Query 028429
Match_columns 209
No_of_seqs 124 out of 324
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 18:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jv1_A P22 protein; MAM33 fami 100.0 2.2E-50 7.4E-55 332.4 22.5 175 13-201 1-182 (182)
2 1yqf_A Hypothetical protein LM 100.0 3.5E-50 1.2E-54 336.3 21.4 187 2-201 10-203 (203)
3 1p32_A Mitochondrial matrix pr 100.0 2.2E-47 7.6E-52 320.5 22.1 184 12-203 2-209 (209)
4 3qv0_A Mitochondrial acidic pr 100.0 2.3E-44 8E-49 304.6 15.6 185 15-201 10-227 (227)
5 1t5q_A Gastric inhibitory poly 79.7 3.2 0.00011 23.7 4.0 25 171-195 4-28 (30)
6 1jrj_A Exendin-4; Trp-CAGE, GL 77.1 2.6 8.9E-05 25.5 3.2 26 172-197 5-30 (39)
7 3c5t_B Exendin-4, exenatide; l 75.7 2.1 7.2E-05 24.6 2.5 20 178-197 3-22 (31)
8 2g49_C Glucagon preproprotein; 70.6 4.6 0.00016 22.9 3.0 24 172-195 5-28 (29)
9 3iol_B Glucagon; receptor-liga 68.5 4 0.00014 23.4 2.5 23 173-195 6-28 (31)
10 2l63_A GLP-2, glucagon-like pe 68.2 3.7 0.00013 24.0 2.3 24 172-195 5-28 (33)
11 3vcf_A Probable integrase; cat 67.8 9 0.00031 30.2 5.4 44 152-195 104-162 (163)
12 1m06_J J protein, small core p 56.9 5.3 0.00018 21.6 1.5 14 1-14 1-14 (26)
13 2rrh_A VIP peptides; peptide h 52.6 27 0.00093 19.5 4.1 24 172-195 5-28 (29)
14 2b4n_A Gastric inhibitory poly 50.4 10 0.00035 23.2 2.2 21 177-197 10-30 (42)
15 1ci4_A Protein (barrier-TO-aut 49.4 14 0.00049 26.2 3.2 38 159-196 29-66 (89)
16 2hzq_A Apolipoprotein D, APO-D 42.2 84 0.0029 23.5 7.0 49 107-172 105-153 (174)
17 2k9i_A Plasmid PRN1, complete 41.4 57 0.0019 19.6 5.1 30 151-182 15-44 (55)
18 2zop_A Putative uncharacterize 40.2 38 0.0013 24.7 4.5 43 154-197 60-108 (114)
19 3htu_A Vacuolar protein-sortin 37.6 31 0.0011 23.8 3.4 24 145-168 40-63 (79)
20 2xst_A Lipocalin 15; transport 33.4 1.3E+02 0.0046 21.6 6.9 22 151-172 128-149 (161)
21 1gff_3 Bacteriophage G4 capsid 32.0 15 0.00052 19.7 0.8 12 3-14 4-15 (26)
22 2d2p_A Pituitary adenylate cyc 30.0 77 0.0026 18.9 3.8 24 172-195 5-28 (39)
23 1e5p_A Aphrodisin; lipocalin, 28.7 43 0.0015 24.4 3.2 23 150-172 116-138 (151)
24 2k6x_A Sigma-A, RNA polymerase 28.3 59 0.002 21.4 3.5 20 152-171 40-59 (72)
25 3ebw_A PER A 4 allergen; beta 27.8 1.9E+02 0.0064 21.6 6.9 22 151-172 129-150 (163)
26 1z24_A Insecticyanin A form; b 27.7 1.5E+02 0.0052 22.5 6.4 22 151-172 140-163 (189)
27 3ewt_E Tumor necrosis factor r 27.3 22 0.00076 19.3 0.9 12 193-204 13-24 (25)
28 2jxj_A Histone demethylase jar 27.0 36 0.0012 23.7 2.3 26 146-171 1-26 (96)
29 1kxo_A DIGA16; lipocalin, anti 25.7 1.3E+02 0.0046 22.7 5.7 48 108-172 109-158 (184)
30 1bj7_A D 2; allergen, lipocali 25.5 50 0.0017 24.3 3.1 22 151-172 122-143 (156)
31 2lep_A Rhomboid protease GLPG 31.0 15 0.00052 24.4 0.0 21 154-174 10-30 (69)
32 2dmj_A Poly (ADP-ribose) polym 24.4 51 0.0018 23.7 2.8 25 148-172 80-104 (106)
33 3sao_A Extracellular fatty aci 24.4 51 0.0017 24.5 2.9 22 151-172 119-140 (160)
34 3o22_A Prostaglandin-H2 D-isom 23.4 62 0.0021 23.9 3.3 23 150-172 125-147 (162)
35 1gka_B Crustacyanin A2 subunit 23.1 2.2E+02 0.0075 20.9 6.4 22 151-172 138-159 (174)
36 1dzk_A PIG OBP, odorant-bindin 23.0 64 0.0022 23.6 3.2 23 151-173 123-145 (157)
37 1lf7_A Complement protein C8ga 22.6 64 0.0022 24.5 3.3 22 151-172 136-157 (182)
38 2hlv_A Odorant-binding protein 22.2 68 0.0023 23.6 3.3 22 151-172 124-145 (160)
39 3zr8_X AVR3A11; protein bindin 21.3 74 0.0025 21.1 2.8 25 183-207 20-50 (65)
40 2wvi_A Mitotic checkpoint seri 21.0 80 0.0027 24.5 3.5 30 158-187 80-109 (164)
41 3fiq_A OBP1, RCG36470, odorant 20.5 76 0.0026 23.6 3.2 24 150-173 122-145 (157)
42 1ew3_A Allergen EQU C 1; lipoc 20.5 78 0.0027 23.1 3.3 24 150-173 121-144 (159)
43 2ouf_A Hypothetical protein; s 20.3 93 0.0032 22.1 3.4 40 157-196 41-89 (94)
44 3s26_A Neutrophil gelatinase-a 20.1 76 0.0026 24.4 3.2 23 150-172 144-166 (190)
45 1i4u_A Crustacyanin; lipocalin 20.1 2.8E+02 0.0096 20.8 7.5 22 151-172 141-162 (181)
No 1
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=100.00 E-value=2.2e-50 Score=332.42 Aligned_cols=175 Identities=22% Similarity=0.367 Sum_probs=152.7
Q ss_pred chhHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCCCCCCCCCCCCCC
Q 028429 13 AVVDSILLRSLRDHYEEVAKMTP-PPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDG 91 (209)
Q Consensus 13 ~~~d~~Ll~~L~~Ei~~~~~~~~-~~~~~~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~~~~~e~e~d~e~ 91 (209)
++.|++|+++|++||+++++... +..++.|.||+|.++||. ++|+|+|+||+|+|+|+|++.+. + +.
