Query 028433
Match_columns 209
No_of_seqs 216 out of 1047
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 18:58:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hoy_A PTH, peptidyl-tRNA hydr 100.0 1.3E-74 4.3E-79 488.6 18.2 182 16-198 2-192 (193)
2 2pth_A Peptidyl-tRNA hydrolase 100.0 2.6E-74 8.9E-79 486.7 18.7 178 18-196 2-190 (193)
3 2z2i_A PTH, peptidyl-tRNA hydr 100.0 1.4E-74 4.8E-79 487.6 16.3 179 16-195 2-190 (191)
4 1ryb_A CRS2; alpha-beta, hydro 100.0 3.5E-74 1.2E-78 489.6 17.9 181 15-196 14-204 (205)
5 4fyj_A PTH, peptidyl-tRNA hydr 100.0 1.5E-73 5.1E-78 483.9 19.0 179 17-196 9-198 (199)
6 3v2i_A PTH, peptidyl-tRNA hydr 100.0 9.1E-73 3.1E-77 485.8 18.9 180 17-197 22-221 (222)
7 3nea_A PTH, peptidyl-tRNA hydr 100.0 2.5E-73 8.5E-78 484.9 14.4 178 15-193 20-207 (207)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 1.2E-74 4.2E-79 489.0 0.0 180 17-197 3-193 (194)
9 3pu6_A Uncharacterized protein 69.7 4.3 0.00015 32.1 3.9 29 17-50 3-31 (157)
10 1cfz_A Hydrogenase 2 maturatio 66.9 5.1 0.00017 31.6 3.8 128 18-178 2-149 (162)
11 2e85_A Hydrogenase 3 maturatio 64.2 6.2 0.00021 31.1 3.8 92 17-140 4-105 (159)
12 2jva_A Peptidyl-tRNA hydrolase 61.2 3.5 0.00012 31.1 1.7 26 105-130 2-29 (108)
13 4dh9_Y YAEJ; ribosome, YAEJ, r 55.3 3 0.0001 32.9 0.5 26 105-130 2-29 (140)
14 2ba3_A NIKA; dimer, bacterial 54.0 7.9 0.00027 24.5 2.3 41 142-182 4-45 (51)
15 2ea9_A JW2626, hypothetical pr 47.0 20 0.00067 27.0 3.8 32 152-184 34-65 (105)
16 2inw_A Putative structural pro 45.9 26 0.00087 27.4 4.4 32 152-184 48-79 (133)
17 3utn_X Thiosulfate sulfurtrans 43.7 19 0.00065 31.6 3.9 36 79-114 90-125 (327)
18 4gib_A Beta-phosphoglucomutase 40.8 25 0.00084 28.0 3.8 74 73-172 165-242 (250)
19 1am7_A Lysozyme; glycosidase, 39.2 31 0.0011 27.6 4.1 40 156-195 83-122 (158)
20 4hbl_A Transcriptional regulat 36.0 42 0.0014 24.6 4.2 31 153-183 118-148 (149)
21 2cqq_A RSGI RUH-037, DNAJ homo 34.4 70 0.0024 22.0 4.9 40 157-196 9-55 (72)
22 2l32_A Small archaeal modifier 31.9 33 0.0011 23.5 2.8 31 87-117 20-50 (74)
23 2llk_A Cyclin-D-binding MYB-li 31.3 1E+02 0.0035 21.2 5.3 40 156-195 23-65 (73)
24 3kp7_A Transcriptional regulat 31.1 60 0.0021 23.6 4.4 30 153-182 119-148 (151)
25 3ddh_A Putative haloacid dehal 30.5 32 0.0011 25.8 2.8 29 86-114 159-189 (234)
26 4fhr_A Flagellar motor switch 30.4 91 0.0031 24.8 5.6 37 136-180 85-121 (187)
27 1lj9_A Transcriptional regulat 29.9 60 0.0021 23.2 4.2 32 152-183 108-139 (144)
28 3fzq_A Putative hydrolase; YP_ 29.2 34 0.0011 27.1 2.8 26 86-111 201-226 (274)
29 3mpo_A Predicted hydrolase of 28.6 29 0.001 27.8 2.4 25 86-110 198-222 (279)
30 3r4c_A Hydrolase, haloacid deh 28.6 33 0.0011 27.3 2.6 25 87-111 196-220 (268)
31 3deu_A Transcriptional regulat 27.9 38 0.0013 25.6 2.8 32 152-183 133-164 (166)
32 3mtn_B UBA80, ubcep1, ubiquiti 27.9 45 0.0015 22.1 2.9 39 93-131 33-85 (85)
33 3dnp_A Stress response protein 26.7 36 0.0012 27.4 2.6 25 86-110 203-227 (290)
34 3dao_A Putative phosphatse; st 26.6 36 0.0012 27.7 2.6 25 86-110 212-236 (283)
35 2pq0_A Hypothetical conserved 26.3 32 0.0011 27.4 2.2 24 87-110 185-208 (258)
36 4dw8_A Haloacid dehalogenase-l 25.9 35 0.0012 27.3 2.4 24 87-110 199-222 (279)
37 2zet_C Melanophilin; complex, 25.9 51 0.0017 26.0 3.3 21 156-176 14-34 (153)
38 3pgv_A Haloacid dehalogenase-l 25.4 40 0.0014 27.4 2.6 26 86-111 210-235 (285)
39 3l7y_A Putative uncharacterize 25.4 39 0.0013 27.8 2.6 25 86-110 229-253 (304)
40 3b64_A Macrophage migration in 24.6 51 0.0018 23.5 2.9 23 93-116 84-106 (112)
41 2k9i_A Plasmid PRN1, complete 24.4 63 0.0021 19.9 2.9 30 143-173 1-30 (55)
42 1c8b_A Spore protease; novel f 24.1 55 0.0019 29.7 3.5 114 16-146 112-244 (371)
43 1j26_A Immature colon carcinom 23.5 42 0.0014 25.2 2.2 21 110-130 14-36 (112)
44 2x4d_A HLHPP, phospholysine ph 21.0 55 0.0019 25.3 2.6 26 86-111 192-217 (271)
45 2cjj_A Radialis; plant develop 20.9 1.2E+02 0.0041 21.9 4.2 39 157-195 9-55 (93)
46 3bpv_A Transcriptional regulat 20.0 82 0.0028 22.2 3.2 28 152-179 108-135 (138)
No 1
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=1.3e-74 Score=488.62 Aligned_cols=182 Identities=33% Similarity=0.625 Sum_probs=175.3
Q ss_pred CCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHH
Q 028433 16 ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 94 (209)
Q Consensus 16 ~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~ 94 (209)
+.++|||||||||++|++|||| |||+++|+||+++++++++ +++.++++++.+.+++++|+||+||||+||+||++++
T Consensus 2 s~ikLIVGLGNPG~~Y~~TRHN-iGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~ 80 (193)
T 4hoy_A 2 SNISLIVGLGNPGSEYAQTRHN-AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFS 80 (193)
T ss_dssp CCCCEEEECCCCSTTTTTBGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHH
T ss_pred CCceEEEEcCCCchhhCcCccc-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHH
Confidence 4578999999999999999999 9999999999999999855 5788999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC--------CCCCCCCCCCccccccCcCCHHHHHH
Q 028433 95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR--------GIGRPPGQMDPKAFLLQKFNAIARER 166 (209)
Q Consensus 95 ~~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg--------GIGrP~~~~~v~~yVLs~fs~~E~~~ 166 (209)
+||++++++|||||||||||+|++|+|++||+|||||||||+++|| |||||+++.++++|||++|+++|++.
