Query 028428
Match_columns 209
No_of_seqs 171 out of 3052
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p5q_A FKBP52, FK506-binding p 100.0 9.9E-30 3.4E-34 205.5 26.9 208 1-208 86-295 (336)
2 1kt0_A FKBP51, 51 kDa FK506-bi 100.0 2.2E-29 7.7E-34 211.3 26.6 208 1-208 207-416 (457)
3 2if4_A ATFKBP42; FKBP-like, al 100.0 1.1E-28 3.8E-33 199.5 17.4 206 2-207 115-328 (338)
4 3rkv_A Putative peptidylprolyl 99.9 2.7E-25 9.3E-30 160.8 14.0 154 53-206 4-161 (162)
5 2fbn_A 70 kDa peptidylprolyl i 99.9 3.1E-22 1E-26 149.3 20.1 175 33-207 11-186 (198)
6 4gco_A Protein STI-1; structur 99.9 1.8E-22 6.2E-27 140.7 14.9 115 57-186 10-124 (126)
7 2hr2_A Hypothetical protein; a 99.9 5.9E-22 2E-26 142.2 12.0 138 56-196 7-155 (159)
8 1ihg_A Cyclophilin 40; ppiase 99.8 4E-20 1.4E-24 151.1 17.1 155 52-206 215-370 (370)
9 3upv_A Heat shock protein STI1 99.8 3.8E-19 1.3E-23 122.9 13.2 117 59-190 3-125 (126)
10 4gcn_A Protein STI-1; structur 99.8 2.7E-19 9.4E-24 124.5 12.4 114 57-186 5-125 (127)
11 3sz7_A HSC70 cochaperone (SGT) 99.8 3.6E-18 1.2E-22 123.4 13.9 123 58-195 9-133 (164)
12 3gyz_A Chaperone protein IPGC; 99.8 4.6E-18 1.6E-22 122.0 14.3 106 57-177 33-138 (151)
13 2xcb_A PCRH, regulatory protei 99.8 8.2E-18 2.8E-22 118.9 14.0 124 58-196 16-139 (142)
14 2vgx_A Chaperone SYCD; alterna 99.8 7.9E-18 2.7E-22 120.2 13.2 123 58-195 19-141 (148)
15 4ga2_A E3 SUMO-protein ligase 99.8 7.2E-18 2.5E-22 120.5 11.4 116 58-188 29-145 (150)
16 3q49_B STIP1 homology and U bo 99.7 1.9E-17 6.6E-22 115.3 12.0 121 60-195 9-134 (137)
17 3urz_A Uncharacterized protein 99.7 2E-16 6.9E-21 118.8 16.2 132 60-191 4-136 (208)
18 4ga2_A E3 SUMO-protein ligase 99.7 1.2E-17 4E-22 119.5 7.4 114 66-194 3-116 (150)
19 1elw_A TPR1-domain of HOP; HOP 99.7 3.5E-16 1.2E-20 105.3 13.7 115 59-188 3-117 (118)
20 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 1.4E-17 4.9E-22 139.5 8.2 203 1-204 95-377 (457)
21 4gyw_A UDP-N-acetylglucosamine 99.7 2.9E-16 9.8E-21 138.2 15.6 124 58-196 7-130 (723)
22 2vyi_A SGTA protein; chaperone 99.7 1E-15 3.6E-20 104.7 14.7 122 55-191 7-128 (131)
23 1a17_A Serine/threonine protei 99.7 5.2E-15 1.8E-19 105.7 18.0 119 54-187 7-125 (166)
24 2xev_A YBGF; tetratricopeptide 99.7 2.4E-15 8.4E-20 103.4 15.5 116 62-189 4-122 (129)
25 1hxi_A PEX5, peroxisome target 99.7 2.3E-16 7.8E-21 108.7 9.8 101 63-178 20-120 (121)
26 4i17_A Hypothetical protein; T 99.7 1.8E-15 6.3E-20 114.4 15.3 128 61-204 8-143 (228)
27 1elr_A TPR2A-domain of HOP; HO 99.7 1.4E-15 4.7E-20 104.2 13.1 120 59-194 3-129 (131)
28 2pl2_A Hypothetical conserved 99.7 5.9E-16 2E-20 117.0 12.3 118 63-196 42-170 (217)
29 2lni_A Stress-induced-phosphop 99.7 9.2E-16 3.1E-20 105.6 11.8 116 59-189 15-130 (133)
30 2dba_A Smooth muscle cell asso 99.7 1.5E-15 5E-20 106.6 12.6 117 60-188 28-144 (148)
31 4gyw_A UDP-N-acetylglucosamine 99.7 1.1E-15 3.8E-20 134.4 13.6 122 60-196 43-164 (723)
32 2pl2_A Hypothetical conserved 99.6 5.8E-15 2E-19 111.5 14.9 91 105-196 114-204 (217)
33 3vtx_A MAMA; tetratricopeptide 99.6 6.2E-15 2.1E-19 107.8 14.6 146 59-205 4-168 (184)
34 2h6f_A Protein farnesyltransfe 99.6 2.8E-15 9.5E-20 122.9 11.8 120 58-192 95-215 (382)
35 1na0_A Designed protein CTPR3; 99.6 3.1E-14 1.1E-18 96.4 15.2 115 60-189 9-123 (125)
36 2h6f_A Protein farnesyltransfe 99.6 7.3E-15 2.5E-19 120.4 13.4 115 60-189 131-246 (382)
37 1zu2_A Mitochondrial import re 99.6 3.1E-15 1.1E-19 107.0 9.6 105 72-191 14-139 (158)
38 3k9i_A BH0479 protein; putativ 99.6 1.7E-15 5.9E-20 103.3 7.2 100 72-186 2-104 (117)
39 3vtx_A MAMA; tetratricopeptide 99.6 4.6E-14 1.6E-18 103.1 15.3 119 60-178 39-176 (184)
40 2c2l_A CHIP, carboxy terminus 99.6 1.3E-14 4.4E-19 114.0 12.9 102 60-176 4-105 (281)
41 3urz_A Uncharacterized protein 99.6 3.1E-14 1.1E-18 106.7 13.9 107 66-188 60-201 (208)
42 2e2e_A Formate-dependent nitri 99.6 7.2E-14 2.5E-18 101.6 15.1 115 60-189 44-161 (177)
43 4gco_A Protein STI-1; structur 99.6 2.4E-14 8.3E-19 99.2 11.5 99 106-205 10-108 (126)
44 4i17_A Hypothetical protein; T 99.6 3.6E-14 1.2E-18 107.2 12.9 118 61-193 43-169 (228)
45 1hh8_A P67PHOX, NCF-2, neutrop 99.6 6.2E-14 2.1E-18 104.5 13.5 128 58-204 4-147 (213)
46 3ieg_A DNAJ homolog subfamily 99.6 1.6E-13 5.5E-18 109.1 16.5 122 62-194 236-357 (359)
47 2kck_A TPR repeat; tetratricop 99.5 3.8E-14 1.3E-18 94.3 9.6 100 63-177 9-111 (112)
48 3qky_A Outer membrane assembly 99.5 4.7E-13 1.6E-17 103.2 17.1 119 60-190 52-198 (261)
49 1wao_1 Serine/threonine protei 99.5 1.2E-14 4.2E-19 122.3 8.7 116 59-189 5-120 (477)
50 2fo7_A Synthetic consensus TPR 99.5 2.8E-13 9.5E-18 92.6 13.9 128 62-205 3-130 (136)
51 3qky_A Outer membrane assembly 99.5 1.6E-13 5.4E-18 105.9 13.8 112 60-183 15-137 (261)
52 3uq3_A Heat shock protein STI1 99.5 1.3E-13 4.5E-18 104.9 12.9 113 59-186 138-256 (258)
53 2vsy_A XCC0866; transferase, g 99.5 1.2E-13 4E-18 118.3 13.6 130 59-204 22-154 (568)
54 3as5_A MAMA; tetratricopeptide 99.5 6.6E-13 2.2E-17 95.8 15.4 129 60-204 42-170 (186)
55 2yhc_A BAMD, UPF0169 lipoprote 99.5 4.8E-13 1.7E-17 101.3 15.2 113 60-184 4-137 (225)
56 3uq3_A Heat shock protein STI1 99.5 4.5E-13 1.5E-17 101.9 14.9 144 60-204 79-233 (258)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.1E-13 3.1E-17 101.4 16.4 115 57-186 40-154 (275)
58 3gyz_A Chaperone protein IPGC; 99.5 2.1E-13 7.3E-18 97.5 11.8 97 108-205 35-131 (151)
59 4abn_A Tetratricopeptide repea 99.5 4.1E-13 1.4E-17 112.8 14.2 128 60-204 102-247 (474)
60 4abn_A Tetratricopeptide repea 99.5 2.3E-13 8E-18 114.3 12.7 122 61-197 171-312 (474)
61 1hh8_A P67PHOX, NCF-2, neutrop 99.5 3.5E-13 1.2E-17 100.4 12.1 103 60-177 37-155 (213)
62 3u4t_A TPR repeat-containing p 99.5 4.9E-13 1.7E-17 103.0 13.1 117 62-194 5-125 (272)
63 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-12 5.5E-17 98.2 15.2 121 60-195 57-177 (243)
64 2vgx_A Chaperone SYCD; alterna 99.5 7.2E-14 2.5E-18 99.4 7.1 108 81-204 8-115 (148)
65 2pzi_A Probable serine/threoni 99.5 1.3E-13 4.6E-18 120.7 10.3 127 61-204 434-560 (681)
66 1fch_A Peroxisomal targeting s 99.5 3.9E-13 1.3E-17 107.8 12.2 122 60-196 217-349 (368)
67 2y4t_A DNAJ homolog subfamily 99.5 2.5E-12 8.7E-17 105.9 17.3 120 62-192 259-378 (450)
68 3as5_A MAMA; tetratricopeptide 99.5 6.5E-13 2.2E-17 95.8 12.1 123 59-196 7-129 (186)
69 2q7f_A YRRB protein; TPR, prot 99.5 9.1E-13 3.1E-17 99.6 13.3 129 60-204 91-219 (243)
70 4eqf_A PEX5-related protein; a 99.5 6.7E-13 2.3E-17 106.8 13.1 126 65-204 182-307 (365)
71 2vq2_A PILW, putative fimbrial 99.5 2.4E-12 8.2E-17 95.8 15.1 87 110-196 77-166 (225)
72 1w3b_A UDP-N-acetylglucosamine 99.5 1.5E-12 5.1E-17 105.7 15.0 143 61-204 170-331 (388)
73 1w3b_A UDP-N-acetylglucosamine 99.5 1E-12 3.4E-17 106.7 13.8 117 60-191 67-183 (388)
74 2pzi_A Probable serine/threoni 99.5 8.8E-14 3E-18 121.9 7.7 112 60-187 467-578 (681)
75 3ieg_A DNAJ homolog subfamily 99.5 1.8E-12 6.2E-17 103.0 14.5 112 60-186 3-117 (359)
76 2vq2_A PILW, putative fimbrial 99.5 4.1E-12 1.4E-16 94.6 15.5 86 109-194 113-199 (225)
77 2ho1_A Type 4 fimbrial biogene 99.4 3.2E-12 1.1E-16 97.4 15.1 84 111-194 107-192 (252)
78 3u4t_A TPR repeat-containing p 99.4 3E-12 1E-16 98.5 14.6 115 62-191 76-190 (272)
79 4eqf_A PEX5-related protein; a 99.4 7.5E-13 2.6E-17 106.5 11.6 122 60-196 213-346 (365)
80 1qqe_A Vesicular transport pro 99.4 3.6E-12 1.2E-16 100.3 15.2 129 59-196 76-218 (292)
81 2r5s_A Uncharacterized protein 99.4 1E-12 3.4E-17 95.7 11.1 130 62-207 8-173 (176)
82 2gw1_A Mitochondrial precursor 99.4 3E-12 1E-16 106.9 15.4 107 56-178 2-108 (514)
83 2kat_A Uncharacterized protein 99.4 1.4E-12 4.8E-17 88.1 11.0 101 78-193 3-105 (115)
84 3hym_B Cell division cycle pro 99.4 2.2E-12 7.6E-17 101.5 13.7 123 60-188 193-315 (330)
85 3hym_B Cell division cycle pro 99.4 3.5E-12 1.2E-16 100.4 14.6 128 61-204 91-219 (330)
86 3mkr_A Coatomer subunit epsilo 99.4 3.5E-12 1.2E-16 100.6 14.5 115 60-191 130-248 (291)
87 2l6j_A TPR repeat-containing p 99.4 3.9E-14 1.3E-18 94.7 2.8 93 60-167 4-102 (111)
88 3qou_A Protein YBBN; thioredox 99.4 1.4E-12 4.8E-17 102.6 12.1 122 60-196 117-274 (287)
89 2e2e_A Formate-dependent nitri 99.4 1.7E-13 5.8E-18 99.6 6.2 124 66-205 16-142 (177)
90 2yhc_A BAMD, UPF0169 lipoprote 99.4 6.1E-12 2.1E-16 95.2 14.8 130 61-203 42-209 (225)
91 3cv0_A Peroxisome targeting si 99.4 2.6E-12 8.8E-17 101.0 13.2 122 60-196 172-305 (327)
92 3upv_A Heat shock protein STI1 99.4 2.9E-12 1E-16 87.8 11.9 89 109-197 4-92 (126)
93 2ho1_A Type 4 fimbrial biogene 99.4 2.4E-12 8.1E-17 98.1 12.5 130 59-204 36-167 (252)
94 4gcn_A Protein STI-1; structur 99.4 9.1E-13 3.1E-17 91.2 9.2 89 108-196 7-102 (127)
95 1fch_A Peroxisomal targeting s 99.4 8.5E-12 2.9E-16 100.0 16.0 96 108-204 216-311 (368)
96 2y4t_A DNAJ homolog subfamily 99.4 9.8E-12 3.3E-16 102.4 16.7 114 58-186 24-140 (450)
97 3edt_B KLC 2, kinesin light ch 99.4 9.2E-12 3.2E-16 95.6 15.1 140 57-204 40-195 (283)
98 1hxi_A PEX5, peroxisome target 99.4 9.6E-12 3.3E-16 85.3 13.5 94 111-205 19-112 (121)
99 2fo7_A Synthetic consensus TPR 99.4 6.8E-12 2.3E-16 85.5 12.4 102 60-176 35-136 (136)
100 3fp2_A TPR repeat-containing p 99.4 1.3E-12 4.5E-17 109.8 10.5 115 49-179 14-128 (537)
101 1qqe_A Vesicular transport pro 99.4 6.1E-12 2.1E-16 99.0 13.7 112 59-179 116-235 (292)
102 2l6j_A TPR repeat-containing p 99.4 1.2E-11 4.1E-16 82.3 12.0 83 109-191 4-92 (111)
103 2xcb_A PCRH, regulatory protei 99.4 1.1E-11 3.8E-16 87.0 12.2 94 109-203 18-111 (142)
104 1na3_A Designed protein CTPR2; 99.4 1.7E-11 5.8E-16 78.7 12.0 82 108-189 8-89 (91)
105 3sz7_A HSC70 cochaperone (SGT) 99.4 1.2E-11 4.1E-16 88.8 12.4 96 108-204 10-105 (164)
106 1xnf_A Lipoprotein NLPI; TPR, 99.4 8.8E-12 3E-16 95.8 12.0 124 70-205 15-138 (275)
107 3ulq_A Response regulator aspa 99.3 2.5E-11 8.4E-16 98.6 15.0 132 57-196 140-283 (383)
108 3ro3_A PINS homolog, G-protein 99.3 3.1E-11 1E-15 84.9 13.6 132 56-196 5-148 (164)
109 2gw1_A Mitochondrial precursor 99.3 2.4E-11 8.4E-16 101.3 15.0 121 61-190 373-496 (514)
110 3fp2_A TPR repeat-containing p 99.3 8.2E-12 2.8E-16 105.0 12.1 143 53-196 236-397 (537)
111 2xpi_A Anaphase-promoting comp 99.3 3.1E-11 1E-15 102.9 15.4 119 61-187 476-594 (597)
112 4g1t_A Interferon-induced prot 99.3 4.4E-11 1.5E-15 99.2 15.8 126 60-191 51-186 (472)
113 3mkr_A Coatomer subunit epsilo 99.3 2E-11 6.9E-16 96.2 13.0 96 71-181 177-273 (291)
114 3cv0_A Peroxisome targeting si 99.3 9.9E-11 3.4E-15 91.9 16.4 143 61-204 90-266 (327)
115 2hr2_A Hypothetical protein; a 99.3 1.9E-11 6.6E-16 87.5 10.8 95 109-204 11-128 (159)
116 2xpi_A Anaphase-promoting comp 99.3 4.3E-11 1.5E-15 102.0 14.9 130 60-205 373-502 (597)
117 2vsy_A XCC0866; transferase, g 99.3 1E-11 3.4E-16 106.3 10.8 116 73-204 2-117 (568)
118 3q15_A PSP28, response regulat 99.3 1.2E-10 4E-15 94.6 16.2 109 57-174 179-292 (378)
119 3q49_B STIP1 homology and U bo 99.3 5E-11 1.7E-15 82.4 12.2 95 109-204 9-103 (137)
120 3u3w_A Transcriptional activat 99.3 2.7E-11 9.4E-16 95.1 12.0 124 60-192 115-251 (293)
121 3ulq_A Response regulator aspa 99.3 8.9E-11 3E-15 95.3 15.2 110 56-174 180-295 (383)
122 3edt_B KLC 2, kinesin light ch 99.3 4.5E-11 1.5E-15 91.7 12.6 109 57-172 82-198 (283)
123 3n71_A Histone lysine methyltr 99.3 1.4E-10 4.8E-15 97.8 16.5 142 55-204 304-461 (490)
124 3u3w_A Transcriptional activat 99.3 4.9E-11 1.7E-15 93.7 12.7 107 59-173 154-267 (293)
125 3q15_A PSP28, response regulat 99.3 7.3E-11 2.5E-15 95.8 14.1 139 57-204 138-287 (378)
126 2ifu_A Gamma-SNAP; membrane fu 99.3 6.6E-11 2.3E-15 93.7 12.9 108 59-177 115-228 (307)
127 3nf1_A KLC 1, kinesin light ch 99.3 1.4E-10 4.8E-15 90.4 14.5 139 57-205 66-222 (311)
128 3ma5_A Tetratricopeptide repea 99.3 5.6E-11 1.9E-15 78.5 10.4 79 109-187 7-87 (100)
129 1na3_A Designed protein CTPR2; 99.3 5.1E-11 1.7E-15 76.4 9.9 84 59-157 8-91 (91)
130 2qfc_A PLCR protein; TPR, HTH, 99.3 1.6E-10 5.6E-15 90.6 14.5 125 63-196 118-255 (293)
131 3rkv_A Putative peptidylprolyl 99.2 6E-11 2E-15 84.9 10.4 95 108-203 10-122 (162)
132 4a1s_A PINS, partner of inscut 99.2 1.4E-10 4.7E-15 94.4 13.9 125 57-192 45-181 (411)
133 2ifu_A Gamma-SNAP; membrane fu 99.2 7.2E-11 2.5E-15 93.5 11.3 107 60-176 76-188 (307)
134 2qfc_A PLCR protein; TPR, HTH, 99.2 1.5E-10 5.1E-15 90.9 13.0 107 59-173 154-267 (293)
135 3nf1_A KLC 1, kinesin light ch 99.2 2.9E-10 9.9E-15 88.6 14.6 139 57-205 108-305 (311)
136 1p5q_A FKBP52, FK506-binding p 99.2 9.1E-11 3.1E-15 94.3 11.8 99 58-171 194-293 (336)
137 2kc7_A BFR218_protein; tetratr 99.2 2.2E-11 7.5E-16 79.8 6.6 68 113-180 4-72 (99)
138 2lni_A Stress-induced-phosphop 99.2 2.3E-10 8E-15 78.1 12.0 96 108-204 15-110 (133)
139 1elw_A TPR1-domain of HOP; HOP 99.2 2.9E-10 9.8E-15 75.7 12.2 95 109-204 4-98 (118)
140 2kc7_A BFR218_protein; tetratr 99.2 1.3E-10 4.6E-15 76.0 10.3 63 107-177 32-95 (99)
141 2kck_A TPR repeat; tetratricop 99.2 8.8E-11 3E-15 77.7 9.5 94 111-205 8-104 (112)
142 3sf4_A G-protein-signaling mod 99.2 3.7E-10 1.3E-14 91.2 15.0 130 58-196 185-326 (406)
143 2ond_A Cleavage stimulation fa 99.2 2.3E-10 7.7E-15 90.5 12.8 119 61-193 100-219 (308)
144 3gw4_A Uncharacterized protein 99.2 3E-10 1E-14 83.4 12.4 129 59-196 25-166 (203)
145 3ro3_A PINS homolog, G-protein 99.2 4.8E-10 1.6E-14 78.6 13.0 108 59-175 48-161 (164)
146 3ro2_A PINS homolog, G-protein 99.2 2.4E-10 8.2E-15 89.5 12.5 122 60-192 5-138 (338)
147 2xev_A YBGF; tetratricopeptide 99.2 3.1E-10 1E-14 77.5 11.1 93 111-204 4-102 (129)
148 2vyi_A SGTA protein; chaperone 99.2 9.4E-10 3.2E-14 74.5 12.8 98 106-204 9-106 (131)
149 3sf4_A G-protein-signaling mod 99.2 2.3E-10 8E-15 92.4 11.4 122 60-192 9-142 (406)
150 3ro2_A PINS homolog, G-protein 99.2 8.4E-10 2.9E-14 86.3 14.1 138 58-205 181-330 (338)
151 1a17_A Serine/threonine protei 99.2 7.1E-10 2.4E-14 78.6 12.4 96 108-204 12-107 (166)
152 1ouv_A Conserved hypothetical 99.1 1.6E-09 5.6E-14 83.6 14.6 108 61-189 7-122 (273)
153 2dba_A Smooth muscle cell asso 99.1 1.1E-09 3.8E-14 76.1 12.3 95 109-204 28-125 (148)
154 1na0_A Designed protein CTPR3; 99.1 1.6E-09 5.5E-14 72.7 12.3 95 109-204 9-103 (125)
155 2ond_A Cleavage stimulation fa 99.1 6E-10 2.1E-14 88.0 11.6 112 60-186 50-177 (308)
156 1pc2_A Mitochondria fission pr 99.1 6.3E-10 2.1E-14 78.8 10.2 102 76-192 14-120 (152)
157 2c2l_A CHIP, carboxy terminus 99.1 7.1E-10 2.4E-14 86.8 11.6 90 109-198 4-93 (281)
158 4g1t_A Interferon-induced prot 99.1 4.5E-10 1.5E-14 93.1 10.9 121 60-187 94-219 (472)
159 2fbn_A 70 kDa peptidylprolyl i 99.1 2.4E-09 8.3E-14 78.9 13.7 96 108-204 37-148 (198)
160 3qww_A SET and MYND domain-con 99.1 2.3E-09 7.9E-14 89.0 15.0 121 60-187 298-431 (433)
161 4a1s_A PINS, partner of inscut 99.1 8.1E-10 2.8E-14 89.9 12.1 131 57-196 163-322 (411)
162 2if4_A ATFKBP42; FKBP-like, al 99.1 8E-11 2.7E-15 94.7 5.5 103 62-179 232-335 (338)
163 1elr_A TPR2A-domain of HOP; HO 99.1 9.6E-10 3.3E-14 74.5 9.9 95 109-204 4-105 (131)
164 1dce_A Protein (RAB geranylger 99.1 2.5E-09 8.4E-14 91.8 14.5 116 60-190 63-191 (567)
165 2v5f_A Prolyl 4-hydroxylase su 99.1 1.6E-09 5.6E-14 72.1 9.9 83 110-192 6-95 (104)
166 1wao_1 Serine/threonine protei 99.0 1E-10 3.4E-15 98.4 4.6 102 60-176 40-154 (477)
167 4f3v_A ESX-1 secretion system 99.0 2.6E-09 9E-14 83.5 12.2 110 62-185 137-249 (282)
168 2v5f_A Prolyl 4-hydroxylase su 99.0 4.2E-09 1.4E-13 70.1 11.2 83 60-150 5-87 (104)
169 1dce_A Protein (RAB geranylger 99.0 6E-09 2.1E-13 89.4 14.9 136 54-204 22-170 (567)
170 3qwp_A SET and MYND domain-con 99.0 1E-08 3.5E-13 85.1 15.5 123 60-189 287-422 (429)
171 3gw4_A Uncharacterized protein 99.0 6.1E-09 2.1E-13 76.3 12.4 109 57-173 63-177 (203)
172 3k9i_A BH0479 protein; putativ 99.0 5.6E-10 1.9E-14 75.5 6.2 83 121-204 2-87 (117)
173 1ouv_A Conserved hypothetical 99.0 1.8E-08 6.2E-13 77.7 15.5 108 61-189 39-158 (273)
174 3dra_A Protein farnesyltransfe 99.0 1.2E-08 4E-13 81.0 14.2 116 60-190 67-193 (306)
175 3rjv_A Putative SEL1 repeat pr 99.0 8.3E-09 2.8E-13 77.2 12.1 129 60-189 18-174 (212)
176 3rjv_A Putative SEL1 repeat pr 99.0 7.4E-09 2.5E-13 77.5 11.7 78 109-189 50-137 (212)
177 3dra_A Protein farnesyltransfe 99.0 1E-08 3.4E-13 81.4 12.6 116 62-192 105-235 (306)
178 2r5s_A Uncharacterized protein 98.9 1.1E-09 3.7E-14 79.5 6.0 115 56-171 36-172 (176)
179 1ihg_A Cyclophilin 40; ppiase 98.9 6.6E-09 2.2E-13 84.6 11.1 95 109-204 223-333 (370)
180 1hz4_A MALT regulatory protein 98.9 4.9E-08 1.7E-12 78.5 16.1 128 59-195 52-192 (373)
181 3dss_A Geranylgeranyl transfer 98.9 8.1E-08 2.8E-12 76.9 15.8 100 76-190 90-192 (331)
182 2ooe_A Cleavage stimulation fa 98.9 1.1E-08 3.9E-13 86.5 11.4 114 60-187 321-435 (530)
183 1zu2_A Mitochondrial import re 98.9 1.1E-08 3.7E-13 73.1 9.1 71 121-191 14-94 (158)
184 3ma5_A Tetratricopeptide repea 98.9 9.4E-09 3.2E-13 67.6 8.2 80 60-154 7-88 (100)
185 3q7a_A Farnesyltransferase alp 98.9 5.2E-08 1.8E-12 78.4 13.9 120 71-205 65-194 (349)
186 3dss_A Geranylgeranyl transfer 98.9 3.5E-08 1.2E-12 79.0 12.8 126 64-204 33-171 (331)
187 3bee_A Putative YFRE protein; 98.9 2.9E-08 9.9E-13 64.7 10.2 71 109-179 6-79 (93)
188 3qou_A Protein YBBN; thioredox 98.8 1.6E-08 5.5E-13 79.2 8.2 113 59-171 150-283 (287)
189 3q7a_A Farnesyltransferase alp 98.8 5.2E-08 1.8E-12 78.4 11.1 132 59-190 87-255 (349)
190 1hz4_A MALT regulatory protein 98.8 8.1E-08 2.8E-12 77.2 12.3 133 54-196 8-154 (373)
191 2ooe_A Cleavage stimulation fa 98.8 1.8E-07 6E-12 79.2 14.7 113 77-205 255-383 (530)
192 2kat_A Uncharacterized protein 98.8 5.2E-08 1.8E-12 65.3 9.0 71 126-196 2-72 (115)
193 4f3v_A ESX-1 secretion system 98.7 1.1E-07 3.6E-12 74.4 10.9 126 63-205 105-235 (282)
194 1nzn_A CGI-135 protein, fissio 98.7 2.9E-07 9.8E-12 62.9 10.8 104 74-192 15-123 (126)
195 1klx_A Cysteine rich protein B 98.7 3.3E-07 1.1E-11 63.9 11.0 97 66-183 31-135 (138)
196 3n71_A Histone lysine methyltr 98.6 2.2E-07 7.4E-12 78.4 10.5 108 58-173 349-465 (490)
197 2xm6_A Protein corresponding t 98.6 4.1E-07 1.4E-11 76.2 12.1 78 109-188 363-451 (490)
198 2f4e_A ATFKBP42; FKBP-like, al 98.5 1.2E-07 4.1E-12 69.3 5.7 60 1-60 114-179 (180)
199 2xm6_A Protein corresponding t 98.4 7.8E-06 2.7E-10 68.4 15.4 108 60-188 39-158 (490)
200 3e4b_A ALGK; tetratricopeptide 98.4 2.6E-06 8.8E-11 70.9 12.4 107 62-188 178-294 (452)
201 3u64_A Protein TP_0956; tetrat 98.4 2.9E-06 9.8E-11 66.2 11.4 87 76-175 179-272 (301)
202 4b4t_Q 26S proteasome regulato 98.4 5.3E-06 1.8E-10 67.7 13.5 120 56-175 51-207 (434)
203 4b4t_Q 26S proteasome regulato 98.4 1.9E-06 6.6E-11 70.3 10.8 102 60-170 135-236 (434)
204 1b89_A Protein (clathrin heavy 98.4 1.3E-06 4.5E-11 72.2 9.5 106 62-192 124-256 (449)
205 3e4b_A ALGK; tetratricopeptide 98.4 3.9E-06 1.3E-10 69.8 12.1 101 64-188 217-329 (452)
206 1klx_A Cysteine rich protein B 98.4 6E-06 2.1E-10 57.4 11.2 93 74-189 9-105 (138)
207 1xi4_A Clathrin heavy chain; a 98.4 4.3E-06 1.5E-10 77.5 13.0 108 62-192 1197-1329(1630)
208 3ffl_A Anaphase-promoting comp 98.4 2.2E-05 7.5E-10 55.9 13.5 118 62-187 22-165 (167)
209 3ly7_A Transcriptional activat 98.3 1.2E-05 4.2E-10 64.8 13.6 115 62-177 198-344 (372)
210 3o48_A Mitochondria fission 1 98.3 1.2E-05 4.2E-10 55.1 11.1 84 109-192 40-127 (134)
211 1y8m_A FIS1; mitochondria, unk 98.3 1.8E-05 6.3E-10 54.9 12.1 83 109-191 39-125 (144)
212 1jvw_A Macrophage infectivity 98.3 2.6E-06 8.9E-11 61.4 8.0 56 1-58 99-155 (167)
213 3mv2_B Coatomer subunit epsilo 98.3 6.1E-06 2.1E-10 65.3 9.7 100 64-181 180-291 (310)
214 3o5q_A Peptidyl-prolyl CIS-tra 98.2 2.4E-06 8.3E-11 58.9 5.2 43 1-43 83-126 (128)
215 3bee_A Putative YFRE protein; 98.2 6.6E-06 2.3E-10 53.3 7.0 68 60-142 6-76 (93)
216 3kz7_A FK506-binding protein 3 98.2 2.5E-06 8.5E-11 58.0 5.1 42 1-42 75-118 (119)
217 2vn1_A 70 kDa peptidylprolyl i 98.2 2.9E-06 9.9E-11 58.5 5.5 44 1-44 83-127 (129)
218 1pc2_A Mitochondria fission pr 98.2 1.1E-05 3.9E-10 56.9 8.4 77 60-150 32-112 (152)
219 2ppn_A FK506-binding protein 1 98.1 3.2E-06 1.1E-10 56.3 5.3 42 1-42 64-106 (107)
220 2pbc_A FK506-binding protein 2 98.1 4.3E-06 1.5E-10 55.2 5.4 44 1-44 54-98 (102)
221 2awg_A 38 kDa FK-506 binding p 98.1 3.3E-06 1.1E-10 57.3 5.0 42 2-43 75-117 (118)
222 2d9f_A FK506-binding protein 8 98.1 4E-06 1.4E-10 58.3 5.4 49 2-50 79-129 (135)
223 1yat_A FK506 binding protein; 98.1 4.2E-06 1.4E-10 56.3 5.0 41 2-42 71-112 (113)
224 3mv2_B Coatomer subunit epsilo 98.1 5E-05 1.7E-09 60.0 11.8 122 63-198 103-232 (310)
225 4dip_A Peptidyl-prolyl CIS-tra 98.0 6.1E-06 2.1E-10 56.5 5.2 43 1-44 80-123 (125)
226 1xi4_A Clathrin heavy chain; a 98.0 6.8E-05 2.3E-09 69.7 12.7 107 64-175 1053-1166(1630)
227 1r9h_A FKB-6, FK506 binding pr 98.0 8.1E-06 2.8E-10 56.8 5.2 44 1-44 78-122 (135)
228 3qww_A SET and MYND domain-con 98.0 4.5E-05 1.6E-09 63.2 10.6 80 58-145 338-423 (433)
229 3qwp_A SET and MYND domain-con 98.0 4E-05 1.4E-09 63.5 9.5 89 58-154 327-424 (429)
230 1b89_A Protein (clathrin heavy 97.8 8.5E-06 2.9E-10 67.4 3.5 117 62-191 63-191 (449)
231 1u79_A FKBP-type peptidyl-prol 97.8 1.1E-05 3.8E-10 55.6 3.5 41 2-42 82-128 (129)
232 3jxv_A 70 kDa peptidyl-prolyl 97.8 2.1E-05 7.2E-10 63.6 5.2 44 1-44 187-236 (356)
233 2ff4_A Probable regulatory pro 97.7 0.0014 4.9E-08 53.4 15.1 114 58-171 113-233 (388)
234 4e6h_A MRNA 3'-END-processing 97.7 0.0027 9.3E-08 55.5 17.1 141 64-206 382-532 (679)
235 1q1c_A FK506-binding protein 4 97.6 8.2E-05 2.8E-09 58.1 5.2 44 1-44 115-159 (280)
236 4e6h_A MRNA 3'-END-processing 97.5 0.0015 5.3E-08 57.1 12.5 129 62-205 436-568 (679)
237 3u64_A Protein TP_0956; tetrat 97.4 0.00032 1.1E-08 54.7 6.4 64 124-187 178-249 (301)
238 3ffl_A Anaphase-promoting comp 97.4 0.002 6.8E-08 45.9 9.9 95 59-154 62-166 (167)
239 3ly7_A Transcriptional activat 97.3 0.001 3.5E-08 53.7 8.5 67 62-144 279-345 (372)
240 1nzn_A CGI-135 protein, fissio 97.3 0.0012 4.1E-08 44.9 7.4 77 61-150 36-115 (126)
241 3o48_A Mitochondria fission 1 97.1 0.0061 2.1E-07 41.7 9.7 77 61-151 41-120 (134)
242 3jxv_A 70 kDa peptidyl-prolyl 97.1 8.4E-05 2.9E-09 60.0 0.1 44 1-44 75-119 (356)
243 4h7y_A Dual specificity protei 97.1 0.021 7.1E-07 40.0 12.0 111 62-180 15-131 (161)
244 1y8m_A FIS1; mitochondria, unk 97.0 0.0069 2.4E-07 41.9 9.4 77 60-150 39-118 (144)
245 4gns_B Protein CSD3, chitin bi 96.8 0.014 4.9E-07 51.4 11.7 61 111-171 339-399 (754)
246 2uy1_A Cleavage stimulation fa 96.8 0.059 2E-06 45.2 14.9 125 61-187 214-364 (493)
247 3mv2_A Coatomer subunit alpha; 96.7 0.13 4.5E-06 40.5 15.2 120 62-181 116-245 (325)
248 3txn_A 26S proteasome regulato 96.7 0.052 1.8E-06 44.2 13.4 99 65-172 104-210 (394)
249 1ya0_A SMG-7 transcript varian 96.4 0.034 1.2E-06 46.7 11.1 82 109-190 152-233 (497)
250 4b4t_R RPN7, 26S proteasome re 96.2 0.097 3.3E-06 43.1 12.4 99 63-173 134-238 (429)
251 3mkr_B Coatomer subunit alpha; 95.9 0.47 1.6E-05 37.3 17.0 115 63-177 105-232 (320)
252 2uy1_A Cleavage stimulation fa 95.8 0.21 7.1E-06 41.8 13.0 124 61-205 287-411 (493)
253 1ya0_A SMG-7 transcript varian 95.6 0.089 3.1E-06 44.2 9.8 83 58-155 150-232 (497)
254 3kae_A CDC27, possible protein 95.6 0.25 8.5E-06 35.5 10.5 96 65-180 38-151 (242)
255 1zbp_A Hypothetical protein VP 95.5 0.16 5.3E-06 39.1 10.2 69 118-186 6-74 (273)
256 4gns_B Protein CSD3, chitin bi 95.1 0.048 1.6E-06 48.1 6.9 60 61-135 338-397 (754)
257 4g26_A Pentatricopeptide repea 95.1 0.8 2.7E-05 38.4 14.2 102 63-178 108-212 (501)
258 4g26_A Pentatricopeptide repea 94.6 1 3.5E-05 37.7 13.6 106 75-195 85-193 (501)
259 2v6y_A AAA family ATPase, P60 94.3 0.18 6.1E-06 31.4 6.4 37 56-92 7-43 (83)
260 2w2u_A Hypothetical P60 katani 93.7 0.19 6.3E-06 31.4 5.5 40 53-92 12-51 (83)
261 4b4t_P 26S proteasome regulato 93.6 2.6 9E-05 34.7 14.4 105 59-172 136-247 (445)
262 2dl1_A Spartin; SPG20, MIT, st 93.5 1 3.5E-05 29.7 9.5 75 54-128 16-97 (116)
263 1hxv_A Trigger factor; FKBP fo 93.4 0.056 1.9E-06 35.9 3.0 36 2-42 76-112 (113)
264 2lkn_A AH receptor-interacting 92.5 0.075 2.6E-06 37.8 2.7 20 1-20 77-97 (165)
265 1zbp_A Hypothetical protein VP 92.2 1.2 4.2E-05 34.1 9.2 62 68-144 5-66 (273)
266 3txn_A 26S proteasome regulato 91.9 2.9 9.9E-05 33.9 11.8 132 60-191 19-190 (394)
267 4b4t_R RPN7, 26S proteasome re 91.1 0.5 1.7E-05 38.8 6.6 75 111-185 133-212 (429)
268 3mkq_B Coatomer subunit alpha; 90.6 3.5 0.00012 29.4 10.0 26 61-86 35-60 (177)
269 2v6x_A Vacuolar protein sortin 90.5 0.47 1.6E-05 29.5 4.6 37 56-92 9-45 (85)
270 2crb_A Nuclear receptor bindin 90.4 2.2 7.5E-05 26.9 7.8 41 57-97 12-52 (97)
271 2cpt_A SKD1 protein, vacuolar 90.2 0.63 2.1E-05 31.0 5.2 38 55-92 13-50 (117)
272 4h7y_A Dual specificity protei 89.9 3.7 0.00013 28.7 9.0 78 63-157 64-141 (161)
273 3spa_A Mtrpol, DNA-directed RN 89.9 7 0.00024 36.0 13.1 98 62-172 129-230 (1134)
274 1wfd_A Hypothetical protein 15 89.8 0.84 2.9E-05 29.0 5.4 37 56-92 11-47 (93)
275 1wy6_A Hypothetical protein ST 89.5 2.6 9E-05 29.1 7.8 50 122-171 104-153 (172)
276 4b4t_S RPN3, 26S proteasome re 89.3 1 3.4E-05 38.0 6.9 70 108-177 230-304 (523)
277 4a5x_A MITD1, MIT domain-conta 89.0 0.9 3.1E-05 28.4 5.0 36 57-92 13-48 (86)
278 4b4t_P 26S proteasome regulato 88.7 8 0.00027 31.8 12.0 88 108-195 136-232 (445)
279 3mkq_A Coatomer beta'-subunit; 88.5 3.9 0.00013 35.6 10.5 49 67-135 659-707 (814)
280 2ff4_A Probable regulatory pro 87.6 9.7 0.00033 30.6 11.7 83 114-196 120-224 (388)
281 4fhn_B Nucleoporin NUP120; pro 85.9 1.6 5.6E-05 40.4 6.8 105 64-168 846-963 (1139)
282 1om2_A Protein (mitochondrial 85.6 4.4 0.00015 25.8 6.7 41 52-92 12-52 (95)
283 2jwx_A FKBP38NTD, FK506-bindin 84.9 0.61 2.1E-05 32.7 2.8 23 1-23 104-127 (157)
284 3eab_A Spastin; spastin, MIT, 84.8 5.3 0.00018 25.0 7.4 69 54-122 10-85 (89)
285 3ax2_A Mitochondrial import re 83.7 3.4 0.00012 24.9 5.3 38 56-93 13-50 (73)
286 3mkq_B Coatomer subunit alpha; 83.5 3.9 0.00013 29.2 6.6 47 119-170 15-61 (177)
287 3mkq_A Coatomer beta'-subunit; 83.0 4.2 0.00014 35.3 8.0 25 62-86 683-707 (814)
288 3spa_A Mtrpol, DNA-directed RN 80.3 26 0.00088 32.4 11.9 71 110-180 128-204 (1134)
289 3t5v_B Nuclear mRNA export pro 79.7 13 0.00043 30.8 9.2 102 75-176 141-254 (455)
290 3pr9_A FKBP-type peptidyl-prol 79.3 1.2 4.2E-05 31.2 2.6 21 2-22 63-84 (157)
291 3ax2_A Mitochondrial import re 78.4 8.6 0.00029 23.1 5.8 33 149-181 23-55 (73)
292 3cgm_A SLYD, peptidyl-prolyl C 76.7 2.3 8E-05 29.7 3.5 21 2-22 46-67 (158)
293 2ijq_A Hypothetical protein; s 76.2 15 0.0005 25.8 7.4 71 61-138 33-104 (161)
294 2kr7_A FKBP-type peptidyl-prol 75.7 3.8 0.00013 28.4 4.3 21 2-22 56-77 (151)
295 3kae_A CDC27, possible protein 74.0 22 0.00075 25.5 9.8 54 112-170 36-89 (242)
296 4dt4_A FKBP-type 16 kDa peptid 72.7 2.6 8.9E-05 29.9 2.9 21 2-22 74-95 (169)
297 1ix5_A FKBP; ppiase, isomerase 71.8 1.7 5.9E-05 30.1 1.8 21 2-22 64-85 (151)
298 3t5x_A PCI domain-containing p 71.5 15 0.00051 26.6 6.9 36 108-143 13-48 (203)
299 1qsa_A Protein (soluble lytic 70.6 22 0.00076 30.6 8.7 54 118-171 294-347 (618)
300 2cwy_A Hypothetical protein TT 69.9 15 0.0005 23.1 5.7 63 64-137 5-67 (94)
301 1w26_A Trigger factor, TF; cha 69.7 4.4 0.00015 33.3 4.0 38 2-44 204-242 (432)
302 2g0u_A Type III secretion syst 69.6 18 0.00061 22.7 6.1 47 158-204 31-77 (92)
303 2vkj_A TM1634; membrane protei 68.9 17 0.00056 22.8 5.5 33 57-89 50-82 (106)
304 3prb_A FKBP-type peptidyl-prol 68.9 3 0.0001 31.2 2.6 21 2-22 63-84 (231)
305 4a5x_A MITD1, MIT domain-conta 68.1 18 0.00063 22.3 6.9 27 146-172 19-45 (86)
306 2dl1_A Spartin; SPG20, MIT, st 67.5 11 0.00037 24.9 4.7 17 124-140 18-34 (116)
307 3t5x_A PCI domain-containing p 65.3 12 0.00041 27.2 5.2 35 143-177 14-48 (203)
308 4b4t_S RPN3, 26S proteasome re 65.2 11 0.00038 31.7 5.5 67 66-142 237-303 (523)
309 2ca5_A MXIH; transport protein 64.8 22 0.00074 21.9 6.3 45 160-204 27-71 (85)
310 4gq2_M Nucleoporin NUP120; bet 64.0 12 0.00042 33.9 6.1 52 115-170 816-867 (950)
