BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028433
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana
GN=At5g19830 PE=2 SV=1
Length = 219
Score = 302 bits (774), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/213 (70%), Positives = 171/213 (80%), Gaps = 12/213 (5%)
Query: 2 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
+++R RR +CT+ V RPWLF+GLGNPGDKYKGTRHN +GFEMID FAES GI MN V+
Sbjct: 1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHN-IGFEMIDVFAESVGIQMNLVNF 59
Query: 61 KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
KA GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL
Sbjct: 60 KAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRL 119
Query: 121 RHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTA 170
+ GGHG HNGLKSVMN+FR GIG+PPGQMDPKAFLLQKF+ ARER+D A
Sbjct: 120 QEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKA 179
Query: 171 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 203
L EGV+ LKL+L+K ES R FN QKYKH++
Sbjct: 180 LAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212
>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1
Length = 256
Score = 226 bits (576), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 142/197 (72%), Gaps = 11/197 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL GLGNPG+KY GTRHN VGFEM+D A +GI+MNT+ K+ G G +G+ PVL+
Sbjct: 61 PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 119
Query: 78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
KPQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GVLRL+ GGHG HNGL++V+
Sbjct: 120 KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 179
Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
+ GIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 180 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 239
Query: 188 ESARHFNTIQKYKHIRL 204
S FN +QKYK R+
Sbjct: 240 GSTERFNLVQKYKFHRV 256
>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0132800 PE=2 SV=1
Length = 259
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/193 (55%), Positives = 138/193 (71%), Gaps = 11/193 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL GLGNPG KY GTRHN VGFEM+D A +GI+MNT+ K+ G G +G+ PVLL
Sbjct: 64 PWLIAGLGNPGSKYHGTRHN-VGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLV 122
Query: 78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
KPQ+Y+N SGE+ GPLAAYY++PL +LV +D+M LP GVLRL+ GGHG HNGL++VM
Sbjct: 123 KPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVME 182
Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
GIG PPG+MD +AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 183 CLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFS 242
Query: 188 ESARHFNTIQKYK 200
S FN +QKYK
Sbjct: 243 GSIERFNLVQKYK 255
>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana
GN=At1g18440 PE=2 SV=2
Length = 288
Score = 217 bits (552), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 102/195 (52%), Positives = 142/195 (72%), Gaps = 11/195 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL VGLGNPG KY+GTRHN VGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LA
Sbjct: 94 PWLIVGLGNPGKKYQGTRHN-VGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLA 152
Query: 78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
KPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G LRL GGHGGHNG++S+++
Sbjct: 153 KPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIID 212
Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
+ GIGRPPG+MD F+L++FN +E +D Q G+E +++LL +G
Sbjct: 213 RLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFN 272
Query: 188 ESARHFNTIQKYKHI 202
+SA NT + + +
Sbjct: 273 KSATFVNTRKSMEQL 287
>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A,
chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1
Length = 246
Score = 216 bits (551), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 109/193 (56%), Positives = 134/193 (69%), Gaps = 11/193 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL VGLGNPG KY GTRHN +GFEMID A + ISMNT+ KA G G VG+ P+LL
Sbjct: 51 PWLIVGLGNPGLKYYGTRHN-IGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLV 109
Query: 78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
KPQ YMN SGES GPLAAYY++PL +L+ +DDMGL GVLRL+ GGH HNGLK+V
Sbjct: 110 KPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTE 169
Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
+ GIG PPG MD KAFLLQKF+ + R+++D L++GVE +K L+ +G +
Sbjct: 170 HLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFS 229
Query: 188 ESARHFNTIQKYK 200