T Consensus 81 ~~~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~lgtdf~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 160 (193)
T 4hoy_A 81 KFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSL 160 (193)
T ss_dssp HHTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHHCSCSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHH
T ss_pred HHcCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHhccccceEEEeeCCCCCCCCcccccCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999988899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhhchhh
Q 028433 167 IDTALQEGVEVLKLLLSKGLTESARHFNTIQK 198 (209)
Q Consensus 167 l~~~i~~~~~al~~~l~~~~~~amn~~N~~~~ 198 (209)
++++++.|+++++.|+++++++|||+||++++
T Consensus 161 l~~~i~~a~~~i~~~~~~~~~~amn~~n~~kp 192 (193)
T 4hoy_A 161 MDGAIDHALSKVKLLVQGQVPQAMNQINAYKP 192 (193)
T ss_dssp HHHHHHHHHHTHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence 99999999999999999999999999999765
No 2
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=2.6e-74 Score=486.70 Aligned_cols=178 Identities=33% Similarity=0.605 Sum_probs=171.2
Q ss_pred CeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHh
Q 028433 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 96 (209)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~ 96 (209)
|+|||||||||++|++|||| ||||++|+||++++++++ +.++++.++++.+.+++|+|+||+||||+||+||+++++|
T Consensus 2 m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~ 80 (193)
T 2pth_A 2 IKLIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF 80 (193)
T ss_dssp CCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred cEEEEEECCCCcccccCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHH
Confidence 68999999999999999999 999999999999999986 5678999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----------CCCCCCCCCCccccccCcCCHHHHHH
Q 028433 97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARER 166 (209)
Q Consensus 97 ~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----------GIGrP~~~~~v~~yVLs~fs~~E~~~ 166 (209)
|||++++|||||||||||+|++|+|.+||+|||||||||+++|| |||||+.+.++++|||++|+++|++.
T Consensus 81 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 160 (193)
T 2pth_A 81 FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL 160 (193)
T ss_dssp HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred hCCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999998 99999644578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 028433 167 IDTALQEGVEVLKLLLSKGLTESARHFNTI 196 (209)
Q Consensus 167 l~~~i~~~~~al~~~l~~~~~~amn~~N~~ 196 (209)
|+++++.|+++++.|+++++++|||+||++
T Consensus 161 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 190 (193)
T 2pth_A 161 IDEAIDEAARCTEMWFTDGLTKATNRLHAF 190 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhCc
Confidence 999999999999999999999999999985
No 3
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=1.4e-74 Score=487.63 Aligned_cols=179 Identities=40% Similarity=0.766 Sum_probs=161.1
Q ss_pred CCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHH
Q 028433 16 ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 94 (209)
Q Consensus 16 ~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~ 94 (209)
..|+|||||||||++|++|||| ||||++|+||+++++++++ +++++.++++.+.+++|+|+||+||||+||+||++++
T Consensus 2 ~~m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~ 80 (191)
T 2z2i_A 2 AEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLA 80 (191)
T ss_dssp CSCEEEEECCCCSHHHHTBGGG-HHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHH
T ss_pred CccEEEEEECCCCchhccCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHH
Confidence 3579999999999999999999 9999999999999998865 4688999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCCCCCCCccccccCcCCHHHHH
Q 028433 95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIARE 165 (209)
Q Consensus 95 ~~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP~~~~~v~~yVLs~fs~~E~~ 165 (209)
+||||++++|||||||||||+|++|+|.+||+|||||||||+++|| |||||+++.++++|||++|+++|++
T Consensus 81 ~~yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lgt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 160 (191)
T 2z2i_A 81 KFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERA 160 (191)
T ss_dssp HHTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHTCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHT
T ss_pred HHhCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHhCCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999965567999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHhhhc
Q 028433 166 RIDTALQEGVEVLKLLLSKGLTESARHFNT 195 (209)
Q Consensus 166 ~l~~~i~~~~~al~~~l~~~~~~amn~~N~ 195 (209)
.|+++++.|+++++.|+++++++|||+||+
T Consensus 161 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~ 190 (191)
T 2z2i_A 161 EVPTICEQAADATELLIEQGMEPAQNRVHA 190 (191)
T ss_dssp THHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 999999999999999999999999999995
No 4
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=3.5e-74 Score=489.64 Aligned_cols=181 Identities=56% Similarity=1.049 Sum_probs=168.8
Q ss_pred CCCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHH
Q 028433 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 94 (209)
Q Consensus 15 ~~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~ 94 (209)
...++|||||||||++|++|||| ||||++|+||+++++++++.+++++++++.+.+++|+|+||+||||+||+||++++
T Consensus 14 ~~~~~LIVGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~ 92 (205)
T 1ryb_A 14 EYTPWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA 92 (205)