311 3lpz_A GET4 (YOR164C homolog); 63.8 52 0.0018 25.9 14.0 26 141-166 134-159 (336)
312 2cfu_A SDSA1; SDS-hydrolase, l 62.5 27 0.00094 30.2 7.8 50 144-193 450-499 (658)
313 2rpa_A Katanin P60 ATPase-cont 61.9 24 0.00082 21.4 7.4 48 146-193 15-68 (78)
314 2k8i_A SLYD, peptidyl-prolyl C 60.9 5.1 0.00017 28.4 2.4 21 2-22 51-72 (171)
315 2cfu_A SDSA1; SDS-hydrolase, l 60.8 15 0.0005 31.9 5.8 48 111-158 451-498 (658)
316 2w2u_A Hypothetical P60 katani 60.6 26 0.00089 21.4 6.3 16 154-169 30-45 (83)
317 1om2_A Protein (mitochondrial 60.4 13 0.00045 23.5 4.0 29 113-141 24-52 (95)
318 4aez_C MAD3, mitotic spindle c 59.1 52 0.0018 24.3 9.1 47 127-173 132-180 (223)
319 2wpv_A GET4, UPF0363 protein Y 58.6 63 0.0022 25.2 13.2 27 141-167 132-158 (312)
320 4gq2_M Nucleoporin NUP120; bet 57.9 65 0.0022 29.2 9.7 25 64-88 844-868 (950)
321 2kfw_A FKBP-type peptidyl-prol 56.9 6.5 0.00022 28.5 2.4 21 2-22 51-72 (196)
322 2ymb_A MITD1, MIT domain-conta 55.3 2.5 8.5E-05 32.1 0.0 43 52-94 15-57 (257)
323 2br9_A 14-3-3E, 14-3-3 protein 54.1 43 0.0015 24.9 6.6 53 77-136 147-200 (234)
324 4fhn_B Nucleoporin NUP120; pro 54.1 19 0.00064 33.4 5.6 53 114-170 817-869 (1139)
325 3myv_A SUSD superfamily protei 53.5 23 0.00077 29.1 5.5 30 108-137 189-218 (454)
326 2jpu_A ORF C02003 protein; sol 53.5 23 0.0008 23.7 4.6 31 59-89 6-36 (129)
327 3myv_A SUSD superfamily protei 52.7 38 0.0013 27.7 6.8 47 125-171 164-218 (454)
328 2v6y_A AAA family ATPase, P60 52.3 37 0.0013 20.6 6.6 23 113-135 15-37 (83)
329 2npu_A FKBP12-rapamycin comple 51.7 48 0.0016 22.1 5.9 82 106-190 37-123 (126)
330 4abx_A DNA repair protein RECN 51.4 27 0.00092 24.6 5.0 63 126-194 73-135 (175)
331 2npm_A 14-3-3 domain containin 51.3 77 0.0026 24.0 7.7 53 77-137 173-226 (260)
332 3kez_A Putative sugar binding 50.8 26 0.0009 28.7 5.5 30 108-137 195-224 (461)
333 2xze_A STAM-binding protein; h 49.9 56 0.0019 22.3 6.2 40 51-90 31-70 (146)
334 4a1g_A Mitotic checkpoint seri 49.4 62 0.0021 22.3 9.3 82 80-173 48-131 (152)
335 3mcx_A SUSD superfamily protei 49.1 51 0.0017 27.1 7.0 48 125-172 176-231 (477)
336 3re2_A Predicted protein; meni 48.8 1E+02 0.0036 24.8 8.9 52 139-190 292-349 (472)
337 3kez_A Putative sugar binding 48.4 45 0.0015 27.3 6.5 47 125-171 170-224 (461)
338 3snx_A SUSD homolog, putative 47.7 60 0.002 26.6 7.2 30 108-137 190-219 (460)
339 2o8p_A 14-3-3 domain containin 47.7 43 0.0015 24.8 5.6 71 60-137 120-196 (227)
340 3lew_A SUSD-like carbohydrate 47.1 60 0.002 26.9 7.2 31 108-138 202-232 (495)
341 1o9d_A 14-3-3-like protein C; 46.9 64 0.0022 24.4 6.6 53 77-136 152-205 (260)
342 3ubw_A 14-3-3E, 14-3-3 protein 46.9 65 0.0022 24.4 6.6 53 77-136 173-226 (261)
343 3hdx_A SUSD homolog, SUSD supe 46.8 58 0.002 26.7 7.0 31 108-138 196-226 (478)
344 3uzd_A 14-3-3 protein gamma; s 46.7 66 0.0023 24.2 6.6 53 77-136 148-201 (248)
345 2ijq_A Hypothetical protein; s 46.2 72 0.0025 22.2 8.0 60 113-172 36-104 (161)
346 3lew_A SUSD-like carbohydrate 46.2 55 0.0019 27.1 6.8 48 125-172 174-232 (495)
347 2oo2_A Hypothetical protein AF 45.4 52 0.0018 20.3 6.0 38 53-90 28-65 (86)
348 3mcx_A SUSD superfamily protei 45.1 28 0.00096 28.6 4.9 31 108-138 201-231 (477)
349 3iqu_A 14-3-3 protein sigma; s 44.0 75 0.0025 23.7 6.5 54 76-136 149-203 (236)
350 2pmr_A Uncharacterized protein 43.2 57 0.002 20.2 6.1 38 52-89 31-68 (87)
351 1wfd_A Hypothetical protein 15 42.9 59 0.002 20.2 7.0 14 155-168 27-40 (93)
352 2rpa_A Katanin P60 ATPase-cont 42.5 55 0.0019 19.8 7.4 30 63-92 15-44 (78)
353 3u84_A Menin; MLL, JUND, ledgf 42.0 1.1E+02 0.0037 25.2 7.4 63 128-190 298-371 (550)
354 3qnk_A Putative lipoprotein; a 42.0 75 0.0026 26.4 7.0 58 77-138 154-211 (517)
355 3efz_A 14-3-3 protein; 14-3-3, 37.2 76 0.0026 24.2 5.7 54 77-137 169-225 (268)
356 3t5v_B Nuclear mRNA export pro 37.2 91 0.0031 25.7 6.6 70 65-142 181-254 (455)
357 3i4g_A SUSD-like carbohydrate 37.0 1E+02 0.0035 25.7 7.1 31 108-138 197-227 (528)
358 2zan_A Vacuolar protein sortin 36.4 7.4 0.00025 31.9 0.0 37 57-93 8-44 (444)
359 3jq1_A SUSD superfamily protei 35.9 80 0.0028 26.0 6.2 30 108-137 179-208 (481)
360 2a9u_A Ubiquitin carboxyl-term 35.3 93 0.0032 21.2 5.4 40 51-90 33-72 (144)
361 1t11_A Trigger factor, TF; hel 35.1 16 0.00056 29.4 1.8 38 2-44 207-245 (392)
362 3b7x_A FK506-binding protein 6 34.4 17 0.00058 24.3 1.6 16 2-17 91-106 (134)
363 1o3u_A Conserved hypothetical 33.9 99 0.0034 20.4 5.4 34 56-89 12-45 (135)
364 2v6x_A Vacuolar protein sortin 33.6 80 0.0027 19.0 7.0 17 154-170 24-40 (85)
365 3qnk_A Putative lipoprotein; a 33.4 2.1E+02 0.007 23.7 11.7 48 125-172 153-211 (517)
366 3bu8_A Telomeric repeat-bindin 32.9 1.3E+02 0.0045 22.2 6.1 44 114-157 119-162 (235)
367 3snx_A SUSD homolog, putative 32.7 88 0.003 25.6 5.9 30 143-172 191-220 (460)
368 3re2_A Predicted protein; meni 32.2 73 0.0025 25.7 5.0 49 79-137 276-324 (472)
369 3hdx_A SUSD homolog, SUSD supe 31.3 1.2E+02 0.004 24.9 6.5 30 143-172 197-226 (478)
370 1ufb_A TT1696 protein; structu 31.3 1.1E+02 0.0036 19.8 5.9 36 54-89 5-40 (127)
371 1wol_A ST0689, 122AA long cons 31.2 1.1E+02 0.0036 19.7 6.1 36 54-89 5-40 (122)
372 2yhe_A SEC-alkyl sulfatase; hy 36.4 11 0.00037 32.9 0.0 51 111-161 463-513 (668)
373 2yin_A DOCK2, dedicator of cyt 30.1 1.5E+02 0.0051 24.2 6.8 75 64-138 39-121 (436)
374 3u84_A Menin; MLL, JUND, ledgf 29.3 85 0.0029 25.8 5.0 49 79-137 298-346 (550)
375 1ccd_A Clara cell 17 KD protei 28.9 96 0.0033 18.5 4.7 44 164-207 21-64 (77)
376 3esl_A Checkpoint serine/threo 28.7 1.7E+02 0.0057 21.2 13.1 86 81-173 58-145 (202)
377 2rkl_A Vacuolar protein sortin 28.0 82 0.0028 17.5 6.0 39 53-91 13-51 (53)
378 2e2a_A Protein (enzyme IIA); h 27.6 1.2E+02 0.0041 19.4 4.6 33 58-90 18-50 (105)
379 3jq1_A SUSD superfamily protei 27.0 90 0.0031 25.7 5.1 47 125-171 154-208 (481)
380 2vkj_A TM1634; membrane protei 27.0 1.2E+02 0.004 18.9 6.6 30 143-172 53-82 (106)
381 2p58_C Putative type III secre 27.0 92 0.0031 20.1 3.9 51 112-167 43-93 (116)
382 1wcr_A PTS system, N, N'-diace 26.9 1.3E+02 0.0043 19.2 4.6 33 58-90 16-48 (103)
383 3otn_A SUSD superfamily protei 26.9 2.6E+02 0.0089 22.8 9.7 47 125-171 160-225 (482)
384 3bqo_A Telomeric repeat-bindin 26.9 1.3E+02 0.0045 21.8 5.2 45 112-156 120-164 (211)
385 1utg_A Uteroglobin; steroid bi 26.8 92 0.0032 18.2 3.8 44 164-207 19-62 (70)
386 3bu8_A Telomeric repeat-bindin 25.9 80 0.0028 23.3 3.9 64 125-188 88-159 (235)
387 2crb_A Nuclear receptor bindin 25.7 1.3E+02 0.0044 18.9 9.4 22 112-133 18-39 (97)
388 3qtm_A Uncharacterized protein 25.7 81 0.0028 24.2 4.0 104 52-156 14-132 (346)
389 3fap_B FRAP, FKBP12-rapamycin 25.5 1.3E+02 0.0044 18.8 6.2 63 107-172 8-73 (94)
390 2yhe_A SEC-alkyl sulfatase; hy 31.3 15 0.00051 32.0 0.0 51 144-194 462-512 (668)
391 3k1s_A PTS system, cellobiose- 24.3 1.5E+02 0.005 19.1 4.6 34 57-90 19-52 (109)
392 4gq4_A Menin; tumor suppressor 23.8 1.2E+02 0.0042 24.8 5.0 26 111-136 305-330 (489)
393 2wb7_A PT26-6P; extra chromoso 23.4 3.3E+02 0.011 22.8 9.1 34 125-158 455-489 (526)
394 2uwj_G Type III export protein 23.3 89 0.003 20.1 3.3 52 112-168 42-93 (115)
395 3bqo_A Telomeric repeat-bindin 23.2 43 0.0015 24.3 2.1 36 151-186 125-160 (211)
396 4gq4_A Menin; tumor suppressor 22.7 3.2E+02 0.011 22.5 9.8 52 139-190 299-356 (489)
397 3r9m_A BRO1 domain-containing 22.6 2.4E+02 0.0083 22.3 6.7 26 144-169 254-279 (376)
398 3l8r_A PTCA, putative PTS syst 21.9 1.7E+02 0.0058 19.2 4.6 33 58-90 35-67 (120)
399 3i4g_A SUSD-like carbohydrate 21.7 2E+02 0.0069 23.9 6.3 48 125-172 167-227 (528)
400 3msv_A Nuclear import adaptor, 20.9 1.2E+02 0.0042 23.6 4.2 67 125-191 148-214 (393)
No 1
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.98 E-value=9.9e-30 Score=205.51 Aligned_cols=208 Identities=32% Similarity=0.556 Sum_probs=197.8
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcC-CCCCCceEEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHH
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSE-LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWR 78 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~-~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~ 78 (209)
..|++||.+.++|.|.+ ||..|... .||+++.+.|.++|..+..+...+..........+..+...|+.++..|+|++
T Consensus 86 ~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~ 165 (336)
T 1p5q_A 86 QRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQ 165 (336)
T ss_dssp TTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 36999999999999999 99999665 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCC
Q 028428 79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE 158 (209)
Q Consensus 79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 158 (209)
|+..|.+|+.+.|.......+......+....+|.++|.|+..+|+|++|+..|+++++++|++..+++++|.+|..+|+
T Consensus 166 A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 245 (336)
T 1p5q_A 166 ALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245 (336)
T ss_dssp HHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999998877666777788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028428 159 LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208 (209)
Q Consensus 159 ~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 208 (209)
+++|+.+|+++++++|++..+...+..+...+++..++++..|++||+.+
T Consensus 246 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999865
No 2
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.97 E-value=2.2e-29 Score=211.26 Aligned_cols=208 Identities=32% Similarity=0.554 Sum_probs=191.3
Q ss_pred CCCCCccEEEEEeCccc-ccccCC-cCCCCCCceEEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHH
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEV-SELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWR 78 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~-~~~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~ 78 (209)
..|++||.+.+.+.|.| |+..|. ...||+++.+.|.+++..+.++...+..........+..++..|+.+++.|+|.+
T Consensus 207 ~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~ 286 (457)
T 1kt0_A 207 EKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQ 286 (457)
T ss_dssp TTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 36999999999999999 999995 3479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCC
Q 028428 79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE 158 (209)
Q Consensus 79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 158 (209)
|+..|.+|+.+.|..+.+..+...........+|+|+|.||+++|+|++|+.+|++++.++|++.++++++|.+|..+|+
T Consensus 287 A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~ 366 (457)
T 1kt0_A 287 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE 366 (457)
T ss_dssp HHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC
Confidence 99999999999998877777777888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028428 159 LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208 (209)
Q Consensus 159 ~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 208 (209)
+++|+.+|+++++++|++..+...+..+...+++..++++..|++||+++
T Consensus 367 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~ 416 (457)
T 1kt0_A 367 FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF 416 (457)
T ss_dssp HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999875
No 3
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.96 E-value=1.1e-28 Score=199.55 Aligned_cols=206 Identities=29% Similarity=0.426 Sum_probs=149.8
Q ss_pred CCCCccEEEEEeCccc-ccccCC--cCCCCCCceEEEEEEEcccccCC---CCCCCCHHHHHHHHHHHHHHhHHHHHcCC
Q 028428 2 TMKKEEQATVTISAEY-LCSHEV--SELVSADSVLHYEVTLIDFTKEK---PFWKMDTHEKIEACERKKHDGNLLFRAGK 75 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~~--~~~ip~~~~l~~~~~l~~~~~~~---~~~~~~~~~~~~~a~~~~~~g~~~~~~~~ 75 (209)
.|++||++.|+|.+++ ||..|. .+.||+++.+.|.+.|..+.... ..+.++..++...+..++..|+.++..|+
T Consensus 115 ~m~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~ 194 (338)
T 2if4_A 115 SMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194 (338)
T ss_dssp HCCBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSC
T ss_pred cCCCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5999999999999999 999986 47899999999999999887543 46778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028428 76 YWRASKKYEKAAKIIEFHHSF--TDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH 153 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 153 (209)
|++|+..|.+|+.+.|....+ ..........+...+|+++|.|++.+|+|++|+.+|++++.++|++.++++++|.+|
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~ 274 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK 274 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999987764311 111122334445568999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028428 154 LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 207 (209)
Q Consensus 154 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 207 (209)
..+|++++|+.+|+++++++|+++.+...+..+........++.+..|++||+.
T Consensus 275 ~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 275 AELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999888888888889999999875
No 4
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.93 E-value=2.7e-25 Score=160.85 Aligned_cols=154 Identities=25% Similarity=0.349 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHH
Q 028428 53 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH---SFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 129 (209)
Q Consensus 53 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 129 (209)
.+++...+..++..|+.+++.|+|+.|+..|.+++.+.+... ....+++....+....+|.++|.||+.+|+|++|+
T Consensus 4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 346677899999999999999999999999999999866432 22335566677888999999999999999999999
Q ss_pred HHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028428 130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR-VVKLVYMELKDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 206 (209)
.+|++++.++|.++++++++|.+|..+|++++|+.+|+++++++|+++ .+...+..+...+++..++++..|++||+
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 161 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998 88999999999999999999999999996
No 5
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.90 E-value=3.1e-22 Score=149.28 Aligned_cols=175 Identities=27% Similarity=0.377 Sum_probs=139.9
Q ss_pred EEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHH
Q 028428 33 LHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSC 111 (209)
Q Consensus 33 l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~ 111 (209)
......+..+.++.+.|.++..+....+..+...|..++..|+|++|+..|.+++.+.|..+..... .......+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 3444567788889999999999999999999999999999999999999999999998876644322 223334455688
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+.++|.|+..+|+|++|+..+.+++.++|++..+++++|.+|..+|++++|+..|+++++++|+++.+...+..+...++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhc
Q 028428 192 EYAKYQAEIFGTMLSK 207 (209)
Q Consensus 192 ~~~~~~~~~~~~~~~~ 207 (209)
+..+.++..|++||+.
T Consensus 171 ~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 171 EARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHC------------
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999974
No 6
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.90 E-value=1.8e-22 Score=140.65 Aligned_cols=115 Identities=26% Similarity=0.381 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
+..+..+++.|+.+++.|+|++|+..|++++.+.|..+ .+|.++|.|+..+|++++|+..+++++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA---------------ILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 35688899999999999999999999999999977653 479999999999999999999999999
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028428 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+...+..|
T Consensus 75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888776
No 7
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.88 E-value=5.9e-22 Score=142.24 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
....+..++..|+.++..|+|++|+..|++||++.|+.+... .....+....+|+|+|.++.++|+|++|+..|+++
T Consensus 7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 355788899999999999999999999999999999854311 01112334559999999999999999999999999
Q ss_pred hhh-------CCCchHHH----HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028428 136 LEL-------EPLNVKAL----YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 136 l~~-------~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
|++ +|++.++| +++|.++..+|++++|+.+|+++++++|++..+...+..+++.++....+
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k 155 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ 155 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999 99999999999999999999999999999999999999998888776543
No 8
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.85 E-value=4e-20 Score=151.14 Aligned_cols=155 Identities=30% Similarity=0.501 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028428 52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 130 (209)
Q Consensus 52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 130 (209)
+.+.....+..++..|+.++..|+|++|+..|.+|+.+.+..+. ...+......+....+|.++|.|++.+|+|++|+.
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 46778888999999999999999999999999999997665320 11122233556778899999999999999999999
Q ss_pred HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028428 131 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 206 (209)
+|+++++++|++.++++++|.+|..+|++++|+.+|+++++++|++..+...+..+...+++..++++..|++||+
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~ 370 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
No 9
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.8e-19 Score=122.88 Aligned_cols=117 Identities=25% Similarity=0.350 Sum_probs=109.3
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|+|++|+..|.+++.+.|..+ .++.++|.++..+|++++|+..+.+++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999977643 47999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~------p~~~~~~~~l~~l~~~~ 190 (209)
+|+++.+++++|.++..+|++++|+..|+++++++ |+++.+...+..+...+
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 99999999988887653
No 10
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.81 E-value=2.7e-19 Score=124.51 Aligned_cols=114 Identities=24% Similarity=0.305 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+++.|+.+++.|+|++|+.+|.+||.+.|.. ..+|.++|.||+.+|+|++|+.++.+++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------------~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------------ITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4567889999999999999999999999999997764 3479999999999999999999999999
Q ss_pred hhCCCc-------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028428 137 ELEPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 137 ~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+++|.+ ..+++++|.++..+|++++|+.+|++++...|+ ++....+..+
T Consensus 70 ~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 998876 358999999999999999999999999999885 6665555544
No 11
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.78 E-value=3.6e-18 Score=123.41 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=112.0
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|+|++|+..|.+++.+.|.. ..++.++|.++..+|+|++|+..+.+++.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------PIYLSNRAAAYSASGQHEKAAEDAELATV 73 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 457788999999999999999999999999997764 34799999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV--VKLVYMELKDKQREYAK 195 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~--~~~~l~~l~~~~~~~~~ 195 (209)
++|++..+++++|.+|..+|++++|+.+|+++++++|++.. ....+..++.++++...
T Consensus 74 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999876 67777777777766544
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=4.6e-18 Score=121.96 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..++..|+|++|+..|.+++.+.|.++ .+|.++|.|+..+|+|++|+..|.+++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~---------------~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV---------------DYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44567789999999999999999999999999977654 479999999999999999999999999
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028428 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
.++|+++.+++++|.||..+|++++|+..|++++++.|+++
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999865
No 13
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.77 E-value=8.2e-18 Score=118.87 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=111.7
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|+|++|+..|.+++...|.++ .+|.++|.++..+|++++|+..+.+++.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---------------RYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456778999999999999999999999999877653 4799999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........+...++...++
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988877777777777665543
No 14
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.77 E-value=7.9e-18 Score=120.16 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=108.5
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|+|++|+..|.+++...|.++ .++.++|.++..+|+|++|+..|.+++.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS---------------RFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3466788999999999999999999999999877654 4789999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
++|+++.+++++|.+|..+|++++|+..|+++++++|+++........+...++....
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988776666666665555443
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=7.2e-18 Score=120.54 Aligned_cols=116 Identities=15% Similarity=0.064 Sum_probs=103.7
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
.....+...|..++..|+|++|+..|.+++.+.|.++ .+|.++|.++..+|++++|+..+.++++
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP---------------KAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3455677899999999999999999999999977654 4799999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQAHLKTSELEKAEAD-IKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~-~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
++|+++.+++++|.+|..+|++++|... ++++++++|+++.+......+..
T Consensus 94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999876655 69999999999999887777654
No 16
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.75 E-value=1.9e-17 Score=115.34 Aligned_cols=121 Identities=26% Similarity=0.344 Sum_probs=110.6
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|+|+.|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++.++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999999987664 3479999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN-----NRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-----~~~~~~~l~~l~~~~~~~~~ 195 (209)
|+++.+++.+|.++..+|++++|+..|++++.++|+ +..+...+..+........+
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 78888888888776655443
No 17
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=2e-16 Score=118.82 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=107.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
+..+...|..++..|++++|+..|.+++...|..+..... ...........+..++|.++..+|++++|+..+.+++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5567889999999999999999999999998764321000 000000011112233999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+..+.-...
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998875443
No 18
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.72 E-value=1.2e-17 Score=119.46 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=102.2
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH
Q 028428 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 145 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 145 (209)
.|..+..+|++++|+..|.+++...|..+. .++++|.+|+.+|+|++|+..+.++++++|+++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a 67 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSI---------------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA 67 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHT---------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 577778889999999999999998776544 58999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028428 146 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
++.+|.+|..+|++++|+..|+++++++|+++.+...+..+....++..
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence 9999999999999999999999999999999999999999887776543
No 19
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.71 E-value=3.5e-16 Score=105.26 Aligned_cols=115 Identities=23% Similarity=0.224 Sum_probs=106.5
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+..+.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999987654 347999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
+|.+..+++.+|.++..+|++++|...++++++++|+++.+...+..+..
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999888887754
No 20
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.71 E-value=1.4e-17 Score=139.49 Aligned_cols=203 Identities=16% Similarity=0.122 Sum_probs=139.6
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccccCCCC---------------CCCCHH-HH-------
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTKEKPF---------------WKMDTH-EK------- 56 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~~~~~---------------~~~~~~-~~------- 56 (209)
..|++||+..|+|.|++ ||..|.++.||+++++.|+|+|+.+...... +..... ..
T Consensus 95 ~~m~~Ge~~~~~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g 174 (457)
T 1kt0_A 95 ATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEG 174 (457)
T ss_dssp TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEE
T ss_pred hhCCCCCEEEEEEChHHhccccCCCCCCCCCCcEEEEEeeceeecccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEE
Confidence 37999999999999999 9999998999999999999999987542110 000000 00
Q ss_pred -H-----HH--HHHHHHHhHHHHHcCCHHHHHHHHHH----HHHHHhhcCC---------CC------------------
Q 028428 57 -I-----EA--CERKKHDGNLLFRAGKYWRASKKYEK----AAKIIEFHHS---------FT------------------ 97 (209)
Q Consensus 57 -~-----~~--a~~~~~~g~~~~~~~~~~~A~~~y~~----al~~~~~~~~---------~~------------------ 97 (209)
. .. ..-....|....--..++.|+..+++ +|.+.|...- .+
T Consensus 175 ~~~g~~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~ 254 (457)
T 1kt0_A 175 RCGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK 254 (457)
T ss_dssp EETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred EeCCeEEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence 0 00 00000000000001134444444443 2322221000 00
Q ss_pred --hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---------------hHHHHHHHHHHhccCCHH
Q 028428 98 --DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---------------VKALYRRSQAHLKTSELE 160 (209)
Q Consensus 98 --~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~ 160 (209)
-+...........++.++|.++++.|+|++|+..|.+++.++|.+ ..+++++|.||..+|+++
T Consensus 255 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 334 (457)
T 1kt0_A 255 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334 (457)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 011123345567789999999999999999999999999999998 699999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 161 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 161 ~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+|+.+|+++++++|++..++..+..+...+.++.+.. ..|.+.
