Query 028426
Match_columns 209
No_of_seqs 160 out of 1208
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c8m_A Lipoate-protein ligase 100.0 7.7E-42 2.6E-46 293.1 15.5 182 1-204 49-246 (262)
2 1vqz_A Lipoate-protein ligase, 100.0 1.7E-40 5.7E-45 294.9 17.1 184 1-204 57-244 (341)
3 3a7r_A Lipoate-protein ligase 100.0 2.2E-40 7.5E-45 293.7 10.9 159 1-167 47-214 (337)
4 2e5a_A Lipoyltransferase 1; li 100.0 5.5E-40 1.9E-44 292.1 11.1 160 1-167 50-216 (347)
5 2p5i_A BH3822 protein; PFAM030 100.0 6.9E-38 2.3E-42 272.1 12.6 187 3-204 69-270 (288)
6 2p0l_A Lipoate-protein ligase 100.0 2.1E-35 7.1E-40 256.6 12.8 162 3-166 66-248 (288)
7 2qhs_A Lipoyltransferase; glob 100.0 3.4E-29 1.2E-33 212.1 14.5 155 2-167 70-228 (237)
8 1w66_A Lipoyltransferase; lipo 99.9 3.6E-21 1.2E-25 162.4 14.0 142 15-167 67-216 (232)
9 2dxu_A Biotin--[acetyl-COA-car 96.0 0.047 1.6E-06 45.2 10.1 72 20-98 37-119 (235)
10 3bfm_A Biotin protein ligase-l 94.9 0.04 1.4E-06 45.5 5.8 65 27-95 37-108 (235)
11 2eay_A Biotin [acetyl-COA-carb 94.0 0.16 5.3E-06 42.0 7.5 73 21-100 30-113 (233)
12 1bia_A BIRA bifunctional prote 94.0 0.13 4.6E-06 44.2 7.3 70 19-95 106-188 (321)
13 3rkx_A Biotin-[acetyl-COA-carb 93.0 2.1 7.1E-05 36.9 13.2 71 19-95 110-192 (323)
14 2ej9_A Putative biotin ligase; 89.2 1.5 5E-05 36.1 8.0 69 21-96 30-112 (237)
15 3rux_A BIRA bifunctional prote 88.4 1.1 3.9E-05 37.6 7.0 78 19-99 61-151 (270)
16 1xg8_A Hypothetical protein SA 30.0 60 0.002 23.5 3.9 49 149-203 28-76 (111)
17 2eo0_A Hypothetical protein ST 22.8 49 0.0017 25.1 2.5 27 3-29 11-37 (147)
18 3epu_A STM2138 virulence chape 22.7 46 0.0016 25.2 2.3 50 25-74 77-131 (144)
No 1
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=100.00 E-value=7.7e-42 Score=293.09 Aligned_cols=182 Identities=15% Similarity=0.260 Sum_probs=145.7
Q ss_pred CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCC---CCCchhHHHHHHHHHhHHhHhcCc---
Q 028426 1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP---GVQPFPRSIMSWSGLLYNQVFKGI--- 74 (209)
Q Consensus 1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~---~~~~~~~~i~~~L~~l~~~~~~gv--- 74 (209)
++++++.|+|+++|+++||+||||.|||||||||+|++|||++.|..... .|..+.+.|+++|+.+ |+
T Consensus 49 ~~q~~~~e~~~~~~~~~gi~vvrR~sGGgavyhd~G~l~ys~i~~~~~~~~~~~y~~l~~~ii~~l~~l------Gi~~~ 122 (262)
T 2c8m_A 49 YFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRIL------GLDAR 122 (262)
T ss_dssp TTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTTEEEEEEEEECSSCCHHHHHHHHHHHHHHHHHHT------TCCCE
T ss_pred CCCChhHHhHHHHHHhcCCcEEEECCCCceEEeCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHc------CCCcc
Confidence 46899999999999999999999999999999999999999999876421 4777899999999999 77
Q ss_pred -------cccccCcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCcccccccccccccccccc
Q 028426 75 -------ADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEY 146 (209)
Q Consensus 75 -------~~~~~~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~ 146 (209)
..+|.++|||+++||||+|+||++.+++++|||||+++.|++.|. +|+++++++.+++++|++++||||+++
T Consensus 123 ~~~~~~~~a~~~g~~dv~v~g~Ki~G~aqr~~~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~ 202 (262)
T 2c8m_A 123 PGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF 202 (262)
T ss_dssp ECCBCCTTSSSSBTTSEEETTEEEEEEEEEEETTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT
T ss_pred cccccCCcceECCcCcEEECCeEEEEeeeEEeCCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHh
Confidence 677778999999999999999999999999999999999999997 999999999999999999999999998
Q ss_pred CC--chHHHHHHHHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhccccc
Q 028426 147 LP--RTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEI 204 (209)
Q Consensus 147 l~--~~~~~e~l~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (209)
++ .+.+.+.|.++|.+.|+.+ ...+.||++||+.++++..|+
T Consensus 203 ~~~~~~~v~~~l~~~~~~~~~~~----------------~~~~~lt~~e~~~~~~l~~~k 246 (262)
T 2c8m_A 203 VDVSIDEVRNALIRGFSETLHID----------------FREDTITEKEESLARELFDKK 246 (262)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTCE----------------EEECCCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhCCC----------------ceecCCCHHHHHHHHHHHHhh
