Q 028424 2 VSGDIYEHAVLLSV------KVEDQD-----AFERDF---FQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEF 67 (209)
Q Consensus 2 ~ar~vlEi~a~~sl------~~~D~~-----~F~~~~---~qLk~~Y~~~~~~l~~s~~~~~il~l~LL~LL~~n~i~ef 67 (209)
.+.+|||.+|++.| ..+|.+ +++||+ .+|+.+|.+....-..+++..+|.||+||+.|.+ .++
T Consensus 56 ~~v~v~E~~aRf~i~~~~~L~~~~~~f~~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~---~~~ 132 (316)
T 3t5v_A 56 EAVDCNERIVRIHLLILHIMVKSNVEFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRD---PQY 132 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTC---THH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcc---chH
Confidence 36789999999986 445542 444555 4778889874221135789999999999998875 478
Q ss_pred HHHHHhccHhhhcCchhhhHHHHHHHHH---------------hcChHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHH
Q 028424 68 HTELELLSSTALENPCIKHAVELEQSFM---------------EGAYNRVLSAKQN--VPNETYGYFMDLLAKTVRDEIA 130 (209)
Q Consensus 68 h~~Le~l~~~~~~~~~I~~~~~leq~L~---------------eGnY~kv~~~~~~--~P~~~~~~fm~~L~~tiR~~ia 130 (209)
...+..||+++++||.|+++++|++++. .|||+++|++..+ +|- +-+++|+.+++++|..++
T Consensus 133 ~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~py-L~aclle~~~~~vR~~AL 211 (316)
T 3t5v_A 133 DENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPL-LMGFFLQMHLTDIRFYAL 211 (316)
T ss_dssp HHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCH-HHHHHHGGGHHHHHHHHH
T ss_pred HHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999985 4999999999987 332 348999999999999999
Q ss_pred HHHHhccC----CccHHHHHHhhCCCCHHHHHHHHhhhCCCceeeC-CeE
Q 028424 131 GCSEKAYD----YLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKD-GFV 175 (209)
Q Consensus 131 ~~iekAY~----sl~l~~a~~lL~f~~~~e~~~f~~~~~~gW~~~~-~~i 175 (209)
.+|.+||. ++|+++++++|+|++++|+.+|++ ..||++.+ +.+
T Consensus 212 ~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~--~~gl~~~~~~~~ 259 (316)
T 3t5v_A 212 RALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN--YYSIEIINGDAA 259 (316)
T ss_dssp HHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH--HTTCCEETTTEE
T ss_pred HHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH--HCCCeEeCCCCc
Confidence 99999994 899999999999999999999995 68999985 434
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.69 E-value=0.0039 Score=56.46 Aligned_cols=168 Identities=8% Similarity=0.071 Sum_probs=114.7
Q ss_pred HHHHHHHHHHh-hhcChHH-HHHHHHhhHHHHhcCCCCCCCCcchhHHHHHHHHHHHhhCCHHHHHHHHHhccHhh-hcC
Q 028424 5 DIYEHAVLLSV-KVEDQDA-FERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTA-LEN 81 (209)
Q Consensus 5 ~vlEi~a~~sl-~~~D~~~-F~~~~~qLk~~Y~~~~~~l~~s~~~~~il~l~LL~LL~~n~i~efh~~Le~l~~~~-~~~ 81 (209)
.+-|.+.++.+ ..+|+.. +..++.-.+. |.. .+++.+..++-|-+|.-|..++..|+...+.. +... ..+
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~-f~~-----~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~-~~~~~~~~ 253 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEG-FDS-----VDSVKALTSLKYMLLCKIMLGQSDDVNQLVSG-KLAITYSG 253 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-HTT-----TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHS-HHHHTTCS
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhc-ccc-----cccHHHHHHHHHHHHHHHHcCCHHHHHHHhcc-ccccccCC
Confidence 45678888888 8888754 3333333322 321 23455566666666666677887888754321 1111 178
Q ss_pred chhhhHHHHHHHHHhcChHHHHHHhhc----CC-CcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHH
Q 028424 82 PCIKHAVELEQSFMEGAYNRVLSAKQN----VP-NETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQE 156 (209)
Q Consensus 82 ~~I~~~~~leq~L~eGnY~kv~~~~~~----~P-~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e 156 (209)
|.|.....|-++...|++..+...... .. .+......+.|..++|......+-+.|++|+++++++.++++ +++
T Consensus 254 pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~e 332 (394)
T 3txn_A 254 RDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQ 332 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHH
T ss_pred ccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHH
Confidence 999999999999999999888775432 22 222344567899999999999999999999999999999995 887
Q ss_pred HHHHHh----hhCCCceee--CCeEEEecC
Q 028424 157 LLEYVK----EEHPEWEMK--DGFVFFQKA 180 (209)
Q Consensus 157 ~~~f~~----~~~~gW~~~--~~~i~f~~~ 180 (209)
+...+. ...-.=++| +|.+++..+
T Consensus 333 vE~~L~~lI~dg~I~a~IDq~~giv~~~~~ 362 (394)
T 3txn_A 333 VEKKLSQMILDKKFSGILDQGEGVLIVFEE 362 (394)
T ss_dssp HHHHHHHHHHTTSSCEEEETTTTEEEECCC
T ss_pred HHHHHHHHHHCCCeeEEEcCCCCEEEECCC
Confidence 776664 222233677 676777654
No 6
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0043 Score=56.03 Aligned_cols=165 Identities=13% Similarity=0.100 Sum_probs=114.1
Q ss_pred HHHHhhhcChHHHHHHHHhhHHHHhcCCCCCCCCcchhHHHHHHHHHHHhhCCHHHHHHHHHh-----------------
Q 028424 11 VLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELEL----------------- 73 (209)
Q Consensus 11 a~~sl~~~D~~~F~~~~~qLk~~Y~~~~~~l~~s~~~~~il~l~LL~LL~~n~i~efh~~Le~----------------- 73 (209)
+++++..+|...-..+..+.+...... +....+..+-.+.-+++++.++.-++...+-.
