Query 028425
Match_columns 209
No_of_seqs 161 out of 300
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 18:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_R 60S ribosomal protein L 100.0 2.9E-90 1E-94 585.1 14.8 188 1-188 1-188 (189)
2 4a1a_O RPL19, 60S ribosomal pr 100.0 7.7E-88 2.6E-92 568.6 14.7 178 1-178 1-178 (185)
3 3iz5_T 60S ribosomal protein L 100.0 7.3E-87 2.5E-91 570.4 18.6 181 1-182 1-181 (209)
4 2zkr_p 60S ribosomal protein L 100.0 6.5E-86 2.2E-90 560.8 13.4 187 1-187 1-187 (196)
5 4a17_O RPL19, 60S ribosomal pr 100.0 7.7E-83 2.6E-87 538.0 17.1 165 1-165 1-165 (185)
6 1vq8_P 50S ribosomal protein L 100.0 2.3E-77 7.7E-82 491.2 13.7 149 1-149 1-149 (149)
7 3j21_Q PFEL19, 50S ribosomal p 100.0 4.1E-77 1.4E-81 490.0 15.0 146 1-146 1-146 (150)
8 3jyw_P 60S ribosomal protein L 100.0 3.3E-73 1.1E-77 476.9 9.5 156 2-157 1-156 (176)
9 1fme_A FSD-EY peptide; beta-BE 66.1 2.3 7.8E-05 25.7 1.2 21 126-146 6-26 (28)
10 2ab3_A ZNF29; zinc finger prot 21.8 37 0.0013 16.9 1.2 15 129-143 11-25 (29)
No 1
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=100.00 E-value=2.9e-90 Score=585.06 Aligned_cols=188 Identities=56% Similarity=0.913 Sum_probs=184.9
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 028425 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (209)
Q Consensus 1 M~~l~~QKRLAAsVL~cGk~kVWlDPne~~eIa~AnsR~~IRkLIKdGlIi~Kp~~~hSR~R~r~~~~ak~kGRh~G~Gk 80 (209)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (189)
T 3u5e_R 1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK 80 (189)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 028425 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dQae 160 (209)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++++|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (189)
T 3u5e_R 81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE 160 (189)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhcCCCCC
Q 028425 161 AKRAKNKASRERKIARREERLAQGPGGA 188 (209)
Q Consensus 161 A~r~k~k~~r~rr~~r~~~kk~~~~~~~ 188 (209)
|+|+|++++++++++++|+++++|+.++
T Consensus 161 a~r~k~k~~~~r~~~~~~~k~~~~~~~~ 188 (189)
T 3u5e_R 161 ARRLKNRAARDRRAQRVAEKRDALLKED 188 (189)
T ss_dssp HHHHHHHHHHHHHHHTTTSSTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988654
No 2
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O
Probab=100.00 E-value=7.7e-88 Score=568.60 Aligned_cols=178 Identities=67% Similarity=1.056 Sum_probs=145.8
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 028425 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (209)
Q Consensus 1 M~~l~~QKRLAAsVL~cGk~kVWlDPne~~eIa~AnsR~~IRkLIKdGlIi~Kp~~~hSR~R~r~~~~ak~kGRh~G~Gk 80 (209)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a1a_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 028425 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dQae 160 (209)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (185)
T 4a1a_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred cccchhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 028425 161 AKRAKNKASRERKIARRE 178 (209)
Q Consensus 161 A~r~k~k~~r~rr~~r~~ 178 (209)
|+|+|++++++++++++|
T Consensus 161 a~r~k~k~~r~~~~~~~~ 178 (185)
T 4a1a_O 161 ARRAKNTASRAKRNEKAQ 178 (185)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 999999999999999987
No 3
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=100.00 E-value=7.3e-87 Score=570.39 Aligned_cols=181 Identities=91% Similarity=1.310 Sum_probs=177.7
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 028425 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (209)
Q Consensus 1 M~~l~~QKRLAAsVL~cGk~kVWlDPne~~eIa~AnsR~~IRkLIKdGlIi~Kp~~~hSR~R~r~~~~ak~kGRh~G~Gk 80 (209)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+||++|++||||+||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~AnsRq~IRkLIkdGlIi~Kpv~~hSR~R~r~~~~ar~kGRh~G~Gk 80 (209)
T 3iz5_T 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGK 80 (209)
T ss_dssp CCCCHHHHHHHHHHHTSCTTTEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCHHHHHHHHHTTSSCCSCSSSS
T ss_pred CcchHHHHHHHHHHhCCCCCeeccChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 028425 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dQae 160 (209)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~KaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dqae 160 (209)
T 3iz5_T 81 RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
T ss_dssp SCSCTTTTCCSHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHTTCCCSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHh
Q 028425 161 AKRAKNKASRERKIARREERLA 182 (209)
Q Consensus 161 A~r~k~k~~r~rr~~r~~~kk~ 182 (209)
|+|+|+++++++++++ +++++
T Consensus 161 Arr~k~k~~r~rr~~r-~~~~~ 181 (209)
T 3iz5_T 161 AKRAKSKASRERKIAR-REERL 181 (209)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHh
Confidence 9999999999999999 44443
No 4
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.5e-86 Score=560.84 Aligned_cols=187 Identities=65% Similarity=1.030 Sum_probs=152.9
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 028425 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (209)
Q Consensus 1 M~~l~~QKRLAAsVL~cGk~kVWlDPne~~eIa~AnsR~~IRkLIKdGlIi~Kp~~~hSR~R~r~~~~ak~kGRh~G~Gk 80 (209)
|++|++|+||||+||+||+++||||||+++||++||||+|||+||+||+|+.+|++|||||||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (196)
T 2zkr_p 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK 80 (196)
T ss_dssp --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred CcchHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 028425 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dQae 160 (209)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|||++++++|+||+|