Confidence 62 4566666777777777653 145889999999999987754
No 2
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=100.00 E-value=1.7e-40 Score=294.90 Aligned_cols=184 Identities=23% Similarity=0.334 Sum_probs=155.9
Q ss_pred CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCC--CCCCchhHHHHHHHHHhHHhHhcCc-ccc
Q 028426 1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDV--PGVQPFPRSIMSWSGLLYNQVFKGI-ADF 77 (209)
Q Consensus 1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~--~~~~~~~~~i~~~L~~l~~~~~~gv-~~~ 77 (209)
++++++.|+|+++|+++||+||||.|||||||||+|++|||++.|.+.. ..|+.+.++|+++|+.+ |+ +.+
T Consensus 57 ~~q~~~~ev~~~~~~~~gi~vvRR~sGGgaVyHd~G~l~ys~i~~~~~~~~~~y~~l~~~ii~aL~~l------Gi~a~~ 130 (341)
T 1vqz_A 57 RHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAFDFKSFSTPVINTLAQL------GVKAEF 130 (341)
T ss_dssp TTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEECTTEEEEEEEEECCTTCCCSHHHHHHHHHHHHHHT------TCCEEE
T ss_pred CCCChhhhhCHHHHHHcCCcEEEECCCCCeEEECCCceEEEEEEcCcccCCccHHHHHHHHHHHHHHc------CCeEEE
Confidence 4689999999999999999999999999999999999999999987642 14778899999999999 88 445
Q ss_pred ccCcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCccccccccccccccccccCCchHHHHHH
Q 028426 78 QLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKT 156 (209)
Q Consensus 78 ~~~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l 156 (209)
. ++|||+++||||||+||++.+++++|||||++++|++.|. +|+++++++.+++++|++++||||+++++.+..++++
T Consensus 131 ~-gr~Di~v~grKIsG~Aqr~~~~~~lhhgtllvd~Dl~~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v 209 (341)
T 1vqz_A 131 T-GRNDLEIDGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKF 209 (341)
T ss_dssp E-TTTEEEETTEEEEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHH
T ss_pred C-CCCCEEEeCEEEEEEEEEEECCEEEEEEEEEecCCHHHHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHH
Confidence 4 7999999999999999999999999999999999999997 9999999999999999999999999998754555555
Q ss_pred HHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhccccc
Q 028426 157 TEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEI 204 (209)
Q Consensus 157 ~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (209)
+++|.+.|.-.. +.. ..|.||+++|+.++++..|+
T Consensus 210 ~~~l~~~f~~~~----~~~---------~~~~lt~~e~~~i~~l~~~k 244 (341)
T 1vqz_A 210 RDLLLEYMKKEY----PEM---------TEYVFSEEELAEINRIKDTK 244 (341)
T ss_dssp HHHHHHHHHHHC----TTC---------EECCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc----CCC---------CCCCCCHHHHHHHHHHHHHh
Confidence 555555443210 000 12789999999999987654
No 3
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=100.00 E-value=2.2e-40 Score=293.66 Aligned_cols=159 Identities=23% Similarity=0.315 Sum_probs=143.6
Q ss_pred CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCCCCchhHHHHHHHHHhHHhHhcCc-ccccc
Q 028426 1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGI-ADFQL 79 (209)
Q Consensus 1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~~~~~~~~i~~~L~~l~~~~~~gv-~~~~~ 79 (209)
++++++.|+|+++|+++||+||||.|||||||||+|++|||++.|.+. .+|+.+.++|+++|+.+ |+ +.+.
T Consensus 47 ~~q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHd~G~l~ys~i~~~~~-~~y~~l~~~ii~~L~~l------Gi~a~~~- 118 (337)
T 3a7r_A 47 RAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPE-YDKTISTSIVLNALNAL------GVSAEAS- 118 (337)
T ss_dssp TTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTTEEEEEEEEETTT-CCHHHHHHHHHHHHHHT------TCCEEEE-
T ss_pred CCCChhHhhCHHHHHHcCCeEEEEcCCCccEEECCCcEEEEEEECCcc-cCHHHHHHHHHHHHHHc------CCeEEEC-
Confidence 468999999999999999999999999999999999999999999876 46888999999999999 88 4555
Q ss_pred CcCcEEe---CC-eEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCccccccccccccccccccCC---chH
Q 028426 80 RENDYVF---GN-RKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEYLP---RTD 151 (209)
Q Consensus 80 ~~~Di~v---~g-rKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l~---~~~ 151 (209)
++|||++ +| |||||+||++.+++++|||||++++|++.|. +|+++++++.+|+++|++++||||+++++ .+.