+S FN QKYK
Sbjct: 230 DSISRFNLGQKYK 242
>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B,
chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1
Length = 240
Score = 214 bits (546), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/193 (54%), Positives = 135/193 (69%), Gaps = 11/193 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL VGLGNPG+KY GTRHN VGFEMID A +G+ MNT+ KA G G + D P+LLA
Sbjct: 45 PWLIVGLGNPGNKYHGTRHN-VGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLA 103
Query: 78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
KPQTYMN SGES G LA++Y++PL +L+ +D+M LP GVLRL+ GG G HNG+KSVM
Sbjct: 104 KPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMG 163
Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
+ GIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+ G
Sbjct: 164 HLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFN 223
Query: 188 ESARHFNTIQKYK 200
+ FN +QKYK
Sbjct: 224 QGISRFNLVQKYK 236
>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os01g0693900 PE=2 SV=1
Length = 250
Score = 214 bits (546), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 141/196 (71%), Gaps = 11/196 (5%)
Query: 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLL 76
+PWLFVGLGNPG Y+GTRHN VGFEMID AE++GIS++++ KA G+G +GDAP++L
Sbjct: 54 KPWLFVGLGNPGKVYQGTRHN-VGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIML 112
Query: 77 AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM 136
AKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP LRL GGHGGHNG++S++
Sbjct: 113 AKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSII 172
Query: 137 NNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 186
N+ + GIGRPPG+MDP F+L+ FN +E +D A G+E ++++ +G
Sbjct: 173 NHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGF 232
Query: 187 TESARHFNTIQKYKHI 202
+SA + NT Q + +
Sbjct: 233 NKSATYVNTAQSSEML 248
>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os03g0347800 PE=2 SV=1
Length = 186
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 95/117 (81%), Gaps = 1/117 (0%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPV 74
V PWLFVGLGNPG+KY+ TRHN VGF+MID FA+SQGIS+ KA FG+G V PV
Sbjct: 57 VINPWLFVGLGNPGEKYQCTRHN-VGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPV 115
Query: 75 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 131
LLAKPQTYMNLSGES GPLAAYYKLPLNRVLV DDM LPCGVLRL+ GG+G HNG
Sbjct: 116 LLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172
>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth
PE=3 SV=1
Length = 213
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 111/180 (61%), Gaps = 10/180 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
WL VGLGNPG KY G RHN VGF ++D A +G A + VGDAPV+LAK
Sbjct: 35 WLVVGLGNPGPKYAGNRHN-VGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAK 93
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P +YMNLSG L+A+YK+P++R++V HD++ +P L+L+ GG GHNGL+S+ +
Sbjct: 94 PASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITAS 153
Query: 139 F---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIGRPPG+MD +F+LQ F+ R+ +D + + ++ +++ GL ++
Sbjct: 154 LGSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213
>sp|A8F920|PTH_BACP2 Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strain SAFR-032)
GN=pth PE=3 SV=1
Length = 188
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 104/183 (56%), Gaps = 10/183 (5%)
Query: 21 FVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 80
FVGLGNPG +Y+ TRHN VGF ID ++ I +N FG GFV VLL KP
Sbjct: 4 FVGLGNPGKEYEKTRHN-VGFMTIDELSKKWDIPLNQSKFHGQFGTGFVSGQKVLLVKPL 62
Query: 81 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM---- 136
TYMNLSGE PL YY +PL + V +DD+ LP G +RLR G GGHNG+KS++
Sbjct: 63 TYMNLSGECVRPLMDYYDIPLEHLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSLIQHLG 122
Query: 137 ----NNFR-GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 191
+ FR GIGRP M ++L +F+ + I +A+Q VE + L+K E
Sbjct: 123 SPEFDRFRIGIGRPQNGMKVVDYVLGRFSEEEQPDIASAIQASVEACEAALTKPFLEVMN 182
Query: 192 HFN 194
FN
Sbjct: 183 DFN 185
>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=pth PE=3 SV=1
Length = 188
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 11/188 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
WL VGLGNPG++Y TRHN +GF ++ AE G++ K+ +G + V L K
Sbjct: 2 WLIVGLGNPGERYARTRHN-IGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVK 60
Query: 79 PQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
PQTYMNLSG++ L +YK+ P +LV +DD+ LP LRLR G G HNG++S++