T Consensus 1 ~~~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~f~i~d~pG~-~~v~L~r~~~~E~I~V~f~~~~e--------d---d~ 68 (182)
T 3jv1_A 1 AVSDQRLSEATLRELEDERQRAGLPEKPEIPEGWTIDRKPGV-THFTMRKSHGDEEIILQLTGEDR--------S---NE 68 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCTTCEEECCTTC-CSCEEEEEETTEEEEEEEEEECS--------S---CS
T ss_pred CcchHHHHHHHHHHHHHHHhcccccCCCCCCCCCEEEecCCC-cEEEEEEEeCCcEEEEEEecCCc--------c---cc
Confidence 36799999999999998877654 334556789999999985 99999999999999999996421 1 13
Q ss_pred CcceeEEEEEEcCCCCceEEEEEeeeCCeEEEeEEEeecCccc------cCcccCCCCcCCCCCCCccHHHHHHHHHHHH
Q 028429 92 INQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLES------EGILVVPSQYTGPSFQDLDERMRDALHSYIE 165 (209)
Q Consensus 92 ~~~~~~~V~ItK~~~~~~L~f~c~~~~~e~~I~~v~~~~~~~~------~~~~~~~~~Y~GP~F~~LDe~Lq~~~~~YLe 165 (209)
.++++|+|+|+| + +++|+|+|++++|+|.|++|+++++... ++.|.+...|.||+|++||++||++|++||+
T Consensus 69 ~~~~~~~V~I~K-~-~~~L~f~c~~~~~~~~I~~v~~~~~~~~a~~~~~e~~~~~~~~Y~GP~f~~LDe~Lq~~l~~yLe 146 (182)
T 3jv1_A 69 EITRTLDVLVVN-G-GKALVFGMSVEDGEFVINNVCFRHDGKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYLS 146 (182)
T ss_dssp SCCEEEEEEEEE-T-TEEEEEEEEEETTEEEEEEEEEESCHHHHHCCSHHHHHHHTTSCCCCCGGGSCHHHHHHHHHHHH
T ss_pred ccCccEEEEEEE-C-CcEEEEEEEecCCEEEEEEEEEeccchhhccccccccccccccccCCCccccCHHHHHHHHHHHH
Confidence 468999999999 5 7999999999999999999999986421 1235567899999999999999999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028429 166 ERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYIS 201 (209)
Q Consensus 166 eRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~ 201 (209)
+||||++||+||++||++|||+||++||++|++||+
T Consensus 147 eRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fvs 182 (182)
T 3jv1_A 147 ARGVNDTLANFIDQFSLWSEQADYEEWLSSINKFVS 182 (182)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999996
No 2
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=100.00 E-value=3.5e-50 Score=336.26 Aligned_cols=187 Identities=17% Similarity=0.289 Sum_probs=150.5
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCCC
Q 028429 2 IARRRSTTSGFAVVDSILLRSLRDHYEEVAKMTP-PPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIR 80 (209)
Q Consensus 2 ~~~~~~~~~~~~~~d~~Ll~~L~~Ei~~~~~~~~-~~~~~~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~~ 80 (209)
-|+-=.+...+++.|+.|+++|++||+++.+... |+.+++|.||+|.++||. ++|+|+|+||+|+|+|+|++.+.. .
