Query 028432
Match_columns 209
No_of_seqs 271 out of 1450
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 1.9E-31 4E-36 214.4 12.8 109 83-209 96-205 (205)
2 KOG0544 FKBP-type peptidyl-pro 100.0 5.6E-30 1.2E-34 181.0 11.6 105 89-209 2-108 (108)
3 KOG0552 FKBP-type peptidyl-pro 100.0 6.9E-28 1.5E-32 197.7 12.9 109 84-209 116-226 (226)
4 KOG0549 FKBP-type peptidyl-pro 99.9 3.4E-27 7.4E-32 186.2 12.9 106 88-209 68-176 (188)
5 PRK11570 peptidyl-prolyl cis-t 99.9 1.1E-26 2.4E-31 190.5 14.5 108 84-209 98-206 (206)
6 TIGR03516 ppisom_GldI peptidyl 99.9 8.2E-26 1.8E-30 181.4 16.7 111 82-209 63-176 (177)
7 PRK10902 FKBP-type peptidyl-pr 99.9 2.1E-24 4.5E-29 183.3 14.8 108 84-209 142-249 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.9 7.2E-22 1.6E-26 142.4 11.5 89 102-206 4-94 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.8 4.8E-19 1E-23 139.5 10.6 74 102-179 4-77 (156)
10 COG1047 SlpA FKBP-type peptidy 99.7 1.8E-17 4E-22 131.2 10.5 104 102-209 2-141 (174)
11 PRK10737 FKBP-type peptidyl-pr 99.7 3.4E-17 7.4E-22 132.9 10.5 103 102-209 2-140 (196)
12 KOG0543 FKBP-type peptidyl-pro 99.7 2E-15 4.4E-20 132.6 15.4 103 87-209 83-190 (397)
13 TIGR00115 tig trigger factor. 99.2 1.7E-10 3.7E-15 103.7 10.5 86 101-209 145-230 (408)
14 KOG0543 FKBP-type peptidyl-pro 99.2 5.3E-11 1.2E-15 104.9 6.3 80 96-206 1-82 (397)
15 PRK01490 tig trigger factor; P 99.1 6.1E-10 1.3E-14 101.0 11.2 85 102-209 157-241 (435)
16 COG0544 Tig FKBP-type peptidyl 98.9 4.5E-09 9.8E-14 95.3 9.2 84 103-209 158-241 (441)
17 KOG0545 Aryl-hydrocarbon recep 97.9 3.9E-06 8.4E-11 70.5 1.8 81 85-169 7-91 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.4 5.6E-05 1.2E-09 60.4 1.3 40 139-178 1-40 (188)
19 PRK00226 greA transcription el 59.0 23 0.0005 27.5 4.9 24 146-169 122-145 (157)
20 PF10518 TAT_signal: TAT (twin 57.8 13 0.00029 20.0 2.4 15 46-60 2-16 (26)
21 PF01272 GreA_GreB: Transcript 52.7 35 0.00075 23.1 4.5 23 147-169 43-65 (77)
22 TIGR02811 formate_TAT formate 51.9 11 0.00024 25.2 1.8 16 45-60 8-23 (66)
23 TIGR01462 greA transcription e 51.8 83 0.0018 24.2 7.0 24 146-169 117-140 (151)
24 TIGR01480 copper_res_A copper- 50.7 72 0.0016 30.5 7.6 32 87-118 59-95 (587)
25 TIGR01461 greB transcription e 47.8 77 0.0017 24.7 6.3 25 146-170 119-143 (156)
26 PF07076 DUF1344: Protein of u 42.7 66 0.0014 21.3 4.3 40 82-123 17-56 (61)
27 PRK09774 fec operon regulator 42.0 1.4E+02 0.003 25.9 7.7 53 90-144 118-175 (319)
28 PHA02122 hypothetical protein 40.0 50 0.0011 21.4 3.3 20 104-124 39-58 (65)
29 PRK05892 nucleoside diphosphat 37.9 1.3E+02 0.0028 23.6 6.1 23 147-169 122-144 (158)
30 cd01088 MetAP2 Methionine Amin 36.1 94 0.002 26.6 5.6 54 99-163 67-126 (291)
31 TIGR00501 met_pdase_II methion 32.8 1.1E+02 0.0025 26.2 5.6 53 99-162 71-129 (295)
32 COG4922 Uncharacterized protei 32.2 76 0.0017 23.8 3.7 51 90-154 63-114 (129)
33 COG0782 Uncharacterized conser 31.9 2.4E+02 0.0053 21.8 7.2 23 146-168 115-137 (151)
34 PLN00067 PsbP domain-containin 31.6 57 0.0012 27.9 3.3 23 40-62 37-59 (263)
35 PLN00042 photosystem II oxygen 31.5 1.4E+02 0.003 25.5 5.7 26 42-67 46-72 (260)
36 cd01090 Creatinase Creatine am 31.0 1.6E+02 0.0034 24.2 5.9 54 100-164 74-136 (228)
37 PF05688 DUF824: Salmonella re 29.7 1E+02 0.0022 19.2 3.4 35 101-144 7-41 (47)
38 cd01089 PA2G4-like Related to 29.1 1.9E+02 0.0041 23.5 6.1 53 100-163 80-146 (228)
39 PRK08671 methionine aminopepti 28.9 1.4E+02 0.0031 25.5 5.5 52 100-162 69-126 (291)
40 PLN00044 multi-copper oxidase- 28.5 1.6E+02 0.0034 28.3 6.1 36 84-119 38-80 (596)
41 COG0024 Map Methionine aminope 27.3 2E+02 0.0042 24.6 5.9 52 101-163 85-146 (255)
42 TIGR01409 TAT_signal_seq Tat ( 26.7 64 0.0014 17.6 1.9 18 47-64 2-19 (29)
43 PF11874 DUF3394: Domain of un 26.1 92 0.002 25.2 3.5 56 103-168 72-129 (183)
44 PTZ00053 methionine aminopepti 25.6 1.2E+02 0.0026 28.2 4.7 52 100-162 231-288 (470)
45 PF09122 DUF1930: Domain of un 25.5 1.1E+02 0.0025 20.3 3.2 22 148-169 35-56 (68)
46 TIGR03096 nitroso_cyanin nitro 25.2 2.1E+02 0.0046 21.9 5.2 28 87-114 43-76 (135)
47 PRK01885 greB transcription el 24.1 3E+02 0.0066 21.4 6.1 24 147-170 122-145 (157)
48 TIGR00495 crvDNA_42K 42K curve 22.3 2.2E+02 0.0047 25.7 5.6 53 101-164 99-165 (389)
49 TIGR00500 met_pdase_I methioni 21.7 2.4E+02 0.0052 23.1 5.4 52 100-162 81-141 (247)
50 PRK12897 methionine aminopepti 21.0 3.3E+02 0.0072 22.4 6.2 54 99-163 81-143 (248)
51 PRK05753 nucleoside diphosphat 20.9 2.3E+02 0.005 21.5 4.7 24 146-169 91-114 (137)
52 PF01346 FKBP_N: Domain amino 20.6 69 0.0015 23.4 1.8 11 84-94 114-124 (124)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=214.36 Aligned_cols=109 Identities=38% Similarity=0.655 Sum_probs=103.9
Q ss_pred eeecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccE
Q 028432 83 TLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGK 162 (209)
Q Consensus 83 ~~~~~sGl~~~~l~~G~G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~ 162 (209)
..++++|++|++++.|+|+.+..+|.|++||++++.||++|||++++ ++|+.|.+| ++|+||+++|.+|++|++
T Consensus 96 v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~r----g~p~~f~l~--~vI~Gw~egl~~M~vG~k 169 (205)
T COG0545 96 VKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDR----GQPAEFPLG--GVIPGWDEGLQGMKVGGK 169 (205)
T ss_pred ceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCcccccccc----CCCceeecC--CeeehHHHHHhhCCCCce
Confidence 45789999999999999999999999999999999999999999999 899999995 999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCC-CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 163 RRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 163 ~~v~vp~~~ayg~~g~~~-iP~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
|+++||+++|||.++... || ||++|+|+|+|++|+
T Consensus 170 ~~l~IP~~laYG~~g~~g~Ip------------pns~LvFeVeLl~v~ 205 (205)
T COG0545 170 RKLTIPPELAYGERGVPGVIP------------PNSTLVFEVELLDVK 205 (205)
T ss_pred EEEEeCchhccCcCCCCCCCC------------CCCeEEEEEEEEecC
Confidence 999999999999999655 88 999999999999985
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-30 Score=181.01 Aligned_cols=105 Identities=32% Similarity=0.519 Sum_probs=100.0
