BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028429
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QV0|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Mam33
Length = 227
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 125 SVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVK 184
SV N +E + Y GP F +LDE ++++L +Y+E RGVNE L F+ A+ K
Sbjct: 151 SVDAALNQSAEAEITRELVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFK 210
Query: 185 DNRNLMHWFRQVGQYI 200
+N + W ++ ++
Sbjct: 211 ENNEYISWLEKMKKFF 226
>pdb|3JV1|A Chain A, Crystal Structure Of The Trypanosoma Brucei P22 Protein
Length = 182
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 144 YTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYIS 201
Y GP DL++ + D+ SY+ RGVN++L F+ + + + W + +++S
Sbjct: 125 YMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSEQADYEEWLSSINKFVS 182
>pdb|1YQF|A Chain A, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|B Chain B, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|C Chain C, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|D Chain D, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|E Chain E, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|F Chain F, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
Length = 203
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 17/183 (9%)
Query: 24 RDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRXXX 83
R+ EE+ + P + +PP+ + +V+ + K G + + Y T +
Sbjct: 33 RELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSH 92
Query: 84 XXXXXXXXINQLFLHVEMS-KPGQK--NSLLFL--CGLYPDALGIHSVSMRPNLESEGIL 138
N + ++S + G+ N++ F L D G + + R L
Sbjct: 93 NIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDT-GAEAEAKRNEL------ 145
Query: 139 VVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQ 198
YTGP +LD + + + +Y+E+RGV+E L F+ + + + ++ W + +
Sbjct: 146 -----YTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNK 200
Query: 199 YIS 201
+ S
Sbjct: 201 FAS 203
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 149 FQDLDERMRDALHSYIEERGVNESLFPFLQAW 180
F D DER ++ +H+ + G+ +FP + W
Sbjct: 277 FSDWDERYKELIHTTLSFVGLATRIFPLEKPW 308
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 148 SFQDLDERMRDALHSYIEERGVNESLFPFLQAW 180
F D DER ++ +H+ + G+ +FP + W
Sbjct: 276 EFSDWDERYKELIHTTLSFVGLATRIFPLEKPW 308
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 149 FQDLDERMRDALHSYIEERGVNESLFPFLQAW 180
F D DER ++ +H+ + G+ +FP + W
Sbjct: 257 FSDWDERYKELIHATLSFVGLATRIFPLEKPW 288
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 149 FQDLDERMRDALHSYIEERGVNESLFPFLQAW 180
F D DER ++ +H+ + G+ +FP + W
Sbjct: 257 FSDWDERYKELIHTTLSFVGLATRIFPLEKPW 288
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 149 FQDLDERMRDALHSYIEERGVNESLFPFLQAW 180
F D DER ++ +H+ + G+ +FP + W
Sbjct: 278 FSDWDERYKELIHTTLSFVGLATRIFPLEKPW 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,908,079
Number of Sequences: 62578
Number of extensions: 220049
Number of successful extensions: 510
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 9
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)