Query 028431
Match_columns 209
No_of_seqs 111 out of 480
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:55:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 1.8E-41 6E-46 281.2 20.6 190 3-195 21-215 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.0 6.5E-05 2.2E-09 61.3 11.5 110 17-131 60-174 (217)
3 2fim_A Tubby related protein 1 65.7 57 0.002 27.1 11.5 100 68-171 36-159 (276)
4 3c5n_A Tubby-related protein 1 57.5 76 0.0026 25.8 11.4 96 71-171 15-135 (246)
5 3u88_M Histone-lysine N-methyl 35.4 14 0.0005 23.9 1.3 26 169-194 28-53 (75)
6 2v2f_A Penicillin binding prot 32.0 33 0.0011 17.5 2.2 15 61-75 6-20 (26)
7 4he6_A Peptidase family U32; u 26.0 84 0.0029 20.9 4.0 30 43-75 20-50 (89)
8 3lhn_A Lipoprotein; structural 25.8 1.9E+02 0.0064 20.9 6.2 7 45-51 69-75 (126)
9 2h1z_A Hybrid atracotoxin; bet 23.5 56 0.0019 18.7 2.2 12 40-51 28-39 (39)
10 3oe3_A Putative periplasmic pr 19.2 1.5E+02 0.0052 20.5 4.3 37 30-74 48-84 (98)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=1.8e-41 Score=281.17 Aligned_cols=190 Identities=28% Similarity=0.548 Sum_probs=146.1
Q ss_pred CCceeeEeccCccCCCceEEEEEEEeeeEeCCCeEEEeCCCCEEEEEeccCCCCCCCCeEEEEcCCCCeEEEEEecCCCC
Q 028431 3 ADQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKRPSL 82 (209)
Q Consensus 3 ~~~~~~~v~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~~L~~i~~k~~s~ 82 (209)
+++..++|+|+||++++++|+||||.+.+++++|+|+|++|+++|+|++ +.++++.++.|+|++|++|++|++|.+++
T Consensus 21 ~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~--~~~~~~~~~~l~D~~G~~l~~i~rk~~~~ 98 (217)
T 1zxu_A 21 PQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKE--PVFGLHDKRVLLDGSGTPVVTLREKMVSM 98 (217)
T ss_dssp ---CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEEC--SSTTCCSEEEEECTTSCEEEEEEC-----
T ss_pred CCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEc--cccCCCCEEEEECCCCCEEEEEEcccccc
Confidence 4455667889999999999999999777788899999999999999999 45899999999999999999999999999
Q ss_pred CcceEEEEcCCCCCCcceEEEEeeccc-CcceEEEEeeCC---CCceEEEEeeecCceEEEEeCC-CceEEEEEeeeccc
Q 028431 83 HHRWEGYSGERTDGQKPIFSVRRSSII-GRSSVTVEMYEN---PGEEYQIEGNFWQRSCTIFNAM-KESVAEIRRKVDAS 157 (209)
Q Consensus 83 ~~~w~v~~~~~~~~~~~lf~ik~~~~~-~~~~~~v~~~~~---~~~~~~v~G~~~~~~~~I~~~~-g~~VA~V~rk~~~~ 157 (209)
+++|++|.++..++.+++|+||+++.+ .+++++|++.++ +...|+|+|+|++++|+|++++ |++||+|+||| ++
T Consensus 99 ~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~-~~ 177 (217)
T 1zxu_A 99 HDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKH-TV 177 (217)
T ss_dssp -CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC----
T ss_pred CcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeee-ec
Confidence 999999998765444689999998433 367899987753 2468999999999999999996 69999999997 46
Q ss_pred cceEEeeeeEEEEEeCCCCHHHHHHHHHHHhhhhcCCC
Q 028431 158 TQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGDNY 195 (209)
Q Consensus 158 ~~~~~~~dtY~v~V~pgvD~ali~alvv~lD~i~~~~~ 195 (209)
++++.++|+|.|+|+||+|.+|++|+|++||+++.++.