Q ss_pred CeEEEEEEcCCCCC-CCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEe
Q 028432 89 GVRIQEIIEGEGPE-ASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALI 167 (209)
Q Consensus 89 Gl~~~~l~~G~G~~-~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~v 167 (209)
|+..++|..|+|.. ++.||.|++||++.+.||++|||+.++ +.||.|.+|.+++|+||+|++..|.+|++.++.|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr----~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti 77 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDR----GKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTI 77 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccccc----CCCeeEEecCcceeechhhcchhccccccceeee
Confidence 68899999999954 999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC-CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 168 PPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 168 p~~~ayg~~g~~~-iP~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
.|+++||..|.+. || ||++|+|||||++|+
T Consensus 78 ~pd~aYG~~G~p~~Ip------------pNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 78 SPDYAYGPRGHPGGIP------------PNATLVFDVELLKVN 108 (108)
T ss_pred ccccccCCCCCCCccC------------CCcEEEEEEEEEecC
Confidence 9999999999755 88 999999999999984
No 3
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.9e-28 Score=197.75 Aligned_cols=109 Identities=38% Similarity=0.688 Sum_probs=104.5
Q ss_pred eecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEec-CCeEEeccccCCCCCCCCEE-EEcCCCcchhHHHHHHcCccccc
Q 028432 84 LKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRS-NGYFVHSTVDQFSGESAPVI-LPLDENKIIKGLKEVLVGMKVGG 161 (209)
Q Consensus 84 ~~~~sGl~~~~l~~G~G~~~~~gd~V~v~y~~~~~-dG~~~~st~~~~~g~~~p~~-f~lG~~~~i~Gl~eaL~gmk~G~ 161 (209)
.++++||+|++++.|+|+.+..|++|.+||.+++. +|++||+++.. .|+. |.+|.+++|+||+.++.||++|+
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-----kp~~~f~lg~g~VIkG~d~gv~GMkvGG 190 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-----KPFKLFRLGSGEVIKGWDVGVEGMKVGG 190 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCC-----CCccccccCCCCCCchHHHhhhhhccCC
Confidence 57899999999999999999999999999999999 99999999874 7888 99999999999999999999999
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 162 KRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 162 ~~~v~vp~~~ayg~~g~~~iP~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
+|+|+|||+++||.++.+.|| ||++|+|+|||+.|+
T Consensus 191 kRrviIPp~lgYg~~g~~~Ip------------pnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 191 KRRVIIPPELGYGKKGVPEIP------------PNSTLVFDVELLSVK 226 (226)
T ss_pred eeEEEeCccccccccCcCcCC------------CCCcEEEEEEEEecC
Confidence 999999999999999998899 999999999999984
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.4e-27 Score=186.19 Aligned_cols=106 Identities=31% Similarity=0.581 Sum_probs=95.1
Q ss_pred CCeEEEEEEc--CCCCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEE
Q 028432 88 SGVRIQEIIE--GEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRA 165 (209)
Q Consensus 88 sGl~~~~l~~--G~G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v 165 (209)
+++++.++++ ....+.+.||++.+||++.+.||++|||||.+ ++|++|++|.+++|+|||++|.+|++||+|++
T Consensus 68 ~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~r----g~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl 143 (188)
T KOG0549|consen 68 EELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSR----GAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL 143 (188)
T ss_pred CceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccC----CCCEEEEeCCCceeccHhHHhhhhCcccceEE
Confidence 4444544443 25677999999999999999999999999998 88999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCC-CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 166 LIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 166 ~vp~~~ayg~~g~~~-iP~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
+|||+++||++|..+ || ++++|+|||||++|+
T Consensus 144 ~IPp~LgYG~~G~~~~IP------------~~A~LiFdiELv~i~ 176 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPKIP------------GDAVLIFDIELVKIE 176 (188)
T ss_pred ecCccccCccCCCCCCCC------------CCeeEEEEEEEEEee
Confidence 999999999999765 88 999999999999874
No 5
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.94 E-value=1.1e-26 Score=190.48 Aligned_cols=108 Identities=31% Similarity=0.522 Sum_probs=102.0
Q ss_pred eecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEE
Q 028432 84 LKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKR 163 (209)
Q Consensus 84 ~~~~sGl~~~~l~~G~G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~ 163 (209)
.++++|++|+++++|+|..|+.+|.|.+||++++.||++|++++++ ++|+.|.+ +++++||+++|.+|++|+++
T Consensus 98 ~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~----g~P~~f~l--~~vipG~~eaL~~M~~G~k~ 171 (206)
T PRK11570 98 NSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVAR----GEPAEFPV--NGVIPGWIEALTLMPVGSKW 171 (206)
T ss_pred EECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCC----CCCeEEEe--echhhHHHHHHcCCCCCCEE
Confidence 5679999999999999999999999999999999999999999987 78999999 57999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCC-CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 164 RALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 164 ~v~vp~~~ayg~~g~~~-iP~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
+++||++++||..+.++ || ||++|+|+|||++|+
T Consensus 172 ~~~IP~~lAYG~~g~~~~Ip------------p~s~Lif~veLl~i~ 206 (206)
T PRK11570 172 ELTIPHELAYGERGAGASIP------------PFSTLVFEVELLEIL 206 (206)
T ss_pred EEEECHHHcCCCCCCCCCcC------------CCCeEEEEEEEEEEC
Confidence 99999999999998754 88 999999999999985
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.94 E-value=8.2e-26 Score=181.35 Aligned_cols=111 Identities=26% Similarity=0.347 Sum_probs=102.3
Q ss_pred eeeecCCCeEEEEEEc--CCCCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCccc
Q 028432 82 RTLKLASGVRIQEIIE--GEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKV 159 (209)
