BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028429
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94675|MAM33_SCHPO Mitochondrial acidic protein mam33 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC776.07 PE=3 SV=1
Length = 269
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 99 VEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLES------EGILVVPSQYTGPSFQDL 152
+E+SKPG +L+F D I ++ +++ E QY GPSF++L
Sbjct: 162 IEISKPG-NGALVFEATALDDGFDIENIYFSKDIDMLTSDSLEAEWKRRKQYLGPSFKEL 220
Query: 153 DERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
D ++D HSY+EER ++ESL F+ ++ K+ + ++W V Q++
Sbjct: 221 DPELQDLFHSYLEERKIDESLSSFIVSFGLTKELKEYINWLESVRQFL 268
>sp|P40513|MAM33_YEAST Mitochondrial acidic protein MAM33 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MAM33 PE=1 SV=1
Length = 266
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 24/180 (13%)
Query: 45 FTIVKGALDTHGPVLKRMYGSEQISIY--VTRLGNIIRGGDDDDD---DDDGINQ----- 94
F++V+ +++R E + ++ V ++ N+ D++ ++DGIN+
Sbjct: 86 FSLVETPGKNEAEIVRRTESGETVHVFFDVAQIANLPYNNAMDENTEQNEDGINEDDFDA 145
Query: 95 -----LFLHVEMSKPGQKN---SLLFLCGLYPDALGIHSVSMRP------NLESEGILVV 140
++V +SK S L L + + S + P N +E +
Sbjct: 146 LSDNFANVNVVISKESASEPAVSFELLMNLQEGSFYVDSATPYPSVDAALNQSAEAEITR 205
Query: 141 PSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
Y GP F +LDE ++++L +Y+E RGVNE L F+ A+ K+N + W ++ ++
Sbjct: 206 ELVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFF 265
>sp|Q8W487|YB95_ARATH Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis
thaliana GN=At2g39795 PE=1 SV=1
Length = 250
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 109 SLLFLCGLYPDALGIHSVSMR-PNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEER 167
+L F C +PD + I ++S++ P E L GP F+DLDE ++ + ++E R
Sbjct: 160 TLEFSCMAFPDEIAIDALSVKHPGDSLEDQLA----NEGPDFEDLDENLKKTFYKFLEIR 215
Query: 168 GVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
GV S FL ++ K NR W + V +++
Sbjct: 216 GVKASTTNFLHEYMTRKVNREYFLWLKNVKEFM 248
>sp|O22288|Y2979_ARATH Uncharacterized protein At2g39790, mitochondrial OS=Arabidopsis
thaliana GN=At2g39790 PE=3 SV=2
Length = 240
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 109 SLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERG 168
S+ F C Y D + + +++ G + P F++LD+ ++ A H Y+ R
Sbjct: 154 SIEFTCQAYADYIDLTDLTVHDYQYQMG------ETDWPRFKNLDDNLKKAFHRYLATR- 206
Query: 169 VNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISG 202
++ ++ L ++ K R + W + V +++ G
Sbjct: 207 LDANITKLLHKYMVSKIKREYLLWLKNVNKFVDG 240
>sp|Q28644|SCN9A_RABIT Sodium channel protein type 9 subunit alpha OS=Oryctolagus cuniculus
GN=SCN9A PE=2 SV=1
Length = 1984
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 22 SLRDHYEEVAKMTPPPKVS-PPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNI-I 79
SLR EE P KVS P + T+ + D V++R Y ++ V + +I I
Sbjct: 1855 SLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSATVIQRAYRRYRLRQNVKNISSIYI 1914
Query: 80 RGGDDDDDDDDGINQLFLHVEMSKPGQKNS 109
+ GD DDD + + +F +V S P + ++
Sbjct: 1915 KEGDKDDDLPNKGDIVFDNVNSSSPEKTDA 1944
>sp|P13991|TNSD_ECOLX Transposon Tn7 transposition protein TnsD OS=Escherichia coli
GN=tnsD PE=4 SV=1
Length = 508
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 120 ALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRD---ALHSYIEERGVNESLFP- 175
AL HS++ RP SQ P+ +DL + +D +H Y + +SL
Sbjct: 309 ALTEHSITTRP----------VSQSVQPNSEDLSVKHKDWQQLVHKYQGIKAARQSLEGG 358
Query: 176 FLQAWLYVKDNRNLMHWFRQVGQ 198
L AWLY D L+HW +Q Q
Sbjct: 359 VLYAWLYRHDRDWLVHWNQQHQQ 381
>sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A
PE=1 SV=3
Length = 1988
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 22 SLRDHYEEVAKMTPPPKVS-PPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNI-I 79
SLR EE P KVS P + T+ + D V++R Y ++ V + +I I
Sbjct: 1858 SLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSATVIQRAYRRYRLRQNVKNISSIYI 1917
Query: 80 RGGDDDDD 87
+ GD DDD
Sbjct: 1918 KDGDRDDD 1925
>sp|Q5W7F1|ASAH2_DANRE Neutral ceramidase OS=Danio rerio GN=asah2 PE=1 SV=1
Length = 743
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 8 TTSGFAVVDSILLRSLRDHYEEVAKMTPPPKVSPPSS-FTIVKGALDTHGPV 58
T A++ + L+ D EEV P P V+PP + I G D GPV
Sbjct: 23 TAVSVALITVLALKQESDKKEEVTPEEPSPSVTPPEKPYLIGVGRADCTGPV 74
>sp|Q62904|DHB7_RAT 3-keto-steroid reductase OS=Rattus norvegicus GN=Hsd17b7 PE=1 SV=1
Length = 334
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 65 SEQISIY---VTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDAL 121
S ++SI V+ L +++RG ++ ++ L+L+ + Q N F CG++ +
Sbjct: 54 SAEVSIVQMDVSNLQSVVRGAEEVKRRFQRLDYLYLNAGIMPNPQLNLKAFFCGIFSRNV 113
Query: 122 GIHSVSMRPNLESEGILVVPSQYTGPSFQDLDE 154
IH S +EG+L + T FQ++ E
Sbjct: 114 -IHMFS-----TAEGLLTQNDKITADGFQEVFE 140
>sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana
GN=ARI7 PE=2 SV=1
Length = 562
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 148 SFQDLDERMRDALHSYIEERGVNESLFPF-LQAWLYVKDNRNLMHWFRQVGQYISGKNHA 206
+ DL + L +++ ES F L+AWL + + R ++ W G Y+ HA
Sbjct: 388 AMADLQQAQMQNLEKLSDKQCTPESQLKFILEAWLQIIECRRVLKWTYAYGYYLPEHEHA 447
Query: 207 K 207
K
Sbjct: 448 K 448
>sp|Q62205|SCN9A_MOUSE Sodium channel protein type 9 subunit alpha OS=Mus musculus GN=Scn9a
PE=1 SV=2
Length = 1984
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 22 SLRDHYEEVAKMTPPPKVS-PPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNI-I 79
SLR EE P KVS P + T+ + D +++R Y ++ V + +I I
Sbjct: 1856 SLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSATIIQRAYRRYRLRQNVKNISSIYI 1915
Query: 80 RGGDDDDDDDDGINQLFLHV-EMSKPGQKNS 109
+ GD DDD + + +F +V E S P + ++
Sbjct: 1916 KDGDRDDDLPNKEDIVFDNVNENSSPEKTDA 1946
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,798,028
Number of Sequences: 539616
Number of extensions: 3657252
Number of successful extensions: 14311
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 14290
Number of HSP's gapped (non-prelim): 36
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)