T Consensus 175 irl~l~~~d~~~~~~~~~ka~~~~~~~----~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~ 250 (429)
T 4b4t_R 175 ARLGFFYNDQLYVKEKLEAVNSMIEKG----GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIA 250 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTC----CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhcC----CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHH
Confidence 567888999999999999988887654 33455667777777777777776654332211
Q ss_pred ----------ccH-h----h----------hcCchhhhHHHHHHHHHhcChHHHHHHhh----cCC--CcchHHHHHHHH
Q 028424 74 ----------LSS-T----A----------LENPCIKHAVELEQSFMEGAYNRVLSAKQ----NVP--NETYGYFMDLLA 122 (209)
Q Consensus 74 ----------l~~-~----~----------~~~~~I~~~~~leq~L~eGnY~kv~~~~~----~~P--~~~~~~fm~~L~ 122 (209)
.+. + + ..+|.+....++-.++..++|..+|.... +.. .+..+.-.+.|.
T Consensus 251 ~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~ 330 (429)
T 4b4t_R 251 TYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFV 330 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHH
Confidence 010 0 1 13456666677788889999999987431 111 234455577899
Q ss_pred HHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHH----HHhhhCCCceee--CCeEEEecC
Q 028424 123 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLE----YVKEEHPEWEMK--DGFVFFQKA 180 (209)
Q Consensus 123 ~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~----f~~~~~~gW~~~--~~~i~f~~~ 180 (209)
..+|..+...+.+.|++|+++.+|+.||++ ++++.+ ++.+..-.=++| +|.|++..+
T Consensus 331 ~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~ 393 (429)
T 4b4t_R 331 REMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP 393 (429)
T ss_dssp HHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred HHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence 999999999999999999999999999998 665554 554434455677 666666553
No 7
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0091 Score=54.31 Aligned_cols=170 Identities=11% Similarity=0.076 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHhhHHHHhcCCCCCCCCcchhHHHHHHHHHHHhhCCHHHHHHHHHhccHhhhcCchh
Q 028424 5 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCI 84 (209)
Q Consensus 5 ~vlEi~a~~sl~~~D~~~F~~~~~qLk~~Y~~~~~~l~~s~~~~~il~l~LL~LL~~n~i~efh~~Le~l~~~~~~~~~I 84 (209)
..++.++++....+|+.+--+|+-++-.-|... ..+......+.+-+++++-.+...+...++.++-.+ ...+.|
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~----~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l 293 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK----SDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKL 293 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc----CCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-cccccc
Confidence 578999999999999987777766665555432 112233445555566655555555666666665432 334566
Q ss_pred hhHHHHHHHHHhcCh---HHHHHHhhcC--CCc------chHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCC
Q 028424 85 KHAVELEQSFMEGAY---NRVLSAKQNV--PNE------TYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 153 (209)
Q Consensus 85 ~~~~~leq~L~eGnY---~kv~~~~~~~--P~~------~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~ 153 (209)
...-.|.++...++. ..+...+... |.+ ....-...|..+++......+.+-|++|+++.++.+|+++
T Consensus 294 ~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~- 372 (445)
T 4b4t_P 294 ESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT- 372 (445)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-
T ss_pred HHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-
Confidence 666677888887764 5554443311 111 1145578899999999999999999999999999999998
Q ss_pred HHHHHHHHhh----hCCCceee--CCeEEEecC
Q 028424 154 DQELLEYVKE----EHPEWEMK--DGFVFFQKA 180 (209)
Q Consensus 154 ~~e~~~f~~~----~~~gW~~~--~~~i~f~~~ 180 (209)
++++..++.. ..-.=.+| +|.|+|..+
T Consensus 373 ~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~ 405 (445)
T 4b4t_P 373 ESQTETYISDLVNQGIIYAKVNRPAKIVNFEKP 405 (445)
T ss_dssp HHHHHHHHHHHHHHTSSCCEEETTTTEEEC---
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCC
Confidence 8899888752 12223667 676777654
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.048 Score=46.63 Aligned_cols=173 Identities=11% Similarity=0.118 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHhhHHHHhcCCCCCCCCcchhHHHHHHHHHHHhhCCHHHHHHHHHhccHhh-hcCch
Q 028424 5 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTA-LENPC 83 (209)
Q Consensus 5 ~vlEi~a~~sl~~~D~~~F~~~~~qLk~~Y~~~~~~l~~s~~~~~il~l~LL~LL~~n~i~efh~~Le~l~~~~-~~~~~ 83 (209)
.+++.+..+....+|..+-.+|+.+.-..|.... ...........+.+.++.....+...+....+....... ..++.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT-THNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRG 295 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT-TSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchh
Confidence 4566777777778888877777766655554421 111222334455555555555566555555554433222 26677
Q ss_pred hhhHHHHHHHHHhcChHHHHHHhhcC-----CCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHH
Q 028424 84 IKHAVELEQSFMEGAYNRVLSAKQNV-----PNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELL 158 (209)
Q Consensus 84 I~~~~~leq~L~eGnY~kv~~~~~~~-----P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~ 158 (209)
+.....+......+++..+-...... ..+.....++.+..++|.....-+.+.|++|+++.++..|+++ ++++.