T Consensus 335 ~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~-~~~~~a 377 (457)
T 1kt0_A 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK-GDFEKV 377 (457)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence 9999999999999999999999999998887777653 345444
No 21
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.70 E-value=2.9e-16 Score=138.16 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=90.2
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|+.+...|++++|+..|.+|+++.|+. ..+++++|.++..+|++++|+..|+++++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---------------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---------------AAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446777888888888888888888888888876653 23567777777777777777777777777
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
++|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+++..+.
T Consensus 72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA 130 (723)
T 4gyw_A 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777777777777777777777777777777777776666665554
No 22
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.69 E-value=1e-15 Score=104.67 Aligned_cols=122 Identities=27% Similarity=0.293 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028428 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
.....+..+...|..++..|+++.|+..|.+++...|.. ..++.++|.++...|++++|+..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 71 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------AVYFCNRAAAYSKLGNYAGAVQDCER 71 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 345667889999999999999999999999999986653 34799999999999999999999999
Q ss_pred HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
++..+|.+..+++.+|.++..+|++++|+..++++++++|+++.+...+..+...++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988888876654
No 23
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.69 E-value=5.2e-15 Score=105.74 Aligned_cols=119 Identities=24% Similarity=0.351 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028428 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 133 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 133 (209)
......+..+...|..++..|+++.|+..|.+++...|.. ..++.++|.++..+|++++|+..+.
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~ 71 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDAT 71 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567788999999999999999999999999999986654 3479999999999999999999999
Q ss_pred HHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 134 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 134 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
+++.++|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+.
T Consensus 72 ~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 125 (166)
T 1a17_A 72 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 125 (166)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998886666653
No 24
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.68 E-value=2.4e-15 Score=103.45 Aligned_cols=116 Identities=9% Similarity=0.077 Sum_probs=104.6
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|..++..|+|++|+..|.+++...|..+. ...++.++|.++..+|++++|+..+.+++..+|+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3568899999999999999999999998776542 2357899999999999999999999999999999
Q ss_pred c---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 142 N---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 142 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
+ +.+++.+|.++..+|++++|+..|++++...|+++.+......+...
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9 88999999999999999999999999999999999888877776553
No 25
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.68 E-value=2.3e-16 Score=108.71 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=89.4
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+...|..++..|++++|+..|.+++...|... .++.++|.++..+|++++|+..+.+++.++|++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE---------------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999999977653 479999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028428 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 178 (209)
..+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999999999999999998754
No 26
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.67 E-value=1.8e-15 Score=114.38 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=109.2
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHh-hcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIE-FHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
..+...|..++..|+|++|+..|.+++.+.| .+ ..++.++|.++..+|++++|+..+.+++..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999876 32 2467889999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
|.+..+++.+|.+|..+|++++|+..|+++++++|+++. +...+..+....++..+... .|.+.
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~a 143 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHA 143 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999994 46666666655555554422 44443
No 27
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.67 E-value=1.4e-15 Score=104.20 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=108.0
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|+++.|+..|.+++...|.. ..++.++|.++...|++++|+..+.+++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 46778899999999999999999999999986553 347899999999999999999999999999
Q ss_pred CCCc-------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028428 139 EPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 139 ~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
.|.+ ..+++.+|.++..+|++++|...|++++++.| ++.....+..+...+++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 8877 89999999999999999999999999999999 6888888888887776543
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=5.9e-16 Score=116.97 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=63.0
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-----------cCHHHHHHH
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----------EDYSETSSL 131 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~ 131 (209)
+...|..+...|++++|+..|.+++.+.|.. ..++.++|.++..+ |++++|+..
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVARTPRY---------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence 4444444444444444444444444443332 22455555555555 555555555
Q ss_pred HHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028428 132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 132 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+.++++++|++..+++.+|.++..+|++++|+..|+++++++ +++.+...+..+....++..+.
T Consensus 107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555555555555555555555555555555 5555555555555555544443
No 29
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.67 E-value=9.2e-16 Score=105.59 Aligned_cols=116 Identities=27% Similarity=0.317 Sum_probs=106.8
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
....+...|..++..|++++|+..|.+++...|.. ..++.++|.++...|++++|+..+.+++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 36678899999999999999999999999986653 347999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
+|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+...
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888887654
No 30
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-15 Score=106.62 Aligned_cols=117 Identities=34% Similarity=0.505 Sum_probs=106.4
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|+|++|+..|.+++...|.. .....++.++|.++..+|++++|+..+.+++.++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 5667899999999999999999999999976542 2235689999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+..
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888877753
No 31
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=1.1e-15 Score=134.43 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=113.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..+...|++++|+..|.+|+++.|+. ..+|+++|.++..+|++++|+..|+++++++
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~ 107 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999999997764 3589999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+.+..+.
T Consensus 108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999999999999999999999999999999998877655443
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=5.8e-15 Score=111.51 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=79.7
Q ss_pred HHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028428 105 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 184 (209)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 184 (209)
.+....++.++|.++..+|++++|+..+.++++++ +++.+++.+|.++..+|++++|+..|+++++++|+++.+...+.
T Consensus 114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 192 (217)
T 2pl2_A 114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192 (217)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 44556789999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028428 185 ELKDKQREYAKY 196 (209)
Q Consensus 185 ~l~~~~~~~~~~ 196 (209)
.+....++..+.
T Consensus 193 ~~~~~~g~~~~A 204 (217)
T 2pl2_A 193 SALLLKGKAEEA 204 (217)
T ss_dssp HHHTC-------
T ss_pred HHHHHccCHHHH
Confidence 998877776654
No 33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=6.2e-15 Score=107.76 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=112.8
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHH-------HHHHHHHHHHHHhHHHHHH
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDE-------KHQANGLRLSCYLNNAACK 119 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~a~~~ 119 (209)
.+..+...|..++..|+|++|+..|.+++++.|.++... .++ .....+....++.++|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 356678899999999999999999999999877643211 000 0111122344667777777
Q ss_pred HhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028428 120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAE 199 (209)
Q Consensus 120 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 199 (209)
...++++.|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|+++.+...+..+...+++..+...
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~- 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK- 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH-
Confidence 7788888888888888888888999999999999999999999999999999999999999999999988888776643
Q ss_pred HHHhhh
Q 028428 200 IFGTML 205 (209)
Q Consensus 200 ~~~~~~ 205 (209)
.|.+.+
T Consensus 163 ~~~~al 168 (184)
T 3vtx_A 163 YFKKAL 168 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=2.8e-15 Score=122.90 Aligned_cols=120 Identities=14% Similarity=-0.002 Sum_probs=69.9
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC-HHHHHHHHHHHh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-YSETSSLCTKVL 136 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al 136 (209)
..+..+...|..+...|++++|+..|.++|.+.|... .+|+++|.++..+|+ +++|+..+++++
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~---------------~a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY---------------TVWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH---------------HHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 3455566677777777777777777777777765532 245555555555554 555555555555
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028428 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
.++|++..+|+++|.++..+|++++|+..|+++++++|++..++..+..+...++.
T Consensus 160 ~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 160 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC
Confidence 55555555555555555555555555555555555555555555555555544443
No 35
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.62 E-value=3.1e-14 Score=96.38 Aligned_cols=115 Identities=30% Similarity=0.374 Sum_probs=105.4
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|+++.|+..|.+++...|.. ..++.++|.++...|++++|+..+.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 5667889999999999999999999999986543 3478999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
|.+..+++.+|.++...|++++|...+++++.++|+++.+...+..+...
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888877653
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=7.3e-15 Score=120.41 Aligned_cols=115 Identities=12% Similarity=-0.023 Sum_probs=108.0
Q ss_pred HHHHHHHhHHHHHcCC-HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 60 CERKKHDGNLLFRAGK-YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
+..+..+|..+...|+ +++|+..|.+++.+.|... .+|+++|.++..+|++++|+..|++++.+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~---------------~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY---------------QVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5568899999999997 9999999999999977653 48999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
+|++..+|+++|.++..+|++++|+.+|+++++++|++..++..+..+...
T Consensus 196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877
No 37
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.61 E-value=3.1e-15 Score=107.04 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=93.5
Q ss_pred HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCH----------HHHHHHHHHHhhhCCC
Q 028428 72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY----------SETSSLCTKVLELEPL 141 (209)
Q Consensus 72 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~ 141 (209)
+.+.|++|+..|.+++.+.|.+. .+|+++|.++..++++ ++|+..|+++|+++|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~a---------------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~ 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDA---------------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhHHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence 44678999999999999987754 4799999999999876 5999999999999999
Q ss_pred chHHHHHHHHHHhccC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 142 NVKALYRRSQAHLKTS-----------ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+..+|+++|.+|..+| ++++|+.+|++|++++|++....+.+..+.+.-+
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~e 139 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ 139 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHh
Confidence 9999999999999985 8999999999999999999988888877665443
No 38
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.60 E-value=1.7e-15 Score=103.29 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=86.5
Q ss_pred HcCCHHHHHHHHHHHHHH---HhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHH
Q 028428 72 RAGKYWRASKKYEKAAKI---IEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR 148 (209)
Q Consensus 72 ~~~~~~~A~~~y~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 148 (209)
..|++++|+..|.+++.+ .|. ...++.++|.++..+|+|++|+..+.++++++|+++.+++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD---------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 358899999999999997 344 35689999999999999999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028428 149 RSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 149 ~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+|.++..+|++++|+..+++++...|+++.+......+
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999999999999999999998876544443
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=4.6e-14 Score=103.06 Aligned_cols=119 Identities=13% Similarity=0.038 Sum_probs=94.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHH-------HHHHHHHHHHHHhHHHHHHH
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDE-------KHQANGLRLSCYLNNAACKL 120 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~a~~~~ 120 (209)
+..+...|..++..|++++|+..+.+++...+...... .+. .....+....++..+|.++.
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 44566778888888888888888888777655432111 000 01122233567899999999
Q ss_pred hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028428 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 178 (209)
.+|++++|+..++++++++|.++.+++++|.+|..+|++++|+..|+++++++|+++.
T Consensus 119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999999999999999999999999999999997643
No 40
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=1.3e-14 Score=114.00 Aligned_cols=102 Identities=28% Similarity=0.416 Sum_probs=95.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|+|++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4577899999999999999999999999987654 3579999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
|++..+++++|.+|..+|++++|+..|+++++++|++
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999876
No 41
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.59 E-value=3.1e-14 Score=106.74 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=92.9
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH
Q 028428 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 145 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 145 (209)
.|..++..|++++|+..|.+++.+.|.+. .++.++|.++..+|++++|+..|+++++++|+++.+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNV---------------DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999977653 479999999999999999999999999999999988
Q ss_pred HHHHHHHHhc-----------------------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 146 LYRRSQAHLK-----------------------------------TSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 146 ~~~~a~~~~~-----------------------------------~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
++.+|.+|+. +|++++|+.+|+++++++|+ ..+...+.++..
T Consensus 125 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~i~~ 201 (208)
T 3urz_A 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILR 201 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 8888877643 34688999999999999996 445556666643
No 42
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.58 E-value=7.2e-14 Score=101.57 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=103.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHH-HHhhcCH--HHHHHHHHHHh
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-KLKLEDY--SETSSLCTKVL 136 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al 136 (209)
+..+...|..++..|++++|+..|.+++.+.|..+ .++.++|.+ +...|++ ++|+..+.+++
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---------------ELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45688999999999999999999999999987643 478999999 8899999 99999999999
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
..+|.+..+++.+|.++..+|++++|+..|+++++++|++......+..+...
T Consensus 109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~~ 161 (177)
T 2e2e_A 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMA 161 (177)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987666655555443
No 43
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.58 E-value=2.4e-14 Score=99.20 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=90.1
Q ss_pred HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028428 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185 (209)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 185 (209)
+..+..+.++|.++++.|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+.+|+++++++|++..+...+..
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 028428 186 LKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~ 205 (209)
+...++++.+... .|.+.+
T Consensus 90 ~~~~~~~~~~A~~-~~~~al 108 (126)
T 4gco_A 90 CLVAMREWSKAQR-AYEDAL 108 (126)
T ss_dssp HHHHTTCHHHHHH-HHHHHH
T ss_pred HHHHCCCHHHHHH-HHHHHH
Confidence 9999888876643 555543
No 44
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=3.6e-14 Score=107.19 Aligned_cols=118 Identities=17% Similarity=0.101 Sum_probs=107.4
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
..+...|..++..|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++.++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 455669999999999999999999999986653 45799999999999999999999999999999
Q ss_pred Cch-------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHH
Q 028428 141 LNV-------KALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREY 193 (209)
Q Consensus 141 ~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~~~~~~ 193 (209)
++. .+++.+|.++..+|++++|+..|+++++++|+ +..+...+..+.......
T Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 998 67999999999999999999999999999999 899999999888766554
No 45
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.56 E-value=6.2e-14 Score=104.52 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=111.5
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|+|++|+..|.+++. +. ..++.++|.++..+|++++|+..+.+++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD-----PH-------------SRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----CC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----CC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456678999999999999999999999852 11 35899999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR----------------VVKLVYMELKDKQREYAKYQAEIF 201 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~----------------~~~~~l~~l~~~~~~~~~~~~~~~ 201 (209)
++|.+..+++++|.++..+|++++|+..|++++++.|.+. .+...+..+...+++..+... .|
T Consensus 66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~ 144 (213)
T 1hh8_A 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QL 144 (213)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HH
Confidence 9999999999999999999999999999999999988877 888999998888777765533 44
Q ss_pred Hhh
Q 028428 202 GTM 204 (209)
Q Consensus 202 ~~~ 204 (209)
.+.
T Consensus 145 ~~a 147 (213)
T 1hh8_A 145 ALA 147 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 46
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.56 E-value=1.6e-13 Score=109.11 Aligned_cols=122 Identities=24% Similarity=0.276 Sum_probs=110.5
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.....|..++..|++++|+..|.+++...|.++ .....++..+|.++..+|++++|+..+.+++..+|+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 345679999999999999999999999876643 234556889999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028428 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
++.+++.+|.++..+|++++|...|+++++++|+++.+...+..+...+++.+
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988877654
No 47
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=3.8e-14 Score=94.34 Aligned_cols=100 Identities=20% Similarity=0.181 Sum_probs=92.6
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL- 141 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~- 141 (209)
+...|..++..|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 4578999999999999999999999986653 347899999999999999999999999999999
Q ss_pred -chHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCH
Q 028428 142 -NVKALYRRSQAHLKT-SELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 142 -~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~l~p~~~ 177 (209)
+..+++.+|.++..+ |++++|+.++++++...|.++
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999 999999999999999999763
No 48
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.54 E-value=4.7e-13 Score=103.25 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=103.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh--------hcCHHHHHHH
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--------LEDYSETSSL 131 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~~A~~~ 131 (209)
...+...|..++..|+|++|+..|.+++...|..+. ...+++++|.+++. +|++++|+..
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 456778888888888888898888888888776544 35679999999999 9999999999
Q ss_pred HHHHhhhCCCchHHH-----------------HHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHH
Q 028428 132 CTKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQ 190 (209)
Q Consensus 132 ~~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~~~ 190 (209)
+.+++...|++..+. +.+|.+|..+|++++|+..|+++++..|++ +.+...+..+...+
T Consensus 120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 999999999986665 899999999999999999999999999984 56777787777766
No 49
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.54 E-value=1.2e-14 Score=122.31 Aligned_cols=116 Identities=24% Similarity=0.346 Sum_probs=106.3
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|+|++|+..|.+|+.+.|.. ..++.++|.++..+|++++|+..+++++++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45566788999999999999999999999986654 457999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus 70 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 120 (477)
T 1wao_1 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888887443
No 50
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.54 E-value=2.8e-13 Score=92.58 Aligned_cols=128 Identities=25% Similarity=0.313 Sum_probs=111.5
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|..++..|++++|+..|.+++...|.. ..++.++|.++...|++++|+..+.+++..+|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 46678999999999999999999999875543 346889999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
+..+++.+|.++...|++++|+..+++++...|.+..+...+..+....++..+.. ..|.+++
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~ 130 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999999988888887776665543 3455443
No 51
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.54 E-value=1.6e-13 Score=105.94 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=99.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|+|++|+..|.+++...|..+. ...+++.+|.+++.+|+|++|+..+.+++...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW------------AADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 567789999999999999999999999998776543 35689999999999999999999999999998
Q ss_pred CCc---hHHHHHHHHHHhc--------cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028428 140 PLN---VKALYRRSQAHLK--------TSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 140 p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
|++ ..+++.+|.++.. +|++++|+..|+++++.+|+++.+...+
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 137 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT 137 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence 854 6789999999999 9999999999999999999987666443
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.3e-13 Score=104.91 Aligned_cols=113 Identities=26% Similarity=0.349 Sum_probs=95.0
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45567788888889999999999999998876653 246888899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNRVVKLVYMEL 186 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~------p~~~~~~~~l~~l 186 (209)
+|+++.+++.+|.++..+|++++|...|+++++++ |++..+...+..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99888899999999999999999999999999888 8888777776654
No 53
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.53 E-value=1.2e-13 Score=118.31 Aligned_cols=130 Identities=10% Similarity=0.037 Sum_probs=116.1
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|++++|+..|.+++.+.|.. ..++.++|.++..+|++++|+..+++++++
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 86 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---------------PEAVARLGRVRWTQQRHAEAAVLLQQASDA 86 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 35678899999999999999999999999987654 347999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ---REYAKYQAEIFGTM 204 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~---~~~~~~~~~~~~~~ 204 (209)
+|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+ ++..+.. ..|.+.
T Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~-~~~~~a 154 (568)
T 2vsy_A 87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS-AQVRAA 154 (568)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999998887 6665443 344443
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=6.6e-13 Score=95.81 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=112.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..++..|++++|+..|.+++...|.. ..++.++|.++...|++++|+..+.+++..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4556788999999999999999999999986543 3478999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
|.+..+++.+|.++...|++++|+..+++++...|.++.+...+..+....++..+.. ..|.+.
T Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~ 170 (186)
T 3as5_A 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKA 170 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999888777665543 244443
No 55
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.52 E-value=4.8e-13 Score=101.29 Aligned_cols=113 Identities=13% Similarity=0.144 Sum_probs=98.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|+|++|+..|.+++...|..+. ...+++++|.++..+|+|++|+..++++++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 456788999999999999999999999998776543 24579999999999999999999999999999
Q ss_pred CCchH---HHHHHHHHHhc------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028428 140 PLNVK---ALYRRSQAHLK------------------TSELEKAEADIKRALTIDPNNRVVKLVYM 184 (209)
Q Consensus 140 p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 184 (209)
|++.. +++.+|.++.. .|++++|+..|+++++..|+++.+...+.
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~ 137 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK 137 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence 99865 89999999986 67999999999999999999976654433
No 56
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.5e-13 Score=101.90 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=118.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh-----------HHHHHHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-----------DEKHQANGLRLSCYLNNAACKLKLEDYSET 128 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 128 (209)
+..+...|..+...|++++|+..|.+++.+.+....... +......+....++.++|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 677889999999999999999999999996543110000 000002234567899999999999999999
Q ss_pred HHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 129 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 129 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+..+.+++..+|.++.+++.+|.++..+|++++|+..++++++++|+++.+...+..+....++..+.. ..|.+.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a 233 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAA 233 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988877766543 244443
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=9.1e-13 Score=101.38 Aligned_cols=115 Identities=18% Similarity=0.082 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..++..|++++|+..|.+++...|.. ..++.++|.++...|++++|+..+.+++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3457778899999999999999999999999986653 3479999999999999999999999999
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028428 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
.++|.+..+++.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus 105 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999998665555443
No 58
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.51 E-value=2.1e-13 Score=97.52 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=88.9
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
...+++++|.+++..|+|++|+..|.+++.++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028428 188 DKQREYAKYQAEIFGTML 205 (209)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~ 205 (209)
..+++..+... .|.+.+
T Consensus 115 ~~lg~~~eA~~-~~~~al 131 (151)
T 3gyz_A 115 LRLKAPLKAKE-CFELVI 131 (151)
T ss_dssp HHTTCHHHHHH-HHHHHH
T ss_pred HHcCCHHHHHH-HHHHHH
Confidence 99888876643 555543
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=4.1e-13 Score=112.82 Aligned_cols=128 Identities=12% Similarity=-0.008 Sum_probs=114.7
Q ss_pred HHHHHHHhHHHHHcCCH-HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 60 CERKKHDGNLLFRAGKY-WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
+..+...|..++..|+| ++|+..|.+++.+.|.. ..++.++|.+|..+|++++|+..|.+++++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678899999999999 99999999999987664 347999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKT---------SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ--------REYAKYQAEIF 201 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~--------~~~~~~~~~~~ 201 (209)
+|+ ..+++.+|.++..+ |++++|+..|+++++++|++..++..+..+...+ ++..+... .|
T Consensus 167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~-~~ 244 (474)
T 4abn_A 167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-AY 244 (474)
T ss_dssp CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH-HH
Confidence 999 79999999999999 9999999999999999999999999999999887 66665533 44
Q ss_pred Hhh
Q 028428 202 GTM 204 (209)
Q Consensus 202 ~~~ 204 (209)
.+.
T Consensus 245 ~~a 247 (474)
T 4abn_A 245 AQA 247 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=2.3e-13 Score=114.34 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=111.7
Q ss_pred HHHHHHhHHHHHc---------CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--------c
Q 028428 61 ERKKHDGNLLFRA---------GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--------E 123 (209)
Q Consensus 61 ~~~~~~g~~~~~~---------~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~ 123 (209)
..+...|..+... |++++|+..|.+++.+.|.+. .++.++|.++..+ |
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG---------------RSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHHHhhccccc
Confidence 4567788888888 999999999999999977643 4799999999999 9
Q ss_pred CHHHHHHHHHHHhhhCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028428 124 DYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 197 (209)
Q Consensus 124 ~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~ 197 (209)
++++|+..+++++.++| .++.+++++|.+|..+|++++|+..|+++++++|+++.++..+..+...+++..+.-
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999999999999999999999999988887766543
No 61
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=3.5e-13 Score=100.37 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=94.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999986653 3579999999999999999999999999988
Q ss_pred CCch----------------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028428 140 PLNV----------------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 140 p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
|.+. .+++++|.++..+|++++|+..|+++++++|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 8766 9999999999999999999999999999999763
No 62
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=4.9e-13 Score=102.96 Aligned_cols=117 Identities=12% Similarity=0.065 Sum_probs=65.2
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|..++..|++++|+..|.+++...|.... ++.++|.++..+|++++|+..+.+++. .|.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~ 68 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY---------------IYNRRAVCYYELAKYDLAQKDIETYFS-KVN 68 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST---------------THHHHHHHHHHTTCHHHHHHHHHHHHT-TSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC
Confidence 3456788888888888888888888887666543 244555555555555555555555554 222
Q ss_pred c----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028428 142 N----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 142 ~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
+ ..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+....++..
T Consensus 69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence 2 2234555555555555555555555555555555555555555444444433
No 63
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1.6e-12 Score=98.18 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=91.4
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..++..|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++..+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSA---------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 5667788999999999999999999999886543 2356777777777777777777777777777
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
|.+..+++.+|.++...|++++|+..+++++.+.|++..+...+..+....++..+
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777777777777777777777777777777666665555443
No 64
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.48 E-value=7.2e-14 Score=99.45 Aligned_cols=108 Identities=9% Similarity=0.005 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHH
Q 028428 81 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE 160 (209)
Q Consensus 81 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~ 160 (209)
..|.+++.+.|.+ ..+++++|.+++..|+|++|+..+.+++.++|.++.+++.+|.++..+|+++
T Consensus 8 ~~~~~al~~~p~~---------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 8 GTIAMLNEISSDT---------------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp CSHHHHTTCCHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHcCCHhh---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence 3466677665543 4578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 161 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 161 ~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+|+..|++++.++|+++.+...+..+...+++..+... .|.+.
T Consensus 73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~a 115 (148)
T 2vgx_A 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES-GLFLA 115 (148)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 99999999999999999999999999888877766533 44443
No 65
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.48 E-value=1.3e-13 Score=120.69 Aligned_cols=127 Identities=11% Similarity=0.104 Sum_probs=108.3
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
..+...|..++..|++++|+..|.+++...|.+. .+++++|.++..+|++++|+..|+++++++|
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 498 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW---------------RLVWYRAVAELLTGDYDSATKHFTEVLDTFP 498 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4677889999999999999999999999877653 4789999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
++..+++++|.++..+|++++ +..|+++++++|++..+...+..+...+++..+.. ..|.+.
T Consensus 499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a 560 (681)
T 2pzi_A 499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV-RTLDEV 560 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHTS
T ss_pred CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH-HHHHhh
Confidence 999999999999999999999 99999999999999999888888888877776553 244443
No 66
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.48 E-value=3.9e-13 Score=107.82 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=106.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++.++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566778999999999999999999999886553 3478999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-----------RVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-----------~~~~~~l~~l~~~~~~~~~~ 196 (209)
|++..+++.+|.++..+|++++|+..|++++.+.|++ ..++..+..+...+++....
T Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999999999999999999999999999999998888 78888888888877665544
No 67
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.47 E-value=2.5e-12 Score=105.88 Aligned_cols=120 Identities=24% Similarity=0.285 Sum_probs=108.0
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.....|..++..|++++|+..|.+++...|.++ .....++.++|.++..+|++++|+..+.+++.++|+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 327 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 345669999999999999999999999866532 233567999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028428 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
+..+++.+|.++...|++++|+..|+++++++|+++.+...+..+...++.
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999988776654
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=6.5e-13 Score=95.82 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=111.4
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|++++|+..|.+++...|.. ..++..+|.++...|++++|+..+.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35667889999999999999999999999875543 357899999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+|.+..+++.+|.++...|++++|...+++++..+|.+..+...+..+....++..+.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence 9999999999999999999999999999999999999999999999888777666554
No 69
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=9.1e-13 Score=99.57 Aligned_cols=129 Identities=15% Similarity=0.089 Sum_probs=109.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..++..|++++|+..|.+++...|..+ .++..+|.++...|++++|+..+.+++..+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG---------------DLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH---------------HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 34567788999999999999999999999866542 368899999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
|.+..+++.+|.++...|++++|+..+++++..+|++..+...+..+....+...+.. ..|+++
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~ 219 (243)
T 2q7f_A 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL-EMLDKA 219 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH-HHHHHH
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999888888887776655442 244444
No 70
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.47 E-value=6.7e-13 Score=106.76 Aligned_cols=126 Identities=13% Similarity=-0.022 Sum_probs=102.5
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028428 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 144 (209)
..|..+...|++++|+..|.+++...|.... ..++.++|.++..+|++++|+..+.+++..+|++..
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 248 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3478888899999999999999998766322 347899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 145 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..+.. ..|.++
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a 307 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV-SNFLTA 307 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH-HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999888877666543 244443
No 71
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=2.4e-12 Score=95.85 Aligned_cols=87 Identities=17% Similarity=0.048 Sum_probs=62.4
Q ss_pred HHHhHHHHHHHhh-cCHHHHHHHHHHHhh--hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028428 110 SCYLNNAACKLKL-EDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 110 ~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
.++.++|.++... |++++|+..+.+++. .+|.+..+++.+|.++...|++++|+..++++++.+|++..+...+..+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 3567777777777 777777777777777 5555667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHH
Q 028428 187 KDKQREYAKY 196 (209)
Q Consensus 187 ~~~~~~~~~~ 196 (209)
....++..+.
T Consensus 157 ~~~~~~~~~A 166 (225)
T 2vq2_A 157 KMLAGQLGDA 166 (225)
T ss_dssp HHHHTCHHHH
T ss_pred HHHcCCHHHH
Confidence 6666655544
No 72
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=1.5e-12 Score=105.68 Aligned_cols=143 Identities=15% Similarity=0.095 Sum_probs=83.8
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-------------hHHH------HHHHHHHHHHHhHHHHHHHh
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------DDEK------HQANGLRLSCYLNNAACKLK 121 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-------------~~~~------~~~~~~~~~~~~~~a~~~~~ 121 (209)
..+...|..+...|++++|+..|.+++.+.|...... .+-. -...+....++.++|.++..
T Consensus 170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence 4456677777777888888888888877655432100 0000 01111223455666666666
Q ss_pred hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028428 122 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIF 201 (209)
Q Consensus 122 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~ 201 (209)
.|++++|+..+.+++.++|+++.+++.+|.++...|++++|+..|+++++++|.+..+...+..+....+...+.. ..|
T Consensus 250 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~ 328 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RLY 328 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666655555544432 244
Q ss_pred Hhh
Q 028428 202 GTM 204 (209)
Q Consensus 202 ~~~ 204 (209)
.++
T Consensus 329 ~~a 331 (388)
T 1w3b_A 329 RKA 331 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 73
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=1e-12 Score=106.68 Aligned_cols=117 Identities=20% Similarity=0.127 Sum_probs=72.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..+...|++++|+..|.+++...|+.. .++.++|.++...|++++|+..+.+++..+
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI---------------DGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45678888899999999999999999988765532 245555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
|++..++..+|.++..+|++++|+..|++++..+|++..+...+..+....+
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 5555555555555555555555555555555555555555555554444333
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.46 E-value=8.8e-14 Score=121.86 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=105.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|++++|+..|.+++.+.|.... ++.++|.++..+|++++ +..|+++++++
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~---------------~~~~lg~~~~~~g~~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA---------------PKLALAATAELAGNTDE-HKFYQTVWSTN 530 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH---------------HHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------------HHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence 456788999999999999999999999999887654 79999999999999999 99999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
|++..+++++|.++..+|++++|+..|+++++++|++..++..+..+.
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888876
No 75
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.45 E-value=1.8e-12 Score=102.97 Aligned_cols=112 Identities=22% Similarity=0.243 Sum_probs=103.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIALK 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999999986654 3479999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP---NNRVVKLVYMEL 186 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p---~~~~~~~~l~~l 186 (209)
|++..+++.+|.++...|++++|+..|+++++++| +++.+...+..+
T Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (359)
T 3ieg_A 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH
Confidence 99999999999999999999999999999999999 888888777543
No 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=4.1e-12 Score=94.58 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=63.1
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP-NNRVVKLVYMELK 187 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~l~ 187 (209)
..++.++|.++...|++++|+..+.+++..+|.+..+++.+|.++...|++++|...+++++.++| .+......+..+.
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 456777777777777777777777777777777777777777777777777777777777777777 7777766666665
Q ss_pred HHHHHHH
Q 028428 188 DKQREYA 194 (209)
Q Consensus 188 ~~~~~~~ 194 (209)
...+...
T Consensus 193 ~~~~~~~ 199 (225)
T 2vq2_A 193 KALGNAQ 199 (225)
T ss_dssp HHTTCHH
T ss_pred HhcCcHH
Confidence 5544443
No 77
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=3.2e-12 Score=97.36 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=46.0
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhh--hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 111 CYLNNAACKLKLEDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
++.++|.++...|++++|+..+.+++. ..|.+..+++.+|.++...|++++|+..+++++.++|.+..+...+..+..
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 455555555555555555555555555 455555555555555555555555555555555555555555555555554
Q ss_pred HHHHHH
Q 028428 189 KQREYA 194 (209)
Q Consensus 189 ~~~~~~ 194 (209)
..++..
T Consensus 187 ~~g~~~ 192 (252)
T 2ho1_A 187 KEREYV 192 (252)
T ss_dssp HTTCHH
T ss_pred HcCCHH
Confidence 444433
No 78
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=3e-12 Score=98.50 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=77.0
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|..+...|++++|+..|.+++...|... .++.++|.++..+|++++|+..+.+++.++|.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 355666666677777777777777776655433 25677777777777777777777777777777
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
++.+++.+|...+..+++++|+..|+++++++|++..+...+..+...+.
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 77777777733333447777777777777777777666666666655443
No 79
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.44 E-value=7.5e-13 Score=106.48 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=107.3
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..+...|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++.++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567789999999999999999999999986654 3479999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------------RVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------------~~~~~~l~~l~~~~~~~~~~ 196 (209)
|++..+++.+|.+|..+|++++|+..|+++++++|++ ..++..+..+...+......
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 9999999999999999999999999999999999873 56677777777666655433
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.44 E-value=3.6e-12 Score=100.29 Aligned_cols=129 Identities=12% Similarity=0.004 Sum_probs=104.0
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-cCHHHHHHHHHHHhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLE 137 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~ 137 (209)
.+..+.+.|..+...|++++|+.+|.+|+.+.+..... .....++.++|.+|... |++++|+..|++++.
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 46678888899999999999999999999888765431 23356799999999996 999999999999999
Q ss_pred hCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHHHHHH
Q 028428 138 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VKLVYMELKDKQREYAKY 196 (209)
Q Consensus 138 ~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~-------~~~~l~~l~~~~~~~~~~ 196 (209)
+.|.. ..++.++|.++..+|++++|+..|++++.+.|++.. ....+..+...+++..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 97754 567899999999999999999999999999988754 345555666555444433
No 81
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.44 E-value=1e-12 Score=95.72 Aligned_cols=130 Identities=14% Similarity=0.114 Sum_probs=97.9
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH-----------
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS----------- 130 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~----------- 130 (209)
.....|..++..|++++|+..|.+++...|.++. ++.++|.++...|++++|+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 72 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---------------VKLAKADCLLETKQFELAQELLATIPLEYQD 72 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---------------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---------------HHHHHHHHHHHCCCHHHHHHHHHHhhhccCC
Confidence 3567888889999999999999999988777543 45666666666666555544
Q ss_pred -----------------------HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--HHHHHHHHH
Q 028428 131 -----------------------LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYME 185 (209)
Q Consensus 131 -----------------------~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~ 185 (209)
.+.+++..+|+++.+++.+|.++...|++++|+..|+++++++|+. +.++..+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 73 NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 4455556678889999999999999999999999999999999875 568888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 028428 186 LKDKQREYAKYQAEIFGTMLSK 207 (209)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~ 207 (209)
+...+....+. ...|.+.+..
