BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028428
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 2/208 (0%)
Query: 3 MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
M++EEQ + + Y + ++ L YEVTL F K K W+MDT EK+E
Sbjct: 209 MQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA 268
Query: 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
K G + F+ GKY +A +Y K +E + ++ E + L+ +LN A C L
Sbjct: 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328
Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
KL +Y++ C K L L+ N K LYRR +A L +E E A+ D ++ L ++P N+ +
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388
Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
L + K +E+ + I+ M K
Sbjct: 389 LQISMCQKKAKEHNERDRRIYANMFKKF 416
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 110/208 (52%), Gaps = 2/208 (0%)
Query: 3 MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
M+K E + V + Y E + ++ L YE+ L F K K W+M++ EK+E
Sbjct: 88 MEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQS 147
Query: 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
K G + F+ GKY +A +Y+K +E+ SF+++E +A LRL+ +LN A C L
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207
Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
KL+ +S C K LEL+ N K L+RR +AHL ++ E A AD ++ L + PNN+ K
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267
Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
+ + R + +++ M ++
Sbjct: 268 TQLAVCQQRIRRQLAREKKLYANMFERL 295
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 2/208 (0%)
Query: 3 MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
M++EEQ + + Y + ++ L YEVTL F K K W+MDT EK+E
Sbjct: 209 MQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA 268
Query: 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
K G + F+ GKY +A +Y K +E + ++ E + L+ +LN A C L
Sbjct: 269 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328
Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
KL +Y++ C K L L+ N K LYRR +A L +E E A+ D ++ L ++P N+ +
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388
Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
L + K +E+ + + M K
Sbjct: 389 LQIFMCQKKAKEHNERDRRTYANMFKKF 416
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%)
Query: 27 VSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKA 86
+ ++ L YE+ L F K K W+ ++ EK+E K G + F+ GKY +A +Y+K
Sbjct: 114 IPPNAELKYELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKI 173
Query: 87 AKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 146
+E+ SF+++E +A LRL+ +LN A C LKL+ +S C K LEL+ N K L
Sbjct: 174 VSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 233
Query: 147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206
RR +AHL ++ E A AD ++ L + PNN+ K + + R + +++ M
Sbjct: 234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293
Query: 207 KM 208
++
Sbjct: 294 RL 295
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 8/208 (3%)
Query: 2 TMKKEEQATVTISAEYLCSHEVS---ELVSADSVLHYEVTLIDF--TKE-KPFWKMDTHE 55
+MK E+A V + E E + V + L YEV +I F TKE K M E
Sbjct: 115 SMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEE 174
Query: 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQ--ANGLRLSCYL 113
+I A +R+K DGN LF+ K A ++YE A + F K+Q A ++ C+L
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234
Query: 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173
N AAC +KL+ Y E C VL E N KAL+RR +A + +++ A D ++A
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294
Query: 174 PNNRVVKLVYMELKDKQREYAKYQAEIF 201
P+++ ++ L ++++ + Q E++
Sbjct: 295 PDDKAIRRELRALAEQEKALYQKQKEMY 322
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKL 122
K+ GN F++ + A KKY K + +E + +D + + + LSC LN ACKLK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 123 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV 182
D+ C + LE++P N KALYRR+Q E ++A AD+K+A I P ++ ++
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 183 YMELKDK 189
+++K K
Sbjct: 347 LLKVKQK 353
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
E+ + +GN LF+ G Y A Y +A + D Q + + N AAC L
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGL---------DATPQDQAV---LHRNRAACHL 76
Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
KLEDY + + +K +E + +VKALYRRSQA K L++A D++R ++++P N+V +
Sbjct: 77 KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 46 KPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK--HQ 103
K + EK+++ K +GN F+ + A KY++A H DD+ +
Sbjct: 24 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDK 82
Query: 104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAE 163
+ +SC LN A C K +DY + +KVL+++ NVKALY+ A++ LE+A+