Sbjct: 61 PQTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVG 120
Query: 138 NF---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 188
GIG+PPGQMD ++L +F + L + +++++S+GLT
Sbjct: 121 QLGTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTA 180
Query: 189 SARHFNTI 196
+ +N +
Sbjct: 181 AMNRYNPL 188
>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630)
GN=pth PE=3 SV=1
Length = 186
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 10/185 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
++ VGLGNPG KY+ TRHN VGF++ID A+ IS+ + KA G+G VG VLL K
Sbjct: 2 YVVVGLGNPGKKYEKTRHN-VGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM-- 136
PQTYMNLSGE+ + YYK+ L+ ++V +DD+ L G +R+R G G HNG+KS+
Sbjct: 61 PQTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKC 120
Query: 137 ---NNF----RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
N+F G+ +P D F+L +F + I+ AL++ + + ++ + + S
Sbjct: 121 LGSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMS 180
Query: 190 ARHFN 194
+N
Sbjct: 181 MNKYN 185
>sp|A0PXL3|PTH_CLONN Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth
PE=3 SV=1
Length = 188
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 107/185 (57%), Gaps = 11/185 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGNPG +Y+ TRHN VGF++ID +E I +N K +G G + + V+L K
Sbjct: 2 FLIVGLGNPGKEYEHTRHN-VGFDIIDVISEKYNIDLNKKKFKGMYGDGTIANEKVILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES + +YK+P V+V +DD+ L G +R+R G GGHNG+K+++ +
Sbjct: 61 PLTYMNLSGESIKEVTDFYKIPKENVIVIYDDISLEVGRMRIREKGSAGGHNGIKNIIAH 120
Query: 139 F---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
F G+G+P Q D + +L KFN RE + + + + ++ KG E+
Sbjct: 121 FGSDVFPRIKVGVGQPV-QRDLVSHVLGKFNKDDREILSKVFEAASDAAENIIEKGTAEA 179
Query: 190 ARHFN 194
FN
Sbjct: 180 MNKFN 184
>sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3) GN=pth PE=3
SV=1
Length = 197
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 112/191 (58%), Gaps = 16/191 (8%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL GLGNPG Y G RHN GF ++D AE G + + +A + + A +LA
Sbjct: 10 PWLVAGLGNPGPTYAGNRHN-AGFMVVDLLAERTGSRLKSHRSRADVAETRLAGARAVLA 68
Query: 78 KPQTYMNLSGESTGPLAA---YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKS 134
+P ++MNLSG GP+AA +YK+ ++R++V HD++ +P G +RL+ GG GHNGL+S
Sbjct: 69 RPLSFMNLSG---GPVAAARSFYKVEVSRLIVVHDELDIPFGAVRLKRGGGDNGHNGLRS 125
Query: 135 VMNNF---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 185
+ + GIGRPPG+MDP F+L+ F + R + L+ + +++L++ G
Sbjct: 126 ISSALGTRDYLRVRVGIGRPPGRMDPADFVLRDFTSTERRELPLLLEHAADSVEMLIADG 185
Query: 186 LTESARHFNTI 196
L + ++ +
Sbjct: 186 LEPAQNRYHAL 196
>sp|A1TEG1|PTH_MYCVP Peptidyl-tRNA hydrolase OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=pth PE=3 SV=1
Length = 192
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 16/196 (8%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
+A P L VGLGNPG +Y TRHN GF ++D A+ G VH K A G +
Sbjct: 1 MAEPVLVVGLGNPGPQYATTRHN-AGFMVVDILADRMGEKFK-VHKKSGAEVATGRLAGR 58
Query: 73 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGL 132
PV+LAKP+ YMN SG GPLA +Y + V++ HD++ + G +RL+ GG GHNGL
Sbjct: 59 PVVLAKPRVYMNESGRQVGPLAKFYSVAPADVVIVHDELDIDFGRIRLKAGGGVAGHNGL 118
Query: 133 KSVM-----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 183
+SV N+F+ GIGRPPG +F+L+ FN++ R+ + T L++ + +LL++
Sbjct: 119 RSVASALGGNDFQRVRVGIGRPPGHKSGASFVLENFNSVERKEVPTILEQAADATELLVA 178
Query: 184 KGLTESARHFNTIQKY 199
+GL E A+ NT+ +
Sbjct: 179 QGL-EPAQ--NTVHAW 191
>sp|B2TI10|PTH_CLOBB Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Eklund 17B
/ Type B) GN=pth PE=3 SV=1
Length = 191
Score = 137 bits (344), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 110/193 (56%), Gaps = 12/193 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGNPG KY TRHN +GFE+ID + I +N + +G+GF+ + V+L K
Sbjct: 2 FLIVGLGNPGSKYDNTRHN-IGFEVIDNISNEYNIDINRQKFRGVYGEGFIANNKVILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSG+S +A +YK+ ++V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 61 PTTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIAN 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
G+G+P +D ++L KF+ +E + +++ ++ ++ + + +
Sbjct: 121 LSTDVFPRIKVGVGQP--NIDLVNYVLGKFSKEEKEVLKESIEVATNSVEEIIKQDVNSA 178
Query: 190 ARHFNTIQKYKHI 202
FN + K I
Sbjct: 179 MNKFNGFKANKSI 191
>sp|B2UXS9|PTH_CLOBA Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Alaska E43
/ Type E3) GN=pth PE=3 SV=1
Length = 191
Score = 137 bits (344), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 109/193 (56%), Gaps = 12/193 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGNPG KY TRHN +GFE+ID + I +N K +G+GF+ + V+L K