T Consensus 153 ~~~~~g~~~~A-~~~y~~al~~ 173 (176)
T 2r5s_A 153 ILSALGQGNAI-ASKYRRQLYS 173 (176)
T ss_dssp HHHHHCSSCHH-HHHHHHHHHH
T ss_pred HHHHhCCCCcH-HHHHHHHHHH
Confidence 88877665543 3355555443
No 82
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.44 E-value=3e-12 Score=106.87 Aligned_cols=107 Identities=30% Similarity=0.301 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
+.+.+..+...|..++..|+|++|+..|.+++...|+ ..++.++|.++..+|++++|+..+.++
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 3567889999999999999999999999999998652 357999999999999999999999999
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028428 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 178 (209)
+..+|++..+++.+|.++..+|++++|+..|++++.++|.+..
T Consensus 66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999986643
No 83
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.44 E-value=1.4e-12 Score=88.15 Aligned_cols=101 Identities=8% Similarity=-0.008 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC
Q 028428 78 RASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS 157 (209)
Q Consensus 78 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 157 (209)
.|+..|.+++...|.++ .++.++|.++...|++++|+..+.+++.++|.+..+++.+|.++..+|
T Consensus 3 ~a~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 3 AITERLEAMLAQGTDNM---------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp CHHHHHHHHHTTTCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence 57889999999866543 479999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHH
Q 028428 158 ELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREY 193 (209)
Q Consensus 158 ~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~~~~~~ 193 (209)
++++|+..|++++.++|. +......+..+...+...
T Consensus 68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence 999999999999999884 455555555555555443
No 84
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.44 E-value=2.2e-12 Score=101.53 Aligned_cols=123 Identities=17% Similarity=0.093 Sum_probs=106.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..++..|++++|+..|.+++...+....... .+....++.++|.++..+|++++|+..+.+++.++
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 455778999999999999999999999998754221100 00013479999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
|++..+++.+|.++..+|++++|...|+++++++|+++.+...+..+..
T Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888764
No 85
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.43 E-value=3.5e-12 Score=100.42 Aligned_cols=128 Identities=13% Similarity=0.007 Sum_probs=103.6
Q ss_pred HHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 61 ERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 61 ~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
..+...|..++..| ++++|+..|.+++...|..+ .++.++|.++...|++++|+..+.+++...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG---------------PAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 34667777778888 78888888888887765543 368899999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
|++..+++.+|.++...|++++|+..++++++++|+++.+...+..+....++..+... .|.+.
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a 219 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK-WFLDA 219 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH-HHHHH
Confidence 99888899999999999999999999999999999998888888888877766665433 34433
No 86
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.43 E-value=3.5e-12 Score=100.61 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=67.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHH----HHhhcCHHHHHHHHHHH
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC----KLKLEDYSETSSLCTKV 135 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~A~~~~~~a 135 (209)
...+...|..+...|++++|+..|.+++...|... ..+++.+ +...|++++|+..++++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------------LTQLATAWVSLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------------HHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 44566788888999999999999999988754421 1122111 11234555555555555
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+..+....+
T Consensus 193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 55555555555555555555555555555555555555555555555554444433
No 87
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=3.9e-14 Score=94.67 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=71.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|+|++|+..|.+++...|..+ .++.++|.++..+|++++|+..+.+++.++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP---------------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45667788888888888888888888888765532 367888888888888888888888888888
Q ss_pred CCc------hHHHHHHHHHHhccCCHHHHHHHHH
Q 028428 140 PLN------VKALYRRSQAHLKTSELEKAEADIK 167 (209)
Q Consensus 140 p~~------~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (209)
|++ ..+++++|.++..+|+++.|+..++
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 887 7778888888888877776665544
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.43 E-value=1.4e-12 Score=102.56 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=102.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHH-------
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC------- 132 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~------- 132 (209)
...+...|..+...|++++|+..|.+++...|.++ .++.++|.++...|++++|+..+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG---------------EIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH---------------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch---------------hHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 45678999999999999999999999999987654 36777788877777777766554
Q ss_pred ---------------------------HHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--HHHHHHH
Q 028428 133 ---------------------------TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVY 183 (209)
Q Consensus 133 ---------------------------~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l 183 (209)
.+++..+|++..+++.+|.++...|++++|+..|.+++..+|++ ..++..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 44566789999999999999999999999999999999999998 8899999
Q ss_pred HHHHHHHHHHHHH
Q 028428 184 MELKDKQREYAKY 196 (209)
Q Consensus 184 ~~l~~~~~~~~~~ 196 (209)
..+...+......
T Consensus 262 ~~~~~~~g~~~~a 274 (287)
T 3qou_A 262 QEILAALGTGDAL 274 (287)
T ss_dssp HHHHHHHCTTCHH
T ss_pred HHHHHHcCCCCcH
Confidence 9998887654443
No 89
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.43 E-value=1.7e-13 Score=99.58 Aligned_cols=124 Identities=14% Similarity=0.088 Sum_probs=104.3
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH
Q 028428 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 145 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 145 (209)
.+..++..|++++|+..|.+++...|.. ..++..+|.++...|++++|+..+.+++.++|.++.+
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 80 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 4455677899999999999999986654 3479999999999999999999999999999999999
Q ss_pred HHHHHHH-HhccCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 146 LYRRSQA-HLKTSEL--EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 146 ~~~~a~~-~~~~~~~--~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
++.+|.+ +...|++ ++|+..+++++.++|++..+...+..+....+...+... .|.+.+
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 142 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH-HHHHHH
Confidence 9999999 8899999 999999999999999999999999999888877765533 455443
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.42 E-value=6.1e-12 Score=95.17 Aligned_cols=130 Identities=7% Similarity=-0.026 Sum_probs=108.0
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh------------------h
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK------------------L 122 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~ 122 (209)
..+...|..++..|+|++|+..|.+++...|..+. ...+++.+|.++.. .
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 109 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDP 109 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHHC--------------CC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCc
Confidence 46778999999999999999999999999887654 13467788888775 6
Q ss_pred cCHHHHHHHHHHHhhhCCCchHHH-----------------HHHHHHHhccCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 028428 123 EDYSETSSLCTKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLV 182 (209)
Q Consensus 123 ~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~ 182 (209)
|++++|+..+.++++..|++..+. +.+|.+|...|++++|+..|+++++..|+++ .+...
T Consensus 110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL 189 (225)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence 799999999999999999987554 6789999999999999999999999999986 56777
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028428 183 YMELKDKQREYAKYQAEIFGT 203 (209)
Q Consensus 183 l~~l~~~~~~~~~~~~~~~~~ 203 (209)
+..+...++...+.. ..+++
T Consensus 190 l~~~~~~~g~~~~A~-~~~~~ 209 (225)
T 2yhc_A 190 MENAYRQMQMNAQAE-KVAKI 209 (225)
T ss_dssp HHHHHHHTTCHHHHH-HHHHH
T ss_pred HHHHHHHcCCcHHHH-HHHHH
Confidence 777777777766553 34443
No 91
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.42 E-value=2.6e-12 Score=101.03 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=110.6
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..++..|++++|+..|.+++...|.. ..++.++|.++...|++++|+..+.++++.+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4557788999999999999999999999986654 3479999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN------------NRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~------------~~~~~~~l~~l~~~~~~~~~~ 196 (209)
|.+..+++.+|.++..+|++++|+..+++++.+.|+ +..+...+..+...+++..+.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999999 788888899988887776654
No 92
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.9e-12 Score=87.84 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=83.5
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
...+.++|.+++..|+|++|+..+.+++.++|.++.+++++|.++..+|++++|+.+++++++++|++..+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 028428 189 KQREYAKYQ 197 (209)
Q Consensus 189 ~~~~~~~~~ 197 (209)
.+++..+..
T Consensus 84 ~~~~~~~A~ 92 (126)
T 3upv_A 84 AVKEYASAL 92 (126)
T ss_dssp HTTCHHHHH
T ss_pred HHhCHHHHH
Confidence 887776553
No 93
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=2.4e-12 Score=98.09 Aligned_cols=130 Identities=15% Similarity=0.007 Sum_probs=114.3
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|++++|+..|.+++...|.. ..++..+|.++...|++++|+..+.+++..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---------------ADAHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 37788999999999999999999999999986543 347999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALT--IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+|.+..+++.+|.++...|++++|+..+++++. ..|.+..+...+..+....++..+... .|.+.
T Consensus 101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 167 (252)
T 2ho1_A 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE-YFEKS 167 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 999999999999999999999999999999999 888888999888888877766655432 44443
No 94
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.42 E-value=9.1e-13 Score=91.22 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=75.9
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH-------HH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VK 180 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~-------~~ 180 (209)
.+.++.++|.++++.|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+.+++++++++|++.. +.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999887643 44
Q ss_pred HHHHHHHHHHHHHHHH
Q 028428 181 LVYMELKDKQREYAKY 196 (209)
Q Consensus 181 ~~l~~l~~~~~~~~~~ 196 (209)
..+..+...++.+.+.
T Consensus 87 ~~lg~~~~~~~~~~~A 102 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLA 102 (127)
T ss_dssp HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHH
Confidence 4555555555555443
No 95
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.41 E-value=8.5e-12 Score=99.97 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=85.9
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
...++.++|.++...|++++|+..+.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028428 188 DKQREYAKYQAEIFGTM 204 (209)
Q Consensus 188 ~~~~~~~~~~~~~~~~~ 204 (209)
...++..+... .|.++
T Consensus 296 ~~~g~~~~A~~-~~~~a 311 (368)
T 1fch_A 296 INLGAHREAVE-HFLEA 311 (368)
T ss_dssp HHHTCHHHHHH-HHHHH
T ss_pred HHCCCHHHHHH-HHHHH
Confidence 88877765533 44443
No 96
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.41 E-value=9.8e-12 Score=102.35 Aligned_cols=114 Identities=22% Similarity=0.237 Sum_probs=103.9
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 457778899999999999999999999999986653 35799999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMEL 186 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~l 186 (209)
.+|++..+++.+|.+|..+|++++|+..|+++++++|++. .+...+..+
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 776666444
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=9.2e-12 Score=95.61 Aligned_cols=140 Identities=22% Similarity=0.179 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..++..|++++|+..|.+++.+........ .+....++.++|.++..+|++++|+..+.+++
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 112 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34577788999999999999999999999999864321000 13456789999999999999999999999999
Q ss_pred hh--------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028428 137 EL--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI--------DPNNRVVKLVYMELKDKQREYAKYQAEI 200 (209)
Q Consensus 137 ~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 200 (209)
.+ +|....+++.+|.++..+|++++|+..+++++.+ .|....+...+..+....++..+... .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~ 191 (283)
T 3edt_B 113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-L 191 (283)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-H
Confidence 88 4777889999999999999999999999999998 66667788888888887777665533 4
Q ss_pred HHhh
Q 028428 201 FGTM 204 (209)
Q Consensus 201 ~~~~ 204 (209)
|.+.
T Consensus 192 ~~~~ 195 (283)
T 3edt_B 192 YKEI 195 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 98
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.40 E-value=9.6e-12 Score=85.29 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=86.2
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028428 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
.++.+|.+++..|++++|+..+.+++..+|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhh
Q 028428 191 REYAKYQAEIFGTML 205 (209)
Q Consensus 191 ~~~~~~~~~~~~~~~ 205 (209)
++..+... .|.+.+
T Consensus 99 g~~~~A~~-~~~~al 112 (121)
T 1hxi_A 99 HNANAALA-SLRAWL 112 (121)
T ss_dssp HHHHHHHH-HHHHHH
T ss_pred CCHHHHHH-HHHHHH
Confidence 88876643 555543
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=6.8e-12 Score=85.52 Aligned_cols=102 Identities=27% Similarity=0.387 Sum_probs=92.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..++..|++++|+..|.+++...|.. ..++.++|.++...|++++|+..+.+++...
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456678999999999999999999999986543 3468999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
|.+..+++.+|.++...|++++|...+++++.++|++
T Consensus 100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999864
No 100
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.40 E-value=1.3e-12 Score=109.85 Aligned_cols=115 Identities=24% Similarity=0.313 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028428 49 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSET 128 (209)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 128 (209)
..++..+....+..+...|..++..|+|++|+..|.+++...|.+ ..++.++|.|+..+|++++|
T Consensus 14 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A 78 (537)
T 3fp2_A 14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------------PVFYSNISACYISTGDLEKV 78 (537)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHH
Confidence 446778888899999999999999999999999999999987664 35799999999999999999
Q ss_pred HHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028428 129 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 179 (209)
Q Consensus 129 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 179 (209)
+..+.+++.++|+++.+++.+|.++..+|++++|+..|+ ++.++|+....
T Consensus 79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 999999999999999999999999999999999999995 88888876543
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=6.1e-12 Score=98.97 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=92.3
Q ss_pred HHHHHHHHhHHHHHc-CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 59 ACERKKHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
.+..+...|..+... |++++|+.+|.+|+.+.+..... .....++.++|.++..+|+|++|+..+++++.
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356788899999996 99999999999999998865431 22346799999999999999999999999999
Q ss_pred hCCCchH-------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028428 138 LEPLNVK-------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 179 (209)
Q Consensus 138 ~~p~~~~-------~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 179 (209)
+.|.+.. +++++|.|+..+|++++|+.+|+++++++|+....
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9887643 68999999999999999999999999999987654
No 102
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.2e-11 Score=82.33 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=74.8
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLV 182 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~ 182 (209)
...+.++|.+++..|+|++|+..+++++.++|.++.+++++|.++..+|++++|+..++++++++|++ ..+...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999998 666666
Q ss_pred HHHHHHHHH
Q 028428 183 YMELKDKQR 191 (209)
Q Consensus 183 l~~l~~~~~ 191 (209)
+..+...++
T Consensus 84 ~~~~~~~~~ 92 (111)
T 2l6j_A 84 LELAQGAVG 92 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 103
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.37 E-value=1.1e-11 Score=87.05 Aligned_cols=94 Identities=9% Similarity=0.041 Sum_probs=85.5
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
...++++|.+++..|+|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..|++++.++|+++.+...+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHh
Q 028428 189 KQREYAKYQAEIFGT 203 (209)
Q Consensus 189 ~~~~~~~~~~~~~~~ 203 (209)
.+++..+... .|.+
T Consensus 98 ~~g~~~~A~~-~~~~ 111 (142)
T 2xcb_A 98 QLGDLDGAES-GFYS 111 (142)
T ss_dssp HTTCHHHHHH-HHHH
T ss_pred HcCCHHHHHH-HHHH
Confidence 8877766533 4443
No 104
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.36 E-value=1.7e-11 Score=78.66 Aligned_cols=82 Identities=30% Similarity=0.387 Sum_probs=76.9
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
...++.++|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++.++|+++.+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999998888776
Q ss_pred HH
Q 028428 188 DK 189 (209)
Q Consensus 188 ~~ 189 (209)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 105
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.36 E-value=1.2e-11 Score=88.77 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=87.7
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
....+..+|.+++..|+|++|+..|.+++.++|.+..+++++|.+|..+|++++|+.+|+++++++|++..++..+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028428 188 DKQREYAKYQAEIFGTM 204 (209)
Q Consensus 188 ~~~~~~~~~~~~~~~~~ 204 (209)
..++++.+... .|.+.
T Consensus 90 ~~~g~~~~A~~-~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKE-AYEKG 105 (164)
T ss_dssp HHTTCHHHHHH-HHHHH
T ss_pred HHccCHHHHHH-HHHHH
Confidence 88888776543 44444
No 106
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=8.8e-12 Score=95.80 Aligned_cols=124 Identities=10% Similarity=-0.043 Sum_probs=105.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHH
Q 028428 70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR 149 (209)
Q Consensus 70 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 149 (209)
....|++++|+..|.+++...+.. .+....++.++|.++...|++++|+..+.+++.++|.+..+++.+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 83 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALT-----------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 83 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhccccc-----------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 344588999999999999863211 123466899999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 150 SQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 150 a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
|.++...|++++|+..|+++++++|.+..+...+..+....++..+.. ..|.+++
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~ 138 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFY 138 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999988887776553 3555443
No 107
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=2.5e-11 Score=98.60 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..++..|+++.|+.+|.+|+.+.+..... ......++.++|.+|..+|++++|+..+.+++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3457778889999999999999999999999988776542 13456688999999999999999999999998
Q ss_pred hhCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHHHHHHHH
Q 028428 137 ELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALT-----ID-PNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 137 ~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----l~-p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
.+.+.. ..+++++|.+|..+|++++|+.+++++++ .+ |....+...++.+...+++..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence 875433 35788999999999999999999999988 35 66677777888877766665544
No 108
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.35 E-value=3.1e-11 Score=84.88 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
....+..+...|..++..|++++|+..|.+++.+.+.... ......++.++|.++..+|++++|+..+.++
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456778899999999999999999999999999876543 1344568999999999999999999999999
Q ss_pred hhhCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHHHHHHH
Q 028428 136 LELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPN--N----RVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 136 l~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~----~~~~~~l~~l~~~~~~~~~~ 196 (209)
+.+.+.. ..+++.+|.++..+|++++|+..+++++.+.+. + ..+...+..+....++..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 9875442 668999999999999999999999999987432 2 34555666666666655544
No 109
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.4e-11 Score=101.29 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=103.9
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh---hcCHHHHHHHHHHHhh
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK---LEDYSETSSLCTKVLE 137 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~ 137 (209)
..+...|..++..|++++|+..|.+++...|..+... ....++.++|.++.. .|++++|+..+.+++.
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY---------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS---------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH---------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 3466778888888899999999998888877765310 002368999999999 9999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
.+|++..+++.+|.++...|++++|...|+++++++|+++.+...+..+....
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 496 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAK 496 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877665543
No 110
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.34 E-value=8.2e-12 Score=104.98 Aligned_cols=143 Identities=14% Similarity=0.099 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC-------------ChHHH------HHHHHHHHHHHh
Q 028428 53 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-------------TDDEK------HQANGLRLSCYL 113 (209)
Q Consensus 53 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~-------------~~~~~------~~~~~~~~~~~~ 113 (209)
.......+..+...|..++..|++++|+..|.+++...|. ... ..+-. ....+....++.
T Consensus 236 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 314 (537)
T 3fp2_A 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYY 314 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Confidence 3344556778889999999999999999999999987654 110 00000 111222345788
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028428 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 193 (209)
Q Consensus 114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~ 193 (209)
++|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..++++++++|+++.+...+..+....++.
T Consensus 315 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888877776666
Q ss_pred HHH
Q 028428 194 AKY 196 (209)
Q Consensus 194 ~~~ 196 (209)
.+.
T Consensus 395 ~~A 397 (537)
T 3fp2_A 395 DTA 397 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 111
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.34 E-value=3.1e-11 Score=102.94 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=101.1
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
..+...|..+...|++++|+..|.+++...+..+..+ .....+|.++|.++...|++++|+..++++++.+|
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE--------KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS--------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch--------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 3466777778888888888888888887765422211 01256899999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
++..+++.+|.+|...|++++|...|+++++++|+++.+...+..+.
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888764
No 112
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.4e-11 Score=99.19 Aligned_cols=126 Identities=17% Similarity=0.061 Sum_probs=100.8
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|++++|+..|.+|+++.+...... ........|.|+|.+|..+|++++|+.++++++.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 44567789999999999999999999999865422100 001135678999999999999999999999999763
Q ss_pred --------CCchHHHHHHHHHHhcc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 140 --------PLNVKALYRRSQAHLKT--SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 140 --------p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+..+.++..+|.++... +++++|+.+|+++++++|+++.+...+..+..++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 34578888898887765 47999999999999999999999888887765543
No 113
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.33 E-value=2e-11 Score=96.20 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=87.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHH
Q 028428 71 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS 150 (209)
Q Consensus 71 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a 150 (209)
...|++++|+..|.+++...|.+ ..+++++|.++..+|++++|+..+.+++..+|+++.+++++|
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPT---------------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34589999999999999986653 357999999999999999999999999999999999999999
Q ss_pred HHHhccCCHHH-HHHHHHHHHhcCCCCHHHHH
Q 028428 151 QAHLKTSELEK-AEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 151 ~~~~~~~~~~~-A~~~~~~a~~l~p~~~~~~~ 181 (209)
.++..+|++++ +..+++++++++|+++.+..
T Consensus 242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999976 57899999999999998765
No 114
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.32 E-value=9.9e-11 Score=91.89 Aligned_cols=143 Identities=10% Similarity=-0.023 Sum_probs=110.8
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh------------------------HHHHH----------HHH
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD------------------------DEKHQ----------ANG 106 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~------------------------~~~~~----------~~~ 106 (209)
..+...|..+...|++++|+..|.+++...|....... ..... ..+
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 44566777777888888888888888776655432210 00000 111
Q ss_pred HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028428 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
....++..+|.++...|++++|+..+.+++..+|++..+++.+|.++...|++++|+..++++++++|++..+...+..+
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 13567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028428 187 KDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~ 204 (209)
....++..+... .|.+.
T Consensus 250 ~~~~g~~~~A~~-~~~~a 266 (327)
T 3cv0_A 250 YSNMSQYDLAAK-QLVRA 266 (327)
T ss_dssp HHHTTCHHHHHH-HHHHH
T ss_pred HHHhccHHHHHH-HHHHH
Confidence 887777665432 44433
No 115
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.31 E-value=1.9e-11 Score=87.50 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=84.1
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-------chH-----HHHHHHHHHhccCCHHHHHHHHHHHHhc----
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-------NVK-----ALYRRSQAHLKTSELEKAEADIKRALTI---- 172 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~a~~l---- 172 (209)
...+.++|..+++.|+|++|+..|+++|+++|+ +.. +|+++|.|+..+|++++|+.++++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 173 ---DPNNRVVK----LVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 173 ---~p~~~~~~----~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+|++..++ ..+..+...++.+.+.-. .|.+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kA 128 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKV 128 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHH
Confidence 99999999 889888888887776643 44443
No 116
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.31 E-value=4.3e-11 Score=102.03 Aligned_cols=130 Identities=9% Similarity=-0.017 Sum_probs=112.7
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..+.+.|++++|+..|.+++...|.+ ..+|+.++.++...|++++|+..+.+++..+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF---------------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4456778899999999999999999999875543 3478999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
|++..+++.+|.+|...|++++|+..|+++++++|.++.+...+..+..+.+...+... .|.+|+
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 502 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN-HFQNAL 502 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999998887777665533 555554
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.31 E-value=1e-11 Score=106.27 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=87.3
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028428 73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 152 (209)
Q Consensus 73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 152 (209)
.|++++|+..|.+++...|.. ..++.++|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD---------------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 478999999999999986654 34799999999999999999999999999999999999999999
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 153 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 153 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
|..+|++++|+..|+++++++|++..+...+..+....++..+... .|.+.
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~a 117 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA-AYTRA 117 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999988877766533 44443
No 118
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=1.2e-10 Score=94.60 Aligned_cols=109 Identities=17% Similarity=0.014 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..+...|+|++|+.+|.+|+.+.+.... ......++.++|.+|..+|++++|+..+.+++
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356778889999999999999999999999998775443 23556789999999999999999999999999
Q ss_pred h-----hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028428 137 E-----LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174 (209)
Q Consensus 137 ~-----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p 174 (209)
. .+|....+++.+|.++..+|++++|..++++++++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9 7888899999999999999999999999999999854
No 119
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.30 E-value=5e-11 Score=82.39 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=86.0
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
...+..+|.+++..|+|++|+..+.+++.++|.+..+++.+|.++..+|++++|+..++++++++|++..+...+..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhh
Q 028428 189 KQREYAKYQAEIFGTM 204 (209)
Q Consensus 189 ~~~~~~~~~~~~~~~~ 204 (209)
.++...+.. ..|.+.
T Consensus 89 ~~~~~~~A~-~~~~~a 103 (137)
T 3q49_B 89 EMESYDEAI-ANLQRA 103 (137)
T ss_dssp HTTCHHHHH-HHHHHH
T ss_pred HHhhHHHHH-HHHHHH
Confidence 887776553 244433
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.30 E-value=2.7e-11 Score=95.09 Aligned_cols=124 Identities=14% Similarity=0.008 Sum_probs=100.8
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 138 (209)
+..+...|..++..+++++|+.+|.+++.+....... .....+++++|.+|..+|+|++|+..+.+++..
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4445568888888899999999999999965543332 123557999999999999999999999999942
Q ss_pred ------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHH
Q 028428 139 ------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE 192 (209)
Q Consensus 139 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~ 192 (209)
.+....+++++|.+|..+|++++|+.++++++++.+.. ..+...+..+...+++
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 23346689999999999999999999999999986543 6788888888887774
No 121
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=8.9e-11 Score=95.30 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
....+..+...|..+...|++++|+.+|.+|+.+.+.... ......++.++|.+|..+|++++|+..+.++
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455778889999999999999999999999999887643 2455678999999999999999999999999
Q ss_pred hh-----hC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028428 136 LE-----LE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174 (209)
Q Consensus 136 l~-----~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p 174 (209)
+. .+ |....+++++|.++..+|++++|..++++++.+.+
T Consensus 251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99 46 77899999999999999999999999999998843
No 122
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=4.5e-11 Score=91.72 Aligned_cols=109 Identities=20% Similarity=0.074 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..++..|++++|+..|.+++.+........ .+....++.++|.++..+|++++|+..+.+++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567788999999999999999999999999864321100 02356789999999999999999999999999
Q ss_pred hh--------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 137 EL--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 137 ~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
.+ +|....+++.+|.++..+|++++|+..+++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98 7777889999999999999999999999999986
No 123
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.29 E-value=1.4e-10 Score=97.77 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028428 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
.....+....+.+..+..+|+|++|+..|.+++.+........ .+..+..++|+|.+|..+|+|++|+..+.+
T Consensus 304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~ 376 (490)
T 3n71_A 304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYARR 376 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3455566777888888899999999999999999865432211 134577899999999999999999999999
Q ss_pred Hhhh-----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----CCCCHHHHH---HHHHHHHHHHHHHHHHH
Q 028428 135 VLEL-----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKL---VYMELKDKQREYAKYQA 198 (209)
Q Consensus 135 al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~---~l~~l~~~~~~~~~~~~ 198 (209)
++.+ .|++ ...+.++|.+|..+|++++|+..|++|+.+ -|+++.+.. .+..++..++.+++.+.
T Consensus 377 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 377 MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9965 4555 567999999999999999999999999975 577765554 55666666667766654
Q ss_pred HHHHhh
Q 028428 199 EIFGTM 204 (209)
Q Consensus 199 ~~~~~~ 204 (209)
.|+++
T Consensus 457 -~~~~~ 461 (490)
T 3n71_A 457 -MYHKM 461 (490)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 45544
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.28 E-value=4.9e-11 Score=93.66 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=92.6
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|+|++|+.+|.+++......+.. ......+++|+|.+|..+|+|++|+..+.+++++
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999999887654332 2456778999999999999999999999999988
Q ss_pred CCCc------hHHHHHHHHHHhccC-CHHHHHHHHHHHHhcC
Q 028428 139 EPLN------VKALYRRSQAHLKTS-ELEKAEADIKRALTID 173 (209)
Q Consensus 139 ~p~~------~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~ 173 (209)
.+.. ..+++++|.+|..+| ++++|+.+|++|+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6443 789999999999999 5799999999999763
No 125
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=7.3e-11 Score=95.79 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..++..|+++.|+.+|.+|+.+.+..... ....+.+++++|.+|..+|+|++|+..+.+++
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4456677778888888888888888888888877664432 12457789999999999999999999999999
Q ss_pred hhCC------CchHHHHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 137 ELEP------LNVKALYRRSQAHLKTSELEKAEADIKRALT-----IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 137 ~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
++.+ ....+++++|.+|..+|++++|+.++++++. .+|....+...++.+...+++..+... .+.+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a 287 (378)
T 3q15_A 210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEG 287 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence 8732 1256899999999999999999999999999 678778888889998888777765533 44443
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.27 E-value=6.6e-11 Score=93.67 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=87.8
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..+.. |++++|+.+|.+|+.+.+.... ......++.++|.++..+|+|++|+..+++++.+
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667778888877 8888888888888888776433 1234568899999999999999999999999988
Q ss_pred CCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028428 139 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 139 ~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
.|.+ ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 6543 3478889999999999999999999999 998654
No 127
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.4e-10 Score=90.39 Aligned_cols=139 Identities=22% Similarity=0.198 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH--HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
...+..+...|..++..|++++|+..|.+++.+.... .. .+....++.++|.++..+|++++|+..+.+
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 136 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD---------HPAVAATLNNLAVLYGKRGKYKEAEPLCKR 136 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 3446678889999999999999999999999986432 11 133567899999999999999999999999
Q ss_pred HhhhC--------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028428 135 VLELE--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI--------DPNNRVVKLVYMELKDKQREYAKYQA 198 (209)
Q Consensus 135 al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~l~~~~~~~~~~~~ 198 (209)
++.+. |....+++.+|.++...|++++|+..+++++.+ .|....+...+..+....++..+...
T Consensus 137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 137 ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99874 556788999999999999999999999999998 66667778888888887777665533
Q ss_pred HHHHhhh
Q 028428 199 EIFGTML 205 (209)
Q Consensus 199 ~~~~~~~ 205 (209)
.|.+++
T Consensus 217 -~~~~al 222 (311)
T 3nf1_A 217 -LYKEIL 222 (311)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 444443
No 128
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.27 E-value=5.6e-11 Score=78.52 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=69.5
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMEL 186 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l 186 (209)
..++.++|.++..+|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|++++++.|. +......+..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999999999764 44444444444
Q ss_pred H
Q 028428 187 K 187 (209)
Q Consensus 187 ~ 187 (209)
.
T Consensus 87 l 87 (100)
T 3ma5_A 87 K 87 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 129
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.26 E-value=5.1e-11 Score=76.37 Aligned_cols=84 Identities=27% Similarity=0.333 Sum_probs=76.0
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|++++|+..|.+++...|.. ..++.++|.++..+|++++|+..+.+++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45677889999999999999999999999986653 347899999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccC
Q 028428 139 EPLNVKALYRRSQAHLKTS 157 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~ 157 (209)
+|.+..+++.+|.++..+|
T Consensus 73 ~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999988764
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.26 E-value=1.6e-10 Score=90.62 Aligned_cols=125 Identities=14% Similarity=-0.026 Sum_probs=95.2
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh---hhC
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL---ELE 139 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~ 139 (209)
+...|..+...|++++|+..|.+++...+..... .....+++++|.+|..+|+|++|+..+.+++ +..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~ 188 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 4456666677777777777777777665433221 1135689999999999999999999999999 445
Q ss_pred CCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHHHHH
Q 028428 140 PLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPN------NRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 140 p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~------~~~~~~~l~~l~~~~~~~~~~ 196 (209)
|++ ..+++++|.+|..+|++++|+.++++++++.+. -..+...+..+...+++..+.
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 553 268999999999999999999999999988542 156777788887777665544
No 131
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.24 E-value=6e-11 Score=84.90 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=85.5
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh------------------CCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL------------------EPLNVKALYRRSQAHLKTSELEKAEADIKRA 169 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 169 (209)
.+..+.++|..++..|+|++|+..|.+++.+ +|.+..+++++|.||..+|++++|+.++.++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3557899999999999999999999999999 7888899999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028428 170 LTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT 203 (209)
Q Consensus 170 ~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 203 (209)
++++|++..+...+..+...++.+.+... .|.+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~ 122 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEE-DLKL 122 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHH
Confidence 99999999999999999988888776543 4443
No 132
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=1.4e-10 Score=94.42 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..++..|++++|+..|.+++...+.++ .....++.++|.++..+|++++|+..+.+++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45577788999999999999999999999999855532 2345689999999999999999999999999
Q ss_pred hh------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHH
Q 028428 137 EL------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 137 ~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~l~~~~~~ 192 (209)
.+ +|....+++.+|.+|..+|++++|+..+++++.+ .|....+...+..+....+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 88 5777899999999999999999999999999998 45556677788888877777
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.23 E-value=7.2e-11 Score=93.46 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=81.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..+...|++++|+.+|.+|+.+.+.... ......++.++|.+|.. |++++|+..|.+++.+.
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~ 145 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF 145 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 445666666666777777777777777776554332 12345678899999988 99999999999999886
Q ss_pred CCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028428 140 PLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 140 p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
|.. ..++.++|.+|..+|++++|+.+|++++.+.|.+
T Consensus 146 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 543 5678899999999999999999999999886644
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.23 E-value=1.5e-10 Score=90.85 Aligned_cols=107 Identities=18% Similarity=0.118 Sum_probs=90.9
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|+|++|+.+|.+|+.+....+.. ......+++|+|.+|..+|+|++|+..+++++.+
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999876654432 1223468999999999999999999999999987
Q ss_pred CCC------chHHHHHHHHHHhccCCHHHH-HHHHHHHHhcC
Q 028428 139 EPL------NVKALYRRSQAHLKTSELEKA-EADIKRALTID 173 (209)
Q Consensus 139 ~p~------~~~~~~~~a~~~~~~~~~~~A-~~~~~~a~~l~ 173 (209)
.+. ...+++++|.+|..+|++++| ..++++++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 543 277899999999999999999 88899998764
No 135
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=2.9e-10 Score=88.57 Aligned_cols=139 Identities=19% Similarity=0.130 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH--HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
...+..+...|..++..|++++|+..|.+++.+.... .. .+....++.++|.++...|++++|+..+.+
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD---------HPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456678889999999999999999999999986332 11 023467899999999999999999999999
Q ss_pred Hhhh--------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc----------------------------------
Q 028428 135 VLEL--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI---------------------------------- 172 (209)
Q Consensus 135 al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l---------------------------------- 172 (209)
++.+ +|....+++.+|.++..+|++++|+..+++++++
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 9998 6777889999999999999999999999999975
Q ss_pred ---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 173 ---------------DPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 173 ---------------~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
+|.+..+...+..+....++..+... .|.+.+
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 305 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET-LEEAAM 305 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence 35556777778888877777765533 455443
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.23 E-value=9.1e-11 Score=94.28 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=89.4
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|+|++|+..|.+++.+.|.. ..+++++|.++..+|++++|+..+.++++
T Consensus 194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346788999999999999999999999999997664 35899999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHH-HHHHHHHHh
Q 028428 138 LEPLNVKALYRRSQAHLKTSELEKA-EADIKRALT 171 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~a~~ 171 (209)
++|++..+++.++.++..+|++++| ...|++++.
T Consensus 259 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 456666654
No 137
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.22 E-value=2.2e-11 Score=79.80 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=36.0
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028428 113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVK-ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
.++|.+++..|++++|+..+.+++..+|.+.. +++.+|.++..+|++++|+..|+++++++|++..+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455555555555555555555555555555 555555555555555555555555555555554444
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.22 E-value=2.3e-10 Score=78.06 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=86.5
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
....+.++|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..++++++++|.+..+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028428 188 DKQREYAKYQAEIFGTM 204 (209)
Q Consensus 188 ~~~~~~~~~~~~~~~~~ 204 (209)
...++..+... .|.+.
