BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028432
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 78 PEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPV 137
P ++ + SG++ +++ EG G EA G V ++Y ++G S+ D+ + P
Sbjct: 2 PGSMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR----NDPF 57
Query: 138 ILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHAN 196
L +IKG E + GMKVGG RR IPP +GY IP N
Sbjct: 58 AFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIP------------PN 105
Query: 197 EPLIFEVQLLKV 208
L+FEV+LL V
Sbjct: 106 ATLVFEVELLDV 117
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 88 SGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
SG++ +++ EG G EA G V ++Y ++G S+ D+ + P L +I
Sbjct: 8 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR----NDPFAFVLGGGHVI 63
Query: 148 KGLKEVLVGMKVGGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206
KG E + GMKVGG RR IPP +GY IP N L+FEV+LL
Sbjct: 64 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIP------------PNATLVFEVELL 111
Query: 207 KV 208
V
Sbjct: 112 DV 113
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 88 SGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
SG++ +++ EG G EA G V ++Y ++G S+ D+ + P L +I
Sbjct: 28 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR----NDPFAFVLGGGMVI 83
Query: 148 KGLKEVLVGMKVGGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206
KG E + GMKVGG RR IPP +GY IP N L+FEV+LL
Sbjct: 84 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIP------------PNATLVFEVELL 131
Query: 207 KV 208
V
Sbjct: 132 DV 133
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 88 SGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
SG++ +++ EG G EA G V ++Y ++G S+ D+ + P L +I
Sbjct: 104 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR----NDPFAFVLGGGMVI 159
Query: 148 KGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSL-LSHANEPLIFEVQLL 206
KG E + GMKVGG RR IPP +GY G R + + N L+FEV+LL
Sbjct: 160 KGWDEGVQGMKVGGVRRLTIPPQLGY------------GARGAAGVIPPNATLVFEVELL 207
Query: 207 KV 208
V
Sbjct: 208 DV 209
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 88 SGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
SG++ +++ EG G EA G V ++Y ++G S+ D+ + P L +I
Sbjct: 104 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR----NDPFAFVLGGGMVI 159
Query: 148 KGLKEVLVGMKVGGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206
KG E + GMKVGG RR IPP +GY IP N L+FEV+LL
Sbjct: 160 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIP------------PNATLVFEVELL 207
Query: 207 KV 208
V
Sbjct: 208 DV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 88 SGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
SG++ +++ EG G EA G V ++Y ++G S+ D+ + P L +I
Sbjct: 104 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR----NDPFAFVLGGGMVI 159
Query: 148 KGLKEVLVGMKVGGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206
KG E + GMKVGG RR IPP +GY IP N L+FEV+LL
Sbjct: 160 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIP------------PNATLVFEVELL 207
Query: 207 KV 208
V
Sbjct: 208 DV 209
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 88 SGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
SG++ +++ EG G EA G V ++Y ++G S+ D+ + P L +I
Sbjct: 104 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDR----NDPFAFVLGGGMVI 159
Query: 148 KGLKEVLVGMKVGGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206
KG E + GMKVGG RR IPP +GY IP N L+FEV+LL
Sbjct: 160 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIP------------PNATLVFEVELL 207
Query: 207 KV 208
V
Sbjct: 208 DV 209
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 88 SGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
SG++ +++ EG G EA G V ++Y ++G S+ D+ + P L +I
Sbjct: 104 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR----NDPFEFVLGGGMVI 159
Query: 148 KGLKEVLVGMKVGGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206
KG E + GMKVGG RR IPP +GY IP N L+FEV+LL
Sbjct: 160 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIP------------PNATLVFEVELL 207
Query: 207 KV 208
V
Sbjct: 208 DV 209
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 88 SGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
SG++ +++ EG G EA G V ++Y ++G S+ D+ + P L +I
Sbjct: 8 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR----NDPFAFVLGGGMVI 63
Query: 148 KGLKEVLVGMKVGGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206
KG E + GMKVGG RR IPP +GY IP N L+FEV+LL