Sbjct: 2 FLIVGLGNPGSKYDNTRHN-IGFEVIDNISNEYNIDINRQKFKGVYGEGFIANNKVILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSG+S +A +YK+ ++V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 61 PTTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIAN 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
G+G+P + ++L KF+ +E + +++ ++ ++ + + +
Sbjct: 121 LSTDVFPRIKVGVGQPNDNL--VDYVLGKFSKEEKEVLKESIEAATNSVEEIIKQDINSA 178
Query: 190 ARHFNTIQKYKHI 202
FN + K I
Sbjct: 179 MNKFNGFKANKSI 191
>sp|A7GJW3|PTH_BACCN Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=pth PE=3 SV=1
Length = 186
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 101/185 (54%), Gaps = 10/185 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y+ TRHN +GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHN-IGFMAIDELAKRWNISLNEQKFKGMFGAGFVNGEKVILLKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGES PL YYK+ L ++ +DD+ LP G LRLR G GGHNG+KS + +
Sbjct: 62 LTYMNLSGESIRPLMDYYKIDLEDFIIMYDDLDLPVGKLRLRMKGSAGGHNGVKSTIAHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GI RP M ++L +F A ++ A+++ + L+K +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTAEEMVDVNHAIEKAANACEEWLNKSFLQVM 181
Query: 191 RHFNT 195
FN
Sbjct: 182 NDFNN 186
>sp|B1IGZ7|PTH_CLOBK Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra /
Type B1) GN=pth PE=3 SV=1
Length = 189
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGN G +YK TRHN +GF+++D AE I +N K ++G+G +G+ ++L K
Sbjct: 2 YLVVGLGNIGKEYKKTRHN-IGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 61 PSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQH 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIG+P + ++L KF+ RE ID L + ++ G+TE+
Sbjct: 121 LNSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIDKVLAMSAKACISIVEDGVTEA 178
Query: 190 ARHFNTIQ 197
+N ++
Sbjct: 179 MNKYNGVK 186
>sp|Q0RCD6|PTH_FRAAA Peptidyl-tRNA hydrolase OS=Frankia alni (strain ACN14a) GN=pth PE=3
SV=1
Length = 197
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 106/188 (56%), Gaps = 10/188 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL VGLGNPG Y G RHN GF ++D AE G + + +A + + +LA
Sbjct: 10 PWLVVGLGNPGPGYAGNRHN-AGFMVVDLLAERAGSRLKSHRSRADVAEVRLAGTRAILA 68
Query: 78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
+P ++MNLSG + +YK+ RV+V HD++ +P G +RL+ GG GHNGL+S+ +
Sbjct: 69 RPLSFMNLSGGPVSAVRTFYKIDPARVIVVHDELDIPFGSVRLKRGGGDNGHNGLRSISS 128
Query: 138 NF---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 188
GIGRPPG+MDP ++L+ F A R + L+ + +++L++ GL
Sbjct: 129 ALGTRDYLRVRVGIGRPPGRMDPADYVLRDFAAAERRELPLLLEHSADSVEMLITDGLEP 188
Query: 189 SARHFNTI 196
+ ++ +
Sbjct: 189 TQNRYHAL 196
>sp|A5I7R5|PTH_CLOBH Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=pth PE=3 SV=1
Length = 189
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGN G +YK TRHN +GF+++D AE I +N K ++G+G +G+ ++L K
Sbjct: 2 YLVVGLGNIGKEYKKTRHN-IGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 61 PSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQH 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 121 LNSDIFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 190 ARHFNTIQ 197
+N ++
Sbjct: 179 MNKYNGVK 186
>sp|A7FPJ7|PTH_CLOB1 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain ATCC 19397
/ Type A) GN=pth PE=3 SV=1
Length = 189
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGN G +YK TRHN +GF+++D AE I +N K ++G+G +G+ ++L K
Sbjct: 2 YLVVGLGNIGKEYKKTRHN-IGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 61 PSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQH 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 121 LNSDIFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 190 ARHFNTIQ 197
+N ++
Sbjct: 179 MNKYNGVK 186
>sp|B9LE93|PTH_CHLSY Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1
Length = 188
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 11/188 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
WL VGLGNPG++Y TRHN +GF +D AE G++ + +G + V+LAK
Sbjct: 2 WLIVGLGNPGERYARTRHN-IGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAK 60
Query: 79 PQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
PQTYMNLSG++ L +YK+ P +LV +DD+ LP LR+R G G HNG++S++
Sbjct: 61 PQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVA 120
Query: 138 NF---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 188
GIG+PPG+MD ++L +F + L + ++++L +GLT
Sbjct: 121 QLGTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTT 180