T ss_dssp -CCCEEEEECCCCSGGGTTBGGG-HHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred CCCCEEEEEECCCChhhccCchH-HHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence 45689999999999999999999 99999999999999998877899999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhc-C---------CCCCCCCCCCccccccCcCCHHHH
Q 028433 95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF-R---------GIGRPPGQMDPKAFLLQKFNAIAR 164 (209)
Q Consensus 95 ~~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~L-g---------GIGrP~~~~~v~~yVLs~fs~~E~ 164 (209)
+||||++++|||||||||||+|++|+|.+||+|||||||||+++| | |||||+.+.++++|||++|+++|+
T Consensus 93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~ 172 (205)
T 1ryb_A 93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172 (205)
T ss_dssp HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence 999999999999999999999999999999999999999999999 8 999997656799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 028433 165 ERIDTALQEGVEVLKLLLSKGLTESARHFNTI 196 (209)
Q Consensus 165 ~~l~~~i~~~~~al~~~l~~~~~~amn~~N~~ 196 (209)
+.|+++++.|++|++.|+++++++|||+||++
T Consensus 173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 204 (205)
T 1ryb_A 173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNLV 204 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----CCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 99999999999999999999999999999974
No 5
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.5e-73 Score=483.94 Aligned_cols=179 Identities=34% Similarity=0.587 Sum_probs=172.2
Q ss_pred CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHH
Q 028433 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 95 (209)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~ 95 (209)
...|||||||||++|+.|||| ||||++|+||++++.++.+ .+|.++++++.+++++++|+||+||||+||+||+++++
T Consensus 9 ~~~lIvGLGNPG~~Y~~TRHN-vGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~ 87 (199)
T 4fyj_A 9 AVQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAG 87 (199)
T ss_dssp CCCEEEECCCCSGGGTTCGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred eeeEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHH
Confidence 346999999999999999999 9999999999999998764 57889999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----------CCCCCCCCCCccccccCcCCHHHHH
Q 028433 96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARE 165 (209)
Q Consensus 96 ~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----------GIGrP~~~~~v~~yVLs~fs~~E~~ 165 (209)
||+|++++|||||||||||+|++|+|++||+|||||||||+++|| |||||+.+.++++|||++|+++|++
T Consensus 88 ~yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~Lgt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 167 (199)
T 4fyj_A 88 FFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 167 (199)
T ss_dssp HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHCSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHH
T ss_pred HhCCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHhCCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHH
Confidence 999999999999999999999999999999999999999999999 9999988789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 028433 166 RIDTALQEGVEVLKLLLSKGLTESARHFNTI 196 (209)
Q Consensus 166 ~l~~~i~~~~~al~~~l~~~~~~amn~~N~~ 196 (209)
.|+++++.|+++++.|+++++++|||+||++
T Consensus 168 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 198 (199)
T 4fyj_A 168 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ 198 (199)
T ss_dssp HHHHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 9999999999999999999999999999974
No 6
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=9.1e-73 Score=485.75 Aligned_cols=180 Identities=34% Similarity=0.595 Sum_probs=167.3
Q ss_pred CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHH
Q 028433 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 95 (209)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~ 95 (209)
+|+|||||||||++|+.|||| ||||++|+||++++.++.+. +|+++++++.+.+++|+|+||+||||+||++|+++++
T Consensus 22 ~~~LIVGLGNPG~~Y~~TRHN-iGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~ 100 (222)
T 3v2i_A 22 MIKLIVGLGNPGAEYTATRHN-AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH 100 (222)
T ss_dssp CCCEEEECCCCSGGGTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence 568999999999999999999 99999999999999998654 6889999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCC----------CCCCCcccccc
Q 028433 96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRP----------PGQMDPKAFLL 156 (209)
Q Consensus 96 ~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP----------~~~~~v~~yVL 156 (209)
||||++++|||||||||||+|++|+|.+||+|||||||||+++|| ||||| +.+.++++|||
T Consensus 101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~Lgt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yVL 180 (222)
T 3v2i_A 101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHLSSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVL 180 (222)
T ss_dssp HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHHTCCCSEEEEEECCCTTTTCC---------CHHHHTT
T ss_pred HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHhCCCCeEEEEEEcCCCcccccccccCCCCCcHHHHhc
Confidence 999999999999999999999999999999999999999999999 99999 55678999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhchh
Q 028433 157 QKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 197 (209)
Q Consensus 157 s~fs~~E~~~l~~~i~~~~~al~~~l~~~~~~amn~~N~~~ 197 (209)
++|+++|++.|+++++.|+++++.|+++++++|||+||+..