T Consensus 119 g~~di~v~~~~g~rKIsG~Aqr~~~~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~ 198 (337)
T 3a7r_A 119 GRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQ 198 (337)
T ss_dssp TTTEEEECCTTSCEEEEEEEEEECSSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHH
T ss_pred CCCcEEEEeCCCceEEEEEEEEEECCEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHH
Confidence 7999999 89 9999999999999999999999999999997 99999999999999999999999999875 456
Q ss_pred HHHHHHHHHHHHcccC
Q 028426 152 FIEKTTEAVETYFSVK 167 (209)
Q Consensus 152 ~~e~l~~al~~~f~~~ 167 (209)
+.+.|.++|.+.|+.+
T Consensus 199 v~~~l~~~f~~~~~~~ 214 (337)
T 3a7r_A 199 VCEAITEAFFAHYGER 214 (337)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6666777777777653
No 4
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=100.00 E-value=5.5e-40 Score=292.14 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=143.7
Q ss_pred CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCCCCchhHHHHHHHHHhHHhHhcC--ccccc
Q 028426 1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKG--IADFQ 78 (209)
Q Consensus 1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~~~~~~~~i~~~L~~l~~~~~~g--v~~~~ 78 (209)
++++++.|+|+++|+++||+||||.|||||||||+|++|||++.|.+. .+|..++++|+++|+.+ | +...+
T Consensus 50 ~~q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHd~G~l~ys~i~~~~~-~~~~~~~~~ii~~L~~l------G~~i~a~~ 122 (347)
T 2e5a_A 50 RHQNPWQECNLNLMREEGVKLARRRSGGGTVYHDMGNINLTFFTTKKK-YDRMENLKLVVRALKAV------HPHLDVQA 122 (347)
T ss_dssp TTCCHHHHSCHHHHHTTTCEEEECSSCSCCEEECTTEEEEEEEECGGG-CCHHHHHHHHHHHHHHH------STTCCEEE
T ss_pred CCCCchhhhCHHHHHHCCCeEEEECCCCCcEEECCCcEEEEEEecccc-CCHHHHHHHHHHHHHHh------CCceEEEE
Confidence 468999999999999999999999999999999999999999998765 35777899999999999 7 75556
Q ss_pred cCcCcEEeCC-eEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCccccccccccccccccccCC---chHHH
Q 028426 79 LRENDYVFGN-RKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEYLP---RTDFI 153 (209)
Q Consensus 79 ~~~~Di~v~g-rKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l~---~~~~~ 153 (209)
.++|||+++| |||||+||++.+++++|||||++++|++.|. +|+++++++.+|+++|++++|+||+++++ .+.+.
T Consensus 123 ~g~~di~v~g~~KIsG~Aq~~~~~~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~ 202 (347)
T 2e5a_A 123 TKRFDLLLDGQFKISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVI 202 (347)
T ss_dssp CTTSCEEETTTEEEECEEEEECSSCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHH
T ss_pred CCCCcEEECCCcEEEEEeEEeeCCeEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHH
Confidence 6899999998 9999999999999999999999999999997 99999999999999999999999998864 46677
Q ss_pred HHHHHHHHHHcccC
Q 028426 154 EKTTEAVETYFSVK 167 (209)
Q Consensus 154 e~l~~al~~~f~~~ 167 (209)
+.|.++|.+.|+.+
T Consensus 203 ~~l~~~f~~~~~~~ 216 (347)
T 2e5a_A 203 NAVATEYATSHQID 216 (347)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 77777777777654
No 5
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=100.00 E-value=6.9e-38 Score=272.14 Aligned_cols=187 Identities=17% Similarity=0.116 Sum_probs=150.8
Q ss_pred CChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCC----CCCchhHHHHHHHHHhHHhH-hcCc-cc
Q 028426 3 RKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP----GVQPFPRSIMSWSGLLYNQV-FKGI-AD 76 (209)
Q Consensus 3 ~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~----~~~~~~~~i~~~L~~l~~~~-~~gv-~~ 76 (209)
++|+.|+|+++|+++||+||||.|||||||||+|++|||++.|.+... .|+.+.++|+++|+.+|..+ +..+ ++
T Consensus 69 q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHdpG~l~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~lGi~a~~~~~~~~ 148 (288)
T 2p5i_A 69 RLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGYELMYELICSMFQDHREQIEAREIVGS 148 (288)
T ss_dssp TSTTHHHHHHHHHHTTCEEEEESSCCCCEEECTTEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC---CCCEECCCTTS
T ss_pred CCccHhhhHHHHHHcCCeEEEEcCCCceEEECCCcEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEeccccC
Confidence 688999999999999999999999999999999999999999875322 36678889999999884321 1011 35
Q ss_pred cccCcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeecccccc--------cc-ccccccCCCccccccccccccccccccC
Q 028426 77 FQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGN--------MA-FLKQPARAPEYRMERGHTEFICRMNEYL 147 (209)
Q Consensus 77 ~~~~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~--------~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l 147 (209)
||.++|||+++||||+|+||++.+++++|||||+++.|++. +. +|+++++++.++++ .+++||||++++
T Consensus 149 ~c~g~~dl~v~grKI~G~Aqr~~~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi--~~~~VtsL~~~l 226 (288)
T 2p5i_A 149 YCPGSYDLSIDGKKFAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRI--KPETMASLSELL 226 (288)