Query: 189 SARHFNTI 196
+ +N +
Sbjct: 181 AMNRYNPL 188
>sp|A9WBS1|PTH_CHLAA Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=pth PE=3 SV=1
Length = 188
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 11/188 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
WL VGLGNPG++Y TRHN +GF +D AE G++ + +G + V+LAK
Sbjct: 2 WLIVGLGNPGERYARTRHN-IGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAK 60
Query: 79 PQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
PQTYMNLSG++ L +YK+ P +LV +DD+ LP LR+R G G HNG++S++
Sbjct: 61 PQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVA 120
Query: 138 NF---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 188
GIG+PPG+MD ++L +F + L + ++++L +GLT
Sbjct: 121 QLGTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTT 180
Query: 189 SARHFNTI 196
+ +N +
Sbjct: 181 AMNRYNPL 188
>sp|C1FNE6|PTH_CLOBJ Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=pth PE=3 SV=1
Length = 189
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGN G +YK TRHN +GF+++D AE I +N K ++G+G +G+ ++L K
Sbjct: 2 YLVVGLGNIGKEYKKTRHN-IGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 61 PSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQH 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 121 LNSDIFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 190 ARHFNTIQ 197
+N ++
Sbjct: 179 MNKYNGVK 186
>sp|B1KTE2|PTH_CLOBM Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Loch Maree
/ Type A3) GN=pth PE=3 SV=1
Length = 189
Score = 134 bits (337), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGN G +YK TRHN +GF+++D AE I +N K ++G+G +G+ ++L K
Sbjct: 2 YLVVGLGNIGKEYKKTRHN-IGFDVVDIVAEKYNIEINRQKFKGSYGEGRIGNEKIILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 61 PSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQH 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 121 LNSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREVIEKVLAMSAKACISIVEDGVTEA 178
Query: 190 ARHFNTIQ 197
+N ++
Sbjct: 179 MNKYNGVK 186
>sp|A7GJD4|PTH_CLOBL Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=pth PE=3 SV=1
Length = 189
Score = 134 bits (337), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGN G +YK TRHN +GF+++D AE I +N K ++G+G +G+ ++L K
Sbjct: 2 YLVVGLGNIGKEYKKTRHN-IGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 61 PSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQH 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 121 LNSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 190 ARHFNTIQ 197
+N ++
Sbjct: 179 MNKYNGVK 186
>sp|C3KW96|PTH_CLOB6 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=pth PE=3 SV=1
Length = 189
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGN G +YK TRHN +GF+++D AE I +N K ++G+G +G+ ++L K
Sbjct: 2 YLVVGLGNIGKEYKQTRHN-IGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 61 PSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQH 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 121 LNSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 190 ARHFNTIQ 197
+N ++
Sbjct: 179 MNKYNGVK 186
>sp|A4T6N5|PTH_MYCGI Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (strain PYR-GCK)
GN=pth PE=3 SV=1
Length = 192
Score = 134 bits (336), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 115/197 (58%), Gaps = 16/197 (8%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
+A P L VGLGNPG +Y TRHN +GF + D A+ G + VH K A G +
Sbjct: 1 MAEPVLVVGLGNPGPQYATTRHN-IGFMVADVLADRMGETFK-VHKKSGAEVTTGRLAGR 58
Query: 73 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGL 132
PV+LAKP+ YMN SG GPLA +Y + V++ HD++ + G +RL+ GG GHNGL
Sbjct: 59 PVVLAKPRVYMNESGRQVGPLAKFYSIAPTDVVIIHDELDIDFGRIRLKAGGGVAGHNGL 118
Query: 133 KSV-----MNNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 183
+SV N+F+ GIGRPPGQ +F+L+ FN+ R + T +++ + +LL+
Sbjct: 119 RSVGSALSTNDFQRVRVGIGRPPGQKSGASFVLEPFNSRERPELGTIIEQAADATELLIE 178
Query: 184 KGLTESARHFNTIQKYK 200
G+ E A+ NT+ +
Sbjct: 179 LGI-EPAQ--NTVHAWS 192
>sp|Q9F8Q3|PTH_CARHZ Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2
Length = 187
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 107/185 (57%), Gaps = 11/185 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
++ GLGNPG +Y+ TRHN GF ++D A+ GI + K+ G+G + VLL K
Sbjct: 2 FIIAGLGNPGQEYENTRHN-AGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
PQTYMNLSG + ++YKLPL+R++V +DD+ LP G +RLR G GGH G+ S+++
Sbjct: 61 PQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISC 120
Query: 139 F---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIGR P D K ++LQ F RE ++ L+ E + + L++G ++