T Consensus 81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e 160 (196)
T 2zkr_p 81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160 (196)
T ss_dssp ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhcCCCC
Q 028425 161 AKRAKNKASRERKIARREERLAQGPGG 187 (209)
Q Consensus 161 A~r~k~k~~r~rr~~r~~~kk~~~~~~ 187 (209)
|+|++++++++++++++++++++++.+
T Consensus 161 a~r~k~k~~r~~r~~~~~~~~~~~~~~ 187 (196)
T 2zkr_p 161 ARRSKTKEARKRREERLQAKKEEIIKT 187 (196)
T ss_dssp HHHTTTHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999888753
No 5
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=100.00 E-value=7.7e-83 Score=537.96 Aligned_cols=165 Identities=65% Similarity=1.019 Sum_probs=162.1
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 028425 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (209)
Q Consensus 1 M~~l~~QKRLAAsVL~cGk~kVWlDPne~~eIa~AnsR~~IRkLIKdGlIi~Kp~~~hSR~R~r~~~~ak~kGRh~G~Gk 80 (209)
|++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a17_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 028425 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dQae 160 (209)
|+||+|||||+|++||+|||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae 160 (185)
T 4a17_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 028425 161 AKRAK 165 (209)
Q Consensus 161 A~r~k 165 (209)
|.-.-
T Consensus 161 a~~~~ 165 (185)
T 4a17_O 161 XXXXX 165 (185)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 97654
No 6
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=100.00 E-value=2.3e-77 Score=491.18 Aligned_cols=149 Identities=35% Similarity=0.578 Sum_probs=142.8
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 028425 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (209)
Q Consensus 1 M~~l~~QKRLAAsVL~cGk~kVWlDPne~~eIa~AnsR~~IRkLIKdGlIi~Kp~~~hSR~R~r~~~~ak~kGRh~G~Gk 80 (209)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (149)
T 1vq8_P 1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS 80 (149)
T ss_dssp -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHhhHH
Q 028425 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK 149 (209)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kaek 149 (209)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|+||||+.++|+
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~ 149 (149)
T 1vq8_P 81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA 149 (149)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999884
No 7
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.1e-77 Score=490.05 Aligned_cols=146 Identities=43% Similarity=0.819 Sum_probs=144.7
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 028425 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (209)
Q Consensus 1 M~~l~~QKRLAAsVL~cGk~kVWlDPne~~eIa~AnsR~~IRkLIKdGlIi~Kp~~~hSR~R~r~~~~ak~kGRh~G~Gk 80 (209)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+
T Consensus 1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (150)
T 3j21_Q 1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS 80 (150)
T ss_dssp CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred CcchHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHh
Q 028425 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146 (209)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~K 146 (209)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+|||+...
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~ 146 (150)
T 3j21_Q 81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHG 146 (150)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHS
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999864
No 8
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=3.3e-73 Score=476.87 Aligned_cols=156 Identities=58% Similarity=0.961 Sum_probs=152.2
Q ss_pred CcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCc
Q 028425 2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR 81 (209)
Q Consensus 2 ~~l~~QKRLAAsVL~cGk~kVWlDPne~~eIa~AnsR~~IRkLIKdGlIi~Kp~~~hSR~R~r~~~~ak~kGRh~G~GkR 81 (209)
++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+|
T Consensus 1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR 80 (176)
T 3jyw_P 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR 80 (176)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred CCcHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhH
Q 028425 82 KGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSD 157 (209)
Q Consensus 82 KGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~d 157 (209)
+||+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+++|++|||+.|+|+++.-.-+.
T Consensus 81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~ 156 (176)
T 3jyw_P 81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAA 156 (176)
T ss_dssp SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGG
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765443
No 9
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=66.07 E-value=2.3 Score=25.73 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.6
Q ss_pred hhcCCccccHHHHHHHHHHHh
Q 028425 126 KVKGNVFKNKRVLMESIHKSK 146 (209)
Q Consensus 126 kaKGn~Fknk~~L~e~I~k~K 146 (209)
+-||-.|+|-..|.++|++.|
T Consensus 6 kykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHCC
T ss_pred hhcccccccHHHHHHHHHHhc
Confidence 568999999999999998854
No 10
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=21.85 E-value=37 Score=16.90 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.7
Q ss_pred CCccccHHHHHHHHH
Q 028425 129 GNVFKNKRVLMESIH 143 (209)
Q Consensus 129 Gn~Fknk~~L~e~I~ 143 (209)
|..|.+...|..|+.
T Consensus 11 ~k~f~~~~~l~~H~~ 25 (29)
T 2ab3_A 11 GRSFNDRRKLNRHKK 25 (29)
T ss_dssp CEEESSHHHHHHHHG
T ss_pred cCccCCHHHHHHHHH
Confidence 678999999999863
Done!