RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028433
         (209 letters)



>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score =  160 bits (405), Expect = 2e-50
 Identities = 103/190 (54%), Positives = 137/190 (72%), Gaps = 11/190 (5%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ 
Sbjct: 3   PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 61

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ 
Sbjct: 62  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 121

Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
           +            GIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 122 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 181

Query: 188 ESARHFNTIQ 197
            S   FN +Q
Sbjct: 182 GSTERFNLVQ 191


>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
           [TaxId: 562]}
          Length = 193

 Score =  139 bits (352), Expect = 2e-42
 Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 12/186 (6%)

Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 78
           L VGL NPG +Y  TRHN  G   +D  AE     +           +  +G   V L  
Sbjct: 4   LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
           P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK +++ 
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISK 122

Query: 139 FR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 188
                       GIG P  +     F+L K     ++ ID A+ E     ++  + GLT+
Sbjct: 123 LGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTK 182

Query: 189 SARHFN 194
           +    +
Sbjct: 183 ATNRLH 188


>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 157

 Score = 28.5 bits (64), Expect = 0.39
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 135 VMNNFRGIGRPPGQMDPKAFLLQKFNAI-ARERIDTALQEGVEVLKLLLSKG 185
            +  F+ +   PGQ  P   LLQ F  +  + +++    E +E+ + +L +G
Sbjct: 67  TIRRFQSVPAQPGQTSP---LLQYFGILLDQGQLNK--YESLELCRPVLQQG 113


>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 25.7 bits (56), Expect = 4.3
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 116 GVLRLRHNGGHGGHNGLKSVMNNFRGI----GRPPGQMDPKAFLLQKFNAIARERIDTAL 171
           G+  +R N  HG +      + N R +    G+    +              ++ +    
Sbjct: 27  GMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKG--PALAEKDKQDLIFGC 84

Query: 172 QEGVEVLKL 180
           ++GV+ +  
Sbjct: 85  EQGVDFVAA 93


>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
           [TaxId: 1394]}
          Length = 208

 Score = 24.9 bits (54), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 23  GLGNPGDKYKGTR 35
           GLG+ GD+  GT+
Sbjct: 196 GLGDAGDRLFGTK 208


>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia
           coli [TaxId: 562]}
          Length = 473

 Score = 24.9 bits (53), Expect = 9.8
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 142 IGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 183
           IG    + D    L+ KF      +  T  Q+   +L++ L 
Sbjct: 416 IGHARRRQDGIPKLVDKFKINLARQFPTRQQQ--RILEVSLD 455


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 784,533
Number of extensions: 34535
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 10
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)