Q Consensus 82 ~~~~~~sGl~~~~l~~--G~G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~ 159 (209)
.+.++++|++|+++++ |+|..|+.||.|++||++++.||++|+++++. .|+.|.+|.+++++||+++|.+|++
T Consensus 63 ~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-----~P~~f~vg~~~vi~Gl~e~L~~Mk~ 137 (177)
T TIGR03516 63 KYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEEL-----GPQTYKVDQQDLFSGLRDGLKLMKE 137 (177)
T ss_pred CceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCC-----CCEEEEeCCcchhHHHHHHHcCCCC
Confidence 3578999999999976 66778999999999999999999999999864 5999999999999999999999999
Q ss_pred ccEEEEEeCCCCCCCCCCCCC-CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 160 GGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 160 G~~~~v~vp~~~ayg~~g~~~-iP~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
|++++|+||+++|||.++..+ || +|++|+|+|+|++|+
T Consensus 138 Ge~~~~~iP~~~AYG~~g~~~~Ip------------pns~L~f~IeL~~i~ 176 (177)
T TIGR03516 138 GETATFLFPSHKAYGYYGDQNKIG------------PNLPIISTVTLLNIK 176 (177)
T ss_pred CCEEEEEECHHHcCCCCCCCCCcC------------cCCcEEEEEEEEEec
Confidence 999999999999999998754 88 999999999999985
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=2.1e-24 Score=183.27 Aligned_cols=108 Identities=31% Similarity=0.505 Sum_probs=101.8
Q ss_pred eecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEE
Q 028432 84 LKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKR 163 (209)
Q Consensus 84 ~~~~sGl~~~~l~~G~G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~ 163 (209)
.++++|++|+++++|+|..|+.||.|.|||++++.||++|++++++ +.|+.|.+ +++++||+++|.+|++|+++
T Consensus 142 ~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~----g~p~~f~l--~~vipG~~EaL~~Mk~Gek~ 215 (269)
T PRK10902 142 KTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTR----GEPLSFRL--DGVIPGWTEGLKNIKKGGKI 215 (269)
T ss_pred EECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccC----CCceEEec--CCcchHHHHHHhcCCCCcEE
Confidence 4689999999999999999999999999999999999999999987 78999999 57999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 164 RALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 164 ~v~vp~~~ayg~~g~~~iP~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
+|+||++++||..+...|| +|++|+|+|+|++|+
T Consensus 216 ~l~IP~~laYG~~g~~gIp------------pns~LvfeVeLl~V~ 249 (269)
T PRK10902 216 KLVIPPELAYGKAGVPGIP------------ANSTLVFDVELLDVK 249 (269)
T ss_pred EEEECchhhCCCCCCCCCC------------CCCcEEEEEEEEEec
Confidence 9999999999999876688 999999999999984
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.88 E-value=7.2e-22 Score=142.42 Aligned_cols=89 Identities=39% Similarity=0.749 Sum_probs=83.7
Q ss_pred CCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEeCCCCCCCCCCCCC-
Q 028432 102 EASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKP- 180 (209)
Q Consensus 102 ~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~vp~~~ayg~~g~~~- 180 (209)
.++.||.|++||++++.||++|++++.. .+|+.|.+|.+++++||+++|.+|++|+++++.||++++||..+..+
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~----~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~ 79 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQE----GEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPP 79 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTT----TSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTT
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeec----CcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCC
Confidence 4999999999999999999999999876 78999999999999999999999999999999999999999988743
Q ss_pred -CCCCCCCcccccCCCCCcEEEEEEEE
Q 028432 181 -IPDEFGPRRSLLSHANEPLIFEVQLL 206 (209)
Q Consensus 181 -iP~~~~~~~~~~i~~~~~l~f~Vell 206 (209)
|| ++++|+|+|+|+
T Consensus 80 ~ip------------~~~~l~f~Iell 94 (94)
T PF00254_consen 80 KIP------------PNSTLVFEIELL 94 (94)
T ss_dssp TBT------------TTSEEEEEEEEE
T ss_pred CcC------------CCCeEEEEEEEC
Confidence 77 999999999996
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.79 E-value=4.8e-19 Score=139.54 Aligned_cols=74 Identities=20% Similarity=0.414 Sum_probs=69.6
Q ss_pred CCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEeCCCCCCCCCCCC
Q 028432 102 EASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLK 179 (209)
Q Consensus 102 ~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~vp~~~ayg~~g~~ 179 (209)
.++.|+.|.+||++++.||++|++|++. ++|+.|.+|.+++++||+++|.+|++|+++++.|||+.+||.++..
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~----~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~~ 77 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNN----GKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSPD 77 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCC----CCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5889999999999999999999999876 6899999999999999999999999999999999999999988753
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-17 Score=131.22 Aligned_cols=104 Identities=28% Similarity=0.489 Sum_probs=86.7
Q ss_pred CCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEeCCCCCCCCCCCCC-
Q 028432 102 EASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKP- 180 (209)
Q Consensus 102 ~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~vp~~~ayg~~g~~~- 180 (209)
.+++||.|.+||++++.||++||+|... ..|+.|.+|.+++++||+++|.||.+|++..+.|||+.|||.++...
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~----~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~lv 77 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDEN----YGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDLV 77 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEccccc----CCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHHe
Confidence 4789999999999999999999999874 58999999999999999999999999999999999999999987532
Q ss_pred --CCCC-CCCcccc--------------------------------cCCCCCcEEEEEEEEEeC
Q 028432 181 --IPDE-FGPRRSL--------------------------------LSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 181 --iP~~-~~~~~~~--------------------------------~i~~~~~l~f~Vell~i~ 209 (209)
+|.+ |.....+ ...+|++|.|+|+|+++.