T Consensus 10 ~~~~~~~~~~~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~p~~F~i~d~pG~-~~v~L~R~~~~E~I~V~f~~~~~~-~ 87 (203)
T 1yqf_A 10 SAPTALTVPRRSASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGT-CTFDLTKSFEGEDLVVRYSTNQDS-D 87 (203)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCSSCCCCCCCCTTCEEEECTTS-SEEEEEEEETTEEEEEEEESCCCS-S
T ss_pred ccccceeccccCcchHHHHHHHHHHHHHHHhcccCCCCCCCCCCcEEEecCCC-cEEEEEEecCCeEEEEEEEcCCCC-C
Confidence 3444445666788999999999999998777543 333445679999999985 899999999999999999965322 1
Q ss_pred CCCCCCCCCCCCcceeEEEEEEcCCCCceEEEEEeeeCCeEEEeEEEeecCccc------cCcccCCCCcCCCCCCCccH
Q 028429 81 GGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLES------EGILVVPSQYTGPSFQDLDE 154 (209)
Q Consensus 81 ~~~e~e~d~e~~~~~~~~V~ItK~~~~~~L~f~c~~~~~e~~I~~v~~~~~~~~------~~~~~~~~~Y~GP~F~~LDe 154 (209)
+ ++ + + +|+|+|+|++ +++|+|.|++++|+|.|++|+++++... ++.|.+...|.||.|++||+
T Consensus 88 --~-----de-~-s-~~~V~I~K~~-~~~L~f~C~~~~~~~~I~~v~~~~~~~~~~~~~~e~~~~~~~~Y~GP~F~~LDe 156 (203)
T 1yqf_A 88 --K-----AN-S-H-NIFVYITQKN-GQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDY 156 (203)
T ss_dssp --C-----SS-C-E-EEEEEEECTT-SCEEEEEEEEETTEEEEEEEEEESSHHHHHCCSHHHHHHHHHSCCCCCGGGSBH
T ss_pred --C-----CC-c-c-eEEEEEEeCC-CCEEEEEEEecCCEEEEEEEEEeccccccccccccccccccccccCCCcccCCH
Confidence 1 12 2 3 9999999987 7999999999999999999999986421 12344567899999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028429 155 RMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYIS 201 (209)
Q Consensus 155 ~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~ 201 (209)
+||++|++||++||||++||+||++||++|||+||++||++|++||+
T Consensus 157 ~Lq~~l~~YLeeRGI~~~la~fl~~y~~~KE~~EYi~WL~~lk~Fv~ 203 (203)
T 1yqf_A 157 DLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 203 (203)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999995
No 3
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=100.00 E-value=2.2e-47 Score=320.50 Aligned_cols=184 Identities=17% Similarity=0.244 Sum_probs=149.6
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCCCCC-CCCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCCCCCC--CCC--
Q 028429 12 FAVVDSILLRSLRDHYEEVAKMTPPPKV-SPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGD--DDD-- 86 (209)
Q Consensus 12 ~~~~d~~Ll~~L~~Ei~~~~~~~~~~~~-~~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~~~~~--e~e-- 86 (209)
+++.+++|+++|++||+++++..+++.+ ..+.||+|.+. |++|+|+|+|++|+|+|+|++. +++|... +++
T Consensus 2 ~~~~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~v~~~---g~~v~L~r~~~~E~I~V~f~v~-~~~~~~~~~~~e~~ 77 (209)
T 1p32_A 2 HTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELN---GTEAKLVRKVAGEKITVTFNIN-NSIPPTFDGEEEPS 77 (209)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTSCCCCCTTCCEEEEE---TTEEEEEEEETTEEEEEEEECT-TCCC----------
T ss_pred CchHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcEEEEC---CCEEEEEEecCCcEEEEEEEcc-CCCCcccccccccc
Confidence 5788999999999999987775544433 35689999984 4899999999999999999965 3344211 111
Q ss_pred -------CCCCCCcceeEEEEEEcC-CCCceEEEEEeeeCCe-----------EEEeEEEeecCccccCcccCCCCcCCC
Q 028429 87 -------DDDDGINQLFLHVEMSKP-GQKNSLLFLCGLYPDA-----------LGIHSVSMRPNLESEGILVVPSQYTGP 147 (209)
Q Consensus 87 -------~d~e~~~~~~~~V~ItK~-~~~~~L~f~c~~~~~e-----------~~I~~v~~~~~~~~~~~~~~~~~Y~GP 147 (209)
++.+..++++|+|+|+|| +.+++|.|.|++++++ |.|++|+++++.. +.| ....|.|
T Consensus 78 ~~~~~~ee~~~~~~~~~~~V~I~K~~~~~~~L~f~C~~~~~e~~~~~~~~~~~~~I~~v~~~~~~e--~~~-~~~~Y~g- 153 (209)
T 1p32_A 78 QGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGE--SEW-KDTNYTL- 153 (209)
T ss_dssp -----------CCCCCCEEEEEEEGGGTTEEEEEEEECCCCC------TTCCSCEEEEEEEEETTC--SSC-CTTSCEE-
T ss_pred cccccccccccccccCcEEEEEEECCCCCCeEEEEEEecCcccccccccCCceEEEEEEEEecCcc--ccc-ccccccc-
Confidence 122345788999999998 3478999999998876 9999999997632 123 3468999
Q ss_pred CCCCccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028429 148 SFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGK 203 (209)
Q Consensus 148 ~F~~LDe~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~~~ 203 (209)
.|.+||++||++|++||++||||++||+||++||++|||+||++||++|++||+++
T Consensus 154 ~f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KE~~eYi~WL~~lk~Fv~~~ 209 (209)
T 1p32_A 154 NTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ 209 (209)
T ss_dssp ESTTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999863
No 4
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-44 Score=304.55 Aligned_cols=185 Identities=22% Similarity=0.405 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCC-------CCCCCEEEeCCCCCCce-EEEEeeCCeEEEEEEeec--CCCCCCCC-
Q 028429 15 VDSILLRSLRDHYEEVAKMTPPPKVS-------PPSSFTIVKGALDTHGP-VLKRMYGSEQISIYVTRL--GNIIRGGD- 83 (209)
Q Consensus 15 ~d~~Ll~~L~~Ei~~~~~~~~~~~~~-------~~~~F~i~~~~gd~~~v-~L~R~~~~E~I~V~~~~~--~~~~~~~~- 83 (209)
-...|+.+|++||+.+++.......| ..+||+|.+.||. +.| .|+|+||+|+|+|.|++. .++ |.++
T Consensus 10 ~~~~l~~~L~~Ei~~E~~~~~~e~~p~~~~~Fl~~~~f~i~d~~G~-~~V~llkr~~g~EkI~V~F~i~d~~~~-p~e~~ 87 (227)
T 3qv0_A 10 ETQRVGDILQSELKIEKETLPESTSLDSFNDFLNKYKFSLVETPGK-NEAEIVRRTESGETVHVFFDVAQIANL-PYNNA 87 (227)
T ss_dssp CHHHHHHHHHHHHHHHHC------CHHHHHHHHHHTTCEEECCTTC-SEEEEEEECTTSCEEEEEEEHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhccccccCchHHHHHHhcCCcEEEecCCC-ceEEEEEeecCCcEEEEEEEccccccC-Ccccc
Confidence 35689999999999876543332222 3379999999985 888 889999999999999852 232 2110
Q ss_pred --C---------CCCCCCCC--cceeEEEEEEcCCCC-ceEEEEEe--eeCCeEEEeEEEeecCccc------cCcccCC
Q 028429 84 --D---------DDDDDDGI--NQLFLHVEMSKPGQK-NSLLFLCG--LYPDALGIHSVSMRPNLES------EGILVVP 141 (209)
Q Consensus 84 --e---------~e~d~e~~--~~~~~~V~ItK~~~~-~~L~f~c~--~~~~e~~I~~v~~~~~~~~------~~~~~~~ 141 (209)
+ .+++.+.. ..++|+|+|+||+++ ++|.|+|+ +++|+|.|++|+|+++... ++.|.+.