T Consensus 181 ~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~~ 221 (222)
T 3v2i_A 181 KPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRNG 221 (222)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC----
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999753
No 7
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=2.5e-73 Score=484.88 Aligned_cols=178 Identities=31% Similarity=0.570 Sum_probs=170.8
Q ss_pred CCCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCchhhhchhhHHHH
Q 028433 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPL 93 (209)
Q Consensus 15 ~~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~ 93 (209)
+..|+|||||||||++|++|||| ||||++|+||++++.++.+. +|+++++++.+.+++|+|+||+||||+||++|+++
T Consensus 20 m~~~~LIVGLGNPG~~Y~~TRHN-vGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~ 98 (207)
T 3nea_A 20 MPKIKMIIGLGNIGKEYQDTRHN-VGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKV 98 (207)
T ss_dssp -CCCCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHH
T ss_pred cCCcEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHH
Confidence 44689999999999999999999 99999999999999998765 78899999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCCCCCCCccccccCcCCHHHH
Q 028433 94 AAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIAR 164 (209)
Q Consensus 94 ~~~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP~~~~~v~~yVLs~fs~~E~ 164 (209)
++||||++++|||||||||||+|++|+|++||+|||||||||+++|| |||||+.+.++++|||++|+++|+
T Consensus 99 ~~~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~Lgt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~ 178 (207)
T 3nea_A 99 ANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQK 178 (207)
T ss_dssp HHHHTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHTCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHH
T ss_pred HHHhCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999 999998778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHhh
Q 028433 165 ERIDTALQEGVEVLKLLLSKGLTESARHF 193 (209)
Q Consensus 165 ~~l~~~i~~~~~al~~~l~~~~~~amn~~ 193 (209)
+.|+++++.|+++++.|+++++++|||++
T Consensus 179 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~ 207 (207)
T 3nea_A 179 KDIDSAIDNGICFLDDIINYKLEPVMQKL 207 (207)
T ss_dssp HHHHHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence 99999999999999999999999999874
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.2e-74 Score=488.96 Aligned_cols=180 Identities=33% Similarity=0.585 Sum_probs=171.0
Q ss_pred CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHH
Q 028433 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 95 (209)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~ 95 (209)
+|+|||||||||++|++|||| ||||++|+||+++++++. +.+++++++++.+.+++|+|+||+||||+||+||+++++
T Consensus 3 mm~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~ 81 (194)
T 4fno_A 3 AVQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAG 81 (194)
Confidence 478999999999999999999 999999999999999876 457889999888889999999999999999999999999
Q ss_pred hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----------CCCCCCCCCCccccccCcCCHHHHH
Q 028433 96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARE 165 (209)
Q Consensus 96 ~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----------GIGrP~~~~~v~~yVLs~fs~~E~~ 165 (209)
||||++++|||||||||||+|++|+|.+||+|||||||||+++|| |||||+.+.++++|||++|+++|++
T Consensus 82 fyki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~Lgt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 161 (194)
T 4fno_A 82 FFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 161 (194)
Confidence 999999999999999999999999999999999999999999998 9999965567999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHhhhchh
Q 028433 166 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 197 (209)
Q Consensus 166 ~l~~~i~~~~~al~~~l~~~~~~amn~~N~~~ 197 (209)
.|+++++.|+++++.|+++++++|||+||+.+
T Consensus 162 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~k 193 (194)
T 4fno_A 162 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQK 193 (194)
Confidence 99999999999999999999999999999743
No 9
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=69.74 E-value=4.3 Score=32.06 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=21.6
Q ss_pred CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHH
Q 028433 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAES 50 (209)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~ 50 (209)
+..||+|+|||=-. -= -+|..++++|++.
T Consensus 3 m~ilVlGiGN~L~g----DD-G~G~~v~~~L~~~ 31 (157)
T 3pu6_A 3 LKKVLLCVGNELRG----DD-GVAIALGRLVEEQ 31 (157)
T ss_dssp CCEEEEEECCTTBG----GG-GHHHHHHHHHHHH
T ss_pred CCEEEEEECCcccc----cc-cHHHHHHHHHHhh
Confidence 45789999999321 22 3999999999843
No 10
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=66.93 E-value=5.1 Score=31.61 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=65.6
Q ss_pred CeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHhc
Q 028433 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 97 (209)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ 97 (209)
+.+|+|+|||=-. -== +|..++++|.+++..+-. .. . +.+. +.-||+- ..++
T Consensus 2 ~ilVlGiGN~l~g----DDG-~G~~v~~~L~~~~~~p~~---v~-v-----id~g-------t~~~~l~-----~~l~-- 53 (162)
T 1cfz_A 2 RILVLGVGNILLT----DEA-IGVRIVEALEQRYILPDY---VE-I-----LDGG-------TAGMELL-----GDMA-- 53 (162)
T ss_dssp CEEEEEESCTTBG----GGG-HHHHHHHHHHHHEECCTT---EE-E-----EEEE-------TCCGGGH-----HHHS--
T ss_pred CEEEEEECCcccc----ccc-HHHHHHHHHHhhCCCCCC---eE-E-----EECC-------CCHHHHH-----HHHh--
Confidence 4689999999321 223 999999999987643210 00 0 0000 1112221 1111
Q ss_pred CCCCCceEEEee---cCCCCCceEEEecC--------CCCCCCC-chHHHHHhcCCCCCCCCC--------CCccccccC
Q 028433 98 KLPLNRVLVFHD---DMGLPCGVLRLRHN--------GGHGGHN-GLKSVMNNFRGIGRPPGQ--------MDPKAFLLQ 157 (209)
Q Consensus 98 ki~~~~ilVvhD---Dldlp~G~irlk~g--------Gs~gGHN-GLkSIi~~LgGIGrP~~~--------~~v~~yVLs 157 (209)
-.+.+||.| +.+.++|+++.-.. .+...|+ |+.++++.+.=.|+.|.+ .++ ++ -.
T Consensus 54 ---~~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi~p~~~-~~-g~ 128 (162)
T 1cfz_A 54 ---NRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVIPESL-EP-HI 128 (162)
T ss_dssp ---SCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEECCSCC-CS-BS
T ss_pred ---CCCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEEEEeEc-CC-CC
Confidence 136777778 56889999886321 1233455 666666665422332211 122 33 23
Q ss_pred cCCHHHHHHHHHHHHHHHHHH
Q 028433 158 KFNAIARERIDTALQEGVEVL 178 (209)
Q Consensus 158 ~fs~~E~~~l~~~i~~~~~al 178 (209)
..|++=++.++++++.+.+.+
T Consensus 129 ~LS~~v~~av~~a~~~i~~~l 149 (162)
T 1cfz_A 129 GLTPTVEAMIEPALEQVLAAL 149 (162)
T ss_dssp SCCHHHHTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 456555555555544444433
No 11
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=64.19 E-value=6.2 Score=31.08 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeC-CchhhhchhhHHHHHH
Q 028433 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP-QTYMNLSGESTGPLAA 95 (209)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP-~TyMNlSG~aV~~~~~ 95 (209)
+..+|+|+|||=.. -== +|..++++|.+.+. . . +.++-= +.-+|+- ..+..
T Consensus 4 M~~lVlGiGN~l~g----DDG-~G~~v~~~L~~~~~---~--~--------------v~vid~gt~~~~l~----~~l~~ 55 (159)
T 2e85_A 4 VTDVLLCVGNSMMG----DDG-AGPLLAEKCAAAPK---G--N--------------WVVIDGGSAPENDI----VAIRE 55 (159)
T ss_dssp CCEEEEEECCGGGG----GGG-HHHHHHHHHHHSCC---T--T--------------CEEEECTTCSGGGH----HHHHH
T ss_pred CCEEEEEECCcccc----ccc-HHHHHHHHHhhhCC---C--C--------------eEEEECCCCHHHHH----HHHhc
Confidence 34699999999321 223 99999999987531 0 0 111110 1123332 12222
Q ss_pred hcCCCCCceEEEee--cCCCCCceEEEec------CCCCCCCC-chHHHHHhcC
Q 028433 96 YYKLPLNRVLVFHD--DMGLPCGVLRLRH------NGGHGGHN-GLKSVMNNFR 140 (209)
Q Consensus 96 ~~ki~~~~ilVvhD--Dldlp~G~irlk~------gGs~gGHN-GLkSIi~~Lg 140 (209)
. .+ +.+||.| +.+.++|+++.-. .-+...|+ |+..+++.|.