T Consensus 78 q~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~ 141 (174)
T COG1047 78 QRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVR 141 (174)
T ss_pred EEecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEe
Confidence 4432 3332111 111899999999999874
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.72 E-value=3.4e-17 Score=132.91 Aligned_cols=103 Identities=24% Similarity=0.356 Sum_probs=85.6
Q ss_pred CCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEeCCCCCCCCCCCCC-
Q 028432 102 EASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKP- 180 (209)
Q Consensus 102 ~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~vp~~~ayg~~g~~~- 180 (209)
++++++.|++||++++.||++|++|+. ..|+.|.+|.++++|+|+++|.+|++|+++.|.|||+.|||.++...
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-----~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~lV 76 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLV 76 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-----CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHHE
Confidence 478899999999999999999999976 38999999999999999999999999999999999999999987632
Q ss_pred --CCCC-CCCccccc--------------------------------CCCCCcEEEEEEEEEeC
Q 028432 181 --IPDE-FGPRRSLL--------------------------------SHANEPLIFEVQLLKVL 209 (209)
Q Consensus 181 --iP~~-~~~~~~~~--------------------------------i~~~~~l~f~Vell~i~ 209 (209)
+|.+ |.....+. ..++.+|.|+|+|++|.
T Consensus 77 ~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr 140 (196)
T PRK10737 77 QRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIR 140 (196)
T ss_pred EEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEec
Confidence 4443 43211110 01789999999999874
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2e-15 Score=132.57 Aligned_cols=103 Identities=30% Similarity=0.439 Sum_probs=90.1
Q ss_pred CCCeEEEEEEcCCC--CCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCC-CcchhHHHHHHcCcccccEE
Q 028432 87 ASGVRIQEIIEGEG--PEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDE-NKIIKGLKEVLVGMKVGGKR 163 (209)
Q Consensus 87 ~sGl~~~~l~~G~G--~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~-~~~i~Gl~eaL~gmk~G~~~ 163 (209)
+.+|..+|+++|.| ..|.+|..|.+||.+++.|+ +|+++ ...|.|..|. ..++.||+.+|..|++|+..
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~-------~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a 154 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR-------ELRFEFGEGEDIDVIEGLEIALRMMKVGEVA 154 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc-------ccceEEecCCccchhHHHHHHHHhcCccceE
Confidence 89999999999999 56999999999999998777 67764 3457888887 47999999999999999999
Q ss_pred EEEeCCCCCCCCCCC-CC-CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 164 RALIPPSVGYINENL-KP-IPDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 164 ~v~vp~~~ayg~~g~-~~-iP~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
.|+|+|+++||..+. .+ || ||++|.|+|+|+++.
T Consensus 155 ~v~i~~~YayG~~~~~~p~IP------------PnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 155 LVTIDPKYAYGEEGGEPPLIP------------PNATLLYEVELLDFE 190 (397)
T ss_pred EEEeCcccccCCCCCCCCCCC------------CCceEEEEEEEEeee
Confidence 999999999995544 33 77 999999999999863
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.17 E-value=1.7e-10 Score=103.70 Aligned_cols=86 Identities=27% Similarity=0.382 Sum_probs=76.6
Q ss_pred CCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEeCCCCCCCCCCCCC
Q 028432 101 PEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKP 180 (209)
Q Consensus 101 ~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~vp~~~ayg~~g~~~ 180 (209)
..++.||.|++||+++. ||..|+++. ..++.|.+|.+.+++||+++|.||++|+++.+.++....|+....
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~------~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-- 215 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK------AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-- 215 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC------CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC--
Confidence 35889999999999975 899888754 468999999999999999999999999999999998888887654
Q ss_pred CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 181 IPDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 181 iP~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
+|.++.|+|+|.+|+
T Consensus 216 --------------~gk~~~f~v~i~~I~ 230 (408)
T TIGR00115 216 --------------AGKEATFKVTVKEVK 230 (408)
T ss_pred --------------CCCeEEEEEEEEEec
Confidence 799999999999885
No 14
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.3e-11 Score=104.88 Aligned_cols=80 Identities=35% Similarity=0.522 Sum_probs=71.3
Q ss_pred EcCCCCC-CCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEeCCCCCCC
Q 028432 96 IEGEGPE-ASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYI 174 (209)
Q Consensus 96 ~~G~G~~-~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~vp~~~ayg 174 (209)
++|+|.. |..||.|.+||++++.||+.||||.+ +.|+.|.+|.+++|.||+.++..|+. |
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-----~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g 61 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-----GDPFKFDLGKGSVIKGWDLGVATMKK--------------G 61 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-----CCceeeecCCCccccccccccccccc--------------c
Confidence 4788865 99999999999999999999999987 48999999999999999999999988 5
Q ss_pred CCCCCC-CCCCCCCcccccCCCCCcEEEEEEEE
Q 028432 175 NENLKP-IPDEFGPRRSLLSHANEPLIFEVQLL 206 (209)
Q Consensus 175 ~~g~~~-iP~~~~~~~~~~i~~~~~l~f~Vell 206 (209)
..+.++ || ++.+|.|+|+|+
T Consensus 62 ~~~~pp~ip------------~~a~l~fe~el~ 82 (397)
T KOG0543|consen 62 EAGSPPKIP------------SNATLLFEVELL 82 (397)
T ss_pred ccCCCCCCC------------CCcceeeeeccc
Confidence 555555 88 999999999975
No 15
>PRK01490 tig trigger factor; Provisional
Probab=99.11 E-value=6.1e-10 Score=100.96 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=75.7
Q ss_pred CCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEeCCCCCCCCCCCCCC
Q 028432 102 EASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPI 181 (209)
Q Consensus 102 ~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~vp~~~ayg~~g~~~i 181 (209)
.++.||.|++||+++. ||..|+++. ..++.|.+|.+++++||+++|.||++|+++.+.++....|+....
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~------~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGK------AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCC------CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC---
Confidence 4899999999999996 898888753 468999999999999999999999999999999988888877654
Q ss_pred CCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 182 PDEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 182 P~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
+|.++.|.|+|.+|+
T Consensus 227 -------------agk~~~f~v~v~~V~ 241 (435)
T PRK01490 227 -------------AGKEATFKVTVKEVK 241 (435)
T ss_pred -------------CCCeEEEEEEEEEec
Confidence 789999999999885
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.5e-09 Score=95.34 Aligned_cols=84 Identities=26% Similarity=0.409 Sum_probs=73.5
Q ss_pred CCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEeCCCCCCCCCCCCCCC
Q 028432 103 ASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIP 182 (209)
Q Consensus 103 ~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~vp~~~ayg~~g~~~iP 182 (209)
++.||+|+|+|.++ .||..|.... .+.+.|.+|.+++||||+++|.||+.|+++.|.+.....|.....