T Consensus 88 ~~e~~~~~~~~~~eee~~~~~~~~~~~~V~ItK~~~~~~aL~~e~~~~~~eg~f~Id~V~~~~d~~~a~~~s~e~~~~r~ 167 (227)
T 3qv0_A 88 MDENTEQNEDGINEDDFDALSDNFANVNVVISKESASEPAVSFELLMNLQEGSFYVDSATPYPSVDAALNQSAEAEITRE 167 (227)
T ss_dssp -----------------------CEEEEEEEEC---CCCEEEEEEEEETTTTEEEEEEEEEESSHHHHHCCSHHHHHHHH
T ss_pred cccccccccccccccchhcccCCcceEEEEEEeCCCCCceEEEEEEeecCCCcEEEEEEEEecchHhhhccccccccccc
Confidence 0 01111111 358999999999643 89999999 8999999999999986421 2346677
Q ss_pred CCcCCCCCCCccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028429 142 SQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYIS 201 (209)
Q Consensus 142 ~~Y~GP~F~~LDe~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~ 201 (209)
..|.||.|++||++||++|++||++||||++||+||++||.+|||+||++||++|++||+
T Consensus 168 ~~Y~GP~f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fv~ 227 (227)
T 3qv0_A 168 LVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFFH 227 (227)
T ss_dssp HSCCCSCGGGSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCccccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999999999984
No 5
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=79.65 E-value=3.2 Score=23.66 Aligned_cols=25 Identities=4% Similarity=0.202 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 028429 171 ESLFPFLQAWLYVKDNRNLMHWFRQ 195 (209)
Q Consensus 171 ~~la~fl~~y~~~KEq~eYi~WL~~ 195 (209)
..|+.-...|+...-.+.|++||-+
T Consensus 4 gtFTsdySk~l~~~~ak~fv~wLl~ 28 (30)
T 1t5q_A 4 GTFISDYSIAMDKIHQQDFVNWLLA 28 (30)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHc
Confidence 4567777888889999999999976
No 6
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=77.05 E-value=2.6 Score=25.53 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028429 172 SLFPFLQAWLYVKDNRNLMHWFRQVG 197 (209)
Q Consensus 172 ~la~fl~~y~~~KEq~eYi~WL~~v~ 197 (209)
.|.+-+..|+..+--++|++||.+-|
T Consensus 5 tFTsdyS~~l~~~aak~fv~wL~~~k 30 (39)
T 1jrj_A 5 TFTSDLSKQMEEEAVRLFIEWLKNGG 30 (39)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45666778888888899999998643
No 7
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=75.69 E-value=2.1 Score=24.64 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028429 178 QAWLYVKDNRNLMHWFRQVG 197 (209)
Q Consensus 178 ~~y~~~KEq~eYi~WL~~v~ 197 (209)
..|+..+--++|++||.+-+
T Consensus 3 SkyLe~~aakdFv~WL~ngk 22 (31)
T 3c5t_B 3 SKQMEEEAVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 45677777799999998754
No 8
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=70.64 E-value=4.6 Score=22.85 Aligned_cols=24 Identities=8% Similarity=0.378 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028429 172 SLFPFLQAWLYVKDNRNLMHWFRQ 195 (209)
Q Consensus 172 ~la~fl~~y~~~KEq~eYi~WL~~ 195 (209)
.|..-+..|+...--++|++||.+
T Consensus 5 tFTsdysk~l~~~aak~fv~wL~~ 28 (29)
T 2g49_C 5 TFTSDYSKYLDSRRAQDFVQWLMN 28 (29)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhc
Confidence 345556667777778899999964
No 9
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=68.50 E-value=4 Score=23.37 Aligned_cols=23 Identities=9% Similarity=0.361 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028429 173 LFPFLQAWLYVKDNRNLMHWFRQ 195 (209)
Q Consensus 173 la~fl~~y~~~KEq~eYi~WL~~ 195 (209)
+..-+..|+..+--++|+.||.+
T Consensus 6 ftsD~s~~L~~~~ak~Fv~wL~~ 28 (31)
T 3iol_B 6 FTSDVSSYLEGQAAKEFIAWLVK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeHHHHHHHHHHHHHHHHHHHHc
Confidence 45556678888888999999964
No 10
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=68.23 E-value=3.7 Score=23.96 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028429 172 SLFPFLQAWLYVKDNRNLMHWFRQ 195 (209)
Q Consensus 172 ~la~fl~~y~~~KEq~eYi~WL~~ 195 (209)
.|.+=+..|+...--++|++||.+
T Consensus 5 tFTsd~s~~l~~~aak~fl~wL~~ 28 (33)
T 2l63_A 5 SFSDEMNTILDNLAARDFINWLIQ 28 (33)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHc
Confidence 455556677788888999999975
No 11
>3vcf_A Probable integrase; catalyzes site-specific integration, recombination; 2.70A {Sulfolobus virus 1} PDB: 4dks_A 3uxu_A
Probab=67.84 E-value=9 Score=30.19 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHHHcCCChhHHHHHHH---------------HHHHHHHHHHHHHHHH
Q 028429 152 LDERMRDALHSYIEERGVNESLFPFLQA---------------WLYVKDNRNLMHWFRQ 195 (209)
Q Consensus 152 LDe~Lq~~~~~YLeeRGId~~la~fl~~---------------y~~~KEq~eYi~WL~~ 195 (209)
