RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 028426
(209 letters)
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 246
Score = 82.9 bits (204), Expect = 5e-20
Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 7/177 (3%)
Query: 4 KPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWS 63
P + + D V + +R +GGG V D G T + K + +++
Sbjct: 50 NPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYD-KTISTSIVLNAL 108
Query: 64 GLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDY-AEGNMAFLK 122
L + V G+RK G+A TK+R HH + L + +L
Sbjct: 109 NALGVSAE--ASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLN 166
Query: 123 QPARAPEYRMERGHTEFICRMNEYLP---RTDFIEKTTEAVETYFSVKNVNLEATEE 176
+ + + + E LP E TEA ++ + +
Sbjct: 167 PDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPN 223
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 241
Score = 74.8 bits (183), Expect = 4e-17
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 9/166 (5%)
Query: 3 RKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPG--VQPFPRSIM 60
+ E + V + + V++R +GGG V D + T+I +D+ + F ++
Sbjct: 47 QNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAFDFKSFSTPVI 106
Query: 61 SWSGLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA- 119
+ L + ND +KF GNAQ+ R +HH L+D +A
Sbjct: 107 NTLAQLGVKAEFT------GRNDLEIDGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLAN 160
Query: 120 FLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFS 165
LK E + + + + LP+ +EK + + Y
Sbjct: 161 ALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMK 206
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 74.8 bits (183), Expect = 5e-17
Identities = 26/183 (14%), Positives = 72/183 (39%), Gaps = 10/183 (5%)
Query: 4 KPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP---GVQPFPRSIM 60
E +++ + ++ + + +R+TGGG V D G + +++ + DD+ + +++
Sbjct: 52 VAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVV 111
Query: 61 SWSGLLYNQVFK----GIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEG 116
+ +L ++ ++ D + G +K G A ++ K + H + L
Sbjct: 112 NSLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLD 171
Query: 117 NMA-FLKQPARAPEYRMERGHTEFICRMNEYLPRT--DFIEKTTEAVETYFSVKNVNLEA 173
++ LK P ++ + E + + +++ + + +
Sbjct: 172 MLSAVLKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTI 231
Query: 174 TEE 176
TE+
Sbjct: 232 TEK 234
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 74.0 bits (181), Expect = 1e-16
Identities = 21/173 (12%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 16 RDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQ------ 69
Q V+ R +GG VV+D G + ++L+ ++ + + ++
Sbjct: 69 GFQHDVIVRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGYELMYELICSMFQDHREQIE 128
Query: 70 VFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQP---- 124
+ + + D +KF G +Q + + A ++
Sbjct: 129 AREIVGSYCPGSYDLSIDGKKFAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKA 188
Query: 125 --ARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATE 175
+ ++ R E + ++E L + + +L
Sbjct: 189 VAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMTLQQHGASLLTES 241
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus
agalactiae [TaxId: 1311]}
Length = 269
Score = 63.5 bits (154), Expect = 7e-13
Identities = 21/165 (12%), Positives = 41/165 (24%), Gaps = 15/165 (9%)
Query: 16 RDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGV------QPFPRSIMSWSGLLYNQ 69
+ R GG VV D+G + +L+ + I S Y
Sbjct: 76 SRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQP 135
Query: 70 VFKG--IADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARA 127
+ + + D +KF G AQ KN + + +
Sbjct: 136 IEHFEVETSYCPGKFDLSINGKKFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYK 195
Query: 128 PEYRMERGHTEFICR-------MNEYLPRTDFIEKTTEAVETYFS 165
+ +++ L +E + +
Sbjct: 196 IGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISLK 240
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B
[TaxId: 5061]}
Length = 359
Score = 27.8 bits (61), Expect = 1.1
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 92 GGNAQSIT--KNRWIHHTSFLWDYAEG 116
GG+A ++ WI H + +
Sbjct: 152 GGDAITVDDSDLVWIDHVTTARIGRQH 178
>d1x9la_ b.2.10.1 (A:) Hypothetical protein DR1885 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 149
Score = 25.3 bits (55), Expect = 3.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVD 34
ML L++G + V + + T G T+ V
Sbjct: 110 MLMGLKRPLKVG----ETVNITLKATDGRTLNVA 139
>d1gppa_ b.86.1.2 (A:) VMA1-derived endonuclease (VDE) PI-Scei
intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 229
Score = 25.3 bits (55), Expect = 4.8
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 124 PARAPEYRMERGHTEFICRMNEYL----PRTDFIEKTTEAVETYFSVKNVNLEATEEPCG 179
++ R +F C L PR+ T YF V + + P G
Sbjct: 60 AHKSDSSREMPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDG 119
Query: 180 AEF 182
Sbjct: 120 RIV 122
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 805,599
Number of extensions: 36727
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 8
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)