Query 028427
Match_columns 209
No_of_seqs 126 out of 180
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 18:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028427.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028427hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j01h2 d.141.1.1 (H:83-171) R 17.7 13 0.00096 25.9 0.1 20 165-184 3-22 (89)
2 d1rl6a2 d.141.1.1 (A:82-170) R 17.5 12 0.00088 26.0 -0.1 14 165-178 3-16 (89)
3 d2qamg2 d.141.1.1 (G:82-176) R 13.4 19 0.0014 25.4 -0.1 19 165-183 3-21 (95)
4 d2zjre1 d.141.1.1 (E:83-172) R 13.2 19 0.0014 25.0 -0.0 19 165-183 3-21 (90)
5 d2ebfx3 d.3.1.17 (X:1094-1285) 12.4 42 0.0031 25.7 1.8 20 184-203 40-59 (192)
6 d1xkta_ c.69.1.22 (A:) Fatty a 11.9 80 0.0058 21.1 3.0 35 131-165 83-117 (286)
7 d3bvua1 a.8.3.1 (A:412-522) Go 11.5 33 0.0024 23.7 0.8 26 173-198 3-30 (111)
8 d1jmkc_ c.69.1.22 (C:) Surfact 10.3 86 0.0063 21.1 2.8 43 118-161 58-100 (230)
9 d1q4ra_ d.58.4.4 (A:) Hypothet 10.2 60 0.0044 21.3 1.8 30 176-205 6-35 (103)
10 d1tr0a_ d.58.4.4 (A:) Boiling 9.5 82 0.0059 20.7 2.3 31 175-205 10-40 (106)
No 1
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=17.65 E-value=13 Score=25.90 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=14.5
Q ss_pred chheeeeeeeeeeehhhhcc
Q 028427 165 KLMEVVGLGYTLWFSWRYLL 184 (209)
Q Consensus 165 ~lLELVGLgYt~WFvyRyLL 184 (209)
.-|||+|+||=+.-.-++|.
T Consensus 3 k~LelvGVGYra~~~g~~L~ 22 (89)
T d2j01h2 3 KELLIKGIGYRARLVGRALE 22 (89)
T ss_dssp CEECCCSSSCEECCBTTBEE
T ss_pred EEEEEEEEEEEEEEeCCEEE
Confidence 45899999998866555443
No 2
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.46 E-value=12 Score=26.05 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=10.6
Q ss_pred chheeeeeeeeeee
Q 028427 165 KLMEVVGLGYTLWF 178 (209)
Q Consensus 165 ~lLELVGLgYt~WF 178 (209)
.-|||||+||=+--
T Consensus 3 k~L~lvGVGYra~~ 16 (89)
T d1rl6a2 3 KALELVGVGYRASK 16 (89)
T ss_dssp EEEEEESTTCEEEE
T ss_pred EEEEEEEEEEEEEe
Confidence 45899999997643
No 3
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=13.37 E-value=19 Score=25.39 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=13.4
Q ss_pred chheeeeeeeeeeehhhhc
Q 028427 165 KLMEVVGLGYTLWFSWRYL 183 (209)
Q Consensus 165 ~lLELVGLgYt~WFvyRyL 183 (209)
.-|||+|+||=+..-=++|
T Consensus 3 k~L~lvGVGYRa~~~g~~L 21 (95)
T d2qamg2 3 KKLQLVGVGYRAAVKGNVI 21 (95)
T ss_dssp CCCCBCSSSCCCCCCTTEE
T ss_pred EEEEEEeEEEEEEEcCCEE
Confidence 4589999999776544443
No 4
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=13.17 E-value=19 Score=25.01 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=12.6
Q ss_pred chheeeeeeeeeeehhhhc
Q 028427 165 KLMEVVGLGYTLWFSWRYL 183 (209)
Q Consensus 165 ~lLELVGLgYt~WFvyRyL 183 (209)
.-|||+|+||=+-..-++|
T Consensus 3 k~L~lvGVGYra~~~g~~L 21 (90)
T d2zjre1 3 INLELRGVGFRAKLTGKAL 21 (90)
T ss_dssp EEEECBSTTCCCCCBTTBC
T ss_pred EEEEEEEEEEEEEecCCEE
Confidence 3589999999765443333
No 5
>d2ebfx3 d.3.1.17 (X:1094-1285) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
Probab=12.43 E-value=42 Score=25.71 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=16.6
Q ss_pred ccccchHHHHHHHHHHhhhh
Q 028427 184 LFKKNRDELATKIEELKQQV 203 (209)
Q Consensus 184 Lf~e~RqEL~~kI~~lk~~I 203 (209)
+..+-|+||.+||+.+|+++
T Consensus 40 vsedlreelmqkidaikndv 59 (192)
T d2ebfx3 40 VSEDLREELMQKIDAIKNDV 59 (192)
T ss_dssp SCHHHHHHHHHHHHHHHTCH
T ss_pred hhHHHHHHHHHHHHHHhccc
Confidence 44566999999999999875
No 6
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.85 E-value=80 Score=21.10 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred cCcchhhhhhHHHHHHHHHHHHHHHHhccCCCccc
Q 028427 131 EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPK 165 (209)
Q Consensus 131 e~K~~v~l~g~gaiVal~v~~aVL~AIdsIPLLp~ 165 (209)
..++.+++...|++||+.++.-.-+.+.++.++..