..-.|..-+.+||.+.||+.++++||+- -...++-..|..||++
T Consensus 104 ~~~~iRk~~~t~m~~~gvp~~vi~fiqGR~~~~vl~~hYl~l~~~a~~~Y~k~~~~l~~ 162 (163)
T 3vcf_A 104 AIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLKG 162 (163)
T ss_dssp CTHHHHHHHHHHHHHTTCCHHHHHHHTTCCCSSSSCSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHcCCCccccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5668889999999999999999999963 2245556667778875
No 12
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=56.92 E-value=5.3 Score=21.59 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=11.2
Q ss_pred CccccCCCCCCCch
Q 028429 1 MIARRRSTTSGFAV 14 (209)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (209)
|-.+|||.++++++
T Consensus 1 mk~~rrs~~r~kga 14 (26)
T 1m06_J 1 MKKARRSPSRRKGA 14 (26)
T ss_dssp CCGGGSCCCCCSSS
T ss_pred CcccccCCCcCCce
Confidence 55689999998875
No 13
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=52.58 E-value=27 Score=19.47 Aligned_cols=24 Identities=0% Similarity=-0.168 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028429 172 SLFPFLQAWLYVKDNRNLMHWFRQ 195 (209)
Q Consensus 172 ~la~fl~~y~~~KEq~eYi~WL~~ 195 (209)
-|..-+..|....-=+.|+.||.+
T Consensus 5 ~FTsdysk~l~~~~ak~fl~~l~~ 28 (29)
T 2rrh_A 5 VFTDNYTRLRKQMAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhc
Confidence 345555556666666889999864
No 14
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=50.42 E-value=10 Score=23.23 Aligned_cols=21 Identities=5% Similarity=0.205 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028429 177 LQAWLYVKDNRNLMHWFRQVG 197 (209)
Q Consensus 177 l~~y~~~KEq~eYi~WL~~v~ 197 (209)
+..|+..+-.++|++||-+-+
T Consensus 10 ySk~Ld~~~akdFv~WL~~~k 30 (42)
T 2b4n_A 10 YSIAMDKIHQQDFVNWLLAQK 30 (42)
T ss_dssp CCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 345677888899999998755
No 15
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=49.43 E-value=14 Score=26.21 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028429 159 ALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQV 196 (209)
Q Consensus 159 ~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v 196 (209)
.+-.=|+++||+.--.-.=.-++..|.+..+..||+..
T Consensus 29 ~~~~~L~~~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~ 66 (89)
T 1ci4_A 29 VLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDT 66 (89)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455677999985332222235678889999999976
No 16
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=42.18 E-value=84 Score=23.54 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=33.6
Q ss_pred CceEEEEEeeeCCeEEEeEEEeecCccccCcccCCCCcCCCCCCCccHHHHHHHHHHHHHcCCChh
Q 028429 107 KNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 107 ~~~L~f~c~~~~~e~~I~~v~~~~~~~~~~~~~~~~~Y~GP~F~~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
.=+|...|.-..+....+.+-+... - ..|++++.+.|.++|+..|++.+
T Consensus 105 ~yAiv~~~~~~~~~~~~~~~~ilsR--------------~---~~~~~~~~~~~~~~~~~~G~~~~ 153 (174)
T 2hzq_A 105 NYALVYSCTSISQSFHVDFAWILAR--------------N---VALPPETVDSLKNILTSNNIDVK 153 (174)
T ss_dssp SEEEEEEEEESSTTEEEEEEEEEES--------------S---SCCCHHHHHHHHHHHHHTTCCCT
T ss_pred CEEEEEecccCCCcccceEEEEEEC--------------C---CCCCHHHHHHHHHHHHHcCCCHH
Confidence 3466666765544455555555432 0 24889999999999999999865
No 17
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=41.44 E-value=57 Score=19.62 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=24.2
Q ss_pred CccHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 028429 151 DLDERMRDALHSYIEERGVNESLFPFLQAWLY 182 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~la~fl~~y~~ 182 (209)
.||++|...|..|-+..|+ +..++|...+.
T Consensus 15 rl~~el~~~l~~~a~~~g~--s~s~~ir~ai~ 44 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNL--TLSDVCRLAIK 44 (55)
T ss_dssp EECHHHHHHHHHHHHHHTC--CHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 4899999999999999999 56666665543
No 18
>2zop_A Putative uncharacterized protein TTHB164; all alpha proteins, plasmid, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=40.18 E-value=38 Score=24.70 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHH-----H-HHHHHHHHHHHHHHHHH
Q 028429 154 ERMRDALHSYIEERGVNESLFPFLQA-----W-LYVKDNRNLMHWFRQVG 197 (209)
Q Consensus 154 e~Lq~~~~~YLeeRGId~~la~fl~~-----y-~~~KEq~eYi~WL~~v~ 197 (209)
..|...|..||..++ .++|.+.|.. | ....|==+|..||++..