Sbjct: 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 142
Query: 164 ADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 207
++ +A +++PNN ++ Y +K +E K FG M K
Sbjct: 143 ENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 51 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 110
MD EA K+ GN ++ G Y +A + Y+KA +E + S
Sbjct: 3 MDPGNSAEAW---KNLGNAYYKQGDYQKAIEYYQKA---LELDPN------------NAS 44
Query: 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170
+ N K DY + K LEL+P N KA YRR A+ K + +KA D ++AL
Sbjct: 45 AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Query: 171 TIDPNNRVVKLVYMELKDKQ 190
+DPNN K K KQ
Sbjct: 105 ELDPNNAKAKQNLGNAKQKQ 124
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 49 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAA---KIIEFHHSFTDDEKHQAN 105
W M EK +A +GN L+R G A+ KY A K ++ E Q +
Sbjct: 3 WAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLD 62
Query: 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD 165
LN CKL +E+Y E C+ +L NVKA ++R +AH ++A+AD
Sbjct: 63 QQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQAD 122
Query: 166 IKRALTIDP 174
+ L +DP
Sbjct: 123 FAKVLELDP 131
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAA---KIIEFHHSFTDDEKHQANGLRLSC 111
EK +A +GN L+R G A+ KY A K ++ E Q +
Sbjct: 3 EKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPL 62
Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
LN CKL +E+Y E C+ +L NVKA ++R +AH ++A+AD + L
Sbjct: 63 LLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLE 122
Query: 172 IDP 174
+DP
Sbjct: 123 LDP 125
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
GN ++ G Y A + Y+KA ++ N L NA K DY
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALEL-------------DPNNAEAWYNLGNAYYKQG--DYD 60
Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186
E K LEL+P N +A Y A+ K + ++A ++AL +DPNN K
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 187 KDKQ 190
K KQ
Sbjct: 121 KQKQ 124
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%)
Query: 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD 165
G + N K DY E K LEL+P N +A Y A+ K + ++A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 166 IKRALTIDPNNRVVKLVYMELKDKQ 190
++AL +DPNN K K KQ
Sbjct: 66 YQKALELDPNNAEAKQNLGNAKQKQ 90
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE---FHHSFTDDEKHQANGLRLSC 111
+K+++ E + GN LF Y A Y A ++ + E + + +
Sbjct: 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
Y N + C L + D E ++VL+ E N KAL+RR++A + +L++AE D+K L
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125
Query: 172 IDP 174
P
Sbjct: 126 NHP 128
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 123
K GN LF KY A+ Y +A N L Y N A C LK++
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQ 52
Query: 124 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178
+ + C + LEL+ +VKA + Q L+ ++A A+++RA ++ R+
Sbjct: 53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 53 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY 112
H K + + K GN LF KY A+ Y +A N L Y
Sbjct: 2 PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYY 46
Query: 113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172
N A C LK++ + + C + LEL+ +VKA + Q L+ ++A A+++RA ++
Sbjct: 47 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
Query: 173 DPNNRV 178
R+
Sbjct: 107 AKEQRL 112
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 109 LSCYLNNAACKLKLE-------DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEK 161
L Y NNA L DY E K LEL P N +A Y A+ K + ++
Sbjct: 36 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 95
Query: 162 AEADIKRALTIDPNNRVVKLVYMELKDKQ 190
A ++AL + PNN K K KQ
Sbjct: 96 AIEYYQKALELYPNNAEAKQNLGNAKQKQ 124
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 117
E + +K+ GN F+ G Y A + Y +A K + N + Y N AA
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK------------RDPENAI---LYSNRAA 55
Query: 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
C KL ++ C + L+ +K R++ + E KA+ + AL +DP+N
Sbjct: 56 CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
GN ++ G Y A + Y+KA ++ + + N K DY
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALEL---------------DPRSAEAWYNLGNAYYKQGDYD 52
Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174
E K LEL+P + +A Y A+ K + ++A ++AL +DP
Sbjct: 53 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
GN ++ G Y A + Y+KA ++ + + N K DY
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALEL---------------DPRSAEAWYNLGNAYYKQGDYD 86
Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174
E K LEL+P + +A Y A+ K + ++A ++AL +DP
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170
+ N K DY E K LEL+P + +A Y A+ K + ++A ++AL