T Consensus 158 a~~gD~v~IDf~g~-iDg~~fegg~------ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L---- 226 (441)
T COG0544 158 AENGDRVTIDFEGS-VDGEEFEGGK------AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL---- 226 (441)
T ss_pred cccCCEEEEEEEEE-EcCeeccCcc------ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----
Confidence 89999999999996 6999887643 468999999999999999999999999999987777777766655
Q ss_pred CCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432 183 DEFGPRRSLLSHANEPLIFEVQLLKVL 209 (209)
Q Consensus 183 ~~~~~~~~~~i~~~~~l~f~Vell~i~ 209 (209)
+|.+..|.|+|..|+
T Consensus 227 ------------aGK~a~F~V~vkeVk 241 (441)
T COG0544 227 ------------AGKEATFKVKVKEVK 241 (441)
T ss_pred ------------CCCceEEEEEEEEEe
Confidence 899999999999874
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.9e-06 Score=70.46 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=70.8
Q ss_pred ecCCCeEEEEEEcCCCCC--CCCCCEEEEEEEEEec--CCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccc
Q 028432 85 KLASGVRIQEIIEGEGPE--ASEGDIVQLNYVCRRS--NGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVG 160 (209)
Q Consensus 85 ~~~sGl~~~~l~~G~G~~--~~~gd~V~v~y~~~~~--dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G 160 (209)
....|++.+++..|+|.- ..+|..|.+||..... .++++|+|+.. ++|+.+.+|...-++-|+..|..|+++
T Consensus 7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~----gkPmeiiiGkkFkL~VwE~il~tM~v~ 82 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKV----GKPMEIIIGKKFKLEVWEIILTTMRVH 82 (329)
T ss_pred ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhc----CCCeEEeeccccccHHHHHHHHHHhhh
Confidence 345789999999999964 6799999999998876 36799999988 899999999888899999999999999
Q ss_pred cEEEEEeCC
Q 028432 161 GKRRALIPP 169 (209)
Q Consensus 161 ~~~~v~vp~ 169 (209)
+...|.+.-
T Consensus 83 EvaqF~~d~ 91 (329)
T KOG0545|consen 83 EVAQFWCDT 91 (329)
T ss_pred hHHHhhhhh
Confidence 998876643
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=5.6e-05 Score=60.44 Aligned_cols=40 Identities=33% Similarity=0.632 Sum_probs=35.7
Q ss_pred EEcCCCcchhHHHHHHcCcccccEEEEEeCCCCCCCCCCC
Q 028432 139 LPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENL 178 (209)
Q Consensus 139 f~lG~~~~i~Gl~eaL~gmk~G~~~~v~vp~~~ayg~~g~ 178 (209)
|.+|.+.+|+|++++|.||+.|+++++++||+++||..+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~ 40 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR 40 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc
Confidence 3567889999999999999999999999999999995543
No 19
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=58.96 E-value=23 Score=27.54 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.2
Q ss_pred chhHHHHHHcCcccccEEEEEeCC
Q 028432 146 IIKGLKEVLVGMKVGGKRRALIPP 169 (209)
Q Consensus 146 ~i~Gl~eaL~gmk~G~~~~v~vp~ 169 (209)
+...+-.+|.|.++|+.+.+.+|.
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcCC
Confidence 345688999999999999998765
No 20
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=57.76 E-value=13 Score=20.01 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=10.7
Q ss_pred cchHHHHHHHHHhhh
Q 028432 46 LPRRTLLQFIGFSSM 60 (209)
Q Consensus 46 ~~rr~~l~~~a~~~~ 60 (209)
.+||.+|...+++++
T Consensus 2 ~sRR~fLk~~~a~~a 16 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAA 16 (26)
T ss_pred CcHHHHHHHHHHHHH
Confidence 689999986554444
No 21
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=52.73 E-value=35 Score=23.09 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.0
Q ss_pred hhHHHHHHcCcccccEEEEEeCC
Q 028432 147 IKGLKEVLVGMKVGGKRRALIPP 169 (209)
Q Consensus 147 i~Gl~eaL~gmk~G~~~~v~vp~ 169 (209)
..-|-.+|.|.++|+...+.+|.
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETT
T ss_pred cCHHHHHhcCCCCCCEEEEEeCC
Confidence 45689999999999999998765
No 22
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=51.93 E-value=11 Score=25.19 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=11.2
Q ss_pred ccchHHHHHHHHHhhh
Q 028432 45 RLPRRTLLQFIGFSSM 60 (209)
Q Consensus 45 ~~~rr~~l~~~a~~~~ 60 (209)
..+||+||..++.+++
T Consensus 8 ~~sRR~Flk~lg~~aa 23 (66)
T TIGR02811 8 DPSRRDLLKGLGVGAA 23 (66)
T ss_pred CccHHHHHHHHHHHHH
Confidence 4689999886655443
No 23
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=51.81 E-value=83 Score=24.25 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.3
Q ss_pred chhHHHHHHcCcccccEEEEEeCC
Q 028432 146 IIKGLKEVLVGMKVGGKRRALIPP 169 (209)
Q Consensus 146 ~i~Gl~eaL~gmk~G~~~~v~vp~ 169 (209)
+...+-.+|.|.++|+...+..|.
T Consensus 117 ~~SPlG~ALlG~~~Gd~v~v~~p~ 140 (151)
T TIGR01462 117 IDSPLGKALIGKKVGDVVEVQTPK 140 (151)
T ss_pred CCCHHHHHHcCCCCCCEEEEEeCC
Confidence 345789999999999999998765
No 24
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=50.66 E-value=72 Score=30.49 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=19.4
Q ss_pred CCCeEEEEE-EcCC--CCC--CCCCCEEEEEEEEEec
Q 028432 87 ASGVRIQEI-IEGE--GPE--ASEGDIVQLNYVCRRS 118 (209)
Q Consensus 87 ~sGl~~~~l-~~G~--G~~--~~~gd~V~v~y~~~~~ 118 (209)
..|....++ ..|. |+. ++.||.|.|+++-.+.
T Consensus 59 ~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~ 95 (587)
T TIGR01480 59 FTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLP 95 (587)
T ss_pred cCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCC
Confidence 345444444 3342 443 7799999998876644
No 25
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=47.78 E-value=77 Score=24.74 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=20.6
Q ss_pred chhHHHHHHcCcccccEEEEEeCCC
Q 028432 146 IIKGLKEVLVGMKVGGKRRALIPPS 170 (209)
Q Consensus 146 ~i~Gl~eaL~gmk~G~~~~v~vp~~ 170 (209)
+...+-.+|.|.++|+.+.+.+|..