Sbjct: 64 KGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIP------------PNATLVFEVELL 111
Query: 207 KV 208
V
Sbjct: 112 DV 113
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 17/108 (15%)
Query: 102 EASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGG 161
++ +GD++ ++Y + +G S++ Q + P + L ++IKG + L+GM G
Sbjct: 5 KSRKGDVLHMHYTGKLEDGTEFDSSLPQ----NQPFVFSLGTGQVIKGWDQGLLGMCEGE 60
Query: 162 KRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLLKV 208
KR+ +IP +GY P IP L+FEV+LLK+
Sbjct: 61 KRKLVIPSELGYGERGAPPKIP------------GGATLVFEVELLKI 96
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 85 KLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN 144
+LA G+ + E+ G GP+ V++ YV R +G F + P LD
Sbjct: 114 ELADGILMTELTPGTGPKPDANGRVEVRYVGRLPDGKI-------FDQSTQPQWFRLD-- 164
Query: 145 KIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQ 204
+I G L M G K R +IP Y E + D F PL+FE++
Sbjct: 165 SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPF-----------TPLVFEIE 213
Query: 205 LLKV 208
L+ V
Sbjct: 214 LIAV 217
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 106 GDIVQLNYVCR-RSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRR 164
GD++ ++Y +G HST +G+ P+ L + +KG + L GM VG KR+
Sbjct: 32 GDLMLVHYEGYLEKDGSLFHSTHKHNNGQ--PIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 165 ALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKV 208
+IPP++GY E IP E LIF + LL++
Sbjct: 90 LIIPPALGYGKEGKGKIPPE------------STLIFNIDLLEI 121
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 88 SGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
SG+ + + G GPEA +G +++ +YV + NG S+ ++ P+ + ++I
Sbjct: 12 SGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNR----GKPLTFRIGVGEVI 67
Query: 148 KGLKEVLVG------MKVGGKRRALIPPSVGY 173
KG + ++G M GGKR IPP + Y
Sbjct: 68 KGWDQGILGSDGIPPMLTGGKRTLRIPPELAY 99
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 90 VRIQEIIEGEGPE-ASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIK 148
V+I I G+G GD+V ++Y NG S+VD+ +P + ++IK
Sbjct: 8 VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDR----GSPFQCNIGVGQVIK 63
Query: 149 GLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRR-SLLSHANEPLIFEVQLLK 207
G + + VG K R IP P +GPR L N L+F+V+LLK
Sbjct: 64 GWDVGIPKLSVGEKARLTIPG------------PYAYGPRGFPGLIPPNSTLVFDVELLK 111
Query: 208 V 208
V
Sbjct: 112 V 112
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 77 EPEAIRTLKLASGVRIQEIIEGEGPEA-SEGDIVQLNYVCRRSNGYFVHSTVDQFSGESA 135
+P+A+ KL SG+ Q I G G A + D +++Y R +G S+ ++
Sbjct: 29 QPDAV---KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRER----GK 81
Query: 136 PVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGY 173
P N++IKG E L M+ G + R IP + Y
Sbjct: 82 PTTFR--PNEVIKGWTEALQLMREGDRWRLFIPYDLAY 117
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 109 VQLNYVCRRSNGYFVHSTVDQFSGESA---------PVILPLDENKIIKGLKEVLVGMKV 159
++++Y+ + +G +++++ + E+ P+ + E ++I+G +E ++ M+V
Sbjct: 8 IKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEV 67
Query: 160 GGKRRALIPPSVGYINEN 177
G ++ IP Y N N
Sbjct: 68 GDEKTVKIPAEKAYGNRN 85
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 86 LASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENK 145
L SG++ + I G G + + D V + Y R +G ST + +G+ A + ++
Sbjct: 104 LPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDST--EKTGKPATFQV----SQ 157
Query: 146 IIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQL 205
+I G E L M G +P + Y + + GP NE LIF++ L
Sbjct: 158 VIPGWTEALQLMPAGSTWEIYVPSGLAY---GPRSVGGPIGP--------NETLIFKIHL 206
Query: 206 LKV 208
+ V
Sbjct: 207 ISV 209
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 86 LASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENK 145
L SG++ + I G G + + D V + Y R +G ST + +G+ A ++
Sbjct: 28 LPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDST--EKTGKPA----TFQVSQ 81
Query: 146 IIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQL 205
+I G E L M G +P + Y + + GP NE LIF++ L
Sbjct: 82 VIPGWTEALQLMPAGSTWEIYVPSGLAY---GPRSVGGPIGP--------NETLIFKIHL 130
Query: 206 LKV 208
+ V
Sbjct: 131 ISV 133
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 109 VQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIP 168
V +++ + +G ST + P + L + + +GL++ L+G+KVG K +
Sbjct: 31 VLVHFTLKLDDGTTAESTRNN----GKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLE 86
Query: 169 PSVGYINENLKPIPD--EFGPRRSLLSHANEPLIFEVQLLKVL 209
P + P PD ++ RR + A EP I + L +
Sbjct: 87 PDAAFG----VPSPDLIQYFSRREFMD-AGEPEIGAIMLFTAM 124
