Query 028427
Match_columns 209
No_of_seqs 126 out of 180
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 18:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyu_K Ubiquinol-cytochrome C 18.0 78 0.0027 21.8 2.4 34 134-167 19-52 (56)
2 2xpp_A IWS1, ECU08_0440; trans 17.6 1.4E+02 0.0049 23.7 4.3 77 133-209 54-144 (145)
3 2zjs_E Preprotein translocase 15.8 1.6E+02 0.0054 19.7 3.6 37 133-171 24-60 (60)
4 2amj_A Modulator of drug activ 14.6 45 0.0016 26.4 0.6 43 163-205 162-204 (204)
5 3lcm_A SMU.1420, putative oxid 12.5 55 0.0019 25.6 0.5 91 111-205 86-190 (196)
6 3rpe_A MDAB, modulator of drug 11.4 1.1E+02 0.0039 25.1 2.2 42 164-205 176-217 (218)
7 2x43_S Sherp; membrane protein 10.4 1.6E+02 0.0056 21.1 2.4 22 187-208 37-58 (67)
8 3mab_A Uncharacterized protein 9.1 3.3E+02 0.011 19.9 3.8 35 148-201 53-87 (93)
9 2knc_B Integrin beta-3; transm 8.8 59 0.002 23.4 -0.5 27 176-202 28-54 (79)
10 2i3d_A AGR_C_3351P, hypothetic 8.3 2.6E+02 0.0089 21.0 3.0 38 115-152 105-142 (249)
No 1
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=18.03 E-value=78 Score=21.79 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=23.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHhccCCCccchh
Q 028427 134 YSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLM 167 (209)
Q Consensus 134 ~~v~l~g~gaiVal~v~~aVL~AIdsIPLLp~lL 167 (209)
|+...+|.++.+++.-+.-==+-++.||++.+-+
T Consensus 19 psa~~~Gaaa~v~~ly~tdwr~IL~~IP~ig~kf 52 (56)
T 2fyu_K 19 PTASLWGAVGAVGLVWATDWRLILDWVPYINGKF 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHTSSSSCCCCC
T ss_pred hhhhhhhhhhhhheeeeccHHHHHhhcCccCCcc
Confidence 4677788776666655544556678889887643
No 2
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=17.58 E-value=1.4e+02 Score=23.65 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=55.6
Q ss_pred cchhhhhhHHHHHHHH-------------HHHHHHHHhccCCCccchheeeeeeeeeeehhhhcc-cccchHHHHHHHHH
Q 028427 133 KYSLVLYGTGALLALW-------------LTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL-FKKNRDELATKIEE 198 (209)
Q Consensus 133 K~~v~l~g~gaiVal~-------------v~~aVL~AIdsIPLLp~lLELVGLgYt~WFvyRyLL-f~e~RqEL~~kI~~ 198 (209)
+.+++=-|+--+|..| +=..+++++..+|+=..-|.=-|||-++-|.+++=- ..++|+-.-.-|+.
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~ 133 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQK 133 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHH
Confidence 3455555666667777 568999999999988888888899999988886543 45566666666777
Q ss_pred HhhhhcCCCCC
Q 028427 199 LKQQVLGSNDD 209 (209)
Q Consensus 199 lk~~IlG~~d~ 209 (209)
..+-|+|.+|+
T Consensus 134 WsRpi~~~s~~ 144 (145)
T 2xpp_A 134 WTNEVFKPEGG 144 (145)
T ss_dssp HHHHHTC----
T ss_pred HHHHHhCCCCC
Confidence 77888887653
No 3
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=15.85 E-value=1.6e+02 Score=19.66 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=20.5
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHhccCCCccchheeee
Q 028427 133 KYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVG 171 (209)
Q Consensus 133 K~~v~l~g~gaiVal~v~~aVL~AIdsIPLLp~lLELVG 171 (209)
|..+.-+.+.+++...+.+..+..+|.+ +..+++++|
T Consensus 24 r~e~~~~t~vViv~v~i~~~~~~~vD~~--~~~~~~~ig 60 (60)
T 2zjs_E 24 REQVVEGTQAILLFTLAFMVILGLYDTV--FRFLIGLLR 60 (60)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 3345556666666666666667777763 455555554
No 4
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=14.65 E-value=45 Score=26.44 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=34.8
Q ss_pred ccchheeeeeeeeeeehhhhcccccchHHHHHHHHHHhhhhcC
Q 028427 163 FPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 205 (209)
Q Consensus 163 Lp~lLELVGLgYt~WFvyRyLLf~e~RqEL~~kI~~lk~~IlG 205 (209)
+-.+|..+|+-+..+|....+-..++|++.+++.++.-++++|
T Consensus 162 l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (204)
T 2amj_A 162 FHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 204 (204)
T ss_dssp HHHHHHHTTCEECCCEEECSTTTSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCeecceEEEeCCCCcHHHHHHHHHHHHHHHHhhC
Confidence 4678899999999998887777777899999988887666653
No 5
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=12.48 E-value=55 Score=25.65 Aligned_cols=91 Identities=10% Similarity=0.174 Sum_probs=57.2
Q ss_pred CCCcchhHHHHHHhhh---hcc---------ccCcchhhhhhHHHHHHHHHHHHHHHHhccCCCccchheeeeeeeeeee
Q 028427 111 SPVDGLTNELLDNLKI---KFD---------SEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWF 178 (209)