T Consensus 95 ~~~~~~~~A~~-~~~~~ 110 (133)
T 2lni_A 95 EAMKDYTKAMD-VYQKA 110 (133)
T ss_dssp HHTTCHHHHHH-HHHHH
T ss_pred HHHhhHHHHHH-HHHHH
Confidence 88877665533 44443
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.22 E-value=2.9e-10 Score=75.75 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=85.5
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
...+..+|.++...|++++|+..+.+++..+|.++.+++.+|.++..+|++++|+..+++++.++|+++.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhh
Q 028428 189 KQREYAKYQAEIFGTM 204 (209)
Q Consensus 189 ~~~~~~~~~~~~~~~~ 204 (209)
..++..+... .|.+.
T Consensus 84 ~~~~~~~A~~-~~~~~ 98 (118)
T 1elw_A 84 FLNRFEEAKR-TYEEG 98 (118)
T ss_dssp HTTCHHHHHH-HHHHH
T ss_pred HHhhHHHHHH-HHHHH
Confidence 8777665533 44443
No 140
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.22 E-value=1.3e-10 Score=75.96 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=54.6
Q ss_pred HHHH-HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028428 107 LRLS-CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 107 ~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
.... ++.++|.++..+|++++|+..+.+++.++|++..++++ +.+.+|...|+++...+|+++
T Consensus 32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 3456 89999999999999999999999999999999988755 667888888888888877653
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.22 E-value=8.8e-11 Score=77.68 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=84.6
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 028428 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKD 188 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~ 188 (209)
++..+|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..++++++++|. +..+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred HH-HHHHHHHHHHHHhhh
Q 028428 189 KQ-REYAKYQAEIFGTML 205 (209)
Q Consensus 189 ~~-~~~~~~~~~~~~~~~ 205 (209)
.+ ++..+.. ..+.+..
T Consensus 88 ~~~~~~~~A~-~~~~~~~ 104 (112)
T 2kck_A 88 YIEGKEVEAE-IAEARAK 104 (112)
T ss_dssp TCSSCSHHHH-HHHHHHG
T ss_pred HHhCCHHHHH-HHHHHHh
Confidence 77 7666543 3444443
No 142
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=3.7e-10 Score=91.19 Aligned_cols=130 Identities=15% Similarity=0.053 Sum_probs=107.8
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|++++|+..|.+++.+.+.... ......++.++|.++..+|++++|+..+.+++.
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34567888999999999999999999999999887554 134566899999999999999999999999998
Q ss_pred hCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHH
Q 028428 138 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 138 ~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~~~~~ 196 (209)
+.|.. ..+++.+|.++..+|++++|+..+++++.+.+.. ..+...+..+....++..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 87655 7789999999999999999999999999885543 55666777777766665544
No 143
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=2.3e-10 Score=90.51 Aligned_cols=119 Identities=11% Similarity=0.006 Sum_probs=74.8
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
..+...|..+...|++++|+..|.+++.+.|.++. .+|.++|.++...|++++|+..+.++++.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 45667788888888899999999998887554331 1466666666666666666666666666666
Q ss_pred CchHHHHHHHHHHh-ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028428 141 LNVKALYRRSQAHL-KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 193 (209)
Q Consensus 141 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~ 193 (209)
.+..++...+.... .+|++++|...|+++++++|+++.++..+..+....+..
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 219 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 219 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 66555554444432 246666666666666666666666665555555444333
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.20 E-value=3e-10 Score=83.42 Aligned_cols=129 Identities=10% Similarity=0.097 Sum_probs=103.1
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|++++|+..|.+++.+...... ......++.++|.++..+|++++|+..+.+++.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999998765443 2445678999999999999999999999999988
Q ss_pred ---CC----CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCHH----HHHHHHHHHHHHHHHHHH
Q 028428 139 ---EP----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNRV----VKLVYMELKDKQREYAKY 196 (209)
Q Consensus 139 ---~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--~~~~----~~~~l~~l~~~~~~~~~~ 196 (209)
.+ ....+++++|.++..+|++++|+..+++++.+.+ .+.. +...+..+....++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 33 2356799999999999999999999999997743 2322 235566666655555443
No 145
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.20 E-value=4.8e-10 Score=78.64 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=92.5
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|++++|+.+|.+++.+.+.... ......++.++|.++..+|++++|+..+.+++.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999876543 2345678999999999999999999999999977
Q ss_pred CC------CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028428 139 EP------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 139 ~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
.+ ....+++.+|.++..+|++++|...+++++++...
T Consensus 119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 32 22567899999999999999999999999987543
No 146
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.19 E-value=2.4e-10 Score=89.46 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=102.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 138 (209)
+..+...|..++..|++++|+..|.+++...|.++ .....++..+|.++...|++++|+..+.+++.+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999855432 234568999999999999999999999999987
Q ss_pred -----CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHH
Q 028428 139 -----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE 192 (209)
Q Consensus 139 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~ 192 (209)
.|....+++.+|.++..+|++++|+..+++++.+.|.. ..+...+..+....+.
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 45567899999999999999999999999999986543 2366667777666666
No 147
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.18 E-value=3.1e-10 Score=77.50 Aligned_cols=93 Identities=24% Similarity=0.206 Sum_probs=82.9
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch---HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 028428 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNV---KALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYM 184 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~ 184 (209)
.++++|.+++..|+|++|+..+.+++..+|++. .+++.+|.++..+|++++|+..|++++..+|++ +.+...+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 478899999999999999999999999999988 899999999999999999999999999999999 88899999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 028428 185 ELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~ 204 (209)
.+...+++..+.. ..|.+.
T Consensus 84 ~~~~~~g~~~~A~-~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQ-QTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHH-HHHHHH
T ss_pred HHHHHcCCHHHHH-HHHHHH
Confidence 9988877766553 345444
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.16 E-value=9.4e-10 Score=74.46 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=87.0
Q ss_pred HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028428 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185 (209)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 185 (209)
+.....+..+|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++.++|+++.+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 028428 186 LKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~ 204 (209)
+....++..+... .|.+.
T Consensus 89 ~~~~~~~~~~A~~-~~~~~ 106 (131)
T 2vyi_A 89 ALSSLNKHVEAVA-YYKKA 106 (131)
T ss_dssp HHHHTTCHHHHHH-HHHHH
T ss_pred HHHHhCCHHHHHH-HHHHH
Confidence 8888777665533 44443
No 149
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.16 E-value=2.3e-10 Score=92.40 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=103.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 138 (209)
+..+...|..++..|++++|+..|.+++...|.++ .....++..+|.++...|++++|+..+.+++.+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999855432 234668999999999999999999999999887
Q ss_pred -----CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHH
Q 028428 139 -----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE 192 (209)
Q Consensus 139 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~ 192 (209)
.|....+++.+|.++..+|++++|+..+.+++.+.|.. ..+...+..+....+.
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 45557899999999999999999999999999987643 3466677777776666
No 150
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=8.4e-10 Score=86.34 Aligned_cols=138 Identities=14% Similarity=0.048 Sum_probs=111.8
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|++++|+..|.+++.+.+.... ......++.++|.++...|++++|+..+.+++.
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567888999999999999999999999998876543 234456899999999999999999999999998
Q ss_pred hCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 138 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 138 ~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
+.+.. ..+++.+|.++..+|++++|...+++++.+.|.. ..+...+..+....++..+... .|.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~ 330 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH-FAEKHL 330 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHH
Confidence 86654 7789999999999999999999999999886532 4466677777777777665533 555443
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.16 E-value=7.1e-10 Score=78.64 Aligned_cols=96 Identities=21% Similarity=0.158 Sum_probs=86.3
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
....+.++|.+++..|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++.++|.++.+...+..+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028428 188 DKQREYAKYQAEIFGTM 204 (209)
Q Consensus 188 ~~~~~~~~~~~~~~~~~ 204 (209)
..+++..+... .|.+.
T Consensus 92 ~~~~~~~~A~~-~~~~a 107 (166)
T 1a17_A 92 MALGKFRAALR-DYETV 107 (166)
T ss_dssp HHTTCHHHHHH-HHHHH
T ss_pred HHhccHHHHHH-HHHHH
Confidence 88777665533 44444
No 152
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.14 E-value=1.6e-09 Score=83.59 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=55.0
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHHHHHHh
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVL 136 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al 136 (209)
..+...|..++..|++++|+..|.+++.. .+ ..++.++|.++.. .+++++|+..+.+++
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KE---------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TC---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---------------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 34455666666666666666666666651 11 1234555555555 555555555555555
Q ss_pred hhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 137 ELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
+.+ ++.+++.+|.+|.. .+++++|+..|+++++++ ++.+...+..+...
T Consensus 70 ~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 70 DLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD 122 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence 443 44455555555555 555555555555554442 44444444444433
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-09 Score=76.12 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=85.4
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 185 (209)
...+..+|.+++..|+|++|+..+.+++..+|++ ..+++.+|.++..+|++++|+..+++++.++|++..+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 4578999999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 028428 186 LKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~ 204 (209)
+...+++..+... .|.+.
T Consensus 108 ~~~~~~~~~~A~~-~~~~a 125 (148)
T 2dba_A 108 ALEKLGRLDQAVL-DLQRC 125 (148)
T ss_dssp HHHHHTCHHHHHH-HHHHH
T ss_pred HHHHcCCHHHHHH-HHHHH
Confidence 9888877766533 44443
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.12 E-value=1.6e-09 Score=72.67 Aligned_cols=95 Identities=27% Similarity=0.340 Sum_probs=84.7
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
..++..+|.++...|++++|+..+.+++..+|.+..+++.+|.++...|++++|+..+++++.++|.+......+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhh
Q 028428 189 KQREYAKYQAEIFGTM 204 (209)
Q Consensus 189 ~~~~~~~~~~~~~~~~ 204 (209)
..+...+.. ..|.++
T Consensus 89 ~~~~~~~A~-~~~~~~ 103 (125)
T 1na0_A 89 KQGDYDEAI-EYYQKA 103 (125)
T ss_dssp HTTCHHHHH-HHHHHH
T ss_pred HhcCHHHHH-HHHHHH
Confidence 777665543 344444
No 155
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.12 E-value=6e-10 Score=88.03 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=94.8
Q ss_pred HHHHHHHhHHHH-------HcCCH-------HHHHHHHHHHHH-HHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC
Q 028428 60 CERKKHDGNLLF-------RAGKY-------WRASKKYEKAAK-IIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED 124 (209)
Q Consensus 60 a~~~~~~g~~~~-------~~~~~-------~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 124 (209)
+..+...|..+. ..|++ ++|+..|.+|+. +.|.. ..+|.++|.++...|+
T Consensus 50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---------------~~~~~~~~~~~~~~~~ 114 (308)
T 2ond_A 50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCC
Confidence 444666666655 35775 999999999999 55543 3479999999999999
Q ss_pred HHHHHHHHHHHhhhCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028428 125 YSETSSLCTKVLELEPLNVK-ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+++|+..|++++.++|.+.. +|+.+|.++...|++++|...|+++++++|.+..+......+
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999999999987 999999999999999999999999999999887766544444
No 156
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=6.3e-10 Score=78.78 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc---CHHHHHHHHHHHhhhC-C-CchHHHHHHH
Q 028428 76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVLELE-P-LNVKALYRRS 150 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~a 150 (209)
...+...|.+.+...+ .+ ..+.++.|+|+.+.+ +..+++..++.+++.+ | .+.+++|.+|
T Consensus 14 l~~~~~~y~~e~~~~~--~~-------------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS--VS-------------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHTTC--CC-------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC--Cc-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 4556677777765322 11 457899999999988 7779999999999998 7 5799999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028428 151 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 151 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
.+++++++|++|..+++++++++|+|..+......+.+++.+
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888776643
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=7.1e-10 Score=86.80 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=83.8
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
...+.++|.+++..|+|++|+..+.+++..+|++..+++++|.+|..+|++++|+.+++++++++|++..+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 028428 189 KQREYAKYQA 198 (209)
Q Consensus 189 ~~~~~~~~~~ 198 (209)
.+++..+...
T Consensus 84 ~~g~~~~A~~ 93 (281)
T 2c2l_A 84 EMESYDEAIA 93 (281)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 8877766543
No 158
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.11 E-value=4.5e-10 Score=93.08 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=95.7
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--cCHHHHHHHHHHHhh
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--EDYSETSSLCTKVLE 137 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~ 137 (209)
+..+.+.|..++..|++++|+.+|.+++.+.+....... .....++.++|.++... ++|++|+..|++++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR-------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC-------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc-------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 445678899999999999999999999998776432110 01245678888777765 469999999999999
Q ss_pred hCCCchHHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQAHLK---TSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
++|+++.+++.+|.++.. .++.++|+..|+++++++|++..+...+....
T Consensus 167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 999999999999988654 46678899999999999999988877766543
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.11 E-value=2.4e-09 Score=78.93 Aligned_cols=96 Identities=11% Similarity=-0.054 Sum_probs=86.0
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch----------------HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV----------------KALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
....+.++|.+++..|+|++|+..+.+++.+.|.++ .+++++|.++..+|++++|+.++++++.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999887 8999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 172 IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 172 l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
++|++..+...+..+...++++.+... .|.+.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~a 148 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKE-NLYKA 148 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHH-HHHHH
Confidence 999999999999999988887766533 44443
No 160
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.10 E-value=2.3e-09 Score=89.01 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=95.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 138 (209)
+....+.+......|+|++|+..|.+++.+........ .+..+..++|+|.+|..+|+|++|+..+.+++.+
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~ 370 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY 370 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 44455556666667899999999999999865422111 1345678999999999999999999999999965
Q ss_pred ----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHH
Q 028428 139 ----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKLVYMELK 187 (209)
Q Consensus 139 ----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~l~ 187 (209)
.|++ ...++++|.+|..+|++++|+..|++|+++ -|+++.+......+.
T Consensus 371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 4554 567999999999999999999999999986 588888877555543
No 161
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.10 E-value=8.1e-10 Score=89.86 Aligned_cols=131 Identities=16% Similarity=0.106 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhHHHHHcCC-----------------HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHH
Q 028428 57 IEACERKKHDGNLLFRAGK-----------------YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK 119 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~-----------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 119 (209)
...+..+...|..+...|+ ++.|+..|.+++.+.+.... ......++.++|.++
T Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~ 233 (411)
T 4a1s_A 163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD---------RGAQGRACGNLGNTY 233 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Confidence 4456678889999999999 99999999999988765433 134566789999999
Q ss_pred HhhcCHHHHHHHHHHHhhhCCCchH------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHH
Q 028428 120 LKLEDYSETSSLCTKVLELEPLNVK------ALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELK 187 (209)
Q Consensus 120 ~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~ 187 (209)
..+|++++|+..+.+++.+.+.... +++.+|.+|..+|++++|+..+++++.+.|.. ..+...+..+.
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 313 (411)
T 4a1s_A 234 YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY 313 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988765433 88899999999999999999999998887643 45556666666
Q ss_pred HHHHHHHHH
Q 028428 188 DKQREYAKY 196 (209)
Q Consensus 188 ~~~~~~~~~ 196 (209)
...++..+.
T Consensus 314 ~~~g~~~~A 322 (411)
T 4a1s_A 314 TLLHEFNTA 322 (411)
T ss_dssp HHTTCHHHH
T ss_pred HHcCCHHHH
Confidence 555554443
No 162
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.09 E-value=8e-11 Score=94.72 Aligned_cols=103 Identities=10% Similarity=-0.002 Sum_probs=56.7
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|..++..|+|++|+..|.+++.+.|.. ..+|+++|.+|..+|+|++|+.++.+++.++|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---------------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 67899999999999999999999999987653 458999999999999999999999999999999
Q ss_pred chHHHHHHHHH-HhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028428 142 NVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRVV 179 (209)
Q Consensus 142 ~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~ 179 (209)
+..++..++.+ ....+..+.+...|++++...|+++..
T Consensus 297 ~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 297 DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ---------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 99999999988 445667888999999999999987654
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.08 E-value=9.6e-10 Score=74.52 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=83.1
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-------RVVKL 181 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-------~~~~~ 181 (209)
...+..+|.++...|++++|+..+.+++..+|.++.+++.+|.++...|++++|+..+++++.+.|.+ ..+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999998877 78888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 028428 182 VYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 182 ~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
.+..+....+...+.. ..|.+.
T Consensus 84 ~la~~~~~~~~~~~A~-~~~~~~ 105 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAI-HFYNKS 105 (131)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHH
T ss_pred HHHHHHHHhccHHHHH-HHHHHH
Confidence 8888887777666543 244443
No 164
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=2.5e-09 Score=91.83 Aligned_cols=116 Identities=11% Similarity=0.008 Sum_probs=106.0
Q ss_pred HHHHHHHhHHHHHcCC----------HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc--CHHH
Q 028428 60 CERKKHDGNLLFRAGK----------YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--DYSE 127 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~ 127 (209)
...+..+|..+...|+ +++|+..|.+++...|... .+|+.++.+...++ +|++
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y---------------~aW~hR~w~l~~l~~~~~~~ 127 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---------------GTWHHRCWLLSRLPEPNWAR 127 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcccccHHH
Confidence 4557778888887777 9999999999999877654 48999999999999 7799
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028428 128 TSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 128 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
++..++++++++|.|..+|..++.++..+| .+++++.++.++++.+|.|..++.....+...+
T Consensus 128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 999999999999999999999999999999 999999999999999999999999999998775
No 165
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.06 E-value=1.6e-09 Score=72.11 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=73.1
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhC-------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 028428 110 SCYLNNAACKLKLEDYSETSSLCTKVLELE-------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV 182 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 182 (209)
.-++.+|..++..++|..|+..+..|++.. +....++..+|.|++++|+++.|+..++++++++|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 347899999999999999999999999863 3568889999999999999999999999999999999999888
Q ss_pred HHHHHHHHHH
Q 028428 183 YMELKDKQRE 192 (209)
Q Consensus 183 l~~l~~~~~~ 192 (209)
+..+...+..
T Consensus 86 ~~~~~~~~~~ 95 (104)
T 2v5f_A 86 LKYFEYIMAK 95 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8766655443
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.05 E-value=1e-10 Score=98.44 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=88.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|++++|+..|.+|+++.|.. ..++.++|.+|..+|++++|+..+.++++++
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999999986654 3479999999999999999999999999999
Q ss_pred CCchHHHHHHHHH--HhccCCHHHHHHHHH-----------HHHhcCCCC
Q 028428 140 PLNVKALYRRSQA--HLKTSELEKAEADIK-----------RALTIDPNN 176 (209)
Q Consensus 140 p~~~~~~~~~a~~--~~~~~~~~~A~~~~~-----------~a~~l~p~~ 176 (209)
|++..++..++.+ +...|++++|+..++ +++.++|+.
T Consensus 105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999998 999999999999999 888887753
No 167
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.05 E-value=2.6e-09 Score=83.49 Aligned_cols=110 Identities=12% Similarity=0.006 Sum_probs=92.2
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC--
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-- 139 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 139 (209)
..+..|..+++.++|++|+..|..++..- . ..+...+++++|.++..+|++++|+..|++++...
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d---------~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~ 203 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP----D---------KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG 203 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----C---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC----C---------cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence 56788899999999999999998765531 1 01124579999999999999999999999998654
Q ss_pred CC-chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028428 140 PL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185 (209)
Q Consensus 140 p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 185 (209)
|. ...+++++|.|+..+|+.++|...|++++..+|+ +.+...|..
T Consensus 204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 55 6789999999999999999999999999999999 888777653
No 168
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.03 E-value=4.2e-09 Score=70.11 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=71.3
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|+|..|+..|..|+...+...... .....++.++|.|++++|+++.|+..+.+++.++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999876542110 1246789999999999999999999999999999
Q ss_pred CCchHHHHHHH
Q 028428 140 PLNVKALYRRS 150 (209)
Q Consensus 140 p~~~~~~~~~a 150 (209)
|++..+..+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 99999888876
No 169
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=6e-09 Score=89.43 Aligned_cols=136 Identities=9% Similarity=-0.038 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCH-HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC--------
Q 028428 54 HEKIEACERKKHDGNLLFRAGKY-WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-------- 124 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------- 124 (209)
..+.+...............|++ ++|+..|.+++.+.|... .+|+.++.+...+++
T Consensus 22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~---------------taW~~R~~~l~~l~~~~~~~~~~ 86 (567)
T 1dce_A 22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESA 86 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHhcccccchhhhh
Confidence 34444444444555555666665 577999999999977653 489999999999998
Q ss_pred --HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028428 125 --YSETSSLCTKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI 200 (209)
Q Consensus 125 --~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 200 (209)
+++++..+++++..+|.+..+|+.|+.++..++ ++++|+..+.++++++|.|..++.....+...+....+.+-.-
T Consensus 87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999999999999999999999 7899999999999999999999999998887776222333434
Q ss_pred HHhh
Q 028428 201 FGTM 204 (209)
Q Consensus 201 ~~~~ 204 (209)
+.++
T Consensus 167 ~~~~ 170 (567)
T 1dce_A 167 TDSL 170 (567)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 4444
No 170
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.02 E-value=1e-08 Score=85.10 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=97.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 138 (209)
+.........+..+|+|++|+..|.+++.......... ....+..+.|+|.+|..+|+|++|+..+.+++.+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~ 359 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY 359 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Confidence 44455566677889999999999999997644321111 1345778999999999999999999999999965
Q ss_pred ----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHH
Q 028428 139 ----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKLVYMELKDK 189 (209)
Q Consensus 139 ----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~l~~~ 189 (209)
.|++ ...++++|.+|..+|++++|+..|++|+++ -|+++.+...+..+.+.
T Consensus 360 ~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~ 422 (429)
T 3qwp_A 360 RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC 422 (429)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 4444 567999999999999999999999999976 58888877766555443
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.01 E-value=6.1e-09 Score=76.27 Aligned_cols=109 Identities=14% Similarity=0.030 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..+...|++++|+..|.+++.+....+.. ......++.++|.++..+|++++|+..+.+++
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4456778899999999999999999999999997755422 12456789999999999999999999999999
Q ss_pred hhCCC--c----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028428 137 ELEPL--N----VKALYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 137 ~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
.+.+. + ..++..+|.++..+|++++|...+++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 76321 1 3457899999999999999999999999874
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.01 E-value=5.6e-10 Score=75.53 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=70.5
Q ss_pred hhcCHHHHHHHHHHHhhh---CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028428 121 KLEDYSETSSLCTKVLEL---EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 197 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~ 197 (209)
.+|++++|+..+.+++++ +|++..+++.+|.+|..+|++++|+..|+++++++|+++.+...+..+...+++..+..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999998888877654
Q ss_pred HHHHHhh
Q 028428 198 AEIFGTM 204 (209)
Q Consensus 198 ~~~~~~~ 204 (209)
. .|.+.
T Consensus 82 ~-~~~~a 87 (117)
T 3k9i_A 82 E-LLLKI 87 (117)
T ss_dssp H-HHHHH
T ss_pred H-HHHHH
Confidence 3 34433
No 173
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.01 E-value=1.8e-08 Score=77.66 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=68.3
Q ss_pred HHHHHHhHHHHH----cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHHH
Q 028428 61 ERKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLC 132 (209)
Q Consensus 61 ~~~~~~g~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~ 132 (209)
..+...|..+.. .+++++|+..|.+++.... ..++.++|.+|.. .+++++|+..+
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 101 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-----------------SNGCHLLGNLYYSGQGVSQNTNKALQYY 101 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHhCCCCcccCHHHHHHHH
Confidence 445667777777 7777777777777776521 2356666666666 66666666666
Q ss_pred HHHhhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 133 TKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 133 ~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
.++++.+ ++.+++.+|.+|.. .+++++|+.+|++++++. ++.+...+..+...
T Consensus 102 ~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 102 SKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence 6666653 56666666666666 666666666666666654 34455555554443
No 174
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=1.2e-08 Score=81.02 Aligned_cols=116 Identities=12% Similarity=-0.099 Sum_probs=88.4
Q ss_pred HHHHHHHhHHHHHcC--CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHH----Hhh---cCHHHHHH
Q 028428 60 CERKKHDGNLLFRAG--KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK----LKL---EDYSETSS 130 (209)
Q Consensus 60 a~~~~~~g~~~~~~~--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~---~~~~~A~~ 130 (209)
...+..+|..+...+ .+++++..+..++...|.... +|+.++.+. ..+ +++++++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~---------------aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---------------IWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---------------HHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---------------HHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 455788888888888 999999999999998776543 577777777 555 67777777
Q ss_pred HHHHHhhhCCCchHHHHHHHHHHhccCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028428 131 LCTKVLELEPLNVKALYRRSQAHLKTSELE--KAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
.+++++..+|.|..+|+.++.++..++.++ +++..+.++++.+|.|..++.....+...+
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777777777777777777777777777777 777777777777777777777666665544
No 175
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=8.3e-09 Score=77.24 Aligned_cols=129 Identities=12% Similarity=-0.032 Sum_probs=85.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc-----------CCC--ChHHH-----HHHHHHHHHHHhHHHHHHHh
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-----------HSF--TDDEK-----HQANGLRLSCYLNNAACKLK 121 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~-----------~~~--~~~~~-----~~~~~~~~~~~~~~a~~~~~ 121 (209)
+..+...|..++..+++++|+..|.+++...... ... ..++- .-...-...+++++|.+|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 4556667777777777777777777776542110 000 00000 00112234567888888877
Q ss_pred ----hcCHHHHHHHHHHHhhhCC--CchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 122 ----LEDYSETSSLCTKVLELEP--LNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 122 ----~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
.+++++|+..+.++++.+| .++.+++++|.+|.. .+++++|+.+|+++.++ |.++.+...+..+...
T Consensus 98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 7788888888888888877 357888888888888 77888888888888877 6666677777776643
No 176
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=7.4e-09 Score=77.51 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=59.2
Q ss_pred HHHHhHHHHHHHhhc----CHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCC--CHH
Q 028428 109 LSCYLNNAACKLKLE----DYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPN--NRV 178 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~--~~~ 178 (209)
..+++++|.+|.. + ++++|+..+.++++ +.++.+++++|.+|.. .+++++|+.+|+++.+..|. ++.
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 126 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD 126 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence 4567788888877 6 78888888888844 5677888888888887 77888888888888887773 477
Q ss_pred HHHHHHHHHHH
Q 028428 179 VKLVYMELKDK 189 (209)
Q Consensus 179 ~~~~l~~l~~~ 189 (209)
+...+..+...
T Consensus 127 a~~~Lg~~y~~ 137 (212)
T 3rjv_A 127 AQMLLGLIYAS 137 (212)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777777655
No 177
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=1e-08 Score=81.38 Aligned_cols=116 Identities=10% Similarity=0.004 Sum_probs=102.4
Q ss_pred HHHHHhHHH----HHc---CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHH--HHHHHH
Q 028428 62 RKKHDGNLL----FRA---GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS--ETSSLC 132 (209)
Q Consensus 62 ~~~~~g~~~----~~~---~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~ 132 (209)
.+..++..+ ... +++.+++..+.+++...|... .+|+.++.+...++.++ +++..+
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny---------------~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH---------------HVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcccChHHHHHHH
Confidence 355556655 444 789999999999999877654 47999999999999999 999999
Q ss_pred HHHhhhCCCchHHHHHHHHHHhccCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028428 133 TKVLELEPLNVKALYRRSQAHLKTSE------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 133 ~~al~~~p~~~~~~~~~a~~~~~~~~------~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
+++++.+|.|..+|..++.++..++. +++++.++.+++.++|+|.+++..+..+....+.
T Consensus 170 ~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 170 DKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 99999999999999999999999998 9999999999999999999999999988776543
No 178
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=1.1e-09 Score=79.47 Aligned_cols=115 Identities=11% Similarity=-0.010 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh--------------HHH------HHHHHHHHHHHhHH
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD--------------DEK------HQANGLRLSCYLNN 115 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~--------------~~~------~~~~~~~~~~~~~~ 115 (209)
.......+...|..+...|++++|+..|.+++...| ++.... +.. -...+....++.++
T Consensus 36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l 114 (176)
T 2r5s_A 36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL 114 (176)
T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence 344567788999999999999999999999887755 221100 000 01122245689999
Q ss_pred HHHHHhhcCHHHHHHHHHHHhhhCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 116 AACKLKLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 116 a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
|.++...|++++|+..+.++++.+|++ ..+++.+|.++..+|++++|+..|++++.
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999999999986 56999999999999999999999999874
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.94 E-value=6.6e-09 Score=84.60 Aligned_cols=95 Identities=22% Similarity=0.206 Sum_probs=85.1
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhh----------------hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLE----------------LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
...+.++|.+++..|+|++|+..|.+++. ++|.+..+++++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45689999999999999999999999998 78888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 173 DPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 173 ~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+|++..+...+..+...++++.+... .|.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~-~l~~A 333 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALA-DLKKA 333 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHH-HHHHH
Confidence 99999999999999988887776533 44443
No 180
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.94 E-value=4.9e-08 Score=78.52 Aligned_cols=128 Identities=12% Similarity=0.106 Sum_probs=98.1
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|+++.|+..|.+++.+.+..... .....++.++|.++...|++++|+..+.+++.+
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45567788999999999999999999999988765441 233456789999999999999999999999876
Q ss_pred C--------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHHH
Q 028428 139 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-----RVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 139 ~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-----~~~~~~l~~l~~~~~~~~~ 195 (209)
. |....++..+|.++...|++++|...+++++.+.|.. ..+...+..+........+
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 4 3345677889999999999999999999999887752 2344555555555444433
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.90 E-value=8.1e-08 Score=76.88 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC--HHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028428 76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED--YSETSSLCTKVLELEPLNVKALYRRSQAH 153 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 153 (209)
+.+++..+..++...|... .+|+.++.+...++. +++++..++++++.+|.|..+|..++.++
T Consensus 90 l~~EL~~~~~~L~~~PKny---------------~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSY---------------GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7899999999999877654 489999999999994 99999999999999999999999999999
Q ss_pred hccCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028428 154 LKTSE-LEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 154 ~~~~~-~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
..+|. +++++.++.++++.+|.|..++.....+...+
T Consensus 155 ~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 99999 69999999999999999999999999888776
No 182
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.89 E-value=1.1e-08 Score=86.50 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=63.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..+...|++++|...|.+++...|..+. .+|.+.+.++...|++++|+..+.++++..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 344566777778899999999999999987554321 134444444444555555555555555544
Q ss_pred CCchHHHHHHHHH-HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 140 p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
|.....+...+.. +...|++++|...|+++++.+|+++.++..+..+.
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~ 435 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 435 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4444444433322 22344555555555555555554444444444443
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.88 E-value=1.1e-08 Score=73.05 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=66.6
Q ss_pred hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028428 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL----------EKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
+.+.|++|+..+.++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++..++..+..+...+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999999876 5999999999999999999999999999877
Q ss_pred H
Q 028428 191 R 191 (209)
Q Consensus 191 ~ 191 (209)
.
T Consensus 94 g 94 (158)
T 1zu2_A 94 A 94 (158)
T ss_dssp H
T ss_pred c
Confidence 5
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.88 E-value=9.4e-09 Score=67.61 Aligned_cols=80 Identities=13% Similarity=0.022 Sum_probs=65.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|++++|+..|.+++.+.|..+. +|.++|.+|..+|++++|+..+.+++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------------TYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456789999999999999999999999999777543 79999999999999999999999999987
Q ss_pred CCc--hHHHHHHHHHHh
Q 028428 140 PLN--VKALYRRSQAHL 154 (209)
Q Consensus 140 p~~--~~~~~~~a~~~~ 154 (209)
|.+ ..+...+...+.
T Consensus 72 ~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 72 REEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHH
Confidence 654 333333444433
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=5.2e-08 Score=78.41 Aligned_cols=120 Identities=13% Similarity=0.015 Sum_probs=103.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhhCCCchHHHHHH
Q 028428 71 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLNVKALYRR 149 (209)
Q Consensus 71 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~ 149 (209)
...+..++|+..+.++|.+.|... .+|+.++.+...++ .+++++..++.++..+|.+..+|+.|
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~y---------------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHY---------------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhH---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 344556789999999999977753 47999999999999 59999999999999999999999999
Q ss_pred HHHHhcc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhh
Q 028428 150 SQAHLKT-S-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA-------KYQAEIFGTML 205 (209)
Q Consensus 150 a~~~~~~-~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~-------~~~~~~~~~~~ 205 (209)
+.++..+ + ++++++..+.++++.+|.|..++.....+-..+.... ..+-..+.+++
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 9999998 8 9999999999999999999999999999888877655 24455555554
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.87 E-value=3.5e-08 Score=78.97 Aligned_cols=126 Identities=9% Similarity=-0.067 Sum_probs=102.0
Q ss_pred HHHhHHHHHcCCHH-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC----------HHHHHHHH
Q 028428 64 KHDGNLLFRAGKYW-RASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED----------YSETSSLC 132 (209)
Q Consensus 64 ~~~g~~~~~~~~~~-~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~ 132 (209)
...-....+.|.+. +|+..+.++|.+.|... .+|+.++.+...++. +++++..+
T Consensus 33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~y---------------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~ 97 (331)
T 3dss_A 33 TQAVFQKRQAGELDESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESAALVKAELGFL 97 (331)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 33333444677776 79999999999877643 478999999988876 78999999
Q ss_pred HHHhhhCCCchHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 133 TKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 133 ~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+.++..+|.+..+|+.++.++..++ ++++++..+.++++++|.|..++.....+-..+...-+.+-.-+.++
T Consensus 98 ~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~ 171 (331)
T 3dss_A 98 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 171 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 9999999999999999999999999 49999999999999999999999998888776554222333344443
No 187
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.87 E-value=2.9e-08 Score=64.72 Aligned_cols=71 Identities=23% Similarity=0.154 Sum_probs=63.6
Q ss_pred HHHHhHHHHHHHhhcC---HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028428 109 LSCYLNNAACKLKLED---YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 179 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 179 (209)
..++..+|.+++..++ .++|...+.+++.++|+++.+++.+|.+++..|+|++|+..++++++.+|.++..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 4578888888876555 7999999999999999999999999999999999999999999999999985443
No 188
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=1.6e-08 Score=79.20 Aligned_cols=113 Identities=10% Similarity=-0.111 Sum_probs=91.6
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC--------------CChHH-----HHHHHHHHHHHHhHHHHHH
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS--------------FTDDE-----KHQANGLRLSCYLNNAACK 119 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~--------------~~~~~-----~~~~~~~~~~~~~~~a~~~ 119 (209)
....+...|..+...|++++|+..|.+++...|.... ..... .-...+....+++++|.++
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l 229 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL 229 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3677889999999999999999999998776542110 00000 0112233456899999999
Q ss_pred HhhcCHHHHHHHHHHHhhhCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 120 LKLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 120 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
...|++++|+..+.+++..+|++ ..++.+++.++..+|+.++|...|++++.