T ss_dssp SSCCTTCEEETTEEEEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCC--CGGGBCCHHHHH
T ss_pred CCCCCccEEECCEEEEEEEEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCcccccccccc--chhhceeHHHHc
Confidence 68889999999999999999999999999999999999988 44 67888888888887 478999999988
Q ss_pred CchHHHHHHHHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhccccc
Q 028426 148 PRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEI 204 (209)
Q Consensus 148 ~~~~~~e~l~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (209)
+.+..+++++++|.+.|.--.. ++ ..+.||++||+.++++...+
T Consensus 227 ~~~~~~~~v~~~l~~~f~~~~~---~~----------~~~~lt~~e~~~~~~~~~~~ 270 (288)
T 2p5i_A 227 GQPHNVSDVLLKALMTLQQHGA---SL----------LTESLSADEWLLYEQHFARI 270 (288)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTC---CC----------EECCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCC---Cc----------eecCCCHHHHHHHHHHHHHH
Confidence 7666777777777777752100 11 45899999999998876543
No 6
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=100.00 E-value=2.1e-35 Score=256.60 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=132.5
Q ss_pred CChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCC-CC-C----CCCchhHHHHHHHHHhHHhH-hcCc-
Q 028426 3 RKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKD-DV-P----GVQPFPRSIMSWSGLLYNQV-FKGI- 74 (209)
Q Consensus 3 ~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~-~~-~----~~~~~~~~i~~~L~~l~~~~-~~gv- 74 (209)
++|+.|+|+++|+++||+||||.|||||||||+|++|||+++|.+ .. . .|+.+.++|+++|+.+|..+ ...+
T Consensus 66 q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHdpG~l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~lGi~a~~~~~~ 145 (288)
T 2p0l_A 66 ELPHLELAKKEIISRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVE 145 (288)
T ss_dssp GCTTHHHHHHHHHTTTCEEEECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCT
T ss_pred CCcchhhhHHHHHHCCCEEEEEcCCCCeEEECCCcEEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHHcCCcEEEcccc
Confidence 789999999999999999999999999999999999999999876 32 1 36678888999998883221 1011
Q ss_pred cccccCcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeeccccccc--------c-ccccccCCCccccccccccccccccc
Q 028426 75 ADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNM--------A-FLKQPARAPEYRMERGHTEFICRMNE 145 (209)
Q Consensus 75 ~~~~~~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~--------~-~L~~p~~k~~~k~v~s~~~~vt~L~e 145 (209)
++||.++|||+++||||+|+||++.+++++|||||+++.|++.| . +|+++++++.++++. +++||||++
T Consensus 146 ~~~c~g~~Dl~v~grKI~G~Aqr~~~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~--~~~VtsL~~ 223 (288)
T 2p0l_A 146 TSYCPGKFDLSINGKKFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVD--PEIMANLSD 223 (288)
T ss_dssp TSSSCCTTCEEETTEEEEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCC--TTSBCCHHH
T ss_pred CCCCCCCccEEECCEEEEEEeEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccc--hhheeeHHH
Confidence 35788999999999999999999999999999999999999884 3 467777888888773 789999999
Q ss_pred cCCc----hHHHHHHHHHHHHHccc
Q 028426 146 YLPR----TDFIEKTTEAVETYFSV 166 (209)
Q Consensus 146 ~l~~----~~~~e~l~~al~~~f~~ 166 (209)
+++. +.+.+.|.++|.+.|+.
T Consensus 224 ~l~~~~~~~~v~~~l~~~f~~~~~~ 248 (288)
T 2p0l_A 224 LLDCPMTVEDVIDRMLISLKQVGFN 248 (288)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHTCC
T ss_pred HcCCCCCHHHHHHHHHHHHHHhcCC
Confidence 8764 45566666666666665
No 7
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=99.96 E-value=3.4e-29 Score=212.12 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=119.5
Q ss_pred CCChhhh-cchhhhhhCCCCEEEcccCCceeEecCCce-EEEEEEeCCCCC-CCCchhHHHHHHHHHhHHhHhcCc-ccc
Q 028426 2 LRKPSEL-LEIGSVLRDQVPVMKRFTGGGTVVVDKGTV-FVTLICNKDDVP-GVQPFPRSIMSWSGLLYNQVFKGI-ADF 77 (209)
Q Consensus 2 ~~~~~~e-vnld~~~~~gI~vvRR~sGGGaVyhD~g~l-~~Sli~~~~~~~-~~~~~~~~i~~~L~~l~~~~~~gv-~~~ 77 (209)
.++++++ +|+++|+++||+||||.|||||||||+|++ +|+++.+..... .|+.+.+.|+++|+.+ |+ +.+
T Consensus 70 ~q~~~~~~~~~~~l~~~gi~vvrr~rGGgavyH~pGqlv~Y~i~~~~~~~~~~~~~l~~~ii~~L~~l------Gi~a~~ 143 (237)
T 2qhs_A 70 KATGENLLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVGREVRRFLRQIEEAIVRVAAGY------GISAYP 143 (237)
T ss_dssp TCCGGGBSSCHHHHHHTTCEEEECCSSSSEEEECTTEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHT------TCCCBC
T ss_pred CCCchhcccCHHHHHhcCCeEEEEcCCCEEEEECCCCEEEEEEEECCcCHHHHHHHHHHHHHHHHHHc------CCcEEE
Confidence 5788886 899999999999999999999999999997 677765543111 2445778889999998 88 677
Q ss_pred ccCcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccCCchHHHHHHH
Q 028426 78 QLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTT 157 (209)
Q Consensus 78 ~~~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l~ 157 (209)
+.+++||+++||||+|+||++.++.++||+||+++.|++.+..+. +.++.++.+.|+++++. ..++.+++.+.|.