T Consensus 178 ~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~ 215 (217)
T 1zxu_A 178 QSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDR 215 (217)
T ss_dssp -----CBCSEEEEECTTSBHHHHHHHHHHHHHHHC---
T ss_pred cccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhcc
Confidence 77888999999999999999999999999999998764
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.00 E-value=6.5e-05 Score=61.25 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=70.4
Q ss_pred CCceEEEEEEEeeeEeCCCeEEEeCCCCEEEEEeccCCCCCCCCeEEEEcCCCC----eEEEEEecC-CCCCcceEEEEc
Q 028431 17 KQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGK----CLLTVRRKR-PSLHHRWEGYSG 91 (209)
Q Consensus 17 ~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~----~L~~i~~k~-~s~~~~w~v~~~ 91 (209)
.....+.|..+ ....++.+.|+|.+|++++++.. +.+++..+..+.++.+. +|++|+++. +++++.|+|+.+
T Consensus 60 ~G~~vf~V~~~-~~~~~~~~~l~D~~G~~l~~i~r--k~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~ 136 (217)
T 1zxu_A 60 NGNLLFKVKEP-VFGLHDKRVLLDGSGTPVVTLRE--KMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLG 136 (217)
T ss_dssp TSCEEEEEECS-STTCCSEEEEECTTSCEEEEEEC--------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEET
T ss_pred CCCEEEEEEcc-ccCCCCEEEEECCCCCEEEEEEc--cccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEEC
Confidence 46678888887 44567889999999999999998 55789999999998765 799999873 568899999987
Q ss_pred CCCCCCcceEEEEeecccCcceEEEEeeCCCCceEEEEee
Q 028431 92 ERTDGQKPIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGN 131 (209)
Q Consensus 92 ~~~~~~~~lf~ik~~~~~~~~~~~v~~~~~~~~~~~v~G~ 131 (209)
+....+.+.++|+-.+ + ..+++|.-.+++..--+|+-.
T Consensus 137 ~~~~~~~~~~~I~G~~-~-~~~f~I~~~~~~~~Va~I~kk 174 (217)
T 1zxu_A 137 HNKDEKRCDFRVKGSW-L-ERSCVVYAGESDAIVAQMHRK 174 (217)
T ss_dssp TCCC-CCCSEEEESCT-T-TTCCEEEETTTCCEEEEEEEC
T ss_pred CCCCCCceEEEEEEeE-e-CCEEEEEECCCCEEEEEEEee
Confidence 5433334567776542 2 346777544322334455544
No 3
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=65.70 E-value=57 Score=27.06 Aligned_cols=100 Identities=6% Similarity=0.050 Sum_probs=55.8
Q ss_pred CCCeEEEEEecC--C--CCCcceEEEEcCCCCCCcceEEEEeecccCcceEEEEeeCC------CCceEEEEeeecCceE
Q 028431 68 HGKCLLTVRRKR--P--SLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYEN------PGEEYQIEGNFWQRSC 137 (209)
Q Consensus 68 ~G~~L~~i~~k~--~--s~~~~w~v~~~~~~~~~~~lf~ik~~~~~~~~~~~v~~~~~------~~~~~~v~G~~~~~~~ 137 (209)
.+-.-+.|++.. + .+.++|..|..+ +..+.|+..||+..-..+.+-|++... +..-=+|+.||++..|
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l~~--~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF 113 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHLDT--EKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRF 113 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEECS--SSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEEEEECSSSSEE
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEEeC--CCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEEEEEccCCCEE
Confidence 355667775532 2 355889888853 223456666776433335777776521 1112467889999999
Q ss_pred EEEeCC--------------CceEEEEEeeeccccceEEeeeeEEEEE
Q 028431 138 TIFNAM--------------KESVAEIRRKVDASTQVLLAKDVFLLSV 171 (209)
Q Consensus 138 ~I~~~~--------------g~~VA~V~rk~~~~~~~~~~~dtY~v~V 171 (209)
+||+.. .+.+|.|..+..-++ ..|--...+.+
T Consensus 114 ~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~nvlg--~~gPR~m~v~i 159 (276)
T 2fim_A 114 TVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLG--FRGPRRMTVII 159 (276)
T ss_dssp EEECSSBCGGGCTTSCGGGBCCEEEEEEEC-----------CCEEEEE
T ss_pred EEECCCCCcccccCcccccccEEEEEEEEEecccC--CCCCeEEEEEe
Confidence 999872 178888887642110 12334555555
No 4
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=57.45 E-value=76 Score=25.79 Aligned_cols=96 Identities=6% Similarity=0.051 Sum_probs=55.3
Q ss_pred eEEEEEecC--C--CCCcceEEEEcCCCCCCcceEEEEeecccCcceEEEEeeCC------CCceEEEEeeecCceEEEE
Q 028431 71 CLLTVRRKR--P--SLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYEN------PGEEYQIEGNFWQRSCTIF 140 (209)
Q Consensus 71 ~L~~i~~k~--~--s~~~~w~v~~~~~~~~~~~lf~ik~~~~~~~~~~~v~~~~~------~~~~~~v~G~~~~~~~~I~ 140 (209)