T Consensus 56 ~---~~-d~lIiVDA~~~g~~PGti~~~~~~~l~~~~~~s~H~~~l~~~L~~l~ 105 (159)
T 2e85_A 56 L---RP-TRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK 105 (159)
T ss_dssp H---CC-SEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHH
T ss_pred C---CC-CEEEEEEeCCCCCCCCEEEEechhHcccccCCCCCcCCHHHHHHHHh
Confidence 2 12 4556667 4678899998532 12233465 8998888875
No 12
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=61.24 E-value=3.5 Score=31.15 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=21.5
Q ss_pred EEEeecCCCCCceEEEe--cCCCCCCCC
Q 028433 105 LVFHDDMGLPCGVLRLR--HNGGHGGHN 130 (209)
Q Consensus 105 lVvhDDldlp~G~irlk--~gGs~gGHN 130 (209)
|.|.+++++|...++++ +.+|+||+|
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQn 29 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQN 29 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSS
T ss_pred cccccccccChHHEEEEEEECCCCCCCC
Confidence 55778899999988887 678899987
No 13
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=55.31 E-value=3 Score=32.91 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=21.7
Q ss_pred EEEeecCCCCCceEEEe--cCCCCCCCC
Q 028433 105 LVFHDDMGLPCGVLRLR--HNGGHGGHN 130 (209)
Q Consensus 105 lVvhDDldlp~G~irlk--~gGs~gGHN 130 (209)
|.|.+++++|...+++. ..+|+||+|
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQn 29 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQH 29 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHH
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCc
Confidence 56789999999888887 678899987
No 14
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=53.96 E-value=7.9 Score=24.46 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=25.3
Q ss_pred CCCCCCCCCccc-cccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 028433 142 IGRPPGQMDPKA-FLLQKFNAIARERIDTALQEGVEVLKLLL 182 (209)
Q Consensus 142 IGrP~~~~~v~~-yVLs~fs~~E~~~l~~~i~~~~~al~~~l 182 (209)
.|||.+.....+ .+--+++++|.+.|++....+--.+..|+
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~g~s~Seyi 45 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDSGLTVSAYI 45 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHhCCCHHHHH
Confidence 588875433333 44458999999999876655433334443
No 15
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=46.98 E-value=20 Score=27.01 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=27.4
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 028433 152 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 184 (209)
Q Consensus 152 ~~yVLs~fs~~E~~~l~~~i~~~~~al~~~l~~ 184 (209)
++++ +.||++|...|+++++...+-+|..+..
T Consensus 34 Agi~-G~Fs~~~~~~Ld~aFP~~ikqlE~mL~s 65 (105)
T 2ea9_A 34 ASIT-GKFSDAECPKLDVVFPHFISQIESMLTT 65 (105)
T ss_dssp EEEE-SCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCee-EecCHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 3444 8999999999999999999999888763
No 16
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=45.88 E-value=26 Score=27.37 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=27.3
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 028433 152 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 184 (209)
Q Consensus 152 ~~yVLs~fs~~E~~~l~~~i~~~~~al~~~l~~ 184 (209)
+.++ +.||++|...|+++++...+-+|..+..
T Consensus 48 Agi~-G~Fs~~~~~~Ld~aFP~~ikQlE~mL~s 79 (133)
T 2inw_A 48 AGIR-GRFSDVDAYHLDQAFPLLMKQLELMLTG 79 (133)
T ss_dssp EEEE-SCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCee-EecCHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 3444 8999999999999999999999888763
No 17
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=43.70 E-value=19 Score=31.55 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=29.7
Q ss_pred CCchhhhchhhHHHHHHhcCCCCCceEEEeecCCCC
Q 028433 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLP 114 (209)
Q Consensus 79 P~TyMNlSG~aV~~~~~~~ki~~~~ilVvhDDldlp 114 (209)
|...|=-|-+...++++..+|..++.||||||-+.-
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 445566677888899999999999999999997653
No 18
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=40.81 E-value=25 Score=28.03 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=43.8
Q ss_pred eEEEEeCCchhhhchhhHHHHHHhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----CCCCCCCC
Q 028433 73 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----GIGRPPGQ 148 (209)
Q Consensus 73 ~v~L~KP~TyMNlSG~aV~~~~~~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----GIGrP~~~ 148 (209)
.+-..||.. +....+++.++++|+++++|=|.. .+ ++. ....| ||+.+..
T Consensus 165 ~~~~~KP~p------~~~~~a~~~lg~~p~e~l~VGDs~---~D---------------i~a-A~~aG~~~i~v~~~~~- 218 (250)
T 4gib_A 165 KCKNNKPHP------EIFLMSAKGLNVNPQNCIGIEDAS---AG---------------IDA-INSANMFSVGVGNYEN- 218 (250)
T ss_dssp GCCSCTTSS------HHHHHHHHHHTCCGGGEEEEESSH---HH---------------HHH-HHHTTCEEEEESCTTT-
T ss_pred ccCCCCCcH------HHHHHHHHHhCCChHHeEEECCCH---HH---------------HHH-HHHcCCEEEEECChhH-
Confidence 344456632 455677888899999999887742 11 111 12233 7776543
Q ss_pred CCccccccCcCCHHHHHHHHHHHH
Q 028433 149 MDPKAFLLQKFNAIARERIDTALQ 172 (209)
Q Consensus 149 ~~v~~yVLs~fs~~E~~~l~~~i~ 172 (209)
..-+|||...+++-..+.|.+.++
T Consensus 219 ~~~ad~vi~~l~eL~~~~i~~~~n 242 (250)
T 4gib_A 219 LKKANLVVDSTNQLKFEYIQEKYN 242 (250)
T ss_dssp TTTSSEEESSGGGCCHHHHHHHHH
T ss_pred hccCCEEECChHhCCHHHHHHHHH
Confidence 234699999886554455544443
No 19
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=39.20 E-value=31 Score=27.58 Aligned_cols=40 Identities=8% Similarity=0.182 Sum_probs=31.3
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhc
Q 028433 156 LQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 195 (209)
Q Consensus 156 Ls~fs~~E~~~l~~~i~~~~~al~~~l~~~~~~amn~~N~ 195 (209)
|..|+|+-++.+--.+-+-..++..+..++++.||+++..