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 97 EGEGPEA-SEGDIVQLNYVCRRSNGY-FVHSTVDQFSGESAPVILPLDENKIIKGLKEVL 154
E EG E +EG +V + + +G F+ D E P DE +I+GL +
Sbjct: 269 EXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHD----EQEPFEFKTDEEAVIEGLDRAV 324
Query: 155 VGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLL 206
+ MK G IPP Y + K + + N +I+EV+L+
Sbjct: 325 LNMKKGEVALVTIPPEYAYGSTESK---------QDAIVPPNSTVIYEVELV 367
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 106 GDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRA 165
GD V+++Y +G S+ D+ L + ++IKG + + MK G
Sbjct: 46 GDEVEVHYTGTLLDGKKFDSSRDR----DDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 101
Query: 166 LIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206
IPP + Y P IP AN L F+V+LL
Sbjct: 102 TIPPELAYGESGSPPTIP------------ANATLQFDVELL 131
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 97 EGEGPEA-SEGDIVQLNYVCRRSNGY-FVHSTVDQFSGESAPVILPLDENKIIKGLKEVL 154
E EG E +EG +V + + +G F+ D E P DE +I+GL +
Sbjct: 253 EXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHD----EQEPFEFKTDEEAVIEGLDRAV 308
Query: 155 VGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLL 206
+ MK G IPP Y + K + + N +I+EV+L+
Sbjct: 309 LNMKKGEVALVTIPPEYAYGSTESK---------QDAIVPPNSTVIYEVELV 351
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 106 GDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRA 165
GD V+++Y +G S+ D+ L + ++IKG + + MK G
Sbjct: 30 GDEVEVHYTGTLLDGKKFDSSRDR----DDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 85
Query: 166 LIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206
IPP + Y P IP AN L F+V+LL
Sbjct: 86 TIPPELAYGESGSPPTIP------------ANATLQFDVELL 115
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 89 GVRIQEIIEGEGPE-ASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKII 147
GV I+ I G+G +G ++Y NG S+ D+ + P + + ++I
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDR----NKPFKFRIGKQEVI 56
Query: 148 KGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLK 207
KG +E M +G + + P V Y P P N LIF+V+LL
Sbjct: 57 KGFEEGAAQMSLGQRAKLTCTPDVAY---GATGHPGVIPP--------NATLIFDVELLN 105
Query: 208 V 208
+
Sbjct: 106 L 106
>pdb|4F0L|A Chain A, Crystal Structure Of Amidohydrolase From Brucella
Melitensis
pdb|4F0L|B Chain B, Crystal Structure Of Amidohydrolase From Brucella
Melitensis
Length = 458
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 11 LFPCASKSSSIKGGRPNGGVSQNLFAKFSSLTVKRLPR 48
LF A +I GRP G+ + A F SL V+RLP
Sbjct: 368 LFDGAVLGGNIAMGRPEDGLKKGASADFVSLDVERLPH 405
>pdb|3PI7|A Chain A, Crystal Structure Of A Putative Nadph:quinone Reductase
(Mll3093) From Mesorhizobium Loti At 1.71 A Resolution
Length = 349
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 41 LTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMPDMKEPEAIR------TLKLASGV---- 90
+TV+R + LL+ IG + ++ PDF+A + ++ + E R T LAS +
Sbjct: 194 VTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVXKAEQPRIFLDAVTGPLASAIFNAX 253
Query: 91 --RIQEIIEGE-GPEASE-GDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVIL 139
R + II G P+A+ + QL + + G+++ QF P IL
Sbjct: 254 PKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWXRQFKERRGPAIL 306
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 26/184 (14%)
Query: 32 QNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVR 91
Q+ FA S L+ + + +TL F + DA + K E GV+
Sbjct: 59 QDAFADKSKLSDQEI-EQTLQAFEARVKSSAQAKXEKDAADNEAKGKEYREKFAKEKGVK 117
Query: 92 ------IQEIIE-GEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN 144
+ +++E G+G + D V +NY +G D P+ LD
Sbjct: 118 TSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDG----KEFDNSYTRGEPLSFRLD-- 171
Query: 145 KIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQ 204
+I G E L +K GGK + +IPP + Y + IP N L+F+V+
Sbjct: 172 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIP------------PNSTLVFDVE 219
Query: 205 LLKV 208
LL V
Sbjct: 220 LLDV 223
>pdb|2HYO|A Chain A, Crystal Structure Of Rv0805 N97a Mutant
Length = 280
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 129 QFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPS-VGYINENL-KPIPD 183
+F + AP + PLD +I GL+ +++ V G I S +G++ E L P PD
Sbjct: 108 KFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPD 164
>pdb|2HYP|A Chain A, Crystal Structure Of Rv0805 D66a Mutant
Length = 280
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 129 QFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPS-VGYINENL-KPIPD 183
+F + AP + PLD +I GL+ +++ V G I S +G++ E L P PD
Sbjct: 108 KFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPD 164