T Consensus 296 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E 374 (434)
T 4b4t_Q 296 IDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVE 374 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHH
Confidence 77777888888888877765543211 1233456678889999999999999999999999999999997 77777
Q ss_pred HHHhh----hCCCceee--CCeEEEec
Q 028424 159 EYVKE----EHPEWEMK--DGFVFFQK 179 (209)
Q Consensus 159 ~f~~~----~~~gW~~~--~~~i~f~~ 179 (209)
.++.. ..-.=.+| +|.+++..
T Consensus 375 ~~l~~lI~~~~i~a~id~~~g~v~~~~ 401 (434)
T 4b4t_Q 375 GKLSQMILDKIFYGVLDQGNGWLYVYE 401 (434)
T ss_dssp HHHHHHHHHTSSCCEEETTTTEEECC-
T ss_pred HHHHHHHhCCCcceecccccCeEeeCC
Confidence 66542 12222455 56666654
No 9
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.049 Score=48.76 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhhhcChHHHHHHHHhhHHHHhcCCCCCCCCcchhHHHHHHHHH-HHhhCCHHHHHHHHHhccHhh-hcC
Q 028424 4 GDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLR-LLVQNRIAEFHTELELLSSTA-LEN 81 (209)
Q Consensus 4 r~vlEi~a~~sl~~~D~~~F~~~~~qLk~~Y~~~~~~l~~s~~~~~il~l~LL~-LL~~n~i~efh~~Le~l~~~~-~~~ 81 (209)
-.+|+..+.+.-..+|.++|-++.-+--..|... ..+ ++..-.-+++.++- .|...++-.|-.+|..-.... .++
T Consensus 169 ~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~-~~~--~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~ 245 (393)
T 4b4t_O 169 NSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPS-TSI--TLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVND 245 (393)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SSC--SHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc-ccC--CHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcC
Confidence 3567888888888888888777665544444422 112 22333344444443 566677778877776543333 367
Q ss_pred chhhhHHHHHHHHHhcChHHHHHHhh-cCC-CcchHHHHHHHHHHHHHHHHHHHH--hccCCccHHHHHHhhCCCCHHHH
Q 028424 82 PCIKHAVELEQSFMEGAYNRVLSAKQ-NVP-NETYGYFMDLLAKTVRDEIAGCSE--KAYDYLSIKDAGQMLLFTSDQEL 157 (209)
Q Consensus 82 ~~I~~~~~leq~L~eGnY~kv~~~~~-~~P-~~~~~~fm~~L~~tiR~~ia~~ie--kAY~sl~l~~a~~lL~f~~~~e~ 157 (209)
|......+|=+....|++..+-.... +.+ .+..+...+.+...+|.-....+. +.|++||.+.+++.|+++ ++|+
T Consensus 246 ~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~ev 324 (393)
T 4b4t_O 246 SNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNV 324 (393)
T ss_dssp SSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHH
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHH
Confidence 88999999999999999999976432 111 123445555667777766665443 457799999999999997 8899
Q ss_pred HHHHh
Q 028424 158 LEYVK 162 (209)
Q Consensus 158 ~~f~~ 162 (209)
..++-
T Consensus 325 E~lli 329 (393)
T 4b4t_O 325 EHLVM 329 (393)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 10
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=95.51 E-value=0.047 Score=38.89 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhh----hCCCceee--CCeEEEecC
Q 028424 121 LAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE----EHPEWEMK--DGFVFFQKA 180 (209)
Q Consensus 121 L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~----~~~gW~~~--~~~i~f~~~ 180 (209)
|.+++.+.....+.+-|++|+++.++++|+++ ++++.+++.. ..-.=++| +|.|.|..+
T Consensus 12 L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 12 LDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp CCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred HHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 45667777777888999999999999999998 8888777642 22233556 667777553
No 11
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=92.77 E-value=0.38 Score=39.21 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=54.7
Q ss_pred HHHHHHHHhcChHHHHHHhhcCCCcchHHHHH----HHHHHHHHHHHHHHHh------ccCCccHHHHHHhhCCC-----
Q 028424 88 VELEQSFMEGAYNRVLSAKQNVPNETYGYFMD----LLAKTVRDEIAGCSEK------AYDYLSIKDAGQMLLFT----- 152 (209)
Q Consensus 88 ~~leq~L~eGnY~kv~~~~~~~P~~~~~~fm~----~L~~tiR~~ia~~iek------AY~sl~l~~a~~lL~f~----- 152 (209)
..|=+++-.||..++-+..++.. ..|++ .+++++|.-+...+-| .|+.||+++++.-|.+.