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 171 TIDP 174
+DP
Sbjct: 63 ELDP 66
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 129
L R G+Y A+ KYE K +T K + C+ C K E E
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI------CH-----CFSKDEKPVEAI 315
Query: 130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
+C++VL++EP NV AL R++A+L ++A D + A + N++ ++
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 86 AAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144
A + +FH + D + + A R + +L K L D TKV++L+
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVIQLKMDFTA 95
Query: 145 ALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
A +R LK +L++AE D K+ L +P+
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 129
L R G+Y A+ KYE K +T K + C+ C K E E
Sbjct: 244 LIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERI------CH-----CFSKDEKPVEAI 292
Query: 130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
+C++VL+ EP NV AL R++A+L ++A D + A + N++ ++
Sbjct: 293 RICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIR 343
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 86 AAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144
A + +FH + D + + A R + +L K L D TKV+ L+
Sbjct: 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDL-------TKVIALKXDFTA 72
Query: 145 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
A +R LK +L++AE D K+ L +P+ +
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170
+ N K DY E K LEL+P + +A Y A+ K + ++A ++AL
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 171 TIDP 174
+DP
Sbjct: 65 ELDP 68
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 129
L R G+Y A+ KYE K +T K + C+ C K E E
Sbjct: 267 LIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERI------CH-----CFSKDEKPVEAI 315
Query: 130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
+C++VL+ EP NV AL R++A+L ++A D + A + N++ ++
Sbjct: 316 RVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIR 366
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 86 AAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144
A + +FH + D + + A R + +L K L D TKV++L+
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPD-------LTKVIQLKXDFTA 95
Query: 145 ALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
A +R LK +L++AE D K+ L +P+
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 1 MTMKKEEQATVTISAEYLCSHEVSE---LVSADSVLHYEVTLIDFTKEKPFW 49
+ MKK E A VTI EY S+ +V +S + YEV L+ F K+K W
Sbjct: 325 LNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKESW 376
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 123
K+ GN F+ G Y +A K Y +A K N Y N AAC KL
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIK---------------RNPKDAKLYSNRAACYTKLL 64
Query: 124 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173
++ C + ++LEP +K R++ A + KA ++AL +D
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 131
+A Y++A K YE A I+F+ E + +N + Y N + L+ E Y
Sbjct: 12 QANDYFKA-KDYENA---IKFYSQAI--ELNPSNAIY---YGNRSLAYLRTECYGYALGD 62
Query: 132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185
T+ +EL+ +K YRR+ +++ + A D + + + P+++ K+ Y E
Sbjct: 63 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 131
+A Y++A K YE A I+F+ E + +N + Y N + L+ E Y
Sbjct: 19 QANDYFKA-KDYENA---IKFYSQAI--ELNPSNAI---YYGNRSLAYLRTECYGYALGD 69
Query: 132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185
T+ +EL+ +K YRR+ +++ + A D + + + P+++ K+ Y E
Sbjct: 70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 131
+A Y++A K YE A I+F+ E + +N + Y N + L+ E Y +
Sbjct: 27 QANDYFKA-KDYENA---IKFYSQAI--ELNPSNAI---YYGNRSLAYLRTECYGYALND 77
Query: 132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185
T+ +EL+ +K YRR+ +++ + A D + + + P+++ K+ Y E
Sbjct: 78 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 131
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 123
K+ GN F A + A K Y+ A ++ F Y N +AC +
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF---------------YSNISACYISTG 73
Query: 124 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 166
D + TK LE++P + KAL RR+ A+ A D+
Sbjct: 74 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 123
K+ GN F A + A K Y+ A ++ F Y N +AC +
Sbjct: 25 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF---------------YSNISACYISTG 69
Query: 124 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 166
D + TK LE++P + KAL RR+ A+ A D+
Sbjct: 70 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 112
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 123
K GN FR KY A K Y A ++ E Y N +AC + +
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKE----------------DPVFYSNLSACYVSVG 53
Query: 124 DYSETSSLCTKVLELEPLNVKALYRRSQAH 153