T Consensus 144 ~~g~~dv~v~grKIag~g~~~~~~~~~hg~aLnv~~dl~~f~~i~--p~g~~~~~vtSl~~~l~---~~~~~~ev~~~l~ 218 (237)
T 2qhs_A 144 TPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIV--PCGLKGKGVTSLEKLLG---RKVPMEEAKARVV 218 (237)
T ss_dssp CSSSSSEEETTEEEEEEEEEEETTEEEEEEEEESSCCGGGGGGBC--CCSSCCSEECCHHHHHT---SCCCHHHHHHHHH
T ss_pred eCCCCCEEECCcEEEEEeEEeeCCeEEEeEEEecccChHHhcCcC--cCccCCCcEEeHHHhhC---CCCCHHHHHHHHH
Confidence 668999999999999999999999999999999999998876222 24455555555444322 1233567777777
Q ss_pred HHHHHHcccC
Q 028426 158 EAVETYFSVK 167 (209)
Q Consensus 158 ~al~~~f~~~ 167 (209)
++|.+.|+.+
T Consensus 219 ~~f~~~~~~~ 228 (237)
T 2qhs_A 219 AAFAEVFGLR 228 (237)
T ss_dssp HHHHHHHTCE
T ss_pred HHHHHHhCCc
Confidence 7777777754
No 8
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=99.86 E-value=3.6e-21 Score=162.42 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=103.5
Q ss_pred hhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCC---C-CchhHHHHHHHHHhHHhHhcCc-cccccCcCcEEeC--
Q 028426 15 LRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPG---V-QPFPRSIMSWSGLLYNQVFKGI-ADFQLRENDYVFG-- 87 (209)
Q Consensus 15 ~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~---~-~~~~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~-- 87 (209)
..+||+|+||.+|||++|||||++++.+|++.....+ | +.+.++++++|+++ |+ +.+..+++|++++
T Consensus 67 ~~~gi~Vvr~~rGG~~tYHgPGQlv~Y~Il~l~~~~~v~~~v~~le~~vI~~L~~~------Gi~a~~~~g~~gV~v~~~ 140 (232)
T 1w66_A 67 PIDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQVCADL------GLHAGRVDGRSGVWLPGR 140 (232)
T ss_dssp CTTCCCCEECSSSSSEEEECTTEEEEEEECBBCSSCCHHHHHHHHHHHHHHHHHHT------TCCCEEETTEEEEEECSS
T ss_pred cccCCeEEEecCCCceEEECCCCeEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHc------CCCeEecCCCCeEEecCC
Confidence 3579999999999999999999999999987443223 2 44588899999999 88 4444579999999
Q ss_pred -CeEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccCCchHHHHHHHHHHHHHccc
Q 028426 88 -NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSV 166 (209)
Q Consensus 88 -grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l~~al~~~f~~ 166 (209)
||||||++++..++..+|+.+|.++.|++. ++++.+.++.++++.|+++.+ ...++.+++.+.|.++|.+.|+.
T Consensus 141 ~~rKIaaig~r~~~~vt~HG~aLNv~~dL~~--f~~I~pcgi~~k~vtSl~~~l---g~~~~~~ev~~~l~~~f~~~~~~ 215 (232)
T 1w66_A 141 PARKVAAIGVRVSRATTLHGFALNCDCDLAA--FTAIVPCGISDAAVTSLSAEL---GRTVTVDEVRATVAAAVCAALDG 215 (232)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEEESSCCCGG--GGGSCGGGCSSSEECCHHHHH---TSCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeeeeeCCEEEcceEEecCcChHH--hcCccccccCCCceeeeHHHh---CCCCCHHHHHHHHHHHHHHHhCc
Confidence 999999999999888885547766666443 444444677777665554321 11123456677777777777765
Q ss_pred C
Q 028426 167 K 167 (209)
Q Consensus 167 ~ 167 (209)
.