T Consensus 83 l~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~ 122 (158)
T 1am7_A 83 LKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSN 122 (158)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhcc
Confidence 6789999999886544444557888888999999988764
No 20
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=36.02 E-value=42 Score=24.57 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.0
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 028433 153 AFLLQKFNAIARERIDTALQEGVEVLKLLLS 183 (209)
Q Consensus 153 ~yVLs~fs~~E~~~l~~~i~~~~~al~~~l~ 183 (209)
+++++.|+++|++.+...+.+..+.++.+.+
T Consensus 118 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 148 (149)
T 4hbl_A 118 SCLPQEFDTTEYDETKYVFEELEQTLKHLIE 148 (149)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4588999999999999999988888876643
No 21
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=34.45 E-value=70 Score=21.95 Aligned_cols=40 Identities=8% Similarity=0.131 Sum_probs=28.7
Q ss_pred CcCCHHHHHHHHHHHHHH-------HHHHHHHHhcCHHHHHHhhhch
Q 028433 157 QKFNAIARERIDTALQEG-------VEVLKLLLSKGLTESARHFNTI 196 (209)
Q Consensus 157 s~fs~~E~~~l~~~i~~~-------~~al~~~l~~~~~~amn~~N~~ 196 (209)
+.+|.+|.+.|++++... .+.|...+....+.+.++|+.-
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L 55 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 579999999999887664 4445444556677777777653
No 22
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=31.91 E-value=33 Score=23.55 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=27.7
Q ss_pred hhhHHHHHHhcCCCCCceEEEeecCCCCCce
Q 028433 87 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 117 (209)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVvhDDldlp~G~ 117 (209)
|..|+.+++.++++++.++|+.+.--+|...
T Consensus 20 g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 20 DGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp TCSHHHHHHTTCCCSSCCCEECCCCCCCTTS
T ss_pred CCcHHHHHHHcCCCcceEEEEECCEECCHHH
Confidence 5689999999999999999999988888776
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=31.28 E-value=1e+02 Score=21.22 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=25.1
Q ss_pred cCcCCHHHHHHHHHHHHHH---HHHHHHHHhcCHHHHHHhhhc
Q 028433 156 LQKFNAIARERIDTALQEG---VEVLKLLLSKGLTESARHFNT 195 (209)
Q Consensus 156 Ls~fs~~E~~~l~~~i~~~---~~al~~~l~~~~~~amn~~N~ 195 (209)
-++||+||-+.|.+++..- ...|...+...-..+.++++.
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~ 65 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRL 65 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4799999999887776652 222222224456666666664
No 24
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=31.11 E-value=60 Score=23.59 Aligned_cols=30 Identities=10% Similarity=0.064 Sum_probs=22.3
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 028433 153 AFLLQKFNAIARERIDTALQEGVEVLKLLL 182 (209)
Q Consensus 153 ~yVLs~fs~~E~~~l~~~i~~~~~al~~~l 182 (209)
+-+++.++++|++.+...+.+..+.++.+.
T Consensus 119 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 148 (151)
T 3kp7_A 119 SDMTSDFDSKEIEKVRQVLEIIDYRIQSYT 148 (151)
T ss_dssp HHTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888777777666554
No 25
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=30.48 E-value=32 Score=25.76 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=26.0
Q ss_pred chhhHHHHHHhcCCCCCceEEEeecC--CCC
Q 028433 86 SGESTGPLAAYYKLPLNRVLVFHDDM--GLP 114 (209)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVvhDDl--dlp 114 (209)
++.++..+++.++++++++++|-|.+ |+.
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~ 189 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMVGNSFKSDIQ 189 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCCCCCCH
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCcHHHhH
Confidence 68889999999999999999999996 665
No 26
>4fhr_A Flagellar motor switch protein FLIM; motor protein; 1.93A {Thermotoga maritima} PDB: 3soh_A 2hp7_A
Probab=30.45 E-value=91 Score=24.81 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=27.2
Q ss_pred HHhcCCCCCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHH
Q 028433 136 MNNFRGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKL 180 (209)
Q Consensus 136 i~~LgGIGrP~~~~~v~~yVLs~fs~~E~~~l~~~i~~~~~al~~ 180 (209)
..-+||-|+++.+ ..||+-|+..++.+++.+.++++.
T Consensus 85 D~l~GG~G~~~~~--------R~~T~iE~~ii~~i~~~~~~~l~~ 121 (187)
T 4fhr_A 85 DIIMGGPGENPPN--------RPPTEIETSIMRKEVTNMLTLLAQ 121 (187)
T ss_dssp HHHTTSCCCSCCC--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCCC--------CcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456788875431 479999999999998888776643
No 27
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=29.90 E-value=60 Score=23.19 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=25.2
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 028433 152 KAFLLQKFNAIARERIDTALQEGVEVLKLLLS 183 (209)
Q Consensus 152 ~~yVLs~fs~~E~~~l~~~i~~~~~al~~~l~ 183 (209)
.+.+++.++++|.+.+...+.+..+.++..++
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 108 NQVALQGLSEVEISQLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45678899999999998888888877765543
No 28
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=29.22 E-value=34 Score=27.14 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.9
Q ss_pred chhhHHHHHHhcCCCCCceEEEeecC
Q 028433 86 SGESTGPLAAYYKLPLNRVLVFHDDM 111 (209)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVvhDDl 111 (209)
-|.++..+++.++++++++++|=|..