T Consensus 84 ~~L~~Avr~Gdl~~f~~~l~~~~----~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~ 159 (203)
T 3t5x_A 84 AEVTRAVSEGNLLLLHEALAKHE----AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDV 159 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTH----HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHhH----HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCC
Confidence 47889999999999988766522 34554 3788999887766655 69999999999999774
Q ss_pred CHHHHHHHHh
Q 028424 153 SDQELLEYVK 162 (209)
Q Consensus 153 ~~~e~~~f~~ 162 (209)
+++|++..+.
T Consensus 160 ~~~evE~ila 169 (203)
T 3t5x_A 160 DIDEVQCILA 169 (203)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6888877764
No 12
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.45 E-value=0.36 Score=45.18 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcChHHHHHHhhcCC-----CcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHH
Q 028424 87 AVELEQSFMEGAYNRVLSAKQNVP-----NETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYV 161 (209)
Q Consensus 87 ~~~leq~L~eGnY~kv~~~~~~~P-----~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~ 161 (209)
=..|-++...||-.++-....+.- ...| -++..+...+...-...+.++|++||+.+++..|++++++++...+
T Consensus 345 Y~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty-~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iV 423 (523)
T 4b4t_S 345 YYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMV 423 (523)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT-HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhcceeccCChh-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHH
Confidence 346778888899888766443211 1112 2456666677777788999999999999999999998777666655
Q ss_pred h
Q 028424 162 K 162 (209)
Q Consensus 162 ~ 162 (209)
.
T Consensus 424 A 424 (523)
T 4b4t_S 424 S 424 (523)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=84.17 E-value=8.7 Score=30.36 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=72.6
Q ss_pred HHhhCCHHHHHHHHHhccH-hhhcCchhhhHHHHHHHHHhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhc
Q 028424 58 LLVQNRIAEFHTELELLSS-TALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKA 136 (209)
Q Consensus 58 LL~~n~i~efh~~Le~l~~-~~~~~~~I~~~~~leq~L~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekA 136 (209)
-|...++=.|..+| .+|. ...++..-+...+|=+....|+|...-....+.|. .. +.+...+|.=.+..+...
T Consensus 33 Al~~p~vf~F~eLL-~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~p~--L~---~~~~~KlrlLtL~sLa~~ 106 (169)
T 3chm_A 33 ATSHPSLFAFSEIL-ALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPH--LS---PDQILKLKQLTVLTLAES 106 (169)
T ss_dssp HHHCTTCCCCHHHH-TCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGGSCC--CC---HHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCeeehHHHh-CChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHhCcc--hH---HHHHHHHHHHHHHHHHHh
Confidence 44455566676666 4443 22233334777889999999999987766666673 22 677788888777766666
Q ss_pred cCCccHHHHHHhhCCCCHHHHHHHHh
Q 028424 137 YDYLSIKDAGQMLLFTSDQELLEYVK 162 (209)
Q Consensus 137 Y~sl~l~~a~~lL~f~~~~e~~~f~~ 162 (209)
-+.||.+++++-|+++|.+|+..|+-
T Consensus 107 ~~~lsy~~I~~~l~i~~~~evE~lvI 132 (169)
T 3chm_A 107 NKVLPYDTLMVELDVSNVRELEDFLI 132 (169)
T ss_dssp CSEEEHHHHHHHHTCCSHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 78999999999999999999999986
No 14
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.78 E-value=8.1 Score=34.55 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhhhcChHHHHHHHHhh-HHHHhcCCCCCCCCcchhHHHH-HHHHHHHhhCCHHHHHHHHHhccHhhhcC
Q 028424 4 GDIYEHAVLLSVKVEDQDAFERDFFQL-KPYYTDAGKRLPPSPNEYMILG-LNLLRLLVQNRIAEFHTELELLSSTALEN 81 (209)
Q Consensus 4 r~vlEi~a~~sl~~~D~~~F~~~~~qL-k~~Y~~~~~~l~~s~~~~~il~-l~LL~LL~~n~i~efh~~Le~l~~~~~~~ 81 (209)
.+++=++++.++..+|..++....++= ...| .. +++-. ..|+.....+++.+|...|+...+....|
T Consensus 220 ~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~----------pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D 288 (394)
T 3txn_A 220 LTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SG----------RDIDAMKSVAEASHKRSLADFQAALKEYKKELAED 288 (394)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CS----------HHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CC----------ccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 567888999999999988888766543 1223 21 12222 34666778999999999999988877899