T Consensus 230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999999 88999999999999999999999999875
No 189
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=5.2e-08 Score=78.44 Aligned_cols=132 Identities=10% Similarity=-0.055 Sum_probs=106.7
Q ss_pred HHHHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhcCC---------------CChHHHHHH------HHHHHHHHhHHH
Q 028428 59 ACERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHS---------------FTDDEKHQA------NGLRLSCYLNNA 116 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~~~---------------~~~~~~~~~------~~~~~~~~~~~a 116 (209)
....+..+|..+...| .+++++..+..++...|.... ...++..-. ++-...+|+.++
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~ 166 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLH 166 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3677888888888888 599999999999987765321 111221111 222345889999
Q ss_pred HHHHhhcCHH--------HHHHHHHHHhhhCCCchHHHHHHHHHHhccCC-------HHHHHHHHHHHHhcCCCCHHHHH
Q 028428 117 ACKLKLEDYS--------ETSSLCTKVLELEPLNVKALYRRSQAHLKTSE-------LEKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 117 ~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
.+...++.++ +++..++++++.+|.|..+|..++.++..++. +++++.++.+++.++|+|..++.
T Consensus 167 wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~ 246 (349)
T 3q7a_A 167 WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWN 246 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999888 99999999999999999999999999999997 79999999999999999999999
Q ss_pred HHHHHHHHH
Q 028428 182 VYMELKDKQ 190 (209)
Q Consensus 182 ~l~~l~~~~ 190 (209)
.+..+....
T Consensus 247 Ylr~Ll~~~ 255 (349)
T 3q7a_A 247 YLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 988876643
No 190
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.78 E-value=8.1e-08 Score=77.25 Aligned_cols=133 Identities=10% Similarity=-0.013 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028428 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 133 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 133 (209)
.+....+......|..++..|+++.|+..+.+++...+.... .....++.++|.++...|++++|+..+.
T Consensus 8 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 77 (373)
T 1hz4_A 8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQ 77 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch----------hHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445667778899999999999999999999997653221 2345678999999999999999999999
Q ss_pred HHhhhCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHHHH
Q 028428 134 KVLELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDP--------NNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 134 ~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--------~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+++.+.|.. ..+++.+|.++...|++++|+..+++++.+.+ ....+...+..+.....+..+.
T Consensus 78 ~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 78 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 999876543 23478899999999999999999999998752 2334555566666655555444
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.77 E-value=1.8e-07 Score=79.20 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-------hcCHH-------HHHHHHHHHhh-hCCC
Q 028428 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-------LEDYS-------ETSSLCTKVLE-LEPL 141 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~al~-~~p~ 141 (209)
..|+..|.+|+...|..+ .+|.+.|..+.. .|+++ +|+..+++++. ++|+
T Consensus 255 ~~a~~~y~~al~~~p~~~---------------~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHP---------------DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 478889999999877654 479999999886 79987 99999999997 8999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR-VVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
+..+++.+|.++...|++++|...|++++++.|.++ .++..+..+..+.+..... +..|.+..
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~Al 383 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG-RMIFKKAR 383 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999986 5888888877776665543 55666554
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.76 E-value=5.2e-08 Score=65.26 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028428 126 SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 126 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+.|+..+.+++..+|++..+++.+|.++...|++++|+..|++++.++|++..+...+..+....++..+.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999998887766654
No 193
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=1.1e-07 Score=74.39 Aligned_cols=126 Identities=12% Similarity=-0.025 Sum_probs=101.8
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
....+..+...|+|++|...|..++...|. .. +.+.+|.++++.++|++|+..+..++...++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSE---------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 346788899999999999999887764332 23 68999999999999999999999887764332
Q ss_pred --hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 143 --VKALYRRSQAHLKTSELEKAEADIKRALTID--PN-NRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 143 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~--p~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
..+++.+|.++..+|++++|+..|++++.-. |. ..++...+..+..++....+. ...|.++.
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA-~~~l~~a~ 235 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA-VALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Confidence 4589999999999999999999999998654 65 567888888888888877655 44666654
No 194
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.69 E-value=2.9e-07 Score=62.91 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHH---HHHHHHHHhhhC-C-CchHHHHH
Q 028428 74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE---TSSLCTKVLELE-P-LNVKALYR 148 (209)
Q Consensus 74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~ 148 (209)
.....+...|...+...+ +. ..+-++.|+++.+...... +|..++.++.-+ | ...+.+|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~--~s-------------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~ 79 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS--VS-------------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC--CC-------------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC--Cc-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 344566677777765322 22 4578999999998887776 999999999887 5 57889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028428 149 RSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 149 ~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
+|..++++|+|++|..+++.+++.+|+|..+......+.+++.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888888776643
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.67 E-value=3.3e-07 Score=63.88 Aligned_cols=97 Identities=7% Similarity=-0.080 Sum_probs=78.6
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHHHHHHhhhCCC
Q 028428 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~ 141 (209)
.|..+...+.++.|+.+|.+|.... + ..+++++|.+|.. .+++++|+.++.++.+. .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~---------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g 91 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN--S---------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N 91 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC--C---------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence 6666777778888999999998751 1 3578999999988 88999999999999877 5
Q ss_pred chHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028428 142 NVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 142 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
++.+.+++|.+|.. .+++++|+.+|+++.+.. ++.+...+
T Consensus 92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l 135 (138)
T 1klx_A 92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGIL 135 (138)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 78899999999999 899999999999998873 44444433
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.62 E-value=2.2e-07 Score=78.35 Aligned_cols=108 Identities=8% Similarity=-0.060 Sum_probs=89.9
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-SFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
..+..+.+.|..+...|+|++|+.+|.+++.+..... ..+ +..+..++|+|.+|..+|+|++|+..+.+|+
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H--------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN--------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4567788899999999999999999999998865421 111 3457789999999999999999999999999
Q ss_pred hh-----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028428 137 EL-----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 137 ~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
.+ .|++ .+..-.++.++..++.+++|...|.++.+-.
T Consensus 421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 5666 4556789999999999999999999987644
No 197
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.61 E-value=4.1e-07 Score=76.16 Aligned_cols=78 Identities=17% Similarity=0.031 Sum_probs=67.8
Q ss_pred HHHHhHHHHHHHh----hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCC---CH
Q 028428 109 LSCYLNNAACKLK----LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPN---NR 177 (209)
Q Consensus 109 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~---~~ 177 (209)
..+++++|.+|.. .+++++|+..+.++++.+ ++.+++++|.+|.. .+++++|..+|+++++..|+ ++
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 440 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE 440 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH
Confidence 4578999999998 899999999999998864 68899999999998 89999999999999999854 77
Q ss_pred HHHHHHHHHHH
Q 028428 178 VVKLVYMELKD 188 (209)
Q Consensus 178 ~~~~~l~~l~~ 188 (209)
.+...+..+..
T Consensus 441 ~a~~~l~~~~~ 451 (490)
T 2xm6_A 441 NRNITEKKLTA 451 (490)
T ss_dssp HHHHHHTTSCH
T ss_pred HHHHHHHhcCH
Confidence 88777777654
No 198
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=98.53 E-value=1.2e-07 Score=69.34 Aligned_cols=60 Identities=30% Similarity=0.299 Sum_probs=42.9
Q ss_pred CCCCCccEEEEEeCccc-ccccCC--cCCCCCCceEEEEEEEcccccCCC---CCCCCHHHHHHHH
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEV--SELVSADSVLHYEVTLIDFTKEKP---FWKMDTHEKIEAC 60 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~--~~~ip~~~~l~~~~~l~~~~~~~~---~~~~~~~~~~~~a 60 (209)
..|++||+..|.|.+++ ||..|. .+.||+|+++.|+|+|+.+....+ .|.|+.++++..|
T Consensus 114 ~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A 179 (180)
T 2f4e_A 114 ASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA 179 (180)
T ss_dssp TTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred hCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence 36999999999999999 999986 568999999999999999988776 8899888887655
No 199
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.44 E-value=7.8e-06 Score=68.37 Aligned_cols=108 Identities=9% Similarity=-0.074 Sum_probs=72.6
Q ss_pred HHHHHHHhHHHHH----cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHH
Q 028428 60 CERKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSL 131 (209)
Q Consensus 60 a~~~~~~g~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~ 131 (209)
+......|..++. .+++++|+..|.+++... + ..+++.+|.+|.. .+++++|+..
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--Y---------------TPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 5567778888887 888999999999888641 1 2356667777766 6677777777
Q ss_pred HHHHhhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 132 CTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 132 ~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
+.++.+. .++.+++.+|.+|.. .+++++|+.+|+++... +++.+...+..+..
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF 158 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 7776654 356666667766666 66667777777666553 35556665655554
No 200
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.44 E-value=2.6e-06 Score=70.92 Aligned_cols=107 Identities=10% Similarity=-0.039 Sum_probs=72.6
Q ss_pred HHHHHhHHHHHcC---CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh----cCHHHHHHHHHH
Q 028428 62 RKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL----EDYSETSSLCTK 134 (209)
Q Consensus 62 ~~~~~g~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~ 134 (209)
.+...|..+...| ++.+|+..|.+++...+.. ...++++|.+|... +++++|+..|.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---------------AQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 4567888888888 9999999999998864432 22346667666554 567777777777
Q ss_pred HhhhCCCchHHHHHHHHH-H--hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 135 VLELEPLNVKALYRRSQA-H--LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 135 al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
+. |.++.+++++|.+ + ...+++++|+.+|+++.+. +++.+...+..+..
T Consensus 243 aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 243 IA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred Hc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 66 6667777777766 3 4566777777777766643 35666666666554
No 201
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.43 E-value=2.9e-06 Score=66.18 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-----cCHHHHHHHHHHHhhhCCCc-hHHHHHH
Q 028428 76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----EDYSETSSLCTKVLELEPLN-VKALYRR 149 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~ 149 (209)
...|...+.+|++++|.. +...+|..+|..|... |+.++|..+++++++++|+. ..+++..
T Consensus 179 l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y 245 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 466777788888876652 2356899999999996 99999999999999999975 9999999
Q ss_pred HHHHhcc-CCHHHHHHHHHHHHhcCCC
Q 028428 150 SQAHLKT-SELEKAEADIKRALTIDPN 175 (209)
Q Consensus 150 a~~~~~~-~~~~~A~~~~~~a~~l~p~ 175 (209)
|..+... ++.+.|...+++++..+|.
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999884 9999999999999998776
No 202
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.3e-06 Score=67.67 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC------------------ChHHHHH-H------------
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF------------------TDDEKHQ-A------------ 104 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~------------------~~~~~~~-~------------ 104 (209)
.......+...|..++..|+|++|+..|.+++.+.+..+.. ..+.... .
T Consensus 51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (434)
T 4b4t_Q 51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR 130 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 34445667899999999999999999999999876653210 0011100 0
Q ss_pred HHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028428 105 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
..+...++.++|.+|...|+|.+|+..+..++.. .+....++...|.+|..+|++++|...+++++.+.+.
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 1123557788888888888888888888887754 2334667888888888888888888888888888543
No 203
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.9e-06 Score=70.30 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=75.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+......|..++..|+|.+|+..+.+++.......+ ......++.+++.+|..+|+|++|...+++++...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD---------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC---------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc---------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 345567788888888888888888888887666544 25677889999999999999999999999999876
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
+.........+..+..+|.+..+...+..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5443334455666666665555555555544
No 204
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.40 E-value=1.3e-06 Score=72.23 Aligned_cols=106 Identities=13% Similarity=0.071 Sum_probs=72.4
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|+.++..|.|++|+.+|.++ + .|..+|.|+.++|+|++|++.+.++. +|.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------~----------------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~ 178 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-------S----------------NFGRLASTLVHLGEYQAAVDGARKAN--STR 178 (449)
T ss_dssp -------------CTTTHHHHHHHT-------T----------------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-------h----------------hHHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence 6778888888888888888888865 1 27888888888888888888888883 221
Q ss_pred ---------------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028428 142 ---------------------------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 142 ---------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
+++-...+..+|.+.|.+++|+..++.++.+++.+..+...+..+..+-+.
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p 256 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 256 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH
Confidence 112233345789999999999999999999999999999999888765543
No 205
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.38 E-value=3.9e-06 Score=69.81 Aligned_cols=101 Identities=14% Similarity=0.032 Sum_probs=62.6
Q ss_pred HHHhHHHHHc----CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHH-H--HhhcCHHHHHHHHHHHh
Q 028428 64 KHDGNLLFRA----GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-K--LKLEDYSETSSLCTKVL 136 (209)
Q Consensus 64 ~~~g~~~~~~----~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al 136 (209)
...|..+... +++++|+..|.++. +.++ .+++++|.+ + ...+++++|+..+.+++
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~---------------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYP---------------ASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST---------------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH---------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4455555443 57777887777776 3333 256666666 3 35666667777776666
Q ss_pred hhCCCchHHHHHHHHHHhccC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 137 ELEPLNVKALYRRSQAHLKTS-----ELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
+.+ ++.+++++|.+|. .| ++++|+.+|+++. |+++.+...+..+..
T Consensus 279 ~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 279 AAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred HCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 443 5666666666666 44 6666666666666 666666666666554
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.38 E-value=6e-06 Score=57.36 Aligned_cols=93 Identities=14% Similarity=-0.017 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028428 74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH 153 (209)
Q Consensus 74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 153 (209)
+++++|+..|.++.+.. ++. +. +|.+|...+.+++|+.++.++.+. .++.+++++|.+|
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~---------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMF---------------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTT---------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHh---------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 57899999999999863 222 34 999999999999999999999987 6789999999999
Q ss_pred hc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028428 154 LK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 154 ~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
.. .+++++|+.+|+++.+. .++.+...+..+...
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 99 89999999999999986 678888889888876
No 207
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.38 E-value=4.3e-06 Score=77.50 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=91.4
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC-
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP- 140 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p- 140 (209)
.+...|+.++..|+|+.|+.+|.+|- .|..+|.|+.++|++++|++.+.++....+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence 56679999999999999999999862 289999999999999999999999855443
Q ss_pred ------------------------CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028428 141 ------------------------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 141 ------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
.+++-+..++..|...|.|++|+..++.++.++|.+......+..+..+-+.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 1344566778889999999999999999999999999999888887765433
No 208
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.35 E-value=2.2e-05 Score=55.94 Aligned_cols=118 Identities=9% Similarity=0.037 Sum_probs=92.5
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-TDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
.+++....++..|.|+.|+-.+..++.+...++.. + ......++..+|..++..++|..|...|.++|++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999987665542 2 244667889999999999999999999999986521
Q ss_pred ---C----------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 141 ---L----------------------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 141 ---~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
. ..+..|++|.||.+++++.+|+..++.+.. .-..+.+.-.|++++
T Consensus 95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1 126789999999999999999998865422 123566766666654
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.34 E-value=1.2e-05 Score=64.82 Aligned_cols=115 Identities=11% Similarity=-0.028 Sum_probs=85.7
Q ss_pred HHHHHhHHHHHcCC---HHHHHHHHHHHHHHHhhcCCC-----------------ChHHHHHH------------HHHHH
Q 028428 62 RKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSF-----------------TDDEKHQA------------NGLRL 109 (209)
Q Consensus 62 ~~~~~g~~~~~~~~---~~~A~~~y~~al~~~~~~~~~-----------------~~~~~~~~------------~~~~~ 109 (209)
.+.-+|..++..+. +.+|+.+|.+|+++.|..... .......+ .+...
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a 277 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS 277 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence 35556666666544 588999999999997763210 10111111 11223
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028428 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
.+|..++..++..|++++|+..+++++.++|+ +.++..+|.++...|++++|+..|.+|+.++|..+
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 34556777788899999999999999999975 67889999999999999999999999999999865
No 210
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.31 E-value=1.2e-05 Score=55.05 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=71.2
Q ss_pred HHHHhHHHHHHHhhcC---HHHHHHHHHHHhhhCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLED---YSETSSLCTKVLELEPL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 184 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 184 (209)
...-++.|++..+-.. ...++..++..+..+|. ..+.+|.+|..++++|+|+.|..+.+.+++.+|+|..+.....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3466777877776554 45789999999988884 5889999999999999999999999999999999999988888
Q ss_pred HHHHHHHH
Q 028428 185 ELKDKQRE 192 (209)
Q Consensus 185 ~l~~~~~~ 192 (209)
.|.+++.+
T Consensus 120 ~Ie~ki~k 127 (134)
T 3o48_A 120 MVEDKIQK 127 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87776654
No 211
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.31 E-value=1.8e-05 Score=54.86 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=70.0
Q ss_pred HHHHhHHHHHHHhhcC---HHHHHHHHHHHhhhCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLED---YSETSSLCTKVLELEP-LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 184 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 184 (209)
....++.|+++.+-.. ..+++..++..+.-+| ...+.+|.+|..++++|+|++|..+.+.+++.+|+|..+.....
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3456777788776554 4578999999998888 46889999999999999999999999999999999999988877
Q ss_pred HHHHHHH
Q 028428 185 ELKDKQR 191 (209)
Q Consensus 185 ~l~~~~~ 191 (209)
.+.+++.
T Consensus 119 ~Ie~~i~ 125 (144)
T 1y8m_A 119 MVEDKIQ 125 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 212
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=98.30 E-value=2.6e-06 Score=61.39 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccccCCCCCCCCHHHHHH
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIE 58 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 58 (209)
..|++||..+|.|.+++ ||+.|.++.||||+++.|+|+|+.+.+. .+..+.++...
T Consensus 99 ~gMk~Ge~~~~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~ 155 (167)
T 1jvw_A 99 QLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDG--GKGRTAEEVDE 155 (167)
T ss_dssp TTCCTTCEEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHH
T ss_pred cCCCCCCEEEEEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHH
Confidence 36999999999999999 9999988899999999999999999753 34455555443
No 213
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.25 E-value=6.1e-06 Score=65.28 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=79.4
Q ss_pred HHHhHHHHHcC--CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh---
Q 028428 64 KHDGNLLFRAG--KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL--- 138 (209)
Q Consensus 64 ~~~g~~~~~~~--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--- 138 (209)
...|...+..| ++.+|...|.++....|+... ..++.| |++.+|+|++|...++.++..
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~-------------~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKT-------------QLGLLN---LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH-------------HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc-------------HHHHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence 34454455445 999999999998775543111 123344 899999999999999988876
Q ss_pred -------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028428 139 -------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 139 -------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
+|+++.++.+++.+...+|+ +|..++.++.+++|+++-+..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 58999999999999999998 899999999999999988754
No 214
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=98.17 E-value=2.4e-06 Score=58.87 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=40.3
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFT 43 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~ 43 (209)
..|++||..+|.|.+++ ||..|.++.|||+++|.|+|+|+.+.
T Consensus 83 ~gm~~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~ 126 (128)
T 3o5q_A 83 ATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126 (128)
T ss_dssp TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred hcCCCCCEEEEEEChHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence 36999999999999999 99999888999999999999999874
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.17 E-value=6.6e-06 Score=53.34 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=58.8
Q ss_pred HHHHHHHhHHHHHcCC---HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 60 CERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
+..+...|..++..++ .++|...+.+|+.++|.+. .++..+|..++..|+|++|+..+++++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~---------------rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE---------------AALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456678888876555 7999999999999988765 478999999999999999999999999
Q ss_pred hhCCCc
Q 028428 137 ELEPLN 142 (209)
Q Consensus 137 ~~~p~~ 142 (209)
+.+|..
T Consensus 71 ~~~p~~ 76 (93)
T 3bee_A 71 DSNDPN 76 (93)
T ss_dssp TCCCTT
T ss_pred hhCCCC
Confidence 999984
No 216
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=98.17 E-value=2.5e-06 Score=58.00 Aligned_cols=42 Identities=29% Similarity=0.502 Sum_probs=38.4
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcC-CCCCCceEEEEEEEccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSE-LVSADSVLHYEVTLIDF 42 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~-~ip~~~~l~~~~~l~~~ 42 (209)
..|++||..+|.|.+++ ||+.|.+. .|||++++.|+|+|+.+
T Consensus 75 ~gm~~Ge~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 75 LTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp TTCCTTCEEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred hCCCCCCEEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence 36999999999999999 99999754 79999999999999876
No 217
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=98.16 E-value=2.9e-06 Score=58.54 Aligned_cols=44 Identities=30% Similarity=0.536 Sum_probs=40.4
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~ 44 (209)
..|++||+.+|.|.+++ ||+.+.++.||||+++.|+|+|+.+..
T Consensus 83 ~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~ 127 (129)
T 2vn1_A 83 SSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE 127 (129)
T ss_dssp TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred hCCCCCCEEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence 36999999999999999 999998888999999999999998853
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=1.1e-05 Score=56.89 Aligned_cols=77 Identities=14% Similarity=0.052 Sum_probs=64.8
Q ss_pred HHHHHHHhHHHHHcC---CHHHHHHHHHHHHHHH-hhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 60 CERKKHDGNLLFRAG---KYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 60 a~~~~~~g~~~~~~~---~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
....++.|..+.+++ +.++++..+...++.. |. ....+++++|..++++|+|+.|+.+++.+
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 456678899999988 7779999999999864 31 23568999999999999999999999999
Q ss_pred hhhCCCchHHHHHHH
Q 028428 136 LELEPLNVKALYRRS 150 (209)
Q Consensus 136 l~~~p~~~~~~~~~a 150 (209)
++++|+|..+...+.
T Consensus 98 L~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 98 LQTEPQNNQAKELER 112 (152)
T ss_dssp HHHCTTCHHHHHHHH
T ss_pred HhcCCCCHHHHHHHH
Confidence 999999988765544
No 219
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=98.15 E-value=3.2e-06 Score=56.28 Aligned_cols=42 Identities=21% Similarity=0.432 Sum_probs=38.8
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF 42 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~ 42 (209)
..|++||+.+|.|.+++ ||+.+.+..||+++++.|+++|+.+
T Consensus 64 ~gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v 106 (107)
T 2ppn_A 64 AQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106 (107)
T ss_dssp TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred hCCCCCCEEEEEECHHHccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence 36999999999999999 9999987889999999999999875
No 220
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=98.12 E-value=4.3e-06 Score=55.18 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=40.5
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~ 44 (209)
..|++||+.+|.|.+++ ||+.+....||+++++.|+|+|+.+..
T Consensus 54 ~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~~ 98 (102)
T 2pbc_A 54 LGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIER 98 (102)
T ss_dssp TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEGG
T ss_pred hCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEecc
Confidence 36999999999999999 999998778999999999999998864
No 221
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=98.12 E-value=3.3e-06 Score=57.33 Aligned_cols=42 Identities=29% Similarity=0.302 Sum_probs=39.2
Q ss_pred CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccc
Q 028428 2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFT 43 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~ 43 (209)
.|++||+.+|.|.+++ ||+.+.++.||+++++.|+|+|+.+.
T Consensus 75 gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 75 LMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117 (118)
T ss_dssp GSCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence 5999999999999999 99999888899999999999998764
No 222
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.11 E-value=4e-06 Score=58.31 Aligned_cols=49 Identities=24% Similarity=0.231 Sum_probs=43.2
Q ss_pred CCCCccEEEEEeCccc-ccccC-CcCCCCCCceEEEEEEEcccccCCCCCC
Q 028428 2 TMKKEEQATVTISAEY-LCSHE-VSELVSADSVLHYEVTLIDFTKEKPFWK 50 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~-~~~~ip~~~~l~~~~~l~~~~~~~~~~~ 50 (209)
.|++||+.+|.|.+++ ||+.+ .+..||||+++.|+|+|+.+....+...
T Consensus 79 gm~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~~e~ 129 (135)
T 2d9f_A 79 LMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEM 129 (135)
T ss_dssp GSCTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCSSSS
T ss_pred CCCCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCchhh
Confidence 5999999999999999 99998 7788999999999999999986544433
No 223
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=98.09 E-value=4.2e-06 Score=56.32 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=38.4
Q ss_pred CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028428 2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF 42 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~ 42 (209)
.|++||+.+|.|.+++ ||+.+.+..||+|+++.|+++|+.+
T Consensus 71 gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~i 112 (113)
T 1yat_A 71 KLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112 (113)
T ss_dssp GCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred CCCCCCEEEEEECHHHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence 5999999999999999 9999987889999999999999875
No 224
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.08 E-value=5e-05 Score=60.02 Aligned_cols=122 Identities=11% Similarity=-0.045 Sum_probs=87.4
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL- 141 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~- 141 (209)
..-.|..+...|++++|+..+.++|...+... ...++...+.+++++|+.+.|.+.+.+..+.+|+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~-------------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEG-------------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC-------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 34788889999999999999999977543111 3557888999999999999999999999889883
Q ss_pred ---chHHHHHHHHH--HhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028428 142 ---NVKALYRRSQA--HLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 198 (209)
Q Consensus 142 ---~~~~~~~~a~~--~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 198 (209)
.......++.+ ....| ++.+|...|+++.+..|+.......+. +...++.+.+.++
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence 23444555544 55556 899999999998887776223222222 5555555555544
No 225
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=98.04 E-value=6.1e-06 Score=56.54 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=39.2
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~ 44 (209)
..|++||..+|.|.+++ ||+.+.. .|||++++.|+|+|+.+.+
T Consensus 80 ~gm~~Ge~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~ 123 (125)
T 4dip_A 80 KGMCVGEKRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN 123 (125)
T ss_dssp TTCCTTCEEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred hCCCCCCEEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence 36999999999999999 9999955 8999999999999998753
No 226
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.01 E-value=6.8e-05 Score=69.72 Aligned_cols=107 Identities=11% Similarity=-0.025 Sum_probs=80.7
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC--hHHHHHHH-----HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT--DDEKHQAN-----GLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
.+-|..+...|.|++|...|.++-.........- -..+++.. -....+|+++|.++...|++++|+..|.++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 3458999999999999999988742211100000 00111111 123558999999999999999999999776
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028428 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
+++.+|++.|.++.++|+|++|+.+|..+.+..++
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 78999999999999999999999999999988854
No 227
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=98.00 E-value=8.1e-06 Score=56.75 Aligned_cols=44 Identities=27% Similarity=0.426 Sum_probs=41.1
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~ 44 (209)
..|++||+.+|.|.+++ ||+.|.++.||+++++.|+++|..+..
T Consensus 78 ~gm~~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~ 122 (135)
T 1r9h_A 78 ATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 122 (135)
T ss_dssp TTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred hcCCCCCEEEEEEChHHcCCCCCCCCCcCcCCcEEEEEEEEEeec
Confidence 36999999999999999 999998889999999999999999864
No 228
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.00 E-value=4.5e-05 Score=63.21 Aligned_cols=80 Identities=13% Similarity=-0.022 Sum_probs=65.4
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
..+..+.+.|..+...|+|++|+.+|.+++.+.... +..+ +..+..++|+|.+|..+|+|++|+..+.+|+
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H--------p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS--------LNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 346668889999999999999999999999886542 2221 3457789999999999999999999999999
Q ss_pred hh-----CCCchHH
Q 028428 137 EL-----EPLNVKA 145 (209)
Q Consensus 137 ~~-----~p~~~~~ 145 (209)
++ .|+++..
T Consensus 410 ~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 410 AIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHTCTTCHHH
T ss_pred HHHHHHcCCCChHH
Confidence 75 6777643
No 229
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.96 E-value=4e-05 Score=63.45 Aligned_cols=89 Identities=4% Similarity=-0.096 Sum_probs=69.5
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
..+..+.+.|..+...|+|++|+.+|.+++.+.... +..+ +..+..++|+|.+|..+|++++|+..+.+|+
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H--------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH--------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC--------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 356677888999999999999999999999886542 2222 4457789999999999999999999999999
Q ss_pred hh-----CCCchH---HHHHHHHHHh
Q 028428 137 EL-----EPLNVK---ALYRRSQAHL 154 (209)
Q Consensus 137 ~~-----~p~~~~---~~~~~a~~~~ 154 (209)
++ .|+++. ++.+++.+..
T Consensus 399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 399 DIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 65 566643 3455555554
No 230
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.85 E-value=8.5e-06 Score=67.41 Aligned_cols=117 Identities=13% Similarity=-0.015 Sum_probs=45.3
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC--------hHHHHH----HHHHHHHHHhHHHHHHHhhcCHHHHH
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT--------DDEKHQ----ANGLRLSCYLNNAACKLKLEDYSETS 129 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~ 129 (209)
.+...|..+...|+|++|+.++..+.+..++....+ ...+.. ........|.++|.+++..|.|++|+
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ----------------------------------------------CHHHHTTTTTCC----------------CTTTHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 455666667777888888888887776432211110 001111 11223348999999999999999999
Q ss_pred HHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
..|..+ ..|.++|.|+.++|+++.|+..++++ +++..++....+--.++
T Consensus 143 ~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 143 LLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK 191 (449)
T ss_dssp HHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcC
Confidence 999977 46899999999999999999999999 35666655444433333
No 231
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=97.84 E-value=1.1e-05 Score=55.58 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=37.2
Q ss_pred CCCCccEEEEEeCccc-ccccCCc-----CCCCCCceEEEEEEEccc
Q 028428 2 TMKKEEQATVTISAEY-LCSHEVS-----ELVSADSVLHYEVTLIDF 42 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~~~-----~~ip~~~~l~~~~~l~~~ 42 (209)
.|++||+.+|.|.+++ ||+.+.. ..||+|+++.|+|+|+.+
T Consensus 82 ~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 82 PMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp CCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred ccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 5999999999999999 9998853 579999999999999865
No 232
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=97.81 E-value=2.1e-05 Score=63.56 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=39.9
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcC-----CCCCCceEEEEEEEccccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSE-----LVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~-----~ip~~~~l~~~~~l~~~~~ 44 (209)
.+|++||.+.++|.|+| ||+.|.++ .|||++.|.|+++|+++..
T Consensus 187 ~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~ 236 (356)
T 3jxv_A 187 KTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKT 236 (356)
T ss_dssp TTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEEC
T ss_pred hhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEec
Confidence 48999999999999999 99998654 6999999999999999864
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.73 E-value=0.0014 Score=53.37 Aligned_cols=114 Identities=12% Similarity=-0.024 Sum_probs=96.2
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC------CC-hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS------FT-DDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 130 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 130 (209)
.....+...|......|+...|...+.+|+.+.....- .+ ......+......+...++..+...|++.+|+.
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455667777778889999999999999988543211 11 244677888888999999999999999999999
Q ss_pred HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 131 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
.+..++..+|-+..++..+-.+++..|+..+|+..|+++..
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 234
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.70 E-value=0.0027 Score=55.52 Aligned_cols=141 Identities=9% Similarity=0.016 Sum_probs=94.8
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhh--------cCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEF--------HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
...+......|+++.|...|.+++...+. .+. +++...........+|...+......|..+.|...+.+|
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~-~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT-NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc-chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555678888888888888876431 111 011111122223446777777777889999999999999
Q ss_pred hhh-CCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028428 136 LEL-EPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 136 l~~-~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 206 (209)
++. .+.....|...|..-...+ +.+.|...|+.+++..|+++..+..+......+++.. .-+..|.+.+.
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~-~AR~lferal~ 532 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES-QVKSLFESSID 532 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHTT
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH-HHHHHHHHHHH
Confidence 987 5555777777777766665 4899999999999999999988877776655554433 33566666544
No 235
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=97.57 E-value=8.2e-05 Score=58.05 Aligned_cols=44 Identities=30% Similarity=0.422 Sum_probs=41.0
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~ 44 (209)
..|++||++.|+|.+++ ||..|.++.||+++++.|+|+|..+..
T Consensus 115 ~gm~~Ge~~~v~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~ 159 (280)
T 1q1c_A 115 ATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 159 (280)
T ss_dssp TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred hcCCCCCEEEEEECcHHhCCCcCccCCCCCCCcEEEEEEeeeecc
Confidence 36999999999999999 999998889999999999999998864
No 236
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.48 E-value=0.0015 Score=57.08 Aligned_cols=129 Identities=9% Similarity=0.043 Sum_probs=95.6
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhhCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEP 140 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p 140 (209)
.+...+....+.|..+.|...|.+|+...+.... .+|...|..-...+ +++.|...|+.+++..|
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--------------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP--------------DIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT--------------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 4555556666778899999999999987443222 35666676666665 59999999999999999
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
+++..+...+......|+.+.|...|++++...|+ ...++..+.......+.... -.+.++++.
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~-~~~v~~R~~ 568 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS-VRTLEKRFF 568 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH-HHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Confidence 99998888888888999999999999999999884 45666666666555443332 233444443
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.40 E-value=0.00032 Score=54.69 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHhhhCCC--chHHHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Q 028428 124 DYSETSSLCTKVLELEPL--NVKALYRRSQAHLKT-----SELEKAEADIKRALTIDPNN-RVVKLVYMELK 187 (209)
Q Consensus 124 ~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~l~ 187 (209)
....|...+++++++||+ +..+|..+|..|... |+.++|...|+++++++|+. ..+...+..-.
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l 249 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 457899999999999999 566999999999995 99999999999999999975 77777777654
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.39 E-value=0.002 Score=45.86 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=64.4
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChH--------HHH--HHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD--------EKH--QANGLRLSCYLNNAACKLKLEDYSET 128 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A 128 (209)
.+..+.-.|+.+|..|+|..|...|.+||.....-+..... -.. .....-..+.+.+|.||.+++++.+|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 35667889999999999999999999998876532111000 000 00001235778899999999999999
Q ss_pred HHHHHHHhhhCCCchHHHHHHHHHHh
Q 028428 129 SSLCTKVLELEPLNVKALYRRSQAHL 154 (209)
Q Consensus 129 ~~~~~~al~~~p~~~~~~~~~a~~~~ 154 (209)
+..++.+ ......++....+|+.|.
T Consensus 142 i~~Le~I-p~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 142 IAILDGI-PSRQRTPKINMLLANLYK 166 (167)
T ss_dssp HHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred HHHHhcC-CchhcCHHHHHHHHHHhc
Confidence 9987554 333446777788887663
No 239
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.30 E-value=0.001 Score=53.73 Aligned_cols=67 Identities=9% Similarity=-0.069 Sum_probs=57.1
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|..++..|+++.|+..+++|+.+.+. ...|..+|.++...|++++|+..+.+|+.++|.