T Consensus 83 ~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~~ 117 (286)
T d1xkta_ 83 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 117 (286)
T ss_dssp SSCCEEEEETHHHHHHHHHHHHHHHC------CCE
T ss_pred CCceEEeecCCccHHHHHHHHHHHHcCCCceeEEE
Confidence 45667777889999999998877776666655443
No 7
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.52 E-value=33 Score=23.69 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=19.0
Q ss_pred eeeeeehhhhcccccchH--HHHHHHHH
Q 028427 173 GYTLWFSWRYLLFKKNRD--ELATKIEE 198 (209)
Q Consensus 173 gYt~WFvyRyLLf~e~Rq--EL~~kI~~ 198 (209)
-|||+|+.|.-++.-+|+ .++..++.
T Consensus 3 yWtG~yTSr~~lK~~~R~~e~~L~~~E~ 30 (111)
T d3bvua1 3 YWSGYYTSRPYHKRMDRVLMHYVRAAEM 30 (111)
T ss_dssp BCCGGGTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeehhChHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999984 34444443
No 8
>d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]}
Probab=10.28 E-value=86 Score=21.07 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHHHhhhhccccCcchhhhhhHHHHHHHHHHHHHHHHhccCC
Q 028427 118 NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIP 161 (209)
Q Consensus 118 ~Evl~~L~~kwd~e~K~~v~l~g~gaiVal~v~~aVL~AIdsIP 161 (209)
...++.+.+ ...+.++.++++..|++||+-++.-.-.-+..++
T Consensus 58 ~~~~~~i~~-~~~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~ 100 (230)
T d1jmkc_ 58 DRYADLIQK-LQPEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQ 100 (230)
T ss_dssp HHHHHHHHH-HCCSSCEEEEEETHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH-hCCCCcEEEEeeccChHHHHHHHHhhhhhCccce
Confidence 345555542 2234556788888999999887765555444443
No 9
>d1q4ra_ d.58.4.4 (A:) Hypothetical protein AT3G17210.1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.24 E-value=60 Score=21.30 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=23.8
Q ss_pred eeehhhhcccccchHHHHHHHHHHhhhhcC
Q 028427 176 LWFSWRYLLFKKNRDELATKIEELKQQVLG 205 (209)
Q Consensus 176 ~WFvyRyLLf~e~RqEL~~kI~~lk~~IlG 205 (209)
+.|-++-=...++++++.+.++.|+.+|-|
T Consensus 6 Vlfk~k~~~~~~~~~~~~~~l~~L~~~ip~ 35 (103)
T d1q4ra_ 6 LLASFKDGVSPEKIEELIKGYANLVNLIEP 35 (103)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTHHHHCTT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhhhhCce
Confidence 455555556778899999999999998876
No 10
>d1tr0a_ d.58.4.4 (A:) Boiling stable protein 1 {European aspen (Populus tremula) [TaxId: 113636]}
Probab=9.53 E-value=82 Score=20.74 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=24.0
Q ss_pred eeeehhhhcccccchHHHHHHHHHHhhhhcC
Q 028427 175 TLWFSWRYLLFKKNRDELATKIEELKQQVLG 205 (209)
Q Consensus 175 t~WFvyRyLLf~e~RqEL~~kI~~lk~~IlG 205 (209)
.+.|-++.=...++++++.+.+..++.+|-|
T Consensus 10 iVlfklk~~~~~~~~~~~~~~l~~l~~~ip~ 40 (106)
T d1tr0a_ 10 TLLTRFKDEITREQIDNYINDYTNLLDLIPS 40 (106)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCc
Confidence 3455555556677899999999999998876
Done!