Q ss_pred chhh-hHHHHHHHHHhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCH
Q 028424 82 PCIK-HAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSD 154 (209)
Q Consensus 82 ~~I~-~~~~leq~L~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~ 154 (209)
|+++ |.-.|.+.+.+.++-+++..++.+.-+..+-....=.+-+-..++.+|...=-.=.++....++.+..+
T Consensus 289 ~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~ 362 (394)
T 3txn_A 289 VIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEE 362 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCC
Confidence 9976 467899999999999999888776422222222222667777888888766656667778888877644
No 15
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=70.09 E-value=2.8 Score=26.26 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=24.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhhCCCceee
Q 028424 142 IKDAGQMLLFTSDQELLEYVKEEHPEWEMK 171 (209)
Q Consensus 142 l~~a~~lL~f~~~~e~~~f~~~~~~gW~~~ 171 (209)
+.+++.+.|.++++++..|+. +.+|.++
T Consensus 9 ia~F~~iTG~~d~~~A~~~Le--a~nWDLe 36 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLE--QNNWDLV 36 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHH--HTTTCHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH--HcCCcHH
Confidence 678899999998899999994 5799986
No 16
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=64.03 E-value=14 Score=24.93 Aligned_cols=40 Identities=15% Similarity=0.383 Sum_probs=32.1
Q ss_pred CccHHHHHHhhCCCCHHHHHHHHhhh-CCCceee-CCeEEEec
Q 028424 139 YLSIKDAGQMLLFTSDQELLEYVKEE-HPEWEMK-DGFVFFQK 179 (209)
Q Consensus 139 sl~l~~a~~lL~f~~~~e~~~f~~~~-~~gW~~~-~~~i~f~~ 179 (209)
.|+++++|.+||+. ..-+.+.+.+. ...|.+. ++++.|.+
T Consensus 16 ~LTi~EaAeylgIg-~~~l~~L~~~~~~~~~~~~iG~~~lI~r 57 (70)
T 1y6u_A 16 TLTIEEASKYFRIG-ENKLRRLAEENKNANWLIMNGNRIQIKR 57 (70)
T ss_dssp EEEHHHHHHHTCSC-HHHHHHHHHHCTTCSSEEEETTEEEEES
T ss_pred eeCHHHHHHHHCcC-HHHHHHHHHcCCCCCcEEEeCCEEEEEH
Confidence 58999999999999 99999998652 4689887 55566665
No 17
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=50.39 E-value=23 Score=23.06 Aligned_cols=47 Identities=6% Similarity=-0.009 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhh-hCCCcee
Q 028424 123 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEM 170 (209)
Q Consensus 123 ~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~-~~~gW~~ 170 (209)
+..|.+|+..+...=..++..++|+.|+++ ...+...++. ++.|+..
T Consensus 9 ~~~~~~IL~~L~~~~~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEe
Confidence 346888999887643569999999999998 7777777753 2457743
No 18
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.80 E-value=28 Score=25.59 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhccCCccHHHHHHhhCCC--CHHH-HHHH
Q 028424 123 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFT--SDQE-LLEY 160 (209)
Q Consensus 123 ~tiR~~ia~~iekAY~sl~l~~a~~lL~f~--~~~e-~~~f 160 (209)
.|+|++|+..+.. .-++..+++..|+++ ++.+ +-+-
T Consensus 10 ~T~Re~Ii~lL~~--~plta~ei~~~l~i~~~~~ke~Vy~h 48 (105)
T 2gmg_A 10 ATRREKIIELLLE--GDYSPSELARILDMRGKGSKKVILED 48 (105)
T ss_dssp HHHHHHHHHHTTT--SCBCTTHHHHSSCCCSSCCHHHHHHH
T ss_pred ccHHHHHHHHHHc--CCCCHHHHHHHhCCCCCChHHHHHHH
Confidence 5899999999973 689999999999994 4566 4433
No 19
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=33.43 E-value=91 Score=22.84 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=32.0
Q ss_pred chhhhHHHHHHHHHhcChHHHHHHhhcCCCcchHHHHHHH---------HHHHHHHHHHHHHhc
Q 028424 82 PCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLL---------AKTVRDEIAGCSEKA 136 (209)
Q Consensus 82 ~~I~~~~~leq~L~eGnY~kv~~~~~~~P~~~~~~fm~~L---------~~tiR~~ia~~iekA 136 (209)
..++.+++.++. |+|...+.++.+. ..+||..+ .+.+|.++...++||
T Consensus 20 ~lv~~Ave~D~a---g~y~eAl~lY~~A----ie~l~~alk~e~~~~~~k~~lr~K~~eYl~RA 76 (117)
T 2cpt_A 20 DLASKAAQEDKA---GNYEEALQLYQHA----VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRA 76 (117)
T ss_dssp HHHHHHHHHHHH---TCHHHHHHHHHHH----HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---cCHHHHHHHHHHH----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 345556666555 9999999988763 45677655 455666666666653
No 20
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=32.14 E-value=17 Score=26.80 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.5
Q ss_pred hhCCCCHHHHHHHHhhhCCCceee
Q 028424 148 MLLFTSDQELLEYVKEEHPEWEMK 171 (209)
Q Consensus 148 lL~f~~~~e~~~f~~~~~~gW~~~ 171 (209)
-|.|+|.+++++||+ .+||...