T Consensus 60 ~~l~~~l~~wl~~~~-~~~l~~~l~~~d~~~Y~~~T~e~La~~~WlKRfA 108 (114)
T 2zop_A 60 KALGNDLAQVLGYRD-LRELAEAAREAELLQYLRLTREVLAAAEWFKRFA 108 (114)
T ss_dssp HHHHHHHHHHTTCSS-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888873 4455544432 2 22344455667887754
No 19
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=37.59 E-value=31 Score=23.81 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.9
Q ss_pred CCCCCCCccHHHHHHHHHHHHHcC
Q 028429 145 TGPSFQDLDERMRDALHSYIEERG 168 (209)
Q Consensus 145 ~GP~F~~LDe~Lq~~~~~YLeeRG 168 (209)
.|-+|..||+.+-.--.+.|+.||
T Consensus 40 ~~~ef~gmd~~~L~kaL~~L~k~g 63 (79)
T 3htu_A 40 EDEEFHGLDEATLLRALQALQQEH 63 (79)
T ss_dssp TTSTTTTCCHHHHHHHHHHHHHTT
T ss_pred CCCcccCCCHHHHHHHHHHHHHcC
Confidence 577899999998877778999998
No 20
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=33.40 E-value=1.3e+02 Score=21.57 Aligned_cols=22 Identities=9% Similarity=0.323 Sum_probs=20.2
Q ss_pred CccHHHHHHHHHHHHHcCCChh
Q 028429 151 DLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
.|+++..+.|.++++..|++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~G~~~~ 149 (161)
T 2xst_A 128 DVSPQALKSFQDFYPTLGLPKD 149 (161)
T ss_dssp SCCHHHHHHHHHHGGGGTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5889999999999999999876
No 21
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=32.04 E-value=15 Score=19.69 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=9.3
Q ss_pred cccCCCCCCCch
Q 028429 3 ARRRSTTSGFAV 14 (209)
Q Consensus 3 ~~~~~~~~~~~~ 14 (209)
.+|||.++++++
T Consensus 4 s~rrs~~r~kga 15 (26)
T 1gff_3 4 SIRRSGGKSKGA 15 (26)
T ss_pred ccccCCCCCCce
Confidence 478998888764
No 22
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=29.96 E-value=77 Score=18.87 Aligned_cols=24 Identities=0% Similarity=-0.173 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028429 172 SLFPFLQAWLYVKDNRNLMHWFRQ 195 (209)
Q Consensus 172 ~la~fl~~y~~~KEq~eYi~WL~~ 195 (209)
-|..-+..|....--+.|+.||-+
T Consensus 5 ~FTs~yskyl~~~~ak~fl~~l~~ 28 (39)
T 2d2p_A 5 IFTDSYSRYRKQMAVKKYLAAVLG 28 (39)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555566666789999864
No 23
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=28.73 E-value=43 Score=24.43 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=21.1
Q ss_pred CCccHHHHHHHHHHHHHcCCChh
Q 028429 150 QDLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 150 ~~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
.+|++++.+.|.+++.+.||+.+
T Consensus 116 ~~l~~e~~~~f~~~~~~~G~~~~ 138 (151)
T 1e5p_A 116 NALTPEENEILVQFAHEKKIPVE 138 (151)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 36899999999999999999987
No 24
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=28.32 E-value=59 Score=21.43 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHHHHcCCCh
Q 028429 152 LDERMRDALHSYIEERGVNE 171 (209)
Q Consensus 152 LDe~Lq~~~~~YLeeRGId~ 171 (209)
|+.+--+.++.+|++.||+-
T Consensus 40 ld~e~id~i~~~L~~~gI~V 59 (72)
T 2k6x_A 40 FDTNLIERIHEELEKHGINI 59 (72)
T ss_dssp CCHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHCCCcc
Confidence 89999999999999999953
No 25
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A {Periplaneta americana}
Probab=27.76 E-value=1.9e+02 Score=21.58 Aligned_cols=22 Identities=5% Similarity=0.215 Sum_probs=20.3
Q ss_pred CccHHHHHHHHHHHHHcCCChh
Q 028429 151 DLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
.|++++.+.|.+.+++.|++.+
T Consensus 129 ~l~~~~~~~~~~~~~~~G~~~~ 150 (163)
T 3ebw_A 129 SFDDATKAKVNEVLAPYNLSLD 150 (163)
T ss_dssp SCCHHHHHHHHHHHGGGTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5999999999999999999975
No 26
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore binding., lipid binding protein; HET: BLV; 2.60A {Manduca sexta} SCOP: b.60.1.1
Probab=27.70 E-value=1.5e+02 Score=22.47 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=19.7
Q ss_pred CccHHHHHHHHHHHH--HcCCChh
Q 028429 151 DLDERMRDALHSYIE--ERGVNES 172 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLe--eRGId~~ 172 (209)
.|++++.+.|.++|+ ..|++.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~G~d~~ 163 (189)
T 1z24_A 140 VLEGNTKEVVDNVLKTFSHLIDAS 163 (189)
T ss_dssp SCCTHHHHHHHHHHHTTTTTCCGG
T ss_pred CCCHHHHHHHHHHHhhhhcCCCHH
Confidence 478899999999999 9999865
No 27
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=27.28 E-value=22 Score=19.26 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=8.7
Q ss_pred HHHHHHhhcCCC
Q 028429 193 FRQVGQYISGKN 204 (209)
Q Consensus 193 L~~v~~Fv~~~~ 204 (209)
|+.|++||.+++
T Consensus 13 ~~~Vk~fvR~~g 24 (25)
T 3ewt_E 13 LSQVKGFVRKNG 24 (26)
T ss_pred HHHHHHHHHHcC
Confidence 467888887765
No 28
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=26.97 E-value=36 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.9
Q ss_pred CCCCCCccHHHHHHHHHHHHHcCCCh