>pdb|2HY1|A Chain A, Crystal Structure Of Rv0805
Length = 280
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 129 QFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPS-VGYINENL-KPIPD 183
+F + AP + PLD +I GL+ +++ V G I S +G++ E L P PD
Sbjct: 108 KFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPD 164
>pdb|3IB7|A Chain A, Crystal Structure Of Full Length Rv0805
pdb|3IB8|A Chain A, Crystal Structure Of Full Length Rv0805 In Complex With
5'-amp
Length = 330
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 129 QFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPS-VGYINENL-KPIPD 183
+F + AP + PLD +I GL+ +++ V G I S +G++ E L P PD
Sbjct: 118 KFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPD 174
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 26/184 (14%)
Query: 32 QNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVR 91
Q+ FA S L+ + + +TL F + DA + K E GV+
Sbjct: 59 QDAFADKSKLSDQEI-EQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVK 117
Query: 92 ------IQEIIE-GEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN 144
+ +++E G+G + D V +NY +G D P+ LD
Sbjct: 118 TSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDG----KEFDNSYTRGEPLSFRLD-- 171
Query: 145 KIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQ 204
+I G E L +K GGK + +IPP + Y + IP N L+F+V+
Sbjct: 172 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIP------------PNSTLVFDVE 219
Query: 205 LLKV 208
LL V
Sbjct: 220 LLDV 223
>pdb|3A5C|H Chain H, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|P Chain P, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|H Chain H, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|P Chain P, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|H Chain H, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 104
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 28/115 (24%)
Query: 72 MPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQ-- 129
M + +PE + +LA +EG G ++E L + R G + VD+
Sbjct: 1 MAVIADPETAQGFRLAG-------LEGYGASSAEEAQSLLETLVER--GGYALVAVDEAL 51
Query: 130 -----------FSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGY 173
G PV+LP I GLKE G V G R L+ ++G+
Sbjct: 52 LPDPERAVERLMRGRDLPVLLP------IAGLKEAFQGHDVEGYMRELVRKTIGF 100
>pdb|2K8I|A Chain A, Solution Structure Of E.Coli Slyd
Length = 171
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 108 IVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLD----ENKIIKGLKEVLVGMKVGGKR 163
+V L Y R +G V + +PV PLD +I GL+ L G +VG K
Sbjct: 8 VVSLAYQVRTEDGVLV---------DESPVSAPLDYLHGHGSLISGLETALEGHEVGDKF 58
Query: 164 RALIPPSVGY--INENL 178
+ + Y +ENL
Sbjct: 59 DVAVGANDAYGQYDENL 75
>pdb|2KFW|A Chain A, Solution Structure Of Full-Length Slyd From E.Coli
Length = 196
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 108 IVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLD----ENKIIKGLKEVLVGMKVGGKR 163
+V L Y R +G V + +PV PLD +I GL+ L G +VG K
Sbjct: 8 VVSLAYQVRTEDGVLV---------DESPVSAPLDYLHGHGSLISGLETALEGHEVGDKF 58
Query: 164 RALIPPSVGY--INENL 178
+ + Y +ENL
Sbjct: 59 DVAVGANDAYGQYDENL 75
>pdb|2D00|A Chain A, Subunit F Of V-Type AtpaseSYNTHASE
pdb|2D00|B Chain B, Subunit F Of V-Type AtpaseSYNTHASE
pdb|2D00|C Chain C, Subunit F Of V-Type AtpaseSYNTHASE
pdb|2D00|D Chain D, Subunit F Of V-Type AtpaseSYNTHASE
pdb|2D00|E Chain E, Subunit F Of V-Type AtpaseSYNTHASE
pdb|2D00|F Chain F, Subunit F Of V-Type AtpaseSYNTHASE
Length = 109
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 28/115 (24%)
Query: 72 MPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQ-- 129
M + +PE + +LA +EG G ++E L + R G + VD+
Sbjct: 6 MAVIADPETAQGFRLAG-------LEGYGASSAEEAQSLLETLVER--GGYALVAVDEAL 56
Query: 130 -----------FSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGY 173
G PV+LP I GLKE G V G R L+ ++G+
Sbjct: 57 LPDPERAVERLMRGRDLPVLLP------IAGLKEAFQGHDVEGYMRELVRKTIGF 105
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 135 APVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGY 173
PV + E +++ GL E ++ M VG +R ++PP +
Sbjct: 42 GPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 135 APVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGY 173
PV + E +++ GL E ++ M VG +R ++PP +
Sbjct: 42 GPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,046,654
Number of Sequences: 62578
Number of extensions: 247068
Number of successful extensions: 568
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 39
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)