T Consensus 216 ~ 216 (232)
T 1w66_A 216 V 216 (232)
T ss_dssp C
T ss_pred c
Confidence 4
No 9
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=96.02 E-value=0.047 Score=45.25 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=44.5
Q ss_pred CEEEcccCCc----eeEec-CCceEEEEEEeCCCCCC-CCc----hhHHHHHHHHHhHHhHhcCc-cccccCcCcEEeCC
Q 028426 20 PVMKRFTGGG----TVVVD-KGTVFVTLICNKDDVPG-VQP----FPRSIMSWSGLLYNQVFKGI-ADFQLRENDYVFGN 88 (209)
Q Consensus 20 ~vvRR~sGGG----aVyhD-~g~l~~Sli~~~~~~~~-~~~----~~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~g 88 (209)
-+..+.|.|. -.++. +|+|.+|++++.+..+. ... ..-.++++|+++ |+ ...- =+|||.++|
T Consensus 37 v~A~~QtaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~~l~l~~alAv~~al~~~------~~~~~iK-WPNDi~~~g 109 (235)
T 2dxu_A 37 IVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF------SIDGRIK-WPNDVLVNY 109 (235)
T ss_dssp EEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHHHHHHHHHHHT------TCCCEEE-TTTEEEETT
T ss_pred EEECccccCcCCCcCcccCCCCCeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHh------CCCeeee-CCCEEEECC
Confidence 3667888885 56666 58999999986543221 111 122334445544 43 1222 279999999
Q ss_pred eEeeeeeeEE
Q 028426 89 RKFGGNAQSI 98 (209)
Q Consensus 89 rKIsG~Aq~~ 98 (209)
||++|.=--.
T Consensus 110 kKl~GIL~E~ 119 (235)
T 2dxu_A 110 KKIAGVLVEG 119 (235)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEee
Confidence 9999974443
No 10
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=94.90 E-value=0.04 Score=45.48 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=36.5
Q ss_pred CCceeEecCC-ceEEEEEEeCCCCCC-CCc----hhHHHHHHHHHhHHhHhcCc-cccccCcCcEEeCCeEeeeee
Q 028426 27 GGGTVVVDKG-TVFVTLICNKDDVPG-VQP----FPRSIMSWSGLLYNQVFKGI-ADFQLRENDYVFGNRKFGGNA 95 (209)
Q Consensus 27 GGGaVyhD~g-~l~~Sli~~~~~~~~-~~~----~~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~grKIsG~A 95 (209)
.|-.|+.++| +|.+|++++....+. ... ..-.++++|++++.. .. .... =+|||.++|||++|.=
T Consensus 37 ~g~vv~A~~g~~L~~S~~l~~~~~~~~~~~lsl~~alAv~~aL~~~~~~---~~~~~iK-WPNDI~~~gkKl~GIL 108 (235)
T 3bfm_A 37 AGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCGVGFQNALGALAPP---EVAVHLD-WNGALRINGARCGRLR 108 (235)
T ss_dssp TTEEEEEECSSEEEEEEEECCSSCHHHHTTHHHHHHHHHHHHHHHHSCT---TCCEEEC-TTSEEEETTEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEec-CCCeEEECCeEEEEEE
Confidence 3445566776 899999987543211 111 123345555555210 00 0111 2699999999999973
No 11
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=94.03 E-value=0.16 Score=41.95 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=40.1
Q ss_pred EEEcccCCc----eeEec-CCceEEEEEEeCCCCCCC-Cch----hHHHHHHHHHhHHhHhcCc-cccccCcCcEEeCCe
Q 028426 21 VMKRFTGGG----TVVVD-KGTVFVTLICNKDDVPGV-QPF----PRSIMSWSGLLYNQVFKGI-ADFQLRENDYVFGNR 89 (209)
Q Consensus 21 vvRR~sGGG----aVyhD-~g~l~~Sli~~~~~~~~~-~~~----~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~gr 89 (209)
+..+.|.|. -.++. +|++.+|++++.. .+.. ..+ .-.++++|+.++ |+ ...- =+|||.++||
T Consensus 30 ~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~-~~~~~~~lsl~~~lAv~~al~~~~-----~~~~~iK-WPNDI~~~gk 102 (233)
T 2eay_A 30 VADRQTKGRGRLGRKWLSQEGGLYFSFLLNPK-EFENLLQLPLVLGLSVSEALEEIT-----EIPFSLK-WPNDVYFQEK 102 (233)
T ss_dssp EESCBCC------------CCEEEEEEEECTT-TCCCTTHHHHHHHHHHHHHHHHHH-----CCCCEEE-TTTEEEETTE
T ss_pred EECCcCCCCCCCCCeeeCCCCCcEEEEEEcCC-CHHHHHHHHHHHHHHHHHHHHHhc-----CCCccEe-CcceEEECCe
Confidence 566778774 35555 6899999998654 2221 111 223344555431 33 1222 2799999999
Q ss_pred EeeeeeeEEeC
Q 028426 90 KFGGNAQSITK 100 (209)
Q Consensus 90 KIsG~Aq~~~~ 100 (209)
||+|.=--...
T Consensus 103 Kl~GIL~E~~~ 113 (233)
T 2eay_A 103 KVSGVLCELSK 113 (233)
T ss_dssp EEEEEEEEEET
T ss_pred EEEEEEEEeec
Confidence 99998544433
No 12
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=94.01 E-value=0.13 Score=44.24 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=39.6
Q ss_pred CCEEEcccCCc----eeEec-CC-ceEEEEEEeCCCCCCCCc-----hhHHHHHHHHHhHHhHhcCcc--ccccCcCcEE
Q 028426 19 VPVMKRFTGGG----TVVVD-KG-TVFVTLICNKDDVPGVQP-----FPRSIMSWSGLLYNQVFKGIA--DFQLRENDYV 85 (209)
Q Consensus 19 I~vvRR~sGGG----aVyhD-~g-~l~~Sli~~~~~~~~~~~-----~~~~i~~~L~~l~~~~~~gv~--~~~~~~~Di~ 85 (209)
+-+..+.|.|. -.++. +| +|.+|++++....+.... ..-.++++|+.+ |.. ..- =+|||.