Q Consensus 111 ~~v~~q~~Evl~~L~~---kwd---------~e~K~~v~l~g~gaiVal~v~~aVL~AIdsIPLLp~lLELVGLgYt~WF 178 (209)
-.+.++....++.+-. .|. -.+|+.+++...|+- . +......+.. . +++-.+|..+|+-+..++
T Consensus 86 ~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~-~-~y~~~~~~~~-~-~~l~~~l~~~G~~~~~~~ 161 (196)
T 3lcm_A 86 SGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTP-S-FAMPFVQDYG-K-VLKKQILKPCAISPVKLT 161 (196)
T ss_dssp TBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSC-G-GGTTTSSCTT-H-HHHHHTTGGGTCCCEEEE
T ss_pred ccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCc-h-hhHhhhccCH-H-HHHHHHHHhcCCceeeEE
Confidence 3566777888888731 111 135665555444332 1 1100001112 2 567889999999999888
Q ss_pred hhhhcc--cccchHHHHHHHHHHhhhhcC
Q 028427 179 SWRYLL--FKKNRDELATKIEELKQQVLG 205 (209)
Q Consensus 179 vyRyLL--f~e~RqEL~~kI~~lk~~IlG 205 (209)
....+- ..+.|++.+++++++-++|+-
T Consensus 162 ~~~g~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (196)
T 3lcm_A 162 ELTSIEKISDDERQKLLHKVAQITRNILE 190 (196)
T ss_dssp EECSTTTSCHHHHHHHHHHHHHHHHTCCC
T ss_pred EEeCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 877664 457899999999999888875
No 6
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=11.39 E-value=1.1e+02 Score=25.12 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=36.2
Q ss_pred cchheeeeeeeeeeehhhhcccccchHHHHHHHHHHhhhhcC
Q 028427 164 PKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 205 (209)
Q Consensus 164 p~lLELVGLgYt~WFvyRyLLf~e~RqEL~~kI~~lk~~IlG 205 (209)
-.+|+.+|+-+.-+|+.-.....++|++.++++++.-++++.
T Consensus 176 ~~~l~f~G~~~l~~~~~~g~~~~~~~~~~~~~~~~~L~~~~~ 217 (218)
T 3rpe_A 176 HKANQFLGMKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVN 217 (218)
T ss_dssp HHHHHHTTCEECCCEEECSTTTSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCEEeceEEEeCCCChHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999988888889999999999887776654
No 7
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=10.45 E-value=1.6e+02 Score=21.09 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHhhhhcCCCC
Q 028427 187 KNRDELATKIEELKQQVLGSND 208 (209)
Q Consensus 187 e~RqEL~~kI~~lk~~IlG~~d 208 (209)
+-|+...++++++|.+|.|..|
T Consensus 37 elkD~~~~~~E~iKDKisgGsd 58 (67)
T 2x43_S 37 EVRDAVSSTVESIKDKLSGGSS 58 (67)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHhHHHHHHHHhccCcc
Confidence 4577888999999999999665
No 8
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=9.13 E-value=3.3e+02 Score=19.91 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=25.8
Q ss_pred HHHHHHHHHhccCCCccchheeeeeeeeeeehhhhcccccchHHHHHHHHHHhh
Q 028427 148 WLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQ 201 (209)
Q Consensus 148 ~v~~aVL~AIdsIPLLp~lLELVGLgYt~WFvyRyLLf~e~RqEL~~kI~~lk~ 201 (209)
.++-++.+||..+| -+.+..+.|++|.+-++++|-
T Consensus 53 ~~L~aL~gAi~G~~-------------------w~~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 53 SELYALEGAVQGIR-------------------WHGLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp HHHHHHHHHHHTSC-------------------GGGSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCc-------------------HHHCCHHHHHHHHHHHHHhhc
Confidence 34556667777665 345888999999999998874
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.78 E-value=59 Score=23.42 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=18.5
Q ss_pred eeehhhhcccccchHHHHHHHHHHhhh
Q 028427 176 LWFSWRYLLFKKNRDELATKIEELKQQ 202 (209)
Q Consensus 176 ~WFvyRyLLf~e~RqEL~~kI~~lk~~ 202 (209)
++++||.++.-.+|+|...--++..+.
T Consensus 28 llliwk~~~~i~DrrE~~kFEkE~~~~ 54 (79)
T 2knc_B 28 ALLIWKLLITIHDRKEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888889888998865444444443
No 10
>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36
Probab=8.32 E-value=2.6e+02 Score=20.99 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=25.3
Q ss_pred chhHHHHHHhhhhccccCcchhhhhhHHHHHHHHHHHH
Q 028427 115 GLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTV 152 (209)
Q Consensus 115 ~q~~Evl~~L~~kwd~e~K~~v~l~g~gaiVal~v~~a 152 (209)
..+.++++.+.......++..+++...|+.+++.++..
T Consensus 105 ~d~~~~i~~l~~~~~~~~~i~l~G~S~Gg~~a~~~a~~ 142 (249)
T 2i3d_A 105 SDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMR 142 (249)
T ss_dssp HHHHHHHHHHHHHCTTCCCEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhc
Confidence 33567777776554333456677777898888887654
Done!