T Consensus 63 ~L~F~skE~AiayAe--k~G~~y~ 84 (108)
T 2lju_A 63 CLSFTTRELAIAYAV--AHKIDYT 84 (108)
T ss_dssp CEEESSHHHHHHHHH--HTTCEEE
T ss_pred eEecCCHHHHHHHHH--HcCCEEE
Confidence 478999999999974 6799874
No 21
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=31.91 E-value=1.2e+02 Score=20.66 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=39.2
Q ss_pred HHHhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhccC-CccHHHHHHhhCCCCHHHHHHHHh
Q 028424 93 SFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD-YLSIKDAGQMLLFTSDQELLEYVK 162 (209)
Q Consensus 93 ~L~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekAY~-sl~l~~a~~lL~f~~~~e~~~f~~ 162 (209)
.+......+.|+.....+. .. ++...|.+-|.-.-..=. .+|+.++|..+||.|..-.....+
T Consensus 29 ~~s~~~l~r~fk~~~G~s~--~~-----~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk 92 (108)
T 3mn2_A 29 GISSRGIFKAFQRSRGYSP--MA-----FAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYR 92 (108)
T ss_dssp TCCHHHHHHHHHHHTSSCH--HH-----HHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcCH--HH-----HHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 3455566677776544321 22 245566665543333322 399999999999998887766554
No 22
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=30.15 E-value=1.3e+02 Score=20.99 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=38.3
Q ss_pred HhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHh
Q 028424 95 MEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 162 (209)
Q Consensus 95 ~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~ 162 (209)
......+.|+.. ..+ +.- ++..+|.+.|.-.- ....+|+.++|..+||.+..-+....+
T Consensus 36 S~~~l~r~fk~~-G~s---~~~----~~~~~Rl~~A~~lL-~~~~~si~eIA~~~Gf~~~s~F~r~Fk 94 (120)
T 3mkl_A 36 SPSLLKKKLREE-ETS---YSQ----LLTECRMQRALQLI-VIHGFSIKRVAVSCGYHSVSYFIYVFR 94 (120)
T ss_dssp CHHHHHHHHHHT-TCC---HHH----HHHHHHHHHHHHHH-TSTTCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CCC---HHH----HHHHHHHHHHHHHH-HcCCCCHHHHHHHHCCCCHHHHHHHHH
Confidence 344556666654 332 222 35566666665443 356899999999999998887776654
No 23
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=29.89 E-value=89 Score=21.78 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhh-hCCCceee
Q 028424 114 YGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 171 (209)
Q Consensus 114 ~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~-~~~gW~~~ 171 (209)
..-++..+.+..|.+|+..+.. ..+++.++++.|+++ ..-+...++. ++.||...
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~--~~~s~~ela~~l~is-~stvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN--GPLPVTDLAEAIGME-QSAVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH--CCCCHHHHHHHHSSC-HHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHhCCHHHHHHHHHHHH--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 4556777778889999998876 679999999999997 6666555542 13588763
No 24
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=29.46 E-value=1.3e+02 Score=20.71 Aligned_cols=61 Identities=13% Similarity=-0.006 Sum_probs=38.8
Q ss_pred HHhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHh
Q 028424 94 FMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 162 (209)
Q Consensus 94 L~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~ 162 (209)
+......+.|+.....+. .. ++...|.+.|...-. ...+|+.++|..+||.|..-.....+
T Consensus 35 ~S~~~l~r~fk~~~G~s~--~~-----~~~~~Rl~~A~~lL~-~~~~~i~eIA~~~Gf~~~s~F~r~Fk 95 (113)
T 3oio_A 35 VSRRQLERLFKQYLGTVP--SK-----YYLELRLNRARQLLQ-QTSKSIVQIGLACGFSSGPHFSSTYR 95 (113)
T ss_dssp SCHHHHHHHHHHHTSSCH--HH-----HHHHHHHHHHHHHHH-HCCCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHCcCH--HH-----HHHHHHHHHHHHHHH-cCCCCHHHHHHHHCCCCHHHHHHHHH
Confidence 445556666666544321 22 245566665543332 36899999999999998887766554
No 25
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=28.31 E-value=1.4e+02 Score=20.33 Aligned_cols=62 Identities=8% Similarity=-0.093 Sum_probs=39.7
Q ss_pred HHHhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHh
Q 028424 93 SFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 162 (209)
Q Consensus 93 ~L~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~ 162 (209)
.+......+.|+.....+. ..+ +..+|.+.|.-.-. ...+|+.++|..+||.|..-.....+
T Consensus 32 ~~S~~~l~r~fk~~~G~s~--~~~-----~~~~Rl~~A~~lL~-~~~~si~~IA~~~Gf~~~s~F~r~Fk 93 (108)
T 3oou_A 32 HINAVYLGQLFQKEMGEHF--TDY-----LNRYRVNYAKEELL-QTKDNLTIIAGKSGYTDMAYFYRQFK 93 (108)
T ss_dssp TSCHHHHHHHHHHHHSSCH--HHH-----HHHHHHHHHHHHHH-HCCCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHCcCH--HHH-----HHHHHHHHHHHHHH-cCCCCHHHHHHHcCCCChHHHHHHHH
Confidence 3556666777776644321 222 45566665543222 35789999999999998887766553
No 26
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=27.68 E-value=1.1e+02 Score=21.04 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhh-hCCCceee
Q 028424 114 YGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 171 (209)
Q Consensus 114 ~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~-~~~gW~~~ 171 (209)
...++..|.+..|.+|+..+. -..++..++++.++++ ...+...++. .+.||...