Sbjct: 121 LGSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKA 179
Query: 190 ARHFN 194
FN
Sbjct: 180 MTDFN 184
>sp|Q63HI2|PTH_BACCZ Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ZK / E33L)
GN=pth PE=3 SV=1
Length = 186
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y+ TRHN +GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHN-IGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 62 LTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181
Query: 191 RHFNT 195
FN+
Sbjct: 182 NTFNS 186
>sp|B9IZD4|PTH_BACCQ Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain Q1) GN=pth PE=3
SV=1
Length = 186
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y+ TRHN +GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHN-IGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 62 LTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181
Query: 191 RHFNT 195
FN+
Sbjct: 182 NTFNS 186
>sp|Q6MJR3|PTH_BDEBA Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=pth PE=3 SV=1
Length = 187
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 107/187 (57%), Gaps = 11/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
WL VGLGNPG +YK TRHN +GF +D E G KA Q + D PV+ K
Sbjct: 2 WLIVGLGNPGGEYKLTRHN-IGFMAVDFLMEGLGNPPIKNQFKAEIAQAKIKDHPVIFCK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSV--- 135
PQTYMNLSGES PL +YK+PL R++V HD++ P ++++ N GHGGHNG+KS+
Sbjct: 61 PQTYMNLSGESVQPLMGFYKIPLERLIVIHDEIDQPFAQMKIQKNRGHGGHNGIKSISGL 120
Query: 136 ---MNNFR---GIGRPPGQMDP-KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 188
M+ R G+GRP P ++L KF ++ L + + ++ ++ G+ +
Sbjct: 121 MGSMDYTRLRLGVGRPANPNIPVPDYVLGKFTKEEFAQMPDFLNKAGDAVESIILDGIQK 180
Query: 189 SARHFNT 195
++ FNT
Sbjct: 181 ASTKFNT 187
>sp|Q81J96|PTH_BACCR Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=pth PE=3 SV=2
Length = 186
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y+ TRHN +GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHN-IGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 62 LTYMNLSGESIRPLMDYYKIDVEDFVVMYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181
Query: 191 RHFNT 195
FN+
Sbjct: 182 NTFNS 186
>sp|Q6HPW6|PTH_BACHK Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=pth PE=3 SV=1
Length = 186
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y+ TRHN +GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHN-IGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 62 LTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181
Query: 191 RHFNT 195
FN+
Sbjct: 182 NTFNS 186
>sp|Q81VY9|PTH_BACAN Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1
Length = 186
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y+ TRHN +GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHN-IGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 62 LTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181
Query: 191 RHFNT 195
FN+
Sbjct: 182 NTFNS 186
>sp|Q73FF7|PTH_BACC1 Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 10987)
GN=pth PE=3 SV=2
Length = 186
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y+ TRHN +GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHN-IGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 62 LTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPGVNHSIEKAADACEEWLNKPFLQIM 181
Query: 191 RHFNT 195
FN+
Sbjct: 182 NTFNS 186
>sp|A6LPJ5|PTH_CLOB8 Peptidyl-tRNA hydrolase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=pth PE=3 SV=1
Length = 191
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 102/174 (58%), Gaps = 16/174 (9%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGNPG++Y+ TRHN +GF++ID A+ I +N K +G+GF+ V+L K
Sbjct: 2 FLIVGLGNPGNEYENTRHN-IGFKVIDNIAKEYNIEINRQKFKGMYGEGFINGKKVMLLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES + +Y L + +LV +DD+ L G LR+R G GGHNG+KS++ +
Sbjct: 61 PTTYMNLSGESVREVVDFYNLNNDEILVIYDDISLEVGKLRIREKGSAGGHNGIKSIIAH 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKF----NAIARERIDTALQEGVEVLK 179
G+G+P G D +L KF AI E I+ + + E++K
Sbjct: 121 LNSEIFSRIKVGVGQPNG--DLVKHVLGKFTKEETAILSESIEASTKAAAEIIK 172
>sp|B1YGP7|PTH_EXIS2 Peptidyl-tRNA hydrolase OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=pth PE=3 SV=1
Length = 185
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 21 FVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 80
VGLGNPG KY TRHN +GF IDA A+ GI + KA FG G + V+L KP
Sbjct: 4 IVGLGNPGAKYTNTRHN-IGFLAIDALAKEHGIKLTESKFKAVFGTGMIKGERVVLVKPL 62
Query: 81 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 139