T Consensus 201 K~~~l~~l~~~lgi~~~~~i~~GD~~ 226 (274)
T 3fzq_A 201 KGKAIKRLQERLGVTQKETICFGDGQ 226 (274)
T ss_dssp HHHHHHHHHHHHTCCSTTEEEECCSG
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCCh
Confidence 46788999999999999999999954
No 29
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=28.58 E-value=29 Score=27.80 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.0
Q ss_pred chhhHHHHHHhcCCCCCceEEEeec
Q 028433 86 SGESTGPLAAYYKLPLNRVLVFHDD 110 (209)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVvhDD 110 (209)
-|.++..+++.++++++++++|=|.
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQ 222 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--C
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCc
Confidence 5788999999999999999999994
No 30
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=28.58 E-value=33 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=22.7
Q ss_pred hhhHHHHHHhcCCCCCceEEEeecC
Q 028433 87 GESTGPLAAYYKLPLNRVLVFHDDM 111 (209)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVvhDDl 111 (209)
|.++..+++.+++++++++.|=|..
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~~ 220 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDGG 220 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCcH
Confidence 6889999999999999999999953
No 31
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=27.90 E-value=38 Score=25.59 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=23.5
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 028433 152 KAFLLQKFNAIARERIDTALQEGVEVLKLLLS 183 (209)
Q Consensus 152 ~~yVLs~fs~~E~~~l~~~i~~~~~al~~~l~ 183 (209)
.+-+++.|+++|++.+..++++..+.++.+..
T Consensus 133 ~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~~ 164 (166)
T 3deu_A 133 RGEILAGISSEEIELLIKLIAKLEHNIMELHS 164 (166)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677888999988888888888777765543
No 32
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=27.86 E-value=45 Score=22.06 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=17.6
Q ss_pred HHHhcCCCCCceEEEe------ecCC-----CCCc---eEEEecCCCCCCCCc
Q 028433 93 LAAYYKLPLNRVLVFH------DDMG-----LPCG---VLRLRHNGGHGGHNG 131 (209)
Q Consensus 93 ~~~~~ki~~~~ilVvh------DDld-----lp~G---~irlk~gGs~gGHNG 131 (209)
+.+..++|+++.-++| ||.. +.-| .+-+|..|+.||+.|
T Consensus 33 i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg~~ 85 (85)
T 3mtn_B 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGGSG 85 (85)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC------
T ss_pred HHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCCCC
Confidence 4556788887664444 3322 2222 234567777777765
No 33
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=26.74 E-value=36 Score=27.38 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.6
Q ss_pred chhhHHHHHHhcCCCCCceEEEeec
Q 028433 86 SGESTGPLAAYYKLPLNRVLVFHDD 110 (209)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVvhDD 110 (209)
-|.++..+++.++++++++++|=|.
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~ 227 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQ 227 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4678999999999999999999994
No 34
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=26.62 E-value=36 Score=27.68 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.5
Q ss_pred chhhHHHHHHhcCCCCCceEEEeec
Q 028433 86 SGESTGPLAAYYKLPLNRVLVFHDD 110 (209)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVvhDD 110 (209)
-|.++..+++.++++++++++|=|.
T Consensus 212 K~~~l~~l~~~lgi~~~e~ia~GD~ 236 (283)
T 3dao_A 212 KWTALSYLIDRFDLLPDEVCCFGDN 236 (283)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCC
Confidence 4678999999999999999999994
No 35
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=26.32 E-value=32 Score=27.35 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.8
Q ss_pred hhhHHHHHHhcCCCCCceEEEeec
Q 028433 87 GESTGPLAAYYKLPLNRVLVFHDD 110 (209)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVvhDD 110 (209)
|.++..+++.++++++++++|=|.
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs 208 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG 208 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc
Confidence 667899999999999999999994
No 36
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=25.91 E-value=35 Score=27.32 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.5
Q ss_pred hhhHHHHHHhcCCCCCceEEEeec
Q 028433 87 GESTGPLAAYYKLPLNRVLVFHDD 110 (209)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVvhDD 110 (209)
|.++..+++.++++++++++|=|.
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDG 222 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCC
Confidence 888999999999999999999994
No 37
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.89 E-value=51 Score=25.98 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.3
Q ss_pred cCcCCHHHHHHHHHHHHHHHH
Q 028433 156 LQKFNAIARERIDTALQEGVE 176 (209)
Q Consensus 156 Ls~fs~~E~~~l~~~i~~~~~ 176 (209)
||.+|++|++.|.+++.+..+
T Consensus 14 Ls~LteeEr~~Il~VL~Rd~~ 34 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQRDFD 34 (153)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhHHH
Confidence 799999999999999887544
No 38
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=25.43 E-value=40 Score=27.43 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.1
Q ss_pred chhhHHHHHHhcCCCCCceEEEeecC
Q 028433 86 SGESTGPLAAYYKLPLNRVLVFHDDM 111 (209)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVvhDDl 111 (209)
-|.++..+++.++++++++++|=|..
T Consensus 210 K~~al~~l~~~lgi~~~~~ia~GD~~ 235 (285)
T 3pgv_A 210 KGHALEAVAKMLGYTLSDCIAFGDGM 235 (285)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred hHHHHHHHHHHhCCCHHHEEEECCcH
Confidence 47889999999999999999999953
No 39
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=25.42 E-value=39 Score=27.80 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.3
Q ss_pred chhhHHHHHHhcCCCCCceEEEeec
Q 028433 86 SGESTGPLAAYYKLPLNRVLVFHDD 110 (209)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVvhDD 110 (209)
-|.++..+++.++++++++++|=|.
T Consensus 229 K~~al~~l~~~lgi~~~e~i~~GDs 253 (304)
T 3l7y_A 229 KGWALQQLLKRWNFTSDHLMAFGDG 253 (304)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHhCcCHHHEEEECCC
Confidence 3568999999999999999999994
No 40
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=24.60 E-value=51 Score=23.50 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.2
Q ss_pred HHHhcCCCCCceEEEeecCCCCCc
Q 028433 93 LAAYYKLPLNRVLVFHDDMGLPCG 116 (209)
Q Consensus 93 ~~~~~ki~~~~ilVvhDDldlp~G 116 (209)
+.+..+++++++.|+.+|++ .+|
T Consensus 84 l~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 84 ITKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp HHHHHCCCGGGEEEEEECCS-CCE
T ss_pred HHHHhCcCcceEEEEEEEhh-Hee
Confidence 45567899999999999998 665
No 41
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=24.37 E-value=63 Score=19.86 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=18.4
Q ss_pred CCCCCCCCccccccCcCCHHHHHHHHHHHHH
Q 028433 143 GRPPGQMDPKAFLLQKFNAIARERIDTALQE 173 (209)
Q Consensus 143 GrP~~~~~v~~yVLs~fs~~E~~~l~~~i~~ 173 (209)
|||.... -..-+-=.+++++.+.|+.....