T Consensus 16 ~~~~~~~l~~~~r~~IL~~L~--~~~~~~~ela~~l~is-~stvs~~L~~L~~~Glv~~ 71 (106)
T 1r1u_A 16 VTEIFKALGDYNRIRIMELLS--VSEASVGHISHQLNLS-QSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp HHHHHHHTCSHHHHHHHHHHH--HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEE
Confidence 455677777889999999886 3568999999999998 6666555542 24688763
No 27
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=27.65 E-value=93 Score=21.02 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHHHHHHHhc------cCCccHHHHHHhhCCCCHHHHHHHHh
Q 028424 126 RDEIAGCSEKA------YDYLSIKDAGQMLLFTSDQELLEYVK 162 (209)
Q Consensus 126 R~~ia~~iekA------Y~sl~l~~a~~lL~f~~~~e~~~f~~ 162 (209)
+.+|+..|... | ..++++++..||++ +.-+...++
T Consensus 6 ~~~IL~~I~~~i~~~~g~-~psv~EIa~~lgvS-~~TVrr~L~ 46 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGA-PVKTRDIADAAGLS-IYQVRLYLE 46 (77)
T ss_dssp HHHHHHHHHHHHHHHTTS-CEEHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCC-CcCHHHHHHHHCCC-HHHHHHHHH
Confidence 45566666544 5 49999999999995 777777665
No 28
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=27.41 E-value=1.2e+02 Score=21.68 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhh-hCCCceee
Q 028424 114 YGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 171 (209)
Q Consensus 114 ~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~-~~~gW~~~ 171 (209)
..-++..|.+..|.+|+..+.. ..++..++++.||++ ...+...++. .+.||...
T Consensus 36 ~~~~~kaL~~~~rl~IL~~L~~--~~~s~~ela~~lgis-~stvs~~L~~Le~~Glv~~ 91 (122)
T 1r1t_A 36 LAEFFAVLADPNRLRLLSLLAR--SELCVGDLAQAIGVS-ESAVSHQLRSLRNLRLVSY 91 (122)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEE
Confidence 4566777788889999998853 578999999999998 6666555542 24688874
No 29
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=27.38 E-value=1.4e+02 Score=20.07 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=38.5
Q ss_pred HHhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHh
Q 028424 94 FMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 162 (209)
Q Consensus 94 L~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~ 162 (209)
+......+.|+.....+. .. ++...|.+-|...-. ...+|+.++|..+||.|..-+....+
T Consensus 31 ~S~~~l~r~fk~~~g~s~--~~-----~~~~~Rl~~A~~lL~-~~~~si~~iA~~~Gf~~~s~F~r~Fk 91 (103)
T 3lsg_A 31 LSSGYLSIMFKKNFGIPF--QD-----YLLQKRMEKAKLLLL-TTELKNYEIAEQVGFEDVNYFITKFK 91 (103)
T ss_dssp CCHHHHHHHHHHHHSSCH--HH-----HHHHHHHHHHHHHHH-HCCCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHCcCH--HH-----HHHHHHHHHHHHHHH-CCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 445555666666544321 12 245566665543322 36899999999999998887766654
No 30
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=27.26 E-value=1.1e+02 Score=21.22 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=33.0
Q ss_pred chhhhHHHHHHHHHhcChHHHHHHhhcCCCcchHHHHHHH--------HHHHHHHHHHHHHhc
Q 028424 82 PCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLL--------AKTVRDEIAGCSEKA 136 (209)
Q Consensus 82 ~~I~~~~~leq~L~eGnY~kv~~~~~~~P~~~~~~fm~~L--------~~tiR~~ia~~iekA 136 (209)
..++.+++.++. |+|...+..+.+. ..+||..+ .+.+|.++...+.+|
T Consensus 17 ~lv~~Ave~D~~---g~y~eAl~~Y~~A----ie~l~~alk~e~~~~~k~~l~~K~~eYl~RA 72 (93)
T 1wfd_A 17 AVLKRAVELDAE---SRYQQALVCYQEG----IDMLLQVLKGTKESSKRCVLRTKISGYMDRA 72 (93)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHH----HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCHHHHHHHHHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345556666654 9999999988763 46677655 456777777777664
No 31
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=26.15 E-value=36 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=30.6
Q ss_pred cCCccHHHHHHhhCCCCHHHHHHHHhhhCCCceeeCCeEEEecC
Q 028424 137 YDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKA 180 (209)
Q Consensus 137 Y~sl~l~~a~~lL~f~~~~e~~~f~~~~~~gW~~~~~~i~f~~~ 180 (209)
...+|++.+++..+|++++++..-+ ||-...|+|.|...
T Consensus 22 ~~~~s~~el~k~t~l~~d~el~lAi-----GWLaREdKI~~~~~ 60 (77)
T 2l01_A 22 TEGLTQKQIKKATKLKADKDFFLGL-----GWLLREDKVVTSEV 60 (77)
T ss_dssp SSCEEHHHHHHHHTCSCHHHHHHHH-----HHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHH-----HHHhhcCceEEEee
Confidence 3579999999999996577776654 89888778777653
No 32
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=25.95 E-value=19 Score=26.48 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.3
Q ss_pred hhCCCCHHHHHHHHhhhCCCceee
Q 028424 148 MLLFTSDQELLEYVKEEHPEWEMK 171 (209)
Q Consensus 148 lL~f~~~~e~~~f~~~~~~gW~~~ 171 (209)
-|.|+|.+++++||+ ..||...