TYMNLSGE+ PL +YK+ + VLV +DD+ LP +RLR G GGHNG+KS++ +
Sbjct: 63 TYMNLSGEAVRPLLDFYKIAVEDVLVIYDDLDLPLEKMRLRSKGSAGGHNGVKSLIQHLG 122
Query: 140 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEV 177
G+GRPP + ++L F + + L + V +
Sbjct: 123 TQDIKRLKLGVGRPPAPIQVIDWVLMPFAKSEQTTLQHVLSDSVNI 168
>sp|Q65PG8|PTH_BACLD Peptidyl-tRNA hydrolase OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=pth PE=3 SV=1
Length = 188
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 98/184 (53%), Gaps = 10/184 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
+F GLGNPG Y+ TRHN VGF ID ++ I ++ +G GFV VLL KP
Sbjct: 3 VFAGLGNPGKTYENTRHN-VGFMTIDELSKEWNIPLDKTKFNGQYGIGFVSGKKVLLVKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM--- 136
TYMNLSGE PL YY++P++ + V +DD+ LP G +RLR G GGHNG+KS +
Sbjct: 62 LTYMNLSGECLRPLLDYYEIPVDNLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSTIQHL 121
Query: 137 -----NNFR-GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
N R GIGRP M ++L F I A+++ + + L K E
Sbjct: 122 GTSEFNRIRIGIGRPVNGMKVVDYVLGAFTDEEEPAIKEAVRQSAKACEASLEKPFLEVM 181
Query: 191 RHFN 194
FN
Sbjct: 182 NEFN 185
>sp|Q899I4|PTH_CLOTE Peptidyl-tRNA hydrolase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=pth PE=3 SV=1
Length = 188
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 105/188 (55%), Gaps = 12/188 (6%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
+L VGLGNPG +Y+ TRHN +GFE +D + I + K FG G + + V+L K
Sbjct: 2 FLLVGLGNPGKEYEKTRHN-IGFEAVDKISYEYNIPIKRERFKGVFGDGRISNEKVILLK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
P TYMNLSGES + YY +P+ V+V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 61 PTTYMNLSGESLREIIEYYNIPITNVIVIYDDVDLEVGRLRIRTKGSAGGHNGIKSIIYN 120
Query: 139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
G+G+P Q D + +L KF + I+ L+ E+ ++++G E+
Sbjct: 121 LNSEDFIRLRIGVGKP--QRDMVSHVLGKFAKEDEKNIEEVLKIIPELAYTIINQGPQEA 178
Query: 190 ARHFNTIQ 197
+N +
Sbjct: 179 MNKYNNFR 186
>sp|Q8XHJ8|PTH_CLOPE Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain 13 /
Type A) GN=pth PE=3 SV=1
Length = 188
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 104/186 (55%), Gaps = 12/186 (6%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y+ TRHN +GF++ID A I +N K G+GF+ + V+L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHN-IGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGES LA +YKL + ++V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 62 LTYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
G+G+P + +L KF+ RE I+ + + + ++ ES
Sbjct: 122 GGDKFPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESM 179
Query: 191 RHFNTI 196
FN +
Sbjct: 180 NKFNGV 185
>sp|Q0TMG7|PTH_CLOP1 Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=pth PE=3 SV=1
Length = 188
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 104/186 (55%), Gaps = 12/186 (6%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y+ TRHN +GF++ID A I +N K G+GF+ + V+L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHN-IGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGES LA +YKL + ++V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 62 LTYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
G+G+P + +L KF+ RE I+ + + + ++ ES
Sbjct: 122 GGDKFPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESM 179
Query: 191 RHFNTI 196
FN +
Sbjct: 180 NKFNGV 185
>sp|Q3Z8W2|PTH_DEHE1 Peptidyl-tRNA hydrolase OS=Dehalococcoides ethenogenes (strain 195)
GN=pth PE=3 SV=1
Length = 189
Score = 130 bits (326), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 13/188 (6%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L +GLGNPG +Y G RHN VGF+ + FA+ IS + C + G G + D ++LAKP
Sbjct: 3 LIIGLGNPGKEYSGNRHN-VGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
QTYMNLSG++ L Y L ++V DD+ LP G +RLR G GGHNG+ S++ +
Sbjct: 62 QTYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI 121
Query: 140 R---------GIGRPPGQMDPKAF---LLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
GIG+P + + +L F RE +D A+ E L LL+ GL
Sbjct: 122 GTKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGLD 181
Query: 188 ESARHFNT 195
++ FN+
Sbjct: 182 TASNRFNS 189
>sp|Q5L3U7|PTH_GEOKA Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilus (strain HTA426)
GN=pth PE=3 SV=1
Length = 186
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 100/184 (54%), Gaps = 10/184 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
LFVGLGNPG +Y+ TRHN VGF +ID A+ +S+ T + FG V V L KP
Sbjct: 3 LFVGLGNPGKEYEQTRHN-VGFFVIDELAKRWNVSLKTAKFRGLFGTASVSGEKVALCKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGE PL YY + ++ V+V +DD+ LP G +RLR G GGHNG+KS++++