T Consensus 106 vv~A~~QtaGRGR~gr~W~Sp~g~~l~~S~~l~~~~~~~~~~~l~l~~~~av~~al~~~------~~~~~~iK-WPNDi~ 178 (321)
T 1bia_A 106 ACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKL------GADKVRVK-WPNDLY 178 (321)
T ss_dssp EEEESCBTTC---------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHHHHHHHHHT------TCTTCEEE-TTTEEE
T ss_pred EEEECccCCCCCCCCCcccCCCCCCEEEEEEEccCCChHHHhhHHHHHHHHHHHHHHHh------CCCCccEe-Ccceee
Confidence 34566778875 35666 57 799999987543222111 122344455555 331 122 269999
Q ss_pred eCCeEeeeee
Q 028426 86 FGNRKFGGNA 95 (209)
Q Consensus 86 v~grKIsG~A 95 (209)
++|||++|.=
T Consensus 179 ~~g~Kl~GIL 188 (321)
T 1bia_A 179 LQDRKLAGIL 188 (321)
T ss_dssp ETTEEEEEEE
T ss_pred ECCeeEEEEE
Confidence 9999999973
No 13
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=92.99 E-value=2.1 Score=36.87 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=36.9
Q ss_pred CCEEEcccCCc----eeEec-CC-ceEEEEEEeCCCCCCC-Cchh----HHHHHHHHHhHHhHhcCc-cccccCcCcEEe
Q 028426 19 VPVMKRFTGGG----TVVVD-KG-TVFVTLICNKDDVPGV-QPFP----RSIMSWSGLLYNQVFKGI-ADFQLRENDYVF 86 (209)
Q Consensus 19 I~vvRR~sGGG----aVyhD-~g-~l~~Sli~~~~~~~~~-~~~~----~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v 86 (209)
+-+..+.|.|. -.++. +| +|.+|++++....+.. ..+. -.++++|+.++ |+ ...- =+|||.+
T Consensus 110 vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~l~p~~~~~~~~~lsl~~avAv~~al~~~~-----~~~~~iK-WPNDI~~ 183 (323)
T 3rkx_A 110 FILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFS-----QDEVKVK-WPNDIYI 183 (323)
T ss_dssp EEEEEEEC------------CTTCEEEEEEEECCCCCTTSGGGHHHHHHHHHHHHHHTTC-----SSCEEEE-TTTEEEE
T ss_pred EEEECcccCCCCCCCCeeeCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHhc-----CCceEEe-CCCeEEE
Confidence 34677788873 35555 57 8999999875432221 1111 22333444331 22 1222 2699999
Q ss_pred CCeEeeeee
Q 028426 87 GNRKFGGNA 95 (209)
Q Consensus 87 ~grKIsG~A 95 (209)
+|||++|.=
T Consensus 184 ~gkKl~GIL 192 (323)
T 3rkx_A 184 DNGKVCGFL 192 (323)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999999973
No 14
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=89.15 E-value=1.5 Score=36.07 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred EEEcccCCc----eeEec-CCceEEEEEEeCCCCCCCCchh----HHHHHHHHHhHHhHhcCc-cccccCcCcEEeCC--
Q 028426 21 VMKRFTGGG----TVVVD-KGTVFVTLICNKDDVPGVQPFP----RSIMSWSGLLYNQVFKGI-ADFQLRENDYVFGN-- 88 (209)
Q Consensus 21 vvRR~sGGG----aVyhD-~g~l~~Sli~~~~~~~~~~~~~----~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~g-- 88 (209)
+..+.|.|. -.++. +|+|.+|++++....+. ..+. -.++++|+++ .|+ ...- =+|||.++|
T Consensus 30 ~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~-~~l~l~~~lAv~~al~~~-----~~~~~~iK-WPNDi~~~g~~ 102 (237)
T 2ej9_A 30 LADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKLYNP-KVINLLVPICIIEVLKNY-----VDKELGLK-FPNDIMVKVND 102 (237)
T ss_dssp EESCBSSCBCGGGCBCCCCTTSEEEEEEEETTSSCH-HHHHHHHHHHHHHHHTTT-----CCSCEEEE-TTTEEEEEETT
T ss_pred EECccCCCCCCCCCeeeCCCCCeEEEeEEccccCCH-HHHHHHHHHHHHHHHHHh-----hCCCccee-CCCEEEECCCc
Confidence 567778774 36665 68999999997522221 1111 1111112111 121 1111 269999999
Q ss_pred --eEeeeeee
Q 028426 89 --RKFGGNAQ 96 (209)
Q Consensus 89 --rKIsG~Aq 96 (209)
|||+|.=-
T Consensus 103 ~~kKl~GIL~ 112 (237)
T 2ej9_A 103 NYKKLGGILT 112 (237)
T ss_dssp EEEEEEEEEE
T ss_pred CccEeeEEEE
Confidence 99999744
No 15
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=88.43 E-value=1.1 Score=37.57 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=42.4
Q ss_pred CCEEEcccCCc----eeEec-CC-ceEEEEEEeCCCCC-CCC-chh----HHHHHHHHHhHHhHhcCc-cccccCcCcEE
Q 028426 19 VPVMKRFTGGG----TVVVD-KG-TVFVTLICNKDDVP-GVQ-PFP----RSIMSWSGLLYNQVFKGI-ADFQLRENDYV 85 (209)
Q Consensus 19 I~vvRR~sGGG----aVyhD-~g-~l~~Sli~~~~~~~-~~~-~~~----~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~ 85 (209)
+-+..+.|.|. -.++. +| +|.+|++++.+..+ ... .+. -.++++|+.+. . +.|+ .... =+|||.