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----------------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS----------------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3445666777789999999999999999643 346789999999999999999999999999998
Q ss_pred chH
Q 028428 142 NVK 144 (209)
Q Consensus 142 ~~~ 144 (209)
...
T Consensus 343 ~~t 345 (372)
T 3ly7_A 343 ANT 345 (372)
T ss_dssp HHH
T ss_pred cCh
Confidence 753
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.27 E-value=0.0012 Score=44.94 Aligned_cols=77 Identities=14% Similarity=0.030 Sum_probs=56.6
Q ss_pred HHHHHHhHHHHHcCCHHH---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 61 ERKKHDGNLLFRAGKYWR---ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~---A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
...++.|..+.++..... ++..+...+.-. . +...-.+++.+|..++++|+|..|+.+++.+|+
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~---~----------p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---S----------KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---C----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---C----------cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344566677777666555 666666655531 0 013456789999999999999999999999999
Q ss_pred hCCCchHHHHHHH
Q 028428 138 LEPLNVKALYRRS 150 (209)
Q Consensus 138 ~~p~~~~~~~~~a 150 (209)
.+|+|..+.-.+.
T Consensus 103 ~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 103 TEPQNNQAKELER 115 (126)
T ss_dssp HCTTCHHHHHHHH
T ss_pred hCCCCHHHHHHHH
Confidence 9999988765544
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.13 E-value=0.0061 Score=41.67 Aligned_cols=77 Identities=18% Similarity=0.092 Sum_probs=58.0
Q ss_pred HHHHHHhHHHHHcCCH---HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 61 ERKKHDGNLLFRAGKY---WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
...++.|..+.++... .+++..+...+...+.. .-..++.+|..+.++|+|..|..+++.+++
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--------------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445667777776544 46777777777643321 345789999999999999999999999999
Q ss_pred hCCCchHHHHHHHH
Q 028428 138 LEPLNVKALYRRSQ 151 (209)
Q Consensus 138 ~~p~~~~~~~~~a~ 151 (209)
.+|+|..+.-.+..
T Consensus 107 ~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 107 HERNNKQVGALKSM 120 (134)
T ss_dssp TCTTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHH
Confidence 99999887655443
No 242
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=97.08 E-value=8.4e-05 Score=60.03 Aligned_cols=44 Identities=32% Similarity=0.464 Sum_probs=1.0
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~ 44 (209)
..|++||...|+|.+++ ||+.|.++.||||+++.|+++|+.+..
T Consensus 75 ~gm~~Ge~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~ 119 (356)
T 3jxv_A 75 KTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTS 119 (356)
T ss_dssp -------------------------------------------CC
T ss_pred hcCCCCCEEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeec
Confidence 36999999999999999 999998889999999999999998863
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.07 E-value=0.021 Score=40.02 Aligned_cols=111 Identities=7% Similarity=-0.100 Sum_probs=84.7
Q ss_pred HHHHHhHHHHHcCCH------HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 62 RKKHDGNLLFRAGKY------WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
.+.......-+.|+. +.-+..|.+|+...|..... .+ .--+.+|.+.|.. ..+++.+.|.+.|..+
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~---~w----rrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYG---QN----ESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGT---TC----HHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccc---cH----HHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 444444555555777 88889999999988764311 11 2234455555544 5679999999999999
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028428 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
+.++....+.|...|.--.++|+...|...+.+++.+.|...+..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 998888899999999999999999999999999999999765543
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.05 E-value=0.0069 Score=41.95 Aligned_cols=77 Identities=18% Similarity=0.091 Sum_probs=57.8
Q ss_pred HHHHHHHhHHHHHcCCH---HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 60 CERKKHDGNLLFRAGKY---WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
....++.|..+.++... .+++..+...+.-.|.. .-..++.+|..++++|+|..|..+++.+|
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--------------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34456677777776654 46777777776632221 34578999999999999999999999999
Q ss_pred hhCCCchHHHHHHH
Q 028428 137 ELEPLNVKALYRRS 150 (209)
Q Consensus 137 ~~~p~~~~~~~~~a 150 (209)
+.+|+|..+.-.+.
T Consensus 105 ~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 105 EHERNNKQVGALKS 118 (144)
T ss_dssp HTCCCCHHHHHHHH
T ss_pred hcCCCcHHHHHHHH
Confidence 99999987755443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.014 Score=51.43 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=54.8
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
++.--+...+..|+|+-|+..+.++...-|.....|+.++.||..+|+|+.|+-.++.+..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 4555566677889999999999999999999999999999999999999999999888753
No 246
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.76 E-value=0.059 Score=45.17 Aligned_cols=125 Identities=11% Similarity=0.001 Sum_probs=86.3
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh---------HHHHHH----------------HHHHHHHHhHH
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---------DEKHQA----------------NGLRLSCYLNN 115 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~---------~~~~~~----------------~~~~~~~~~~~ 115 (209)
..+...+.-....|+.+.|...|.+|+.. |.....+- +....+ ......+|...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 34666777777899999999999999998 65432110 000000 01122456666
Q ss_pred HHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028428 116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 116 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
+......+..+.|...+.++ ...+.....|...|..-...+ +.+.|...|+.+++..|+++.....+....
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 66666788999999999999 444445667777776666666 699999999999999999887655544443
No 247
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=96.68 E-value=0.13 Score=40.47 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=81.0
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--cC-----HHHH--HHHH
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--ED-----YSET--SSLC 132 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~-----~~~A--~~~~ 132 (209)
.....|..++..|++.+|+..|...|...+-......++.++..++...+...+-.+-+.+ +. .... +..|
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY 195 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY 195 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3556999999999999999999999998876554455666666666666544333333333 11 1111 1222
Q ss_pred HHHhhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028428 133 TKVLELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 133 ~~al~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
-.-.++.|.+.-.-.+.| ...++.++|..|....++.+++.|..+.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q 245 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ 245 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 233355666655556666 4678999999999999999999997554443
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.67 E-value=0.052 Score=44.23 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=80.3
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC-----
Q 028428 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE----- 139 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----- 139 (209)
..|..++..|+|.+|...+.+....+....+ ......++.....+|..++++.++...++.+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 6899999999999999999999998766332 25678889999999999999999999998886542
Q ss_pred CCc--hHHHHHHHHHHh-ccCCHHHHHHHHHHHHhc
Q 028428 140 PLN--VKALYRRSQAHL-KTSELEKAEADIKRALTI 172 (209)
Q Consensus 140 p~~--~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~l 172 (209)
|+. ......-|..+. ..++|..|..+|-.+++-
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 222 233455688888 899999999999888743
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.43 E-value=0.034 Score=46.73 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=73.3
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
..++..+|.+......+..|..+|.+|+.+.|.+..++..+|.+....|+.-.|+-+|-+++......+.+...+..+-+
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34677888888888999999999999999999999999999999999999999999999999887778888888887766
Q ss_pred HH
Q 028428 189 KQ 190 (209)
Q Consensus 189 ~~ 190 (209)
..
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.097 Score=43.08 Aligned_cols=99 Identities=12% Similarity=-0.044 Sum_probs=79.6
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh---C
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL---E 139 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~ 139 (209)
....|..+++.|+++.|.+.|.++......... .+.++.....+++..++|..+...+.++... .
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 567999999999999999999999887655443 4678888889999999999999999998654 2
Q ss_pred CCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028428 140 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 140 p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
+++ .......|..+...++|..|...|-.++.-.
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 222 2344557888899999999999998876543
No 251
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.89 E-value=0.47 Score=37.30 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=80.1
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--cCH-----HHHHHHHHHH
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--EDY-----SETSSLCTKV 135 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~-----~~A~~~~~~a 135 (209)
....|..++..|++.+|+..|...|...+-......++.++..++...+...+-.+-+.+ +.. +.....++-+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence 457899999999999999999999998876655555666777777666544443333333 221 2322233332
Q ss_pred -----hhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028428 136 -----LELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 136 -----l~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
.++.|.+.-.-.+.| ...++.++|..|....++.+++.|..+
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 355666655556666 467899999999999999999988633
No 252
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.79 E-value=0.21 Score=41.82 Aligned_cols=124 Identities=11% Similarity=-0.036 Sum_probs=87.9
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhhC
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELE 139 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~ 139 (209)
..+...+....+.+..+.|...|.+| . .+. .. ..+|...|..-...+ +++.|...++.++...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~-------------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VG-------------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CC-------------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CC-------------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 34555555555677899999999999 3 232 11 235666666666666 6999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028428 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
|+.+..+...+......|+.+.|...|+++ +.....+..........+... .-+..|.+++
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~-~~r~v~~~~~ 411 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSME-LFRELVDQKM 411 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHH
Confidence 998888777788888999999999999987 345677777776666554332 2233455444
No 253
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.57 E-value=0.089 Score=44.21 Aligned_cols=83 Identities=16% Similarity=0.004 Sum_probs=72.5
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
-....+...|+.......+..|..+|.+|+.+.|..+. .|+.+|.+....|+.-+|+-+|.+++.
T Consensus 150 ~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~---------------~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---------------PYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc---------------hHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 34456788999999999999999999999999998765 799999999999999999999999998
Q ss_pred hCCCchHHHHHHHHHHhc
Q 028428 138 LEPLNVKALYRRSQAHLK 155 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~ 155 (209)
...+.+.+.-++...+.+
T Consensus 215 ~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 215 VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp SSBCCHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHH
Confidence 887788888877777654
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.56 E-value=0.25 Score=35.47 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=70.3
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh--hhC---
Q 028428 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL--ELE--- 139 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~--- 139 (209)
-.+..+|-.|+|..|+.+.... .+ ....+-.+.||.++++|..|+..++.++ .++
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~l----NT----------------~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~ 97 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHKL----NT----------------CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDP 97 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC----CB----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCC
T ss_pred hhhhhhhhcchHhHHHHHHHhc----ch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 3566777888888887665421 11 2235667789999999999999999999 232
Q ss_pred ------------CCchHH-HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028428 140 ------------PLNVKA-LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 140 ------------p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
|.+-.. +..+|..+..+|+-++|+.++......+|--+.+.
T Consensus 98 ~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 98 DVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp CCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 333333 44579999999999999999999888877554444
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.53 E-value=0.16 Score=39.07 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=61.5
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028428 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
..++.|..++|+..+...++-+|.+.+....+...+.-.|+|+.|..-++.+.+++|........+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999986665544433
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.048 Score=48.13 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=52.0
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
..+..++.-+..+|+|+.|+..-.+|+...|... ..|..++.||..+|+|+.|+-.++-+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF---------------~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSF---------------ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh---------------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3566678888899999999999999999977653 47999999999999999999877766
No 257
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.07 E-value=0.8 Score=38.38 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=76.9
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC-CC
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PL 141 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~ 141 (209)
+...-..+.+.|++++|...|.+....- -.++ ...|+.+-..|.+.|++++|...+....... ..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd-------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPR-------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc-------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 3344456778899999999998876531 1122 4468888888999999999999998877653 33
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHH
Q 028428 142 NVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRV 178 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--~p~~~~ 178 (209)
+...|..+-.++.+.|+.++|...|++..+. .|+...
T Consensus 174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 174 EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 5677888889999999999999999987654 565433
No 258
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.58 E-value=1 Score=37.74 Aligned_cols=106 Identities=8% Similarity=0.021 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC-CCchHHHHHHHHHH
Q 028428 75 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PLNVKALYRRSQAH 153 (209)
Q Consensus 75 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~ 153 (209)
..+.|...|.+....- -.|+ ...|+.+-..|.+.|++++|...+......+ ..+...|..+-.+|
T Consensus 85 ~l~~A~~lf~~M~~~G-~~Pd-------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~ 150 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDK-VVPN-------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF 150 (501)
T ss_dssp HHHHHHHHHHHHHHTT-CCCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHH
Confidence 3566777776654421 1122 4578999999999999999999999887653 34677788889999
Q ss_pred hccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Q 028428 154 LKTSELEKAEADIKRALTI--DPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 154 ~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
.+.|++++|...|+...+. .|+ ......+-....+.....+
T Consensus 151 ~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADK 193 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHH
Confidence 9999999999999998765 454 4444444444444444433
No 259
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=94.32 E-value=0.18 Score=31.44 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
..+.|..+..+|...-+.|+|.+|+.+|..||+.+..
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999999999999999997654
No 260
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=93.66 E-value=0.19 Score=31.37 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028428 53 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 53 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
.....+.+..+..+|...-+.|+|++|+.+|..|++.+..
T Consensus 12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999999999997654
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.59 E-value=2.6 Score=34.69 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=77.7
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh-
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE- 137 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~- 137 (209)
.+......+..+...|++.+|.........-.-...+ ....+.++......++..++|..|...+.++..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~---------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME---------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3555677899999999999999999887543211111 245677788888999999999999999988742
Q ss_pred --hCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 138 --LEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 138 --~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
-.+.. ...+...|..+...++|.+|..+|..+...
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 12222 234566788899999999999999888754
No 262
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.49 E-value=1 Score=29.74 Aligned_cols=75 Identities=12% Similarity=-0.012 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc-------CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHH
Q 028428 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-------HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 126 (209)
......+-.+.+.|...-..|+-+.|+.+|.++|..+... +..+.+.|+....+....-.|++.+..+++..+
T Consensus 16 k~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le 95 (116)
T 2dl1_A 16 REAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILE 95 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888999999999999999877642 224568899999999999999999988777665
Q ss_pred HH
Q 028428 127 ET 128 (209)
Q Consensus 127 ~A 128 (209)
..
T Consensus 96 ~~ 97 (116)
T 2dl1_A 96 KG 97 (116)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 263
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=93.44 E-value=0.056 Score=35.89 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=28.8
Q ss_pred CCCCccEEEEEeC-cccccccCCcCCCCCCceEEEEEEEccc
Q 028428 2 TMKKEEQATVTIS-AEYLCSHEVSELVSADSVLHYEVTLIDF 42 (209)
Q Consensus 2 ~m~~ge~~~~~~~-~~~~~~~~~~~~ip~~~~l~~~~~l~~~ 42 (209)
.|++||...|.|. |+-||..+ ++++++.|+|+|+.+
T Consensus 76 Gmk~Ge~~~v~i~fP~~Yg~~~-----~~g~~l~F~V~l~~V 112 (113)
T 1hxv_A 76 AMKVNQKKTLALTFPSDYHVKE-----LQSKPVTFEVVLKAI 112 (113)
T ss_dssp TSCSSEEEEECCCCCTTSSSSG-----GGSCCCEEEEEECCB
T ss_pred CCCCCCEEEEEEeCchhhCcCC-----CCCCEEEEEEEEEEE
Confidence 5999999999997 44378755 356899999999875
No 264
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=92.46 E-value=0.075 Score=37.81 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=18.4
Q ss_pred CCCCCccEEEEEeCccc-ccc
Q 028428 1 MTMKKEEQATVTISAEY-LCS 20 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~ 20 (209)
++|++||+++|+|.|++ ||.
T Consensus 77 ~~M~~Ge~~~~~ipp~laYG~ 97 (165)
T 2lkn_A 77 CTMREGEIAQFLCDIKHVVLY 97 (165)
T ss_dssp TTCCTTCEEEEECCHHHHSSH
T ss_pred hcCccCceEEEEECHHHhcCC
Confidence 47999999999999999 993
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.19 E-value=1.2 Score=34.13 Aligned_cols=62 Identities=13% Similarity=0.004 Sum_probs=52.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028428 68 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144 (209)
Q Consensus 68 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 144 (209)
..+++.|..+.|+......|+-.|.+. .+...+-..+.-.|+|+.|...++.+.+++|....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da---------------~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDA---------------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 457889999999999999999876654 35667777788899999999999999999988744
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.94 E-value=2.9 Score=33.94 Aligned_cols=132 Identities=17% Similarity=0.020 Sum_probs=86.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHH-------------------HHHhhcCCCChH---------HHHHHH-HH--H
Q 028428 60 CERKKHDGNLLFRAGKYWRASKKYEKAA-------------------KIIEFHHSFTDD---------EKHQAN-GL--R 108 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al-------------------~~~~~~~~~~~~---------~~~~~~-~~--~ 108 (209)
=....+.|..+.+.|++++-........ ..+...+...+. +|..-. .. .
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999998877666554443 333332222111 111111 11 2
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHhcC---CCCHHH
Q 028428 109 LSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPL--NVKALYRRSQAHLKTSELEKAEADIKRALTID---PNNRVV 179 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~---p~~~~~ 179 (209)
..+-..+|..|+..|+|.+|+..+.+.++- |.. -...+.....+|..++++.++...+.++.... +.+|.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 224458999999999999999999888764 221 25677888999999999999999999997653 345666
Q ss_pred HHHHHHHHHHHH
Q 028428 180 KLVYMELKDKQR 191 (209)
Q Consensus 180 ~~~l~~l~~~~~ 191 (209)
...+..+.-...
T Consensus 179 ~a~i~~~~Gi~~ 190 (394)
T 3txn_A 179 QGALDLQSGILH 190 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhHHH
Confidence 555555544333
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.07 E-value=0.5 Score=38.78 Aligned_cols=75 Identities=7% Similarity=0.068 Sum_probs=60.2
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Q 028428 111 CYLNNAACKLKLEDYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRVVKLVYME 185 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~ 185 (209)
++..+|..|...|+++.|++.+.++..... .-...++....++...++|..+...+.++..+ ...++.....+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 577899999999999999999999887643 33778899999999999999999999999766 3344555444433
No 268
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.56 E-value=3.5 Score=29.45 Aligned_cols=26 Identities=12% Similarity=-0.087 Sum_probs=16.5
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHH
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKA 86 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~a 86 (209)
..|+..|......|+++-|...|.++
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34666666666666666666666654
No 269
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=90.51 E-value=0.47 Score=29.53 Aligned_cols=37 Identities=14% Similarity=0.005 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
....+..+...|...-..|+|++|+.+|..|++++-.
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4556777888999999999999999999999997654
No 270
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=90.44 E-value=2.2 Score=26.90 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT 97 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~ 97 (209)
+..|..+-.+++.+.+.|.|++||++..+|..++......+
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmklt 52 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLT 52 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 55688888999999999999999999999998887654443
No 271
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=90.15 E-value=0.63 Score=30.97 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028428 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
..+..+..+..+|...-..|+|.+|+.+|..|++++-.
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45667888889999999999999999999999998654
No 272
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.91 E-value=3.7 Score=28.71 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=57.8
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+...+.- ...++.++|...|+.|+.. ...| +.+|...|.--.++|+...|.+.+.+++.++|..
T Consensus 64 WIrYA~~-~ei~D~d~aR~vy~~a~~~---hKkF------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 64 QVRFAEL-KAIQEPDDARDYFQMARAN---CKKF------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHH-HHHHCGGGCHHHHHHHHHH---CTTB------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHH---hHHH------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3344422 4458999999999999996 4444 5788899999999999999999999999999875
Q ss_pred hHHHHHHHHHHhccC
Q 028428 143 VKALYRRSQAHLKTS 157 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~ 157 (209)
.. ++..|..-.+.|
T Consensus 128 ~~-~le~a~~nl~~~ 141 (161)
T 4h7y_A 128 LE-MLEIALRNLNLQ 141 (161)
T ss_dssp HH-HHHHHHHHHHTT
T ss_pred HH-HHHHHHHhhhcC
Confidence 44 344444433333
No 273
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=89.91 E-value=7 Score=35.99 Aligned_cols=98 Identities=8% Similarity=-0.119 Sum_probs=74.9
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHh--hcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIE--FHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
.+...=+.+.+.|+.++|...|...-.+.. -.++ +..|+-+-..|.+.|++++|...+.+-...+
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-------------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-------------LDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-------------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 466666788899999999999976544321 1222 5579999999999999999999998887643
Q ss_pred -CCchHHHHHHHHHHhccCC-HHHHHHHHHHHHhc
Q 028428 140 -PLNVKALYRRSQAHLKTSE-LEKAEADIKRALTI 172 (209)
Q Consensus 140 -p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~l 172 (209)
..+.-.|..+-.++.+.|+ .++|...|++..+.
T Consensus 196 ~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 3466778888889999997 57888888887654
No 274
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=89.84 E-value=0.84 Score=28.98 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
....+..+...|...-..|+|++|+.+|..|++.+-.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3556778889999999999999999999999998765
No 275
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.49 E-value=2.6 Score=29.09 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=35.9
Q ss_pred hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 122 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 122 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
.|+-++--+.+...+.-.+.++..++.+|.||.++|+..+|...+++|-+
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34444433333333445667799999999999999999999999998865
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.30 E-value=1 Score=37.99 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=56.9
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC--Cc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEP--LN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
.+.+++-+-..|+..+.|++|.....++.--.. .+ ...+|..|.++.-.++|.+|..++..|+...|.+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 456778888899999999999999999852211 11 45678899999999999999999999999888653
No 277
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=88.96 E-value=0.9 Score=28.39 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
...+..+..+|...-..|+|++|+.+|..|++.+-.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999999999987654
No 278
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.71 E-value=8 Score=31.76 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=65.1
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHh---cCCCCHH
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLN--VKALYRRSQAHLKTSELEKAEADIKRALT---IDPNNRV 178 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---l~p~~~~ 178 (209)
++.+...+|..|...|++.+|...+..+..- ++.. ...+......+...+++..|...++++.. -.+.++.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 5566788999999999999999999887632 2222 55778889999999999999999999743 2455666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028428 179 VKLVYMELKDKQREYAK 195 (209)
Q Consensus 179 ~~~~l~~l~~~~~~~~~ 195 (209)
....+..+.-++...+.
T Consensus 216 lk~~~~~~~~~~~~~e~ 232 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKR 232 (445)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66666665555544433
No 279
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.48 E-value=3.9 Score=35.60 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=31.7
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
.......|+++.|.+..... .. ...|.++|..+.+.++++.|+..|.++
T Consensus 659 f~~~l~~~~~~~A~~~~~~~-------~~-------------~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE-------SA-------------EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC-------CC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhh-------Cc-------------HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455667777776654211 11 235778888888888888888877775
No 280
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.55 E-value=9.7 Score=30.57 Aligned_cols=83 Identities=8% Similarity=-0.018 Sum_probs=62.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhhhCC----------Cc------------hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 114 NNAACKLKLEDYSETSSLCTKVLELEP----------LN------------VKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 114 ~~a~~~~~~~~~~~A~~~~~~al~~~p----------~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
..|......++.+.|...+..|+.+-. .+ ..+...++.++...|++.+|+..+..++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444456889999999999987631 12 13445578889999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHH
Q 028428 172 IDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 172 l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
.+|-+...+..+..+..+.....+.
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~A 224 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDA 224 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999888887665554443
No 281
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.86 E-value=1.6 Score=40.39 Aligned_cols=105 Identities=9% Similarity=0.068 Sum_probs=72.4
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh--HHHHHH------HHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD--DEKHQA------NGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
+-.|..++..|++++|..+|.+|-.-......... ...... .......|......+.+.+.++.+++....|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66899999999999999999987543222111110 111110 0112345677777888889999999999999
Q ss_pred hhhCCCc-h----HHHHHHHHHHhccCCHHHHHHHHHH
Q 028428 136 LELEPLN-V----KALYRRSQAHLKTSELEKAEADIKR 168 (209)
Q Consensus 136 l~~~p~~-~----~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (209)
++..+.. . ..|.++-..+..+|+|++|...+..
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 9875433 2 2577888899999999999777643
No 282
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=85.62 E-value=4.4 Score=25.76 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028428 52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
+.+.+......-...|..+...|+++.|+.+|.+||...+.
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45555566777789999999999999999999999998776
No 283
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=84.85 E-value=0.61 Score=32.74 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.3
Q ss_pred CCCCCccEEEEEeCccc-ccccCC
Q 028428 1 MTMKKEEQATVTISAEY-LCSHEV 23 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~ 23 (209)
..|++||+.+|.|.+++ ||+.+.
T Consensus 104 ~gMk~Ge~~~v~IP~~~aYG~~g~ 127 (157)
T 2jwx_A 104 PLMDVGETAMVTADSKYCYGPQGS 127 (157)
T ss_dssp TTSCTTCEEEEEECGGGTTTTTCC
T ss_pred cCCCCCCEEEEEECchhcCCcccc
Confidence 36999999999999999 998664
No 284
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=84.84 E-value=5.3 Score=24.99 Aligned_cols=69 Identities=14% Similarity=-0.001 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhHHHHHc---CCHHHHHHHHHHHHHHHhhc----CCCChHHHHHHHHHHHHHHhHHHHHHHhh
Q 028428 54 HEKIEACERKKHDGNLLFRA---GKYWRASKKYEKAAKIIEFH----HSFTDDEKHQANGLRLSCYLNNAACKLKL 122 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~---~~~~~A~~~y~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 122 (209)
..-.+.+-.+.+.|...-.. |+-+.|+.+|.+++.-+..- ....-+.|+....+....-.|+..+-..+
T Consensus 10 k~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL 85 (89)
T 3eab_A 10 RVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888 99999999999998776542 12234667777888777777777665544
No 285
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=83.71 E-value=3.4 Score=24.89 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH 93 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~ 93 (209)
+......-...|..+...|++++|+.+|.+|+...+..
T Consensus 13 ~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 13 VQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 33445556689999999999999999999999987653
No 286
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.52 E-value=3.9 Score=29.22 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=38.9
Q ss_pred HHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028428 119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 119 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
.+..|+++.|.+.+... ++...|-++|.+....|+++-|...|.++-
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 45789999998887665 567789999999999999999999888764
No 287
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=83.02 E-value=4.2 Score=35.35 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHH
Q 028428 62 RKKHDGNLLFRAGKYWRASKKYEKA 86 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~a 86 (209)
.+...|..+.+.++++.|+..|.++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4567777777777777777777754
No 288
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=80.26 E-value=26 Score=32.40 Aligned_cols=71 Identities=8% Similarity=-0.028 Sum_probs=56.5
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhh----hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHH
Q 028428 110 SCYLNNAACKLKLEDYSETSSLCTKVLE----LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRVVK 180 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~ 180 (209)
..|+.+-.+|.+.|+.++|...+..... -...+...|..+-..|.+.|++++|...|++..+. .|+.....
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3578888899999999999999966432 23456788999999999999999999999998764 56544333
No 289
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.68 E-value=13 Score=30.81 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCChHHH-HHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC--------CC--ch
Q 028428 75 KYWRASKKYEKAAKIIEFHHSFTDDEK-HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--------PL--NV 143 (209)
Q Consensus 75 ~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~--~~ 143 (209)
..+.|.....++....-.+.....++. ..-+.-..-+.+++..+|+++++...|...+..+-... |. .+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 456677777777766544333111110 00111122234677789999999998877774432222 11 25
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhc-CCCC
Q 028428 144 KALYRRSQAHLKTSELEKAEADIKRALTI-DPNN 176 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l-~p~~ 176 (209)
..+|.+|+.+...++|.+|...+..|+.. .|.+
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 67889999999999999999999999998 7755
No 290
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=79.34 E-value=1.2 Score=31.20 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.7
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028428 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
.|++||..+|+|.|++ ||+.+
T Consensus 63 gm~~Ge~~~v~Ipp~~aYG~~~ 84 (157)
T 3pr9_A 63 EMDVGEEREVVLPPEKAFGKRD 84 (157)
T ss_dssp HCCTTCEEEEEECGGGTTCCCC
T ss_pred CCCCCCEEEEEECcHHhcCCCC
Confidence 4999999999999999 99987
No 291
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.35 E-value=8.6 Score=23.08 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028428 149 RSQAHLKTSELEKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 149 ~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
+|..+...|++++|...|-+|+.+.|.=.....
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555555555555555554444433
No 292
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=76.68 E-value=2.3 Score=29.73 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.6
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028428 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
.|++||+..|+|.|+. ||+.+
T Consensus 46 Gm~~Ge~~~v~ipp~~aYG~~~ 67 (158)
T 3cgm_A 46 GREEGEAFQAHVPAEKAYGPHD 67 (158)
T ss_dssp TCBTTCEEEEEECGGGTTCCCC
T ss_pred CCCCCCEEEEEECcHHHcCCCC
Confidence 5999999999999999 99976
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=76.20 E-value=15 Score=25.79 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=50.7
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH-hHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY-LNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
..-...|..+|..|+|-+|.+.+.....-.+.. + +++. -+...+. ...|..+...|++..|...+.+++..
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~---~-~er~---~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRG---N-TESK---FLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSS---S-HHHH---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCC---c-hHHH---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344678999999999999999999887643221 0 1221 2233344 55667778899999999999999863
No 294
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=75.74 E-value=3.8 Score=28.37 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=19.6
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028428 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
.|++||...|+|.|+. ||+.+
T Consensus 56 gm~~Ge~~~v~ipp~~aYG~~~ 77 (151)
T 2kr7_A 56 KAQIGEWEEVVIAPEEAYGVYE 77 (151)
T ss_dssp TCCBTCEEEEEECGGGTTCSSC
T ss_pred CCCCCCEEEEEEecHHHcCCCC
Confidence 6999999999999999 99976
No 295
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=73.95 E-value=22 Score=25.54 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=44.8
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028428 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
-.-++.+.+-.|+|..|+-.+. .-+...+.|..+.||.+++++..|+..+++++
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999988866553 33457889999999999999999999999999
No 296
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=72.70 E-value=2.6 Score=29.89 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=19.7
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028428 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
.|++||...|+|.|++ ||+.+
T Consensus 74 gm~~Ge~~~v~Ipp~~AYG~~~ 95 (169)
T 4dt4_A 74 GLKVGDKTTFSLEPDAAFGVPS 95 (169)
T ss_dssp TCCTTCEEEEEECGGGTTCCCC
T ss_pred CCCCCCEEEEEEChHHhcCCCC
Confidence 6999999999999999 99976
No 297
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=71.80 E-value=1.7 Score=30.12 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.7
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028428 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
.|++||..+|+|.|+. ||+.+
T Consensus 64 gm~~Ge~~~v~ipp~~aYG~~~ 85 (151)
T 1ix5_A 64 DMEVGDEKTVKIPAEKAYGNRN 85 (151)
T ss_dssp TCCTTCCCEEEECTTTSSCSCC
T ss_pred CCCCCCEEEEEECcHHHCCCCC
Confidence 5999999999999999 99977
No 298
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=71.45 E-value=15 Score=26.64 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=31.6
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 143 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 143 (209)
.+...+.+|.+++..++|.+|.+++..|+...|...
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 455688999999999999999999999999988654
No 299
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.57 E-value=22 Score=30.59 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=44.5
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
..+..|++..|...+...-.-........|-+|.++..+|+.++|...|..+..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 345679999999998776554445678899999999999999999999988765
No 300
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=69.92 E-value=15 Score=23.15 Aligned_cols=63 Identities=19% Similarity=0.071 Sum_probs=43.1
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
...|..+|..|+|-+|.+.+.....-.+. +++ .-+...+...-|..+...|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~------~~~---~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATG------EER---RLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCH------HHH---HHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCC------chH---HHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 35788999999999999999998875422 111 112333445556666677887 8888888765
No 301
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=69.69 E-value=4.4 Score=33.26 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.1
Q ss_pred CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028428 2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~ 44 (209)
.|++||+..|.+.++. ||..+ .+|.++.|.|++..+..
T Consensus 204 G~k~Ge~~~v~v~~~~~yg~~~-----lag~~~~F~V~v~~v~~ 242 (432)
T 1w26_A 204 GHKAGEEFTIDVTFPEEYHAEN-----LKGKAAKFAINLKKVEE 242 (432)
T ss_dssp SCCSSCEEEEEEECCTTCSCTT-----TSSCEEEEEEECCEECC
T ss_pred CCCCCCEEEEEECCchhhCCCC-----CCCceEEEEEEEEEEec
Confidence 5999999999999998 98754 35688999999988763
No 302
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=69.64 E-value=18 Score=22.70 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 158 ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 158 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+...++.....+++.+|+||.++..++..-....-.+..+....|.|
T Consensus 31 ~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQSntiKa~ 77 (92)
T 2g0u_A 31 DLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAVKSM 77 (92)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555667799999998888887777777777777666654
No 303
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=68.93 E-value=17 Score=22.78 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
.+.++.....|..+|+.+.|.+|...|.++...
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 466888899999999999999999999998865
No 304
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=68.91 E-value=3 Score=31.18 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.8
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028428 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
.|++||...|+|.|++ ||+.+
T Consensus 63 Gm~vGek~~v~Ippe~AYGe~~ 84 (231)
T 3prb_A 63 EMDVGEEREVVLPPEKAFGKRD 84 (231)
T ss_dssp TCCTTCEEEEEECGGGTTCCCC
T ss_pred CCCCCCEEEEEeCcHHhcCCCC
Confidence 5999999999999999 99987
No 305
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=68.14 E-value=18 Score=22.26 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=16.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 146 LYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+...|.-.-..|++++|+..|..+++.
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555556666777766666666543
No 306
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.50 E-value=11 Score=24.88 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHhhhCC
Q 028428 124 DYSETSSLCTKVLELEP 140 (209)
Q Consensus 124 ~~~~A~~~~~~al~~~p 140 (209)
.+++|..+.+++|.+|.
T Consensus 18 ~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 35666666777776654
No 307
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=65.32 E-value=12 Score=27.20 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028428 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
....|.+|..+...++|.+|...+..|+...|.+.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45688899999999999999999999999988653
No 308
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.22 E-value=11 Score=31.75 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=49.2
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028428 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
.=..|...+.|+.|.....++. +|.... . .......++..|.++.-.++|.+|.+++..|+...|.+
T Consensus 237 lLRnYL~~~~y~qA~~lvsk~~--fP~~~~-s-------n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 237 ILRDFLNNGEVDSASDFISKLE--YPHTDV-S-------SSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHC--SCTTTS-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHccCcHHHHHHHHhcCc--CCcccC-C-------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3345566778888888887764 332211 1 13456778899999999999999999999999987754
No 309
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=64.78 E-value=22 Score=21.87 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028428 160 EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 160 ~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
..++..-.++++-+|+||..+..++..-....-+...+....|.|
T Consensus 27 ~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaqSttiKa~ 71 (85)
T 2ca5_A 27 QGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVI 71 (85)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666788888887777776666666666655554443
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.04 E-value=12 Score=33.90 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=41.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028428 115 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 115 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
++..++..+.++-| ...+...|.++-.-|-+|.++...|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555567777654 34567778887788999999999999999999999874
No 311
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.76 E-value=52 Score=25.94 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=21.2
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHH
Q 028428 141 LNVKALYRRSQAHLKTSELEKAEADI 166 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (209)
.++..+..+|..|.+-+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45677788899999999998888777
No 312
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=62.49 E-value=27 Score=30.23 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028428 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 193 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~ 193 (209)
.....+|+..+..|+|.-|...+..++..+|+|..++..++.+.+++...