Sbjct: 62 LTYMNLSGECVRPLMDYYDIAIDDVIVIYDDLDLPPGKIRLRLKGSSGGHNGVKSLIHHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GIGRP G ++L +F + +D A+ + + + +
Sbjct: 122 GTEQFKRIRIGIGRPAGGQPVTDYVLGRFTEEEKPAVDKAVLRAADACEQAVKAPFIQVM 181
Query: 191 RHFN 194
FN
Sbjct: 182 NDFN 185
>sp|A9KR32|PTH_CLOPH Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1
Length = 191
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 10/185 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
++ +GLGNP +Y+ TRHN +GF+ I A+ IS++T KA G+G +G V+LAK
Sbjct: 2 YIIIGLGNPTREYEATRHN-IGFDAITRLADDNNISLDTKKHKAICGKGMIGGEKVILAK 60
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
PQTYMNLSGES L +YK+ ++V +DD+ L G LR+R G GGHNG+K+++ +
Sbjct: 61 PQTYMNLSGESVRELIDFYKVTKEEIIVIYDDISLDVGQLRIRTKGSAGGHNGIKNIIAH 120
Query: 139 F---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
G+G P D ++L +F I AL++ + + +L G +
Sbjct: 121 LGSDEFCRIKIGVGDKPKNWDLADYVLARFPKEEEPAIREALEKVSKACETILRDGAKVA 180
Query: 190 ARHFN 194
FN
Sbjct: 181 MNLFN 185
>sp|C0ZHD7|PTH_BREBN Peptidyl-tRNA hydrolase OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=pth PE=3 SV=1
Length = 189
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 10/188 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
+ +GLGNPG KY+ TRHN GF ID ++ GI + +A G+G + VLL KP
Sbjct: 3 VIIGLGNPGKKYEDTRHN-AGFMAIDKISDKWGIPVTQNKFRALVGEGRIEGEKVLLVKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
QTYMNLSGES + +YKL + ++V +DD+ LP G LRLR G GGHNG+KS++ +
Sbjct: 62 QTYMNLSGESVAEVLKFYKLIPDDLVVIYDDLDLPTGHLRLREKGSAGGHNGIKSMIQHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GI RP ++L F R I A+ + + + +
Sbjct: 122 GTQEFKRIKVGISRPEPGRSVSDYVLNTFPVAERADIQEAVSLAADACAMWTRESFLKVM 181
Query: 191 RHFNTIQK 198
HFN+++K
Sbjct: 182 NHFNSLKK 189
>sp|P37470|PTH_BACSU Peptidyl-tRNA hydrolase OS=Bacillus subtilis (strain 168) GN=spoVC
PE=3 SV=1
Length = 188
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 96/184 (52%), Gaps = 10/184 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
+ GLGNPG Y+ TRHN VGF +ID A+ I +N +G GFV VLL KP
Sbjct: 3 VIAGLGNPGKNYENTRHN-VGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
TYMNLSGE PL YY + + V +DD+ LP G +RLR G GGHNG+KS++ +
Sbjct: 62 LTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL 121
Query: 140 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
GIGRP M ++L F I+ A+ + V+ + LSK E
Sbjct: 122 GTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVM 181
Query: 191 RHFN 194
FN
Sbjct: 182 NEFN 185
>sp|A4J0Q6|PTH_DESRM Peptidyl-tRNA hydrolase OS=Desulfotomaculum reducens (strain MI-1)
GN=pth PE=3 SV=1
Length = 206
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 104/181 (57%), Gaps = 15/181 (8%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
L VGLGNPG +Y TRHN +GF +ID A+ +S KA Q +G V+LAKP
Sbjct: 3 LIVGLGNPGTEYAKTRHN-IGFMVIDRLADESRVSTEKNQHKAQICQITIGSEKVILAKP 61
Query: 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
QTYMNLSG+S L +YKL + + V DDM LP GVLR+R NG GG GLK+++
Sbjct: 62 QTYMNLSGQSVVALMNWYKLSPDELFVITDDMDLPPGVLRIRKNGSAGGQRGLKNIIELL 121
Query: 140 ---------RGIGRPP-GQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
GIGRP G +D +L K + E I+ A+Q VE +K+ + +G T++
Sbjct: 122 GTQQFPRMRVGIGRPEHGAVD---HVLGKISEAEAELINPAIQTAVEAVKVWVLEG-TQA 177
Query: 190 A 190
A
Sbjct: 178 A 178
>sp|Q1B425|PTH_MYCSS Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain MCS) GN=pth
PE=3 SV=1
Length = 192
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 105/183 (57%), Gaps = 13/183 (7%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
+A P L VGLGNPG Y TRHN VGF + D A G H K A G +
Sbjct: 1 MAEPLLVVGLGNPGPNYAKTRHN-VGFVVADLLAGRIGSGFKA-HRKSGADIATGRLAGR 58
Query: 73 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGL 132
V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G +RL+ GG GHNGL
Sbjct: 59 AVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGL 118
Query: 133 KSV-----MNNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 183
KSV +F+ G+GRPPG+ D ++L+ F ++ R + T ++ + +LL++
Sbjct: 119 KSVAAALGTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIA 178
Query: 184 KGL 186
+GL
Sbjct: 179 QGL 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,631,208
Number of Sequences: 539616
Number of extensions: 3545898
Number of successful extensions: 8084
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6167
Number of HSP's gapped (non-prelim): 738
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)