D + + TK LEL+P K L RR+ A+
Sbjct: 54 DLKKVVEMSTKALELKPDYSKVLLRRASAN 83
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 167
R++ Y+ A D +E + K L+L+ N Y R Q + ++A D
Sbjct: 269 RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 168 RALTIDPNN 176
+A +DP N
Sbjct: 329 KAKELDPEN 337
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 1 MTMKKEEQATVTISAEYLCSHEVSE---LVSADSVLHYEVTLIDFTKE 45
+ MKK E A VTI EY S+ +V +S + YEV L+ F K+
Sbjct: 309 LNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 356
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173
NAA K +YS+ L T+ L + P N L R+ A+ + + EKA D + A +D
Sbjct: 18 GNAAMARK--EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75
Query: 174 P 174
P
Sbjct: 76 P 76
>pdb|3RL4|A Chain A, Rat Metallophosphodiesterase Mpped2 G252h Mutant
Length = 296
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 52 DTHEKIEACERKKHDGNLLFRAGKY--------------WRASKKYEKAAKIIEFHHSFT 97
DTH + + + G++L G + W + YE +I +H T
Sbjct: 67 DTHSRTDGIQMPY--GDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKI-VIAGNHELT 123
Query: 98 DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139
D++ A+ ++ Y + KLK ED+ SL T + L+
Sbjct: 124 FDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQ 165
>pdb|3RL3|A Chain A, Rat Metallophosphodiesterase Mpped2
Length = 296
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 52 DTHEKIEACERKKHDGNLLFRAGKY--------------WRASKKYEKAAKIIEFHHSFT 97
DTH + + + G++L G + W + YE +I +H T
Sbjct: 67 DTHSRTDGIQMPY--GDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKI-VIAGNHELT 123
Query: 98 DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139
D++ A+ ++ Y + KLK ED+ SL T + L+
Sbjct: 124 FDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQ 165
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
Y N AA KL + E + C K +E +P V+A R++ A + E A + A T
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100
Query: 172 ID 173
D
Sbjct: 101 KD 102
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
Y N AA KL + E + C K +E +P V+A R++ A + E A + A T
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 172 ID 173
D
Sbjct: 236 KD 237
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
+ N AA KL +Y+ C + + ++P KA R A ++ +A A K+AL
Sbjct: 49 FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108
Query: 172 IDPNNRVVK 180
+DP+N K
Sbjct: 109 LDPDNETYK 117
>pdb|3RL5|A Chain A, Rat Metallophosphodiesterase Mpped2 H67r Mutant
Length = 296
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136
W + YE +I +H T D++ A+ ++ Y + KLK ED+ SL T +
Sbjct: 104 WLGNLPYEYKI-VIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSI 162
Query: 137 ELE 139
L+
Sbjct: 163 YLQ 165
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 3 MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMD 52
M++EEQ + + Y + ++ L YEVTL F K K W+MD
Sbjct: 213 MQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMD 264
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 125 YSETSSLCTKVLELEPLNVK-------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
Y + + K LE+EP N + +YR + + S + +++A+T++P+N
Sbjct: 156 YQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDREGSVKSFSLGPLRKAVTLNPDNS 215
Query: 178 VVKLVYMELK 187
+K V++ LK
Sbjct: 216 YIK-VFLALK 224
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 125 YSETSSLCTKVLELEPLNVK-------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
Y + + K LE+EP N + +YR + + S + +++A+T++P+N
Sbjct: 156 YQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDREGSVKSFSLGPLRKAVTLNPDNS 215
Query: 178 VVKLVYMELK 187
+K V++ LK
Sbjct: 216 YIK-VFLALK 224
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 166
+R Y + K YS+ L +V + + +V A++KT +++ +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 167 KRALTIDPNN----RVVKLVYMELK 187
+R+L P+N V+ L Y++++
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQ 90
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
E++K GN LF+ G Y A Y++ T ++ Y N A +
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQL---------ITAQPQNPVG------YSNKAMALI 49
Query: 121 KLEDYSETSSLCTKVL 136
KL +Y++ +C + L
Sbjct: 50 KLGEYTQAIQMCQQGL 65
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 166
+R Y + K YS+ L +V + + +V A++KT +++ +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 167 KRALTIDPNN----RVVKLVYMELK 187
+R+L P+N V+ L Y++++
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQ 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,791,237
Number of Sequences: 62578
Number of extensions: 214706
Number of successful extensions: 874
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 80
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)