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999999888764
No 313
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=61.92 E-value=24 Score=21.40 Aligned_cols=48 Identities=4% Similarity=-0.027 Sum_probs=29.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHH
Q 028428 146 LYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQREY 193 (209)
Q Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~l~~~~~~~ 193 (209)
...+|+=|..+|+|+.|+.+|+.+++. .-+|+........++..+.+.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E 68 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVE 68 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHH
Confidence 355666667777777777777766643 123666666666666655543
No 314
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=60.86 E-value=5.1 Score=28.40 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=19.4
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028428 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
.|++||+..|+|.|+. ||+.+
T Consensus 51 Gm~~Ge~~~v~ippe~aYG~~~ 72 (171)
T 2k8i_A 51 GHEVGDKFDVAVGANDAYGQYD 72 (171)
T ss_dssp TCCTTCEEEEEEETTTSSCCCC
T ss_pred CCCCCCEEEEEECcHHhcCCCC
Confidence 5999999999999999 99885
No 315
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=60.81 E-value=15 Score=31.93 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=43.6
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCC
Q 028428 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE 158 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 158 (209)
.....|...+..|+|.-|.+.++.++..+|+|..+...++.+|.++|.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999999999999999999999984
No 316
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=60.57 E-value=26 Score=21.40 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=6.6
Q ss_pred hccCCHHHHHHHHHHH
Q 028428 154 LKTSELEKAEADIKRA 169 (209)
Q Consensus 154 ~~~~~~~~A~~~~~~a 169 (209)
-..|++++|+..|..+
T Consensus 30 D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3444444444444333
No 317
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=60.39 E-value=13 Score=23.50 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=17.4
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028428 113 LNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
..+|..++..|+++.|+.++-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45556666666666666666666666554
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.07 E-value=52 Score=24.32 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=37.7
Q ss_pred HHHHHHHHHh--hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028428 127 ETSSLCTKVL--ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 127 ~A~~~~~~al--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
.+...|.... .++......|...|..+...|++.+|...|+.+++..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4455555544 4567778888889999999999999999999999865
No 319
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.56 E-value=63 Score=25.16 Aligned_cols=27 Identities=11% Similarity=-0.141 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHH
Q 028428 141 LNVKALYRRSQAHLKTSELEKAEADIK 167 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (209)
.++..+..+|..|..-+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 457788889999999999999988774
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.92 E-value=65 Score=29.22 Aligned_cols=25 Identities=4% Similarity=0.108 Sum_probs=22.3
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHH
Q 028428 64 KHDGNLLFRAGKYWRASKKYEKAAK 88 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~ 88 (209)
+-.|..++..|++++|..+|.+|-.
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 5689999999999999999998754
No 321
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=56.87 E-value=6.5 Score=28.55 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=19.5
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028428 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
.|++||+.+|+|.|+. ||+.+
T Consensus 51 Gm~vGe~~~v~Ippe~aYGe~~ 72 (196)
T 2kfw_A 51 GHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_dssp SSCTTCEEEEECSTTTTSSCCC
T ss_pred CCCCCCEEEEEeCcHHhcCCCC
Confidence 5999999999999999 99876
No 322
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=55.27 E-value=2.5 Score=32.13 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC
Q 028428 52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH 94 (209)
Q Consensus 52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~ 94 (209)
..++....|..+..+|..+-+.|+|.+|+..|..|+.++-...
T Consensus 15 g~dp~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~al 57 (257)
T 2ymb_A 15 RQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 57 (257)
T ss_dssp -------------------------------------------
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3344566677788999999999999999999999998876543
No 323
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=54.12 E-value=43 Score=24.93 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-hcCHHHHHHHHHHHh
Q 028428 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL 136 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 136 (209)
+.|...|+.|+.+....-..+ .+.+.-+..|.+..|.. +++.++|+.....++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pt-------hPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567778888887764321111 14445555666655554 688888877776655
No 324
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.07 E-value=19 Score=33.38 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=40.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028428 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
.+....+..+.++.|.. .+...|.++-.-|-+|.++...|++++|..+|+++-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44555666777766543 345667777778999999999999999999998873
No 325
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=53.48 E-value=23 Score=29.05 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=23.8
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
...++.-+|.+|+.+++|++|+..+..++.
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 345677788888888888888888888875
No 326
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=53.45 E-value=23 Score=23.74 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=27.5
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028428 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
.+..+.+.|..++.+||.-+|-+.|-+|+..
T Consensus 6 lAe~yL~EA~ell~kGD~vQAsEK~ykAaee 36 (129)
T 2jpu_A 6 SAEVYYEEAEEFLSKGDLVQACEKYYKAAEE 36 (129)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5778899999999999999999998888874
No 327
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=52.72 E-value=38 Score=27.67 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhCCC--------chHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 125 YSETSSLCTKVLELEPL--------NVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
|+..+.+++.|+..-|. ...++..+|++|...++|++|....++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45667777777765332 256788899999999999999999999885
No 328
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=52.29 E-value=37 Score=20.62 Aligned_cols=23 Identities=13% Similarity=-0.093 Sum_probs=9.4
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHH
Q 028428 113 LNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
...|.-.-+.|+|++|+..|..+
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 33333333444444444444333
No 329
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=51.72 E-value=48 Score=22.10 Aligned_cols=82 Identities=9% Similarity=-0.005 Sum_probs=50.5
Q ss_pred HHHHHHHhHHHHHHHhhcCHHHHHHHHHHH---hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHH
Q 028428 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKV---LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVK 180 (209)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~ 180 (209)
+.+...+-.-+.+|+..++.+..+..+... ++.+|.. ..-.+.+.....+..+|...+++....... -..++
T Consensus 37 E~W~e~LeeASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT---~~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAW 113 (126)
T 2npu_A 37 EMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQT---LKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAW 113 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 344455566677888889999998888766 3334543 344555555666788888888887643211 12455
Q ss_pred HHHHHHHHHH
Q 028428 181 LVYMELKDKQ 190 (209)
Q Consensus 181 ~~l~~l~~~~ 190 (209)
..+..+.+++
T Consensus 114 d~Y~~Vf~rI 123 (126)
T 2npu_A 114 DLYYHVFRRI 123 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 330
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=51.40 E-value=27 Score=24.56 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028428 126 SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 126 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
..|...+..+..++|......-++..+++.+.+....+..|...+..+|. .+..+..|+....
T Consensus 73 ~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~------rL~~ie~RL~~l~ 135 (175)
T 4abx_A 73 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE------ALDRVEARLSALS 135 (175)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHH
Confidence 44566666666778877777778888888888887777777666666663 3444444444443
No 331
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=51.30 E-value=77 Score=23.99 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-hcCHHHHHHHHHHHhh
Q 028428 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE 137 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~ 137 (209)
+.|...|+.|..+. ..-..+ .+.+.-+..|.+..|.. +++.++|+..+..+++
T Consensus 173 e~a~~aY~~A~~iA-~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPT-------HPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56888999999887 422221 24455566666666664 7999999888777653
No 332
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=50.82 E-value=26 Score=28.74 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
...++.-+|.+|+.+++|++|+..+..++.
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 345677777888888888888888888875
No 333
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=49.93 E-value=56 Score=22.27 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH
Q 028428 51 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 90 (209)
Q Consensus 51 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 90 (209)
.+...-...+..+...|..+...|+.+.|--.|.+.+.+.
T Consensus 31 i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~ 70 (146)
T 2xze_A 31 IPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLF 70 (146)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3566678889999999999999999999999999976654
No 334
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.42 E-value=62 Score=22.31 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh--hhCCCchHHHHHHHHHHhccC
Q 028428 80 SKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL--ELEPLNVKALYRRSQAHLKTS 157 (209)
Q Consensus 80 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~a~~~~~~~ 157 (209)
...+.+++..+.++....+|. =|..+-.-|... ...+...|.... .+....+..|-..|..+...|
T Consensus 48 ~~lLErc~~~f~~~~~YknD~----------RyLklWl~ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g 115 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDP----------RFISYCLKFAEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQG 115 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCH----------HHHHHHHHHHTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccccCCH----------HHHHHHHHHHHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC
Confidence 455677777665544332111 133333333332 233666666655 456777888888999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 028428 158 ELEKAEADIKRALTID 173 (209)
Q Consensus 158 ~~~~A~~~~~~a~~l~ 173 (209)
++.+|...|+.+++..
T Consensus 116 ~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 116 ELQHASAVLQRGIQNQ 131 (152)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999999864
No 335
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=49.07 E-value=51 Score=27.09 Aligned_cols=48 Identities=19% Similarity=0.042 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhCCC--------chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 125 YSETSSLCTKVLELEPL--------NVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
|+..+.+++.|+..-|. ...++..+|++|...++|++|....++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 55677788888765443 2457888999999999999999999999864
No 336
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=48.81 E-value=1e+02 Score=24.79 Aligned_cols=52 Identities=8% Similarity=-0.004 Sum_probs=38.5
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~l~~~~ 190 (209)
...++-.|..+|-.+++.+++.+|+..+-.+-.. ..+|.++.+++-.|...+
T Consensus 292 ~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 349 (472)
T 3re2_A 292 SDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDL 349 (472)
T ss_dssp TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred ccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 4556777888888999999999999988777543 345677777777665444
No 337
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=48.37 E-value=45 Score=27.33 Aligned_cols=47 Identities=23% Similarity=0.114 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhCCC--------chHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 125 YSETSSLCTKVLELEPL--------NVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
|+..+.+++.|+..-|. ...++..+|++|...++|++|....++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 35667777777765432 255788899999999999999999999885
No 338
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=47.73 E-value=60 Score=26.64 Aligned_cols=30 Identities=10% Similarity=-0.080 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
...++.-+|.+|+.+++|++|+..+..++.
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 355788889999999999999999999985
No 339
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=47.66 E-value=43 Score=24.83 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=44.8
Q ss_pred HHHHHHHhHHH-----HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHH-hhcCHHHHHHHHH
Q 028428 60 CERKKHDGNLL-----FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL-KLEDYSETSSLCT 133 (209)
Q Consensus 60 a~~~~~~g~~~-----~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~ 133 (209)
+--++.+|+-+ +..|+-+.|...|..|..+.......+ .+.+.-+..|.+..|. .+++.++|.....
T Consensus 120 VFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEIln~p~~Ac~lAk 192 (227)
T 2o8p_A 120 FFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKI-------EQLPLGFIQNLAYILSEKYGEKKQVFNMLN 192 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGG-------GGSCHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCC-------ChHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 33455556554 346778899999999988754321100 1223344556555555 5789999999888
Q ss_pred HHhh
Q 028428 134 KVLE 137 (209)
Q Consensus 134 ~al~ 137 (209)
.++.
T Consensus 193 ~Afd 196 (227)
T 2o8p_A 193 SLGK 196 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 340
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=47.11 E-value=60 Score=26.89 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=26.7
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
...++.-+|.+|+.+++|++|+..+..++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4557788899999999999999999999864
No 341
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=46.92 E-value=64 Score=24.44 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-hcCHHHHHHHHHHHh
Q 028428 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL 136 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 136 (209)
+.|...|..|..+....-..+ .+.+.-+..|.+..|.. +++.++|+.....++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCC-------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 568888999988765321111 14455556666666664 788888888777765
No 342
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=46.92 E-value=65 Score=24.42 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-hcCHHHHHHHHHHHh
Q 028428 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL 136 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 136 (209)
+.|...|+.|..+.......+ .+.+.-+..|.+..|.. +++.++|+..+..|+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pT-------hPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556777777776653221111 13444455555555553 577777766665554
No 343
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=46.75 E-value=58 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=27.0
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
...++.-+|.+|+-.++|++|+..+..++..
T Consensus 196 k~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 196 KLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 4567788889999999999999999999864
No 344
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=46.70 E-value=66 Score=24.17 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-hcCHHHHHHHHHHHh
Q 028428 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL 136 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 136 (209)
+.|...|..|..+.......+ .+.+.-+..|.+..|.. +++.++|+..+..++
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPT-------HPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567888888887654322111 14445555666665554 688888877766664
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.24 E-value=72 Score=22.20 Aligned_cols=60 Identities=5% Similarity=-0.004 Sum_probs=44.5
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhhhCCCc------hHHHHH-HHHHHh--ccCCHHHHHHHHHHHHhc
Q 028428 113 LNNAACKLKLEDYSETSSLCTKVLELEPLN------VKALYR-RSQAHL--KTSELEKAEADIKRALTI 172 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~-~a~~~~--~~~~~~~A~~~~~~a~~l 172 (209)
+..+..++..|+|-+|-+.++.+-...+.. ...+.. +|.+++ ..|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445566677799999999999887765443 455666 655554 469999999999999873
No 346
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=46.23 E-value=55 Score=27.11 Aligned_cols=48 Identities=29% Similarity=0.247 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhCCC-----------chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 125 YSETSSLCTKVLELEPL-----------NVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
|+..+++++.|+..-|. ...++..+|++|...++|++|....++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34566677777654432 2457888999999999999999999999864
No 347
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=45.40 E-value=52 Score=20.31 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH
Q 028428 53 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 90 (209)
Q Consensus 53 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 90 (209)
..+....+..+.+.|.-++.+|++-.|+..+.=|--++
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwL 65 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWL 65 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999877665543
No 348
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=45.13 E-value=28 Score=28.64 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
...++.-+|.+|+..++|++|+..+..++..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4567888899999999999999999999864
No 349
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=44.03 E-value=75 Score=23.69 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHH-hhcCHHHHHHHHHHHh
Q 028428 76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL-KLEDYSETSSLCTKVL 136 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al 136 (209)
-+.|...|+.|..+....-..+ .+.+.-+..|.+..|. .+++.++|+..+..++
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPT-------NPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567888888887654322111 1444555566666655 5688888877766654
No 350
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=43.18 E-value=57 Score=20.16 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028428 52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
...+....+..+.+.|.-++.+|++-.|+..+.=|-.+
T Consensus 31 ~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~Gw 68 (87)
T 2pmr_A 31 DEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHGL 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999887655544
No 351
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.91 E-value=59 Score=20.20 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=5.4
Q ss_pred ccCCHHHHHHHHHH
Q 028428 155 KTSELEKAEADIKR 168 (209)
Q Consensus 155 ~~~~~~~A~~~~~~ 168 (209)
..|++++|+..|..
T Consensus 27 ~~g~y~eAl~~Y~~ 40 (93)
T 1wfd_A 27 AESRYQQALVCYQE 40 (93)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 33444443333333
No 352
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.45 E-value=55 Score=19.76 Aligned_cols=30 Identities=13% Similarity=0.014 Sum_probs=25.6
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028428 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
....|..+-..|+|+.|+.+|+.++.....
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 346788888899999999999999987654
No 353
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=41.99 E-value=1.1e+02 Score=25.19 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=44.8
Q ss_pred HHHHHHHHhhh-----CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHH
Q 028428 128 TSSLCTKVLEL-----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 128 A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~l~~~~ 190 (209)
++..|.+++.. ...++-.|..+|-.+++.+++.+|+..+-.+-.. ..+|.++.+++-.|...+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 371 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV 371 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHh
Confidence 34445555432 4556777888999999999999999999877554 346788888777765444
No 354
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=41.96 E-value=75 Score=26.41 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
+.-+..+..|+..+|...... + .-+.....++.-+|.+|+..++|++|+..+..++..
T Consensus 154 ~~I~~dL~~A~~~Lp~~~~~~--~--~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 154 DFILEDLKKATEMLPASYGSR--E--KGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHSCSCCCST--T--TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccccCCc--c--cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666665411000 0 001124456778888888889999999999999864
No 355
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=37.24 E-value=76 Score=24.16 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHhHHHHHHH-hhcCHHHHHHHHHHHhh
Q 028428 77 WRASKKYEKAAKIIEFHH--SFTDDEKHQANGLRLSCYLNNAACKL-KLEDYSETSSLCTKVLE 137 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~ 137 (209)
+.|...|+.|..+..... .. ..+.+.-+..|.+..|. .+++.++|+.....|++
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~p-------ThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYP-------SDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ 225 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGG-------GCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777766543211 10 01344445555555555 45777777666666554
No 356
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=37.19 E-value=91 Score=25.70 Aligned_cols=70 Identities=9% Similarity=0.016 Sum_probs=50.4
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhh---cCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-CC
Q 028428 65 HDGNLLFRAGKYWRASKKYEKAAKIIEF---HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EP 140 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p 140 (209)
..-..||+.+....|...+.. ++-... -..++ ....+..++.+|..++..++|.+|.+++..|+.. .|
T Consensus 181 ~L~kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~p-------~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKN-FQPKSMLAHFNEYQ-------LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH-hccCCCCcChhhCC-------ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 334678889999888887743 333211 11111 2345677899999999999999999999999998 77
Q ss_pred Cc
Q 028428 141 LN 142 (209)
Q Consensus 141 ~~ 142 (209)
..
T Consensus 253 ~~ 254 (455)
T 3t5v_B 253 LP 254 (455)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 357
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=37.02 E-value=1e+02 Score=25.75 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=25.4
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
...++.-+|.+|+..++|++|...+..++..
T Consensus 197 k~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 197 KQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4456777888888889999999999999863
No 358
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=36.38 E-value=7.4 Score=31.90 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH 93 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~ 93 (209)
.+.|..+..+|..+-+.|+|++|+.+|..|++.+-..
T Consensus 8 ~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~ 44 (444)
T 2zan_A 8 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 44 (444)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4456677788899999999999999999999987653
No 359
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=35.89 E-value=80 Score=25.98 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=25.8
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
...++.-+|.+|+..++|++|+..+..++.
T Consensus 179 k~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 179 QGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345778889999999999999999999985
No 360
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=35.29 E-value=93 Score=21.17 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH
Q 028428 51 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 90 (209)
Q Consensus 51 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 90 (209)
.+...=...+..+...|..+...|+...|--.|.+-+.++
T Consensus 33 ipl~~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~ 72 (144)
T 2a9u_A 33 ISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVY 72 (144)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3455557889999999999999999999999999887765
No 361
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=35.05 E-value=16 Score=29.45 Aligned_cols=38 Identities=3% Similarity=0.049 Sum_probs=29.7
Q ss_pred CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028428 2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~ 44 (209)
.|++||+..|.+..+- |+..+ .+|.++.|.|++..+..
T Consensus 207 Gmk~Ge~~~v~v~fp~dy~~~~-----laGk~~~F~V~v~~i~~ 245 (392)
T 1t11_A 207 GKTKGMEFVIDVTFPEDYHAEN-----LKGKAAKFAIKVNKVEA 245 (392)
T ss_dssp TCCSSCCCCEEEECCTTCSCTT-----TSSCEEEECCCEEEEEE
T ss_pred CCCCCCEEEEEEeCccccccCC-----CCCCeEEEEEEEEEEEc
Confidence 5999999999997554 66543 35789999999988763
No 362
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=34.40 E-value=17 Score=24.28 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=14.5
Q ss_pred CCCCccEEEEEeCccc
Q 028428 2 TMKKEEQATVTISAEY 17 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~ 17 (209)
.|++||+.+|+|.+++
T Consensus 91 gm~~Ge~~~v~ip~~~ 106 (134)
T 3b7x_A 91 SMRRGELARFLFKPNY 106 (134)
T ss_dssp TCEETCEEEEEECGGG
T ss_pred CCCCCCEEEEEECHHH
Confidence 6999999999998885
No 363
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=33.93 E-value=99 Score=20.42 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028428 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
....|......|...+..|.|+.|.....+|++.
T Consensus 12 ~~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Ek 45 (135)
T 1o3u_A 12 HMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEK 45 (135)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 4567888889999999999999988888888775
No 364
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=33.59 E-value=80 Score=19.03 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=7.6
Q ss_pred hccCCHHHHHHHHHHHH
Q 028428 154 LKTSELEKAEADIKRAL 170 (209)
Q Consensus 154 ~~~~~~~~A~~~~~~a~ 170 (209)
-..|++++|+..|..++
T Consensus 24 D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34444444444444443
No 365
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=33.41 E-value=2.1e+02 Score=23.72 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhCCC-----------chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 125 YSETSSLCTKVLELEPL-----------NVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
|+..+++++.|+..-|. ...++..+|++|...++|++|....++++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777654332 2457888999999999999999999999863
No 366
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.92 E-value=1.3e+02 Score=22.18 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC
Q 028428 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS 157 (209)
Q Consensus 114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 157 (209)
..-.++++.|.|++|.+.+.+.+.-+|.+.+.-..+..+-.+.+
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 33455678899999999999998887777666555655544444
No 367
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=32.67 E-value=88 Score=25.62 Aligned_cols=30 Identities=17% Similarity=-0.098 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 143 VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
..++-.+|++|...++|++|....++++..
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 457888999999999999999999999864
No 368
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=32.25 E-value=73 Score=25.66 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
++..|.+||......-.. -++--|..+|.++.+.+++.+|+..+-.+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n----------~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSD----------HHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTT----------CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc----------CCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 666777777655432211 1233588899999999999999998877654
No 369
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.27 E-value=1.2e+02 Score=24.91 Aligned_cols=30 Identities=10% Similarity=-0.059 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 143 VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
..++..+|++|...++|++|....++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 347788999999999999999999999853
No 370
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=31.27 E-value=1.1e+02 Score=19.78 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028428 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
..-...|......+...+..|.|+.|.....+|++.
T Consensus 5 ~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek 40 (127)
T 1ufb_A 5 RDWLEQARHNLRHAQGSLGLGDYAWACFAAQQAAEA 40 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 345677888889999999999999988888888764
No 371
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=31.16 E-value=1.1e+02 Score=19.71 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028428 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
..-+..|......+...+..|.|+.|.....+|++.
T Consensus 5 ~~wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek 40 (122)
T 1wol_A 5 EDWIKQAERDLEEARYAKSGGYYELACFLSQQCAEK 40 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345677888889999999999999988888887765
No 372
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=36.42 E-value=11 Score=32.88 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=43.1
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHH
Q 028428 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEK 161 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~ 161 (209)
.....|.-.+..|+|.-|.+.++.++..+|+|..+...++.+|.++|.-.+
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 455667777788999999999999999999999999999999999985444
No 373
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=30.11 E-value=1.5e+02 Score=24.18 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=42.0
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC--Ch--H---H-HHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028428 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF--TD--D---E-KHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~--~~--~---~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
...++.+...++|.+|--.+.....+...+... ++ . . ..........++...+..+.+-+.|+.|+..|..+
T Consensus 39 ~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~L 118 (436)
T 2yin_A 39 YKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKEL 118 (436)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 456788888999999988875444443322211 00 0 0 00012233345555555555667788888888777
Q ss_pred hhh
Q 028428 136 LEL 138 (209)
Q Consensus 136 l~~ 138 (209)
+..
T Consensus 119 ~~~ 121 (436)
T 2yin_A 119 AEQ 121 (436)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 374
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.31 E-value=85 Score=25.80 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028428 79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
++..|.+||......-.. -++--|..+|.++.+.+++.+|+..+-.+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n----------~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRD----------EHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTT----------CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc----------CCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 566677766654432211 1233588899999999999999998877654
No 375
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=28.88 E-value=96 Score=18.52 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028428 164 ADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 207 (209)
Q Consensus 164 ~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 207 (209)
..|+..++..-.++++..+...+++.......+.+....+|+++
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34777777777788999999999988888888888888777654
No 376
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.72 E-value=1.7e+02 Score=21.21 Aligned_cols=86 Identities=8% Similarity=0.004 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh--hhCCCchHHHHHHHHHHhccCC
Q 028428 81 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL--ELEPLNVKALYRRSQAHLKTSE 158 (209)
Q Consensus 81 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~a~~~~~~~~ 158 (209)
..+.+|+..+.++....+|. -...+|...+.++ ..+....+...|.... .++......|-..|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~------RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDP------RFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCH------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCH------HHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC
Confidence 56778887776654432211 1223333333332 1233557777776665 4567778888899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 028428 159 LEKAEADIKRALTID 173 (209)
Q Consensus 159 ~~~A~~~~~~a~~l~ 173 (209)
+.+|...|+.+++..
T Consensus 131 ~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 131 FLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999865
No 377
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=28.03 E-value=82 Score=17.46 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHh
Q 028428 53 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 91 (209)
Q Consensus 53 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~ 91 (209)
..+....+..+-.-+.....-.+...|+....+|+.++.
T Consensus 13 ~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~ 51 (53)
T 2rkl_A 13 RASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLN 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHh
Confidence 345566788888888888888999999999999998764
No 378
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=27.60 E-value=1.2e+02 Score=19.41 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKII 90 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 90 (209)
..++.+.-.+....+.|+|++|.....+|=..+
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l 50 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEAGSCI 50 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 446677778888899999999999988876643
No 379
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=27.03 E-value=90 Score=25.69 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhCCC--------chHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028428 125 YSETSSLCTKVLELEPL--------NVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
|+..+++++.|+..-|. ...++..+|++|...++|++|....++++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45667777777765442 245788899999999999999999988874
No 380
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=27.03 E-value=1.2e+02 Score=18.94 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 143 VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
.......|.-+++.+++.+|...|+++..+
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 344555566677777777777777777644
No 381
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=27.01 E-value=92 Score=20.08 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=36.0
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHH
Q 028428 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 167 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (209)
-.-+....+..|+|++|....+... +++.--..|.|-.+.|-.+++...+.
T Consensus 43 ~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 43 QLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRLN 93 (116)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHH
Confidence 3445567778999999877665432 45555566778888898888887763
No 382
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=26.89 E-value=1.3e+02 Score=19.22 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKII 90 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 90 (209)
..++.+.-.+....+.|+|++|.....+|=..+
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l 48 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQSRMAL 48 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 446677788888899999999999988876643
No 383
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=26.87 E-value=2.6e+02 Score=22.83 Aligned_cols=47 Identities=4% Similarity=-0.157 Sum_probs=35.2
Q ss_pred HH-HHHHHHHHHhhh-CC--------CchHHHHHHHHHHhccC---------CHHHHHHHHHHHHh
Q 028428 125 YS-ETSSLCTKVLEL-EP--------LNVKALYRRSQAHLKTS---------ELEKAEADIKRALT 171 (209)
Q Consensus 125 ~~-~A~~~~~~al~~-~p--------~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~a~~ 171 (209)
|+ ..+.+++.|+.. -| ....++..+|++|...+ +|++|....++++.
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 45 566677777765 33 12457788899998888 89999999999886
No 384
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.86 E-value=1.3e+02 Score=21.81 Aligned_cols=45 Identities=4% Similarity=0.019 Sum_probs=26.8
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhcc
Q 028428 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT 156 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~ 156 (209)
-...-.++++.|.|++|.+.+.+...-++.+.+.-..+..+-.+.
T Consensus 120 k~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~K 164 (211)
T 3bqo_A 120 KIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQK 164 (211)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHcc
Confidence 344456777889999999999998888777766544444443333
No 385
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=26.83 E-value=92 Score=18.17 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028428 164 ADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 207 (209)
Q Consensus 164 ~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 207 (209)
..|+..++..-.++.+..+...+++.......+.+....+|+++
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34666677666778888888888888877777777777776653
No 386
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.88 E-value=80 Score=23.30 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhhCCCchH------HHHHHH--HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028428 125 YSETSSLCTKVLELEPLNVK------ALYRRS--QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~~~~------~~~~~a--~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
.+.|+..++.+-.-.+-..+ -+...+ .+..+.|.|++|...+++.+.-+|.+......|..|-+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 56777777766655543222 122222 35578999999999999999987777767666666543
No 387
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.71 E-value=1.3e+02 Score=18.90 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=10.5
Q ss_pred HhHHHHHHHhhcCHHHHHHHHH
Q 028428 112 YLNNAACKLKLEDYSETSSLCT 133 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~ 133 (209)
+..+|..+++.|.|++||+...
T Consensus 18 ~~RrAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHH
Confidence 3444444455555555544443
No 388
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=25.66 E-value=81 Score=24.22 Aligned_cols=104 Identities=7% Similarity=-0.088 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh----cCCCChHHHHHHHHHHHHHHhHHHHHH----Hhhc
Q 028428 52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF----HHSFTDDEKHQANGLRLSCYLNNAACK----LKLE 123 (209)
Q Consensus 52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~ 123 (209)
..++...+.--+.++.......|+.+..+...+-.|.-+.. ... ...-...+....+.+++.++... ++.+
T Consensus 14 ~~~d~~sql~gly~msre~le~g~i~~sv~LLNGIIHECDRLLR~~e~-~~~Lpd~FhAIYAlALl~lSELa~~a~Fk~e 92 (346)
T 3qtm_A 14 TEEDNISQLWGLYEMSREKLENDDIDASVSLVFGTIHEADRILRNTED-ISTLPKDFHAAYSSALLAVSELFEIAQKRLK 92 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSC-GGGSCHHHHHHHHHHHHHHHHTHHHHGGGSC
T ss_pred eccchHHHHHhHHHHHHHHhhccCchhhhHHHcChHHHHHHHHHccCC-CCCCCHHHHHHHHHHHHhHHHhhHHhhccCc
Confidence 44555555666788999999999999999887766543322 110 00000111122222221112222 2222
Q ss_pred -------CHHHHHHHHHHHhhhCCCchHHHHHHHHHHhcc
Q 028428 124 -------DYSETSSLCTKVLELEPLNVKALYRRSQAHLKT 156 (209)
Q Consensus 124 -------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~ 156 (209)
-|+.|++-++..++..|+++...+.+++++...
T Consensus 93 de~~V~eFFDaALERielGLe~~p~s~~L~la~SKILlqr 132 (346)
T 3qtm_A 93 ETNTEESYIDAAIERAQLGLDAPGNESRLFLALARAYLEK 132 (346)
T ss_dssp TTCCHHHHHHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHH
Confidence 267788888888888999888777777776643
No 389
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=25.52 E-value=1.3e+02 Score=18.82 Aligned_cols=63 Identities=8% Similarity=0.013 Sum_probs=41.0
Q ss_pred HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh---CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLEL---EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+....+-.-+..|+..++.+..+..+....+. .|. ...-.+.+...-.+..+|...+++....
T Consensus 8 ~W~e~LeeAsr~~f~~~n~~~m~~~L~pLh~~l~~~pe---T~~E~sF~~~fG~~L~~A~~~~~~y~~t 73 (94)
T 3fap_B 8 MWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQ---TLKETSFNQAYGRDLMEAQEWCRKYMKS 73 (94)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555566788888888888888877655 454 3344444445556777788887776554
No 390
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=31.31 E-value=15 Score=32.02 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028428 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
.....+|...+..|++.-|...++.++..+|+|..++..++.+.+++....
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 456678888889999999999999999999999999999999888876543
No 391
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=24.33 E-value=1.5e+02 Score=19.13 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH
Q 028428 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 90 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 90 (209)
...++.+.-.+....+.|+|++|.....+|=..+
T Consensus 19 aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~l 52 (109)
T 3k1s_A 19 SGNARSFAMEALQFAKQGKMAEADEAMVKAKEAI 52 (109)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456777788888899999999999988886543
No 392
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=23.79 E-value=1.2e+02 Score=24.84 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=19.4
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028428 111 CYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
-|..+|.++.+.++|.+|+..+..+-
T Consensus 305 PYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 305 PYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ceeecchHHHHhhhHHHHHHHhhhhh
Confidence 46777778888888888887776664
No 393
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=23.40 E-value=3.3e+02 Score=22.82 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhh-CCCchHHHHHHHHHHhccCC
Q 028428 125 YSETSSLCTKVLEL-EPLNVKALYRRSQAHLKTSE 158 (209)
Q Consensus 125 ~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~ 158 (209)
|++|+.+++++-.- ++.....+...+.-|..-||
T Consensus 455 Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 455 YKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 56666666666533 34445666666665554444
No 394
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=23.33 E-value=89 Score=20.11 Aligned_cols=52 Identities=6% Similarity=-0.133 Sum_probs=36.2
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHH
Q 028428 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 168 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (209)
-.-+....+..|+|++|....+... +++.--..|.|-.+.|-.+++...+.+
T Consensus 42 ~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 42 RLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3445567778899998865543322 455556677888899999998877743
No 395
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.24 E-value=43 Score=24.35 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=24.9
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028428 151 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 151 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
.+..+.|.|++|...|++...-+|.+...+..|..|
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 578899999999999999988887776665555554
No 396
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.71 E-value=3.2e+02 Score=22.45 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=40.1
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHH
Q 028428 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~l~~~~ 190 (209)
...++-.|..+|-.+++.+++.+|+..+-.+-.. ..+|.++.+.+..+...+
T Consensus 299 ~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanel 356 (489)
T 4gq4_A 299 RDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV 356 (489)
T ss_dssp TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTH
T ss_pred ccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHh
Confidence 4455777888899999999999999999887554 456788888776665544
No 397
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=22.64 E-value=2.4e+02 Score=22.30 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Q 028428 144 KALYRRSQAHLKTSELEKAEADIKRA 169 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a 169 (209)
.++|..|..+...+++-+|+..++.+
T Consensus 254 ~A~y~~a~~~~~~~k~GeaIa~L~~A 279 (376)
T 3r9m_A 254 YAYCYHGETLLASDKCGEAIRSLQEA 279 (376)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34444455454455555444444443
No 398
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=21.94 E-value=1.7e+02 Score=19.21 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.7
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH
Q 028428 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKII 90 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 90 (209)
..++.+.-.+....+.|+|++|.....+|=..+
T Consensus 35 G~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l 67 (120)
T 3l8r_A 35 GNARSIVHEAFDAMREKNYILAEQKLQEANDEL 67 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 346667777888889999999999988886543
No 399
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=21.68 E-value=2e+02 Score=23.93 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhCCC-------------chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028428 125 YSETSSLCTKVLELEPL-------------NVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~-------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
++..+++++.|+..=|. ...|+..+|++|...++|++|....+.++..
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34556666667654441 1357888999999999999999999999863
No 400
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=20.90 E-value=1.2e+02 Score=23.61 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028428 125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
|+.|++-++..++..|++....+.++.++...=+..-+...-..-+.-.|-...+......+...++
T Consensus 148 FDaALERielGLe~~p~s~~L~la~sKIllqrI~~v~~~~s~eE~~~~~p~~~ta~kmi~qa~~~l~ 214 (393)
T 3msv_A 148 IDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLR 214 (393)
T ss_dssp HHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHH
Confidence 6778888888888889888877777777664433322222222222223434444444444443333
Done!