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 3456889999999999999987653
No 26
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=42.66 E-value=66 Score=21.26 Aligned_cols=40 Identities=23% Similarity=0.061 Sum_probs=29.1
Q ss_pred eeeecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEecCCeEE
Q 028432 82 RTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFV 123 (209)
Q Consensus 82 ~~~~~~sGl~~~~l~~G~G~~~~~gd~V~v~y~~~~~dG~~~ 123 (209)
.+.++++|=.|+.-.+=+=..++.|..|.|+|.-. +|+.+
T Consensus 17 ~titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~--~gk~v 56 (61)
T PF07076_consen 17 MTITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEV--DGKRV 56 (61)
T ss_pred eEEEecCCCEEECCCcccccccCCCCEEEEEEEcc--CCcEE
Confidence 36778888888865444445699999999999864 56544
No 27
>PRK09774 fec operon regulator FecR; Reviewed
Probab=42.00 E-value=1.4e+02 Score=25.92 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=31.4
Q ss_pred eEEEEEEcCCCCCCCCCCEEEEEEEE-----EecCCeEEeccccCCCCCCCCEEEEcCCC
Q 028432 90 VRIQEIIEGEGPEASEGDIVQLNYVC-----RRSNGYFVHSTVDQFSGESAPVILPLDEN 144 (209)
Q Consensus 90 l~~~~l~~G~G~~~~~gd~V~v~y~~-----~~~dG~~~~st~~~~~g~~~p~~f~lG~~ 144 (209)
.+-..+..|+--....++.+.++|.. ++.+|+.|.+.... ....||.+..|.+
T Consensus 118 ~r~v~L~DGS~v~Ln~~S~l~~~~~~~~R~v~L~~Gea~F~Va~d--~~~rPF~V~t~~~ 175 (319)
T PRK09774 118 VSRQRLEDGSLLTLNTQSAVDVRFDAHQRTVRLWYGEIAITTAKD--ALQRPFRVLTRQG 175 (319)
T ss_pred eEEEEcCCCCEEEEcCCCeEEEeecCCeeEEEEeccEEEEEEcCC--CCCCCEEEEeCCc
Confidence 44444455554457778888888853 24478877664332 0026787776654
No 28
>PHA02122 hypothetical protein
Probab=40.00 E-value=50 Score=21.44 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.1
Q ss_pred CCCCEEEEEEEEEecCCeEEe
Q 028432 104 SEGDIVQLNYVCRRSNGYFVH 124 (209)
Q Consensus 104 ~~gd~V~v~y~~~~~dG~~~~ 124 (209)
..||.|.++|... .+|+.|-
T Consensus 39 ~~gd~v~vn~e~~-~ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELV-VNGKLII 58 (65)
T ss_pred cCCCEEEEEEEEE-ECCEEEE
Confidence 4689999999987 4887765
No 29
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=37.94 E-value=1.3e+02 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.7
Q ss_pred hhHHHHHHcCcccccEEEEEeCC
Q 028432 147 IKGLKEVLVGMKVGGKRRALIPP 169 (209)
Q Consensus 147 i~Gl~eaL~gmk~G~~~~v~vp~ 169 (209)
...|-.+|.|.++|+.+.+..|.
T Consensus 122 ~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 122 DSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred CCHHHHHHhCCCCCCEEEEEcCC
Confidence 34688999999999999988765
No 30
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=36.08 E-value=94 Score=26.63 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=35.8
Q ss_pred CCCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCC------cchhHHHHHHcCcccccEE
Q 028432 99 EGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN------KIIKGLKEVLVGMKVGGKR 163 (209)
Q Consensus 99 ~G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~------~~i~Gl~eaL~gmk~G~~~ 163 (209)
+...+++||.|.++.-+. .||..-|.++ +|.+|.. ....+++.++..|++|-+.
T Consensus 67 d~~~l~~GDvV~iD~G~~-~dGY~sD~ar----------T~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~ 126 (291)
T cd01088 67 DDTVLKEGDVVKLDFGAH-VDGYIADSAF----------TVDFDPKYDDLLEAAKEALNAAIKEAGPDVRL 126 (291)
T ss_pred CCcccCCCCEEEEEEEEE-ECCEEEEEEE----------EEecChhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 345689999999998665 4887666542 4445432 1345677777778887653
No 31
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=32.77 E-value=1.1e+02 Score=26.22 Aligned_cols=53 Identities=17% Similarity=0.418 Sum_probs=34.9
Q ss_pred CCCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCC--c----chhHHHHHHcCcccccE
Q 028432 99 EGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN--K----IIKGLKEVLVGMKVGGK 162 (209)
Q Consensus 99 ~G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~--~----~i~Gl~eaL~gmk~G~~ 162 (209)
+...+++||.|.+++-+. .||..-|.+ .+|.+|.. . ...+++.++..|++|-+
T Consensus 71 d~~~l~~GDvV~iD~G~~-~dGY~aD~a----------rT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~ 129 (295)
T TIGR00501 71 DKTVFKDGDVVKLDLGAH-VDGYIADTA----------ITVDLGDQYDNLVKAAKDALYTAIKEIRAGVR 129 (295)
T ss_pred cCccCCCCCEEEEEEeEE-ECCEEEEEE----------EEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344689999999998665 588876654 34555532 2 23556667777777755
No 32
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.23 E-value=76 Score=23.81 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCCCCCCCCEEEEEEEEEecC-CeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHH
Q 028432 90 VRIQEIIEGEGPEASEGDIVQLNYVCRRSN-GYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVL 154 (209)
Q Consensus 90 l~~~~l~~G~G~~~~~gd~V~v~y~~~~~d-G~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL 154 (209)
.+.++++. +.+||+|.+||--++.. |..-.-+.+ .|++.+|.+.+=|+-+.
T Consensus 63 ~~~kiVr~-----iadGdLV~vh~hqt~~~pg~~~~v~~D---------tfR~ddgkivEHWDviq 114 (129)
T COG4922 63 ISTKIVRV-----IADGDLVTVHYHQTVSEPGSYTTVTFD---------TFRIDDGKIVEHWDVIQ 114 (129)
T ss_pred ccceeeEE-----eccCCEEEEEEeeeeCCCCcceeEEEE---------EEEeeCCceeeccchhh
Confidence 34555543 78899999999888653 432222221 34555566666676655
No 33
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=31.86 E-value=2.4e+02 Score=21.80 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.5
Q ss_pred chhHHHHHHcCcccccEEEEEeC
Q 028432 146 IIKGLKEVLVGMKVGGKRRALIP 168 (209)
Q Consensus 146 ~i~Gl~eaL~gmk~G~~~~v~vp 168 (209)
+...+-.+|.|.++|+...+..|
T Consensus 115 ~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 115 VDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred ccCHHHHHHhCCCCCCEEEEecC
Confidence 34568899999999999999876
No 34
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=31.62 E-value=57 Score=27.86 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=14.1
Q ss_pred cccccccchHHHHHHHHHhhhhh
Q 028432 40 SLTVKRLPRRTLLQFIGFSSMVL 62 (209)
Q Consensus 40 ~~~~~~~~rr~~l~~~a~~~~~~ 62 (209)
........||.+|..++++.+..