T Consensus 1 GRP~~~~-~~~~i~vrl~~el~~~l~~~a~~ 30 (55)
T 2k9i_A 1 GRPYKLL-NGIKLGVYIPQEWHDRLMEIAKE 30 (55)
T ss_dssp CCCSSTT-CCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCCC-ccceEEEEcCHHHHHHHHHHHHH
Confidence 8885321 12233347788888888876544
No 42
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=24.11 E-value=55 Score=29.68 Aligned_cols=114 Identities=22% Similarity=0.293 Sum_probs=62.4
Q ss_pred CCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEE--CCeeEEEEeC----Cchhhhchhh
Q 028433 16 ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFV--GDAPVLLAKP----QTYMNLSGES 89 (209)
Q Consensus 16 ~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~--~~~~v~L~KP----~TyMNlSG~a 89 (209)
....|||||||. .-|--. .|-.+++.|. ++ +.-+. ++...+ .-..|.-+-| +|=||. ++.
T Consensus 112 ~~~iLVVGLGN~----~vTpDA-LGP~Vv~~l~----vT--rHl~~--~g~~~~~~~~~pVsAiaPGVmg~TGiEt-~Ei 177 (371)
T 1c8b_A 112 DASCLVVGLGNL----SVTPDA-LGPKAVDNLL----IT--RHLFE--LQPESVQDGFRPVSAIVPGVMGMTGIET-SDI 177 (371)
T ss_dssp TCCEEEEECSCS----SSGGGC-HHHHHHTTCC----CC--HHHHH--HSCCSSCSSCCCEEEECSGGGCCCSSCH-HHH
T ss_pred CCcEEEEEcCCC----CcCccc-cCcceeeeee----EE--eehhh--hCchhhccCCCceEEecCCccccccccH-HHH
Confidence 456799999997 457888 8888887652 11 10010 111011 1134556556 566775 467
Q ss_pred HHHHHHhcCCCCCceEEEeecCCC----CCc-eEEEecCC---CCCCCCchHHHH-HhcC----CCCCCC
Q 028433 90 TGPLAAYYKLPLNRVLVFHDDMGL----PCG-VLRLRHNG---GHGGHNGLKSVM-NNFR----GIGRPP 146 (209)
Q Consensus 90 V~~~~~~~ki~~~~ilVvhDDldl----p~G-~irlk~gG---s~gGHNGLkSIi-~~Lg----GIGrP~ 146 (209)
|+.+.+.++ .+++|.-|-|-. -+| +|.+-..| |+|=-|==+.|. +.|| .||=|.
T Consensus 178 I~gIv~k~k---Pd~VIAIDALAars~~Rl~~TIQIsdTGI~PGSGVGN~R~~ls~etLGVPVIAIGVPT 244 (371)
T 1c8b_A 178 IFGVVKKVN---PDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEISYETLGIPVIAIGIPT 244 (371)
T ss_dssp HHHHHHHHC---CSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSSSCCC---------CC
T ss_pred HHHHHHhcC---CCEEEEEchhhcCcHhhcCCeEEECCCCCCCCcCCCccccccCHHHcCCCEEEEcCCc
Confidence 888888876 468888888544 256 78877655 332223222232 4456 677664
No 43
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=23.45 E-value=42 Score=25.24 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=14.8
Q ss_pred cCCCCCceEEEe--cCCCCCCCC
Q 028433 110 DMGLPCGVLRLR--HNGGHGGHN 130 (209)
Q Consensus 110 Dldlp~G~irlk--~gGs~gGHN 130 (209)
++++|...++++ +.+|+||+|
T Consensus 14 ~i~I~~~dl~~~~~RssGpGGQn 36 (112)
T 1j26_A 14 SSYIPLDRLSISYCRSSGPGGQN 36 (112)
T ss_dssp CCCCCTTTSEEEEECCCCSSSSC
T ss_pred EEecChHHeEEEEEECCCCCCCC
Confidence 455666666555 788899987
No 44
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=20.97 E-value=55 Score=25.32 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=22.6
Q ss_pred chhhHHHHHHhcCCCCCceEEEeecC
Q 028433 86 SGESTGPLAAYYKLPLNRVLVFHDDM 111 (209)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVvhDDl 111 (209)
.+.++..+++.++++++++++|=|..
T Consensus 192 k~~~~~~~~~~lgi~~~~~i~iGD~~ 217 (271)
T 2x4d_A 192 SPEFFKSALQAIGVEAHQAVMIGDDI 217 (271)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEEESCT
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCc
Confidence 46778889999999999999999954
No 45
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=20.85 E-value=1.2e+02 Score=21.86 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=28.1
Q ss_pred CcCCHHHHHHHHHHHHHH-------HHHHHHHHh-cCHHHHHHhhhc
Q 028433 157 QKFNAIARERIDTALQEG-------VEVLKLLLS-KGLTESARHFNT 195 (209)
Q Consensus 157 s~fs~~E~~~l~~~i~~~-------~~al~~~l~-~~~~~amn~~N~ 195 (209)
++||++|.+.|++++... .+.|...+- ...+.+.++|+.
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~ 55 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI 55 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 589999999998887654 344444443 567788888875
No 46
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=20.01 E-value=82 Score=22.19 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=20.5
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHH
Q 028433 152 KAFLLQKFNAIARERIDTALQEGVEVLK 179 (209)
Q Consensus 152 ~~yVLs~fs~~E~~~l~~~i~~~~~al~ 179 (209)
.+.+++.++++|.+.+...+++..+.++
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~~~~~l~ 135 (138)
T 3bpv_A 108 EDLLFRDFTEDERKLFRKMCRRLAEEAV 135 (138)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888887777766654
Done!