T Consensus 55 ~L~F~skE~AiayAe--k~G~~y~ 76 (106)
T 2jya_A 55 KLTFETQEQAEAYAQ--RKGIEYR 76 (106)
T ss_dssp EEEESSHHHHHHHHH--HHTCEEE
T ss_pred eEecCCHHHHHHHHH--HcCCEEE
Confidence 478999999999984 5799874
No 33
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=25.81 E-value=2e+02 Score=23.78 Aligned_cols=115 Identities=10% Similarity=-0.011 Sum_probs=70.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhccHhhh-------------cCchhhhHHHHHHHHHhcChHHHHHHhhcCC--CcchHH
Q 028424 52 GLNLLRLLVQNRIAEFHTELELLSSTAL-------------ENPCIKHAVELEQSFMEGAYNRVLSAKQNVP--NETYGY 116 (209)
Q Consensus 52 ~l~LL~LL~~n~i~efh~~Le~l~~~~~-------------~~~~I~~~~~leq~L~eGnY~kv~~~~~~~P--~~~~~~ 116 (209)
++.+|.-++.|++.....+|+.+-.-.. ....-..+.++-.++..|+..+++.....+- ......
T Consensus 166 a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l~~l~~~g~~~~~ 245 (343)
T 1jr3_D 166 ANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVI 245 (343)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHH
Confidence 4566666779999999999987643110 0111235678899999999999988655332 334567
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhhhCCCcee
Q 028424 117 FMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEM 170 (209)
Q Consensus 117 fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~~~~gW~~ 170 (209)
++..|...+|.=........ .. +.+.+++.+++. +.....+.+ ..++|+.
T Consensus 246 il~~l~~~~r~l~~~~~~~~-~g-~~~~i~~~l~i~-~~~~~~~~~-~~~~~s~ 295 (343)
T 1jr3_D 246 LLRTLQRELLLLVNLKRQSA-HT-PLRALFDKHRVW-QNRRGMMGE-ALNRLSQ 295 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCSS-SS-CHHHHHHHHTCC-SSHHHHHHH-HHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHcCCC-HHHHHHHHH-HHHcCCH
Confidence 78888888887544221111 12 677777766664 333333322 2345654
No 34
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=25.71 E-value=1.3e+02 Score=19.62 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=30.9
Q ss_pred HHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhh-hCCCcee
Q 028424 126 RDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEM 170 (209)
Q Consensus 126 R~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~-~~~gW~~ 170 (209)
|.+|+.++.+. ..++.+++++.++++ ...+...++. .+.|+..
T Consensus 2 r~~Il~~L~~~-~~~s~~eLa~~lgvs-~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNRH-NGGKTAEIAEALAVT-DYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHHS-CCCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 67788877643 579999999999997 6666555542 1347765
No 35
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=23.08 E-value=1.8e+02 Score=19.73 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=38.3
Q ss_pred HHhcChHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHh
Q 028424 94 FMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 162 (209)
Q Consensus 94 L~eGnY~kv~~~~~~~P~~~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~ 162 (209)
+......+.|+.....+. ..+ +...|.+.|...-. ...+|+.++|..+||.|..-.....+
T Consensus 32 ~S~~~l~r~fk~~~G~s~--~~~-----~~~~Rl~~A~~lL~-~~~~si~~IA~~~Gf~~~s~F~r~Fk 92 (107)
T 2k9s_A 32 LSPSRLSHLFRQQLGISV--LSW-----REDQRISQAKLLLS-TTRMPIATVGRNVGFDDQLYFSRVFK 92 (107)
T ss_dssp SCHHHHHHHHHHHHSSCH--HHH-----HHHHHHHHHHHHHH-HCCCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCcCH--HHH-----HHHHHHHHHHHHHH-cCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 445556666766544321 122 45566655543322 36799999999999998887765553
No 36
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=21.37 E-value=65 Score=22.52 Aligned_cols=54 Identities=7% Similarity=-0.090 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhh-hCCCcee
Q 028424 114 YGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEM 170 (209)
Q Consensus 114 ~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~-~~~gW~~ 170 (209)
..-++..|-+..|.+|+..+.. ..++..++++.|+++ ...+...++. .+.|+..
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~~--~~~s~~eLa~~lgis-~stvs~~L~~L~~~GlV~ 69 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLAQ--GERAVEAIATATGMN-LTTASANLQALKSGGLVE 69 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHTT--CCEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 4556667778889999988853 679999999999998 6666666542 2458875
No 37
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=20.97 E-value=97 Score=20.80 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhh-hCCCceee
Q 028424 113 TYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 171 (209)
Q Consensus 113 ~~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~-~~~gW~~~ 171 (209)
...-++..|-+..|.+|+..+.. ..++..+++..+|++ ...+...++. .+.|+...
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~ 68 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCMLHN--QELSVGELCAKLQLS-QSALSQHLAWLRRDGLVTT 68 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEE
Confidence 35667788888999999998865 789999999999998 6666555542 24587754
No 38
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=20.48 E-value=1.5e+02 Score=19.90 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHhhCCCCHHHHHHHHhh-hCCCceee
Q 028424 114 YGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 171 (209)
Q Consensus 114 ~~~fm~~L~~tiR~~ia~~iekAY~sl~l~~a~~lL~f~~~~e~~~f~~~-~~~gW~~~ 171 (209)
..-++..+.+..|.+|+..+ . ..++..++++.++++ ..-+...++. .+.|+...
T Consensus 21 ~~~~~~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is-~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 21 HKRYNYAVTNPVRRKILRML-D--KGRSEEEIMQTLSLS-KKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHHHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 44566777888999999998 3 569999999999998 5655555542 24588765
Done!