T Consensus 37 ~~~~~~~~rr~~~~~~~~~~~~~ 59 (263)
T PLN00067 37 PRAAVVIHRRELLLGLALAPLIL 59 (263)
T ss_pred ccccchhHHHHHHhhhhhhhhhh
Confidence 33444566888887776665433
No 35
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=31.50 E-value=1.4e+02 Score=25.53 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=13.5
Q ss_pred cccccchHHHHHHHHHh-hhhhccCCC
Q 028432 42 TVKRLPRRTLLQFIGFS-SMVLHVNPD 67 (209)
Q Consensus 42 ~~~~~~rr~~l~~~a~~-~~~~~~~~~ 67 (209)
.....+||.+|..++-+ ++..-..|+
T Consensus 46 ~~~~~srr~~l~~~~ga~a~~~~~~pa 72 (260)
T PLN00042 46 DNSAVSRRAALALLAGAAAAGAKVSPA 72 (260)
T ss_pred ccccccHHHHHHHHHHHHHhhcccCch
Confidence 33456888876654433 333333444
No 36
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=31.01 E-value=1.6e+02 Score=24.15 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCC---------cchhHHHHHHcCcccccEEE
Q 028432 100 GPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN---------KIIKGLKEVLVGMKVGGKRR 164 (209)
Q Consensus 100 G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~---------~~i~Gl~eaL~gmk~G~~~~ 164 (209)
...+++||.|.+++-.. .+|..-|.+ .+|.+|.- .+..+++.++..+|+|-+..
T Consensus 74 ~r~l~~GD~v~~d~g~~-~~GY~ad~~----------RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~ 136 (228)
T cd01090 74 NRKVQRGDILSLNCFPM-IAGYYTALE----------RTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCK 136 (228)
T ss_pred CcccCCCCEEEEEEeEE-ECCEeeeeE----------EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 35689999999998775 477755543 24445421 23456777777778776543
No 37
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=29.71 E-value=1e+02 Score=19.20 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=25.9
Q ss_pred CCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCC
Q 028432 101 PEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN 144 (209)
Q Consensus 101 ~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~ 144 (209)
..++.|+.+.+..+.+..+|..+. +.+|.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~---------n~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVP---------NAPFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcC---------CceEEEEecCc
Confidence 358889999999999887887665 35677766543
No 38
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=29.09 E-value=1.9e+02 Score=23.53 Aligned_cols=53 Identities=19% Similarity=0.373 Sum_probs=34.4
Q ss_pred CCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCC-------c-------chhHHHHHHcCcccccEE
Q 028432 100 GPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN-------K-------IIKGLKEVLVGMKVGGKR 163 (209)
Q Consensus 100 G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~-------~-------~i~Gl~eaL~gmk~G~~~ 163 (209)
...+++||.|.+++-+. .+|..-|-++ .|.+|.- . ...+.+.++..||+|-+.
T Consensus 80 ~~~l~~Gd~v~iD~g~~-~~GY~sD~tR----------T~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~ 146 (228)
T cd01089 80 TYTLKDGDVVKIDLGCH-IDGYIAVVAH----------TIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQN 146 (228)
T ss_pred CcccCCCCEEEEEEEEE-ECCEEEEEEE----------EEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 34589999999998766 4887666542 3444421 1 134567777888888654
No 39
>PRK08671 methionine aminopeptidase; Provisional
Probab=28.90 E-value=1.4e+02 Score=25.46 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=34.1
Q ss_pred CCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCC--c----chhHHHHHHcCcccccE
Q 028432 100 GPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN--K----IIKGLKEVLVGMKVGGK 162 (209)
Q Consensus 100 G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~--~----~i~Gl~eaL~gmk~G~~ 162 (209)
...+++||.|.+++-+. .||..-|.++ +|.+|.. . ...+++.++..+|+|-+
T Consensus 69 ~~~l~~GDvV~iD~G~~-~dGY~aD~ar----------T~~vG~~~~~l~~a~~~a~~aai~~ikpG~~ 126 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAH-VDGYIADTAV----------TVDLGGKYEDLVEASEEALEAAIEVVRPGVS 126 (291)
T ss_pred CcccCCCCEEEEEEeEE-ECCEEEEEEE----------EEEeChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34589999999998664 5888776542 4455522 1 24556667777777754
No 40
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=28.51 E-value=1.6e+02 Score=28.34 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=22.5
Q ss_pred eecCCC--eE-EEEEEcCC--CCC--CCCCCEEEEEEEEEecC
Q 028432 84 LKLASG--VR-IQEIIEGE--GPE--ASEGDIVQLNYVCRRSN 119 (209)
Q Consensus 84 ~~~~sG--l~-~~~l~~G~--G~~--~~~gd~V~v~y~~~~~d 119 (209)
...+.| .. ..+...|. |+. +.+||.|.|+.+-.+.+
T Consensus 38 ~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~ 80 (596)
T PLN00044 38 SAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDE 80 (596)
T ss_pred EEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCC
Confidence 346676 33 23445553 554 77999999987766543
No 41
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=27.35 E-value=2e+02 Score=24.55 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=36.1
Q ss_pred CCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCc------ch----hHHHHHHcCcccccEE
Q 028432 101 PEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENK------II----KGLKEVLVGMKVGGKR 163 (209)
Q Consensus 101 ~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~------~i----~Gl~eaL~gmk~G~~~ 163 (209)
..+++||.|.+++... .||..-|+. ..|.+|... ++ .+|+.++..+++|-+.
T Consensus 85 ~vlk~GDiv~IDvg~~-~dG~~~Dsa----------~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l 146 (255)
T COG0024 85 KVLKEGDIVKIDVGAH-IDGYIGDTA----------ITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARL 146 (255)
T ss_pred cccCCCCEEEEEEEEE-ECCeeeeEE----------EEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 4589999999999887 488877764 466776311 32 4577777777777653
No 42
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=26.66 E-value=64 Score=17.61 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=12.3
Q ss_pred chHHHHHHHHHhhhhhcc
Q 028432 47 PRRTLLQFIGFSSMVLHV 64 (209)
Q Consensus 47 ~rr~~l~~~a~~~~~~~~ 64 (209)
+||.++...++++.+.+.