.-+.|++.. + .+.++|..|..++ ....|...||+..-..+.+.|++... +..-=+|+.|+++..|+||
T Consensus 15 ~qC~I~R~k~g~~~~~yp~y~l~~~~~--~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iy 92 (246)
T 3c5n_A 15 VRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVF 92 (246)
T ss_dssp EEEEEEECC------CCCEEEEEESSS--SCCEEEEEEECTTCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEE
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEeCC--CcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEE
Confidence 445666532 2 3557888887532 22345666766433335777776532 1112467889999999999
Q ss_pred eCCC---------------ceEEEEEeeeccccceEEeeeeEEEEE
Q 028431 141 NAMK---------------ESVAEIRRKVDASTQVLLAKDVFLLSV 171 (209)
Q Consensus 141 ~~~g---------------~~VA~V~rk~~~~~~~~~~~dtY~v~V 171 (209)
+. | +.+|.|..+..-++ ..|--...+.+
T Consensus 93 D~-g~~p~~~~s~~~~~~r~el~~v~Ye~n~l~--~~gPR~m~v~i 135 (246)
T 3c5n_A 93 DN-GQNPQRGYSTNVASLRQELAAVIYETNVLG--FRGPRRMTVII 135 (246)
T ss_dssp CS-CBCGGGCTTSCGGGBCCEEEEEEECCCCCC-----CCCEEEEE
T ss_pred CC-CCCcccccCcccccccEEEEEEEEEecccC--CCCCeEEEEEe
Confidence 87 3 78999987752111 12344566655
No 5
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=35.38 E-value=14 Score=23.90 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.0
Q ss_pred EEEeCCCCHHHHHHHHHHHhhhhcCC
Q 028431 169 LSVKPGFDGAFAMGLVLVLDQINGDN 194 (209)
Q Consensus 169 v~V~pgvD~ali~alvv~lD~i~~~~ 194 (209)
|-|.||.|.+|.+..+|--...+-.+
T Consensus 28 lgvgpGFDAALqvSa~Ig~nl~kfrd 53 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIGTNLRRFRA 53 (75)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHHHHHHHHHH
Confidence 56899999999887777655544433
No 6
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=32.04 E-value=33 Score=17.49 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=10.7
Q ss_pred eEEEEcCCCCeEEEE
Q 028431 61 EHVLMDAHGKCLLTV 75 (209)
Q Consensus 61 k~~l~D~~G~~L~~i 75 (209)
.-.|+|.+|+.+.++
T Consensus 6 ss~IYD~~g~~i~~l 20 (26)
T 2v2f_A 6 SSKIYDNKNQLIADL 20 (26)
T ss_pred CCEEEeCCCCEeeec
Confidence 356778888777766
No 7
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=26.00 E-value=84 Score=20.87 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=20.4
Q ss_pred CCEEEEEeccCCCCCCCCeEEEEcCCC-CeEEEE
Q 028431 43 GELVFRVDSYGPDTRDKDEHVLMDAHG-KCLLTV 75 (209)
Q Consensus 43 G~~vf~V~g~~~~~s~~~k~~l~D~~G-~~L~~i 75 (209)
|.....+.+ + |+.++.+.++-+.| +.-+++
T Consensus 20 g~~~ie~rN--~-f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 20 GIATVQQRN--H-FRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp TEEEEEESS--C-BCTTCEEEEESTTSCCEEEEC
T ss_pred CEEEEEEcC--C-cCCCCEEEEEcCCCCcEEEEe
Confidence 656666666 4 67888888888888 444444
No 8
>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis}
Probab=25.81 E-value=1.9e+02 Score=20.90 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=3.4
Q ss_pred EEEEEec
Q 028431 45 LVFRVDS 51 (209)
Q Consensus 45 ~vf~V~g 51 (209)
..|...|
T Consensus 69 ~~~~~~G 75 (126)
T 3lhn_A 69 SIFKVAG 75 (126)
T ss_dssp EEEEEEE
T ss_pred CCeEeee
Confidence 3455555
No 9
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=23.54 E-value=56 Score=18.71 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=10.0
Q ss_pred eCCCCEEEEEec
Q 028431 40 NCRGELVFRVDS 51 (209)
Q Consensus 40 D~~G~~vf~V~g 51 (209)
++||+.|++.++
T Consensus 28 NeNGntV~rC~~ 39 (39)
T 2h1z_A 28 NENGHTVYYCRA 39 (39)
T ss_dssp CSSCCEEEEEEC
T ss_pred ccCCCEEEeecC
Confidence 589999999863
No 10
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=19.21 E-value=1.5e+02 Score=20.54 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=18.7
Q ss_pred eEeCCCeEEEeCCCCEEEEEeccCCCCCCCCeEEEEcCCCCeEEE
Q 028431 30 FFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLT 74 (209)
Q Consensus 30 ~~~~~~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~~L~~ 74 (209)
+-||-.|.--|.+|.-.+.-+| +...|.|..|+|++.
T Consensus 48 SASGarY~~~~~~~~y~lwtKG--------~eA~L~~~~g~~i~~ 84 (98)
T 3oe3_A 48 MASGANYEAIDKNYTYKLYTKG--------KTAELVEGDDKPVLS 84 (98)
T ss_dssp C--CEEEEESSTTCCCEEEEET--------TEEEEEETTTEEEEE
T ss_pred ecCcceEEccCCCCcEEEEEeC--------CcEEEEECCCCEEEc
Confidence 3445445444445555555554 346666666666653
Done!