Q 028429 146 GPSFQDLDERMRDALHSYIEERGVNE 171 (209)
Q Consensus 146 GP~F~~LDe~Lq~~~~~YLeeRGId~ 171 (209)
||.....-+.+.+.|.+|++.||..-
T Consensus 1 ~p~~~r~~~~F~~~L~~F~~~~g~~l 26 (96)
T 2jxj_A 1 GPLGSRVRLDFLDQLAKFWELQGSTL 26 (96)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTCCC
T ss_pred CchhhHHHHHHHHHHHHHHHHcCCCC
Confidence 67777788889999999999999653
No 29
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin, ligand binding protein; 1.80A {Pieris brassicae} SCOP: b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A*
Probab=25.75 E-value=1.3e+02 Score=22.71 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=31.6
Q ss_pred ceEEEEEe-eeCCeEEEeEEEeecCccccCcccCCCCcCCCCCCCccHHHHHHHHHHHH-HcCCChh
Q 028429 108 NSLLFLCG-LYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIE-ERGVNES 172 (209)
Q Consensus 108 ~~L~f~c~-~~~~e~~I~~v~~~~~~~~~~~~~~~~~Y~GP~F~~LDe~Lq~~~~~YLe-eRGId~~ 172 (209)
=+|.+.|. +..+....+.+-+... -| .|++++.+.|.++|+ ..|++.+
T Consensus 109 Yaivy~C~~~~~~~~~~~~~wiLsR--------------~~---~~~~~~~~~~~~~~~~~~G~~~~ 158 (184)
T 1kxo_A 109 YIIGYFCSYDEDKKGHMDLVWVLSR--------------SM---VLTGEAKTAVENYLIGSPVVDSQ 158 (184)
T ss_dssp EEEEEEEECC--CSEEEEEEEEEES--------------SS---SCCHHHHHHHHHHTTSCSSCCGG
T ss_pred EEEEEEEeeeeccCCCccEEEEEEc--------------CC---CCCHHHHHHHHHHHHHhcCCCHH
Confidence 46777776 5434444444444321 12 488999999999999 9999865
No 30
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=25.51 E-value=50 Score=24.26 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.7
Q ss_pred CccHHHHHHHHHHHHHcCCChh
Q 028429 151 DLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
+|++++.+.|.+++++.||+.+
T Consensus 122 ~l~~e~~~~f~~~~~~~G~~~~ 143 (156)
T 1bj7_A 122 SFTPEELEKYQQLNSERGVPNE 143 (156)
T ss_dssp CCCHHHHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5899999999999999999987
No 31
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=30.98 E-value=15 Score=24.39 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCChhHH
Q 028429 154 ERMRDALHSYIEERGVNESLF 174 (209)
Q Consensus 154 e~Lq~~~~~YLeeRGId~~la 174 (209)
..+-.+|.+||+.+||.-.+-
T Consensus 10 ~~~Aq~f~dyL~s~gI~~~v~ 30 (69)
T 2lep_A 10 PRVAQAFVDYMATQGVILTIQ 30 (69)
Confidence 345678999999999998874
No 32
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=24.45 E-value=51 Score=23.65 Aligned_cols=25 Identities=20% Similarity=0.249 Sum_probs=22.9
Q ss_pred CCCCccHHHHHHHHHHHHHcCCChh
Q 028429 148 SFQDLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 148 ~F~~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
-|++|.++-|+.+...|+.-||+++
T Consensus 80 G~~~L~~eDq~~i~~~~e~g~~~p~ 104 (106)
T 2dmj_A 80 GFSELRWDDQQKVKKTAEAGGSGPS 104 (106)
T ss_dssp TTTTSCHHHHHHHHHHHHHCSSCCC
T ss_pred ChHHCCHHHHHHHHHHHHhCCCCCC
Confidence 4999999999999999999999875
No 33
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=24.44 E-value=51 Score=24.50 Aligned_cols=22 Identities=9% Similarity=0.216 Sum_probs=20.7
Q ss_pred CccHHHHHHHHHHHHHcCCChh
Q 028429 151 DLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
+|++++.+.|.+++.+.||+.+
T Consensus 119 ~~~~e~~~~f~~~~~~~G~~~~ 140 (160)
T 3sao_A 119 EVSPTAMAIFRKLARERNYTDE 140 (160)
T ss_dssp SCCHHHHHHHHHHHHTTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5999999999999999999987
No 34
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=23.37 E-value=62 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCccHHHHHHHHHHHHHcCCChh
Q 028429 150 QDLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 150 ~~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
.+|++++.+.|.+++++.||+.+
T Consensus 125 ~~~~~~~~~~f~~~~~~~G~~~~ 147 (162)
T 3o22_A 125 QTPRAELKEKFTAFCKAQGFTED 147 (162)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 36999999999999999999976
No 35
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1
Probab=23.14 E-value=2.2e+02 Score=20.91 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.3
Q ss_pred CccHHHHHHHHHHHHHcCCChh
Q 028429 151 DLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
.|++++.+.|.+++++.|++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~G~~~~ 159 (174)
T 1gka_B 138 QTSGPAVEKTAAVFNKNGVEFS 159 (174)
T ss_dssp CSSSHHHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4778899999999999999865
No 36
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=22.97 E-value=64 Score=23.58 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=21.0
Q ss_pred CccHHHHHHHHHHHHHcCCChhH
Q 028429 151 DLDERMRDALHSYIEERGVNESL 173 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~l 173 (209)
+|++++.+.|.+++...||+.+-
T Consensus 123 ~~~~e~~~~f~~~~~~~G~~~~~ 145 (157)
T 1dzk_A 123 DIEDQDLEKFKEVTRENGIPEEN 145 (157)
T ss_dssp CCCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 58999999999999999999873
No 37
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C