T Consensus 61 vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~l~~~~~~~~~~~~lsl~~~lAv~~aL~~~~-~-~~~~~~~iK-WPNDI~ 137 (270)
T 3rux_A 61 VLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLI-A-VPPAETGLK-WPNDVL 137 (270)
T ss_dssp EEEEEEESSEECGGGCEECCCTTSEEEEEEEEECTTSCGGGTHHHHHHHHHHHHHHHGGGS-S-SCCSSCEEE-TTTEEE
T ss_pred EEEECccCCCCCCCCCeeeCCCCCCeEEEEEEccCCCChHHHHHHHHHHHHHHHHHHHHhc-c-cCCCceEEE-CCCeEE
Confidence 34677888873 46665 58 89999999865322 111 111 11222332110 0 0122 1122 269999
Q ss_pred eCCeEeeeeeeEEe
Q 028426 86 FGNRKFGGNAQSIT 99 (209)
Q Consensus 86 v~grKIsG~Aq~~~ 99 (209)
++||||+|.=--..
T Consensus 138 ~~gkKl~GIL~E~~ 151 (270)
T 3rux_A 138 ARGGKLAGILAEVA 151 (270)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCEEEEEEEEEee
Confidence 99999999744433
No 16
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=30.05 E-value=60 Score=23.51 Aligned_cols=49 Identities=6% Similarity=0.069 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhcccc
Q 028426 149 RTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPE 203 (209)
Q Consensus 149 ~~~~~e~l~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 203 (209)
..++.+-|..+|.+-|...+.+...+| + ...+-.||+++.+.++++++|
T Consensus 28 SkeTyEWLqAal~RKyp~~~f~~~YID-I-----~~~~~~l~d~~~~~ae~I~ed 76 (111)
T 1xg8_A 28 SKDIYDWLQPLLKRKYPNISFKYTYID-I-----TKDNDNLTDHDLQFIERIEQD 76 (111)
T ss_dssp HHHHHHHHHHHHHHHCTTSCEEEEEEE-T-----TTC---CCHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHhCcCCCCceEEEEEe-c-----cCCccchhHHHHHHHHHHhhc
Confidence 457999999999999976655555554 2 123558899999999998765
No 17
>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=22.82 E-value=49 Score=25.09 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=17.6
Q ss_pred CChhhhcchhhhhhCCCCEEEcccCCc
Q 028426 3 RKPSELLEIGSVLRDQVPVMKRFTGGG 29 (209)
Q Consensus 3 ~~~~~evnld~~~~~gI~vvRR~sGGG 29 (209)
|+..+..=..+++++|+.++||+.+||
T Consensus 11 G~~~E~~a~~~L~~~G~~ilr~~~sgg 37 (147)
T 2eo0_A 11 GSSVERYIVSRLRDKGFAVIRAPASGS 37 (147)
T ss_dssp -CHHHHHHHHHHHHTTCEEECC-----
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcccCC
Confidence 555566668899999999999985554
No 18
>3epu_A STM2138 virulence chaperone; TYPEIII secretion system, SRCA (SSRB-regulated chaperone A); 2.50A {Salmonella typhimurium} SCOP: d.198.1.0
Probab=22.70 E-value=46 Score=25.24 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=31.9
Q ss_pred ccCCceeEecCCc--eEEEEEEeCCCC--CCCCchhHHHHHHHHHhHHhH-hcCc
Q 028426 25 FTGGGTVVVDKGT--VFVTLICNKDDV--PGVQPFPRSIMSWSGLLYNQV-FKGI 74 (209)
Q Consensus 25 ~sGGGaVyhD~g~--l~~Sli~~~~~~--~~~~~~~~~i~~~L~~l~~~~-~~gv 74 (209)
-||||+++-++|. +-|..-.|.... ..+....+.+++.++.+|--. -+|+
T Consensus 77 etG~~~L~ye~~~~alll~~r~~l~~~~~e~lE~~~dvvik~~~~~~~~~~~~~~ 131 (144)
T 3epu_A 77 ENNGPHLCYDNNSQSLLLALNFSLNESSVEKLECEIEVVIRSMENLYHILQDKGI 131 (144)
T ss_dssp HTTCCEEEEETTTTEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCceEEEecCCccccHHHeecCCccccHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 3899999999876 445444444332 234456778888888887442 3455
Done!