T Consensus 2 sRR~Flk~~~~~~a~~~~ 19 (29)
T TIGR01409 2 SRRDFLKGAAAAGAAAGL 19 (29)
T ss_pred chhhhHHHHHHHHHHHhc
Confidence 689999877666554433
No 43
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=26.11 E-value=92 Score=25.19 Aligned_cols=56 Identities=25% Similarity=0.194 Sum_probs=35.8
Q ss_pred CCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcc-hhHH-HHHHcCcccccEEEEEeC
Q 028432 103 ASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKI-IKGL-KEVLVGMKVGGKRRALIP 168 (209)
Q Consensus 103 ~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~-i~Gl-~eaL~gmk~G~~~~v~vp 168 (209)
..+|+.+.+...+.+.+|+.... .+.++++++.- -.-+ +-+|.-+..|++..+--+
T Consensus 72 ~~~g~~lrl~V~G~~~~G~~~~k----------~v~lpl~~~~~g~eRL~~~GL~l~~e~~~~~Vd~v 129 (183)
T PF11874_consen 72 LPPGSSLRLRVEGPDFEGDPVTK----------TVLLPLGDGADGEERLEAAGLTLMEEGGKVIVDEV 129 (183)
T ss_pred CCCCCEEEEEEEccCCCCCceEE----------EEEEEcCCCCCHHHHHHhCCCEEEeeCCEEEEEec
Confidence 66788888888887777766643 35566665531 1112 235777889999877644
No 44
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=25.58 E-value=1.2e+02 Score=28.19 Aligned_cols=52 Identities=8% Similarity=0.169 Sum_probs=34.1
Q ss_pred CCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCC--c----chhHHHHHHcCcccccE
Q 028432 100 GPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN--K----IIKGLKEVLVGMKVGGK 162 (209)
Q Consensus 100 G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~--~----~i~Gl~eaL~gmk~G~~ 162 (209)
...+++||.|.|++-+. .||...|.++ +|.+|.. . +..+++.+|.-+++|-+
T Consensus 231 ~~vLk~GDvVkID~G~~-vdGYiaD~Ar----------Tv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 231 KTVLTYDDVCKLDFGTH-VNGRIIDCAF----------TVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred CcEecCCCeEEEEEeEE-ECCEEEeEEE----------EEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34589999999999776 5999888753 3344422 1 23456666666666654
No 45
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=25.52 E-value=1.1e+02 Score=20.32 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=17.1
Q ss_pred hHHHHHHcCcccccEEEEEeCC
Q 028432 148 KGLKEVLVGMKVGGKRRALIPP 169 (209)
Q Consensus 148 ~Gl~eaL~gmk~G~~~~v~vp~ 169 (209)
+.+..++..|..||+..++..+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 4688999999999999998654
No 46
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=25.16 E-value=2.1e+02 Score=21.94 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCCeEEEEEEcCCCC------CCCCCCEEEEEEE
Q 028432 87 ASGVRIQEIIEGEGP------EASEGDIVQLNYV 114 (209)
Q Consensus 87 ~sGl~~~~l~~G~G~------~~~~gd~V~v~y~ 114 (209)
..|+.++.++-|++. .++.||.|+++++
T Consensus 43 ~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 43 VEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE 76 (135)
T ss_pred eCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE
Confidence 688899999888762 2789999999986
No 47
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=24.06 E-value=3e+02 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred hhHHHHHHcCcccccEEEEEeCCC
Q 028432 147 IKGLKEVLVGMKVGGKRRALIPPS 170 (209)
Q Consensus 147 i~Gl~eaL~gmk~G~~~~v~vp~~ 170 (209)
...+-.+|.|.++|+.+.+.+|..
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~g 145 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPAG 145 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCCC
Confidence 456889999999999999987653
No 48
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=22.31 E-value=2.2e+02 Score=25.72 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCC----------cc----hhHHHHHHcCcccccEEE
Q 028432 101 PEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN----------KI----IKGLKEVLVGMKVGGKRR 164 (209)
Q Consensus 101 ~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~----------~~----i~Gl~eaL~gmk~G~~~~ 164 (209)
..+++||.|.|++-+. .||..-|.+ .+|.+|.. .+ ..+++.++..|++|-+..
T Consensus 99 ~~Lk~GDvVkIDlG~~-idGY~aD~a----------rTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~ 165 (389)
T TIGR00495 99 YILKEGDVVKIDLGCH-IDGFIALVA----------HTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNT 165 (389)
T ss_pred cCcCCCCEEEEEEEEE-ECCEEEEEE----------EEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 4589999999999776 488877764 34455521 12 245677888888886543
No 49
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=21.66 E-value=2.4e+02 Score=23.05 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=34.3
Q ss_pred CCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCC-C--------cchhHHHHHHcCcccccE
Q 028432 100 GPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDE-N--------KIIKGLKEVLVGMKVGGK 162 (209)
Q Consensus 100 G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~-~--------~~i~Gl~eaL~gmk~G~~ 162 (209)
...+++||.|.+++-+. .+|..-|-++ .|.+|. . .+..+++.++..+|+|-+
T Consensus 81 ~~~l~~Gd~v~iD~g~~-~~gY~aD~~R----------T~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 141 (247)
T TIGR00500 81 KKVLKDGDIVNIDVGVI-YDGYHGDTAK----------TFLVGKISPEAEKLLECTEESLYKAIEEAKPGNR 141 (247)
T ss_pred CcccCCCCEEEEEEEEE-ECCEEEEEEE----------EEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45689999999999876 4777665532 445552 1 134567777777788744
No 50
>PRK12897 methionine aminopeptidase; Reviewed
Probab=21.04 E-value=3.3e+02 Score=22.39 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=35.6
Q ss_pred CCCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCC---------cchhHHHHHHcCcccccEE
Q 028432 99 EGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN---------KIIKGLKEVLVGMKVGGKR 163 (209)
Q Consensus 99 ~G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~---------~~i~Gl~eaL~gmk~G~~~ 163 (209)
++..+++||.|.+++-+. .+|..-|.+ .+|.+|.- .+..+++.++..+++|-+.
T Consensus 81 ~~~~l~~Gd~V~iD~g~~-~~GY~sD~t----------RT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~ 143 (248)
T PRK12897 81 ADVPLTEGDIVTIDMVVN-LNGGLSDSA----------WTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRV 143 (248)
T ss_pred CCcccCCCCEEEEEeeEE-ECCEEEEEE----------EEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 345699999999999775 377766644 24555532 1245677777888888553
No 51
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=20.91 E-value=2.3e+02 Score=21.50 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=20.1
Q ss_pred chhHHHHHHcCcccccEEEEEeCC
Q 028432 146 IIKGLKEVLVGMKVGGKRRALIPP 169 (209)
Q Consensus 146 ~i~Gl~eaL~gmk~G~~~~v~vp~ 169 (209)
+..-+-.||.|.++|+...+..|.
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECCC
Confidence 345688999999999999987664
No 52
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=20.62 E-value=69 Score=23.40 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=7.6
Q ss_pred eecCCCeEEEE
Q 028432 84 LKLASGVRIQE 94 (209)
Q Consensus 84 ~~~~sGl~~~~ 94 (209)
++++|||+|+|
T Consensus 114 ~~t~SGLqY~V 124 (124)
T PF01346_consen 114 KTTESGLQYKV 124 (124)
T ss_dssp EE-TTS-EEEE
T ss_pred EECCCCCeeeC
Confidence 57789999986
Done!