Probab=22.57 E-value=64 Score=24.47 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=20.6
Q ss_pred CccHHHHHHHHHHHHHcCCChh
Q 028429 151 DLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
+|++++.+.|.+++++.||+.+
T Consensus 136 ~l~~e~~~~f~~~~~~~G~~~~ 157 (182)
T 1lf7_A 136 PVSDSVLSGFEQRVQEAHLTED 157 (182)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 6899999999999999999976
No 38
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=22.19 E-value=68 Score=23.62 Aligned_cols=22 Identities=9% Similarity=0.453 Sum_probs=20.7
Q ss_pred CccHHHHHHHHHHHHHcCCChh
Q 028429 151 DLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
+|++++.+.|.+++++.||+.+
T Consensus 124 ~~~~e~~~~f~~~~~~~G~~~~ 145 (160)
T 2hlv_A 124 NVEDEDLEKFWKLTEDKGIDKK 145 (160)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5899999999999999999987
No 39
>3zr8_X AVR3A11; protein binding, plant pathogen interactions; HET: PGE; 0.90A {Phytophthora capsici}
Probab=21.33 E-value=74 Score=21.09 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=19.9
Q ss_pred HHHHHHHHHH------HHHHHHhhcCCCCCC
Q 028429 183 VKDNRNLMHW------FRQVGQYISGKNHAK 207 (209)
Q Consensus 183 ~KEq~eYi~W------L~~v~~Fv~~~~~~~ 207 (209)
.+++.-|..| |.+|..|++.+.+.|
T Consensus 20 ~~a~~vY~kW~~kgytl~qI~~~Lk~k~k~K 50 (65)
T 3zr8_X 20 SKADDVYQKWADKGYTLTQLSDFLKSKTRGK 50 (65)
T ss_dssp GGHHHHHHHHHHHTCCHHHHGGGCCCSSTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhHHhhhh
Confidence 5789999999 677999999665543
No 40
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.99 E-value=80 Score=24.55 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 028429 158 DALHSYIEERGVNESLFPFLQAWLYVKDNR 187 (209)
Q Consensus 158 ~~~~~YLeeRGId~~la~fl~~y~~~KEq~ 187 (209)
..+..||..+||-..+|.|=..|+..-|..
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~ 109 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEAR 109 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHc
Confidence 357899999999999999999998877654
No 41
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=20.50 E-value=76 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCccHHHHHHHHHHHHHcCCChhH
Q 028429 150 QDLDERMRDALHSYIEERGVNESL 173 (209)
Q Consensus 150 ~~LDe~Lq~~~~~YLeeRGId~~l 173 (209)
.+|++++.+.|.++..++||.++-
T Consensus 122 ~~~s~e~~e~F~~~~~~~Gl~~en 145 (157)
T 3fiq_A 122 EDLNKAQKQELRKLAEEYNIPNEN 145 (157)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHH
Confidence 469999999999999999999873
No 42
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=20.47 E-value=78 Score=23.09 Aligned_cols=24 Identities=13% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCccHHHHHHHHHHHHHcCCChhH
Q 028429 150 QDLDERMRDALHSYIEERGVNESL 173 (209)
Q Consensus 150 ~~LDe~Lq~~~~~YLeeRGId~~l 173 (209)
..|++++.+.|.++++..|++.+-
T Consensus 121 ~~~~~~~~~~f~~~~~~~G~~~~~ 144 (159)
T 1ew3_A 121 PDVSPEIKEEFVKIVQKRGIVKEN 144 (159)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHH
Confidence 368999999999999999999863
No 43
>2ouf_A Hypothetical protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Helicobacter pylori} SCOP: a.292.1.1 PDB: 2bo3_A 3mli_A
Probab=20.33 E-value=93 Score=22.14 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCChh----HHHHH-----HHHHHHHHHHHHHHHHHHH
Q 028429 157 RDALHSYIEERGVNES----LFPFL-----QAWLYVKDNRNLMHWFRQV 196 (209)
Q Consensus 157 q~~~~~YLeeRGId~~----la~fl-----~~y~~~KEq~eYi~WL~~v 196 (209)
+-++...|+++|++.. +.+|+ .+-...+.+..||....++
T Consensus 41 laamE~llEe~G~~e~~e~~ik~~~~~~~~~d~i~~~~~dL~Ie~mg~I 89 (94)
T 2ouf_A 41 LALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANI 89 (94)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHhhhhHHHHHHHccchHHHHHHHH
Confidence 4566788999999943 33333 3345667777888776654
No 44
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=20.13 E-value=76 Score=24.37 Aligned_cols=23 Identities=9% Similarity=0.488 Sum_probs=20.9
Q ss_pred CCccHHHHHHHHHHHHHcCCChh
Q 028429 150 QDLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 150 ~~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
.+|++++.+.|.+++++.||+.+
T Consensus 144 ~~l~~e~~~~f~~~~~~~G~~~~ 166 (190)
T 3s26_A 144 KELSPELKERFTRFAKSLGLKDD 166 (190)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 35999999999999999999986
No 45
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A 1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A
Probab=20.06 E-value=2.8e+02 Score=20.77 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=19.8
Q ss_pred CccHHHHHHHHHHHHHcCCChh
Q 028429 151 DLDERMRDALHSYIEERGVNES 172 (209)
Q Consensus 151 ~LDe~Lq~~~~~YLeeRGId~~ 172 (209)
.|++++.+.|.++|+..|++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~G~d~~ 162 (181)
T 1i4u_A 141 NLADQYVKKCEAAFKNINVDTT 162 (181)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5889999999999999999865
Done!