BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028434
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 50 EFIKTSCRVTLYPDLCYNTLSSYASTIQTNPTELANAALSVSLNEAKSTSALVLKLSKGL 109
I C T P LC L S + + L ++ ++ AK TS ++ L+
Sbjct: 4 HLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ- 62
Query: 110 ELRPREASAVKDCVENTRDSVDELQQSLQAMKDLKGPEFEFKINDLQTWVSAALTNEDTC 169
P+ + C EN D++D L Q+ Q + N L + SAA TC
Sbjct: 63 ATDPKLKGRYETCSENYADAIDSLGQAKQFLT-------SGDYNSLNIYASAAFDGAGTC 115
Query: 170 MDNFEG 175
D+FEG
Sbjct: 116 EDSFEG 121
>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
Length = 153
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 52 IKTSCRVTLYPDLCYNTLSS-YASTIQTNPTELANAALSVSLNEAKSTSALVLKLSKGLE 110
+ T C TL P C L++ +AS P A A ++ +A++T L KL ++
Sbjct: 8 MSTICDKTLNPSFCLKFLNTKFAS-----PNLQALAKTTLDSTQARATQTLK-KLQSIID 61
Query: 111 --LRPREASAVKDCVENTRDSVDELQQSLQAMKDLKGPEFEFKINDLQTWVSAALTNEDT 168
+ PR A + CV+ ++ L+++ + + G K VSAAL DT
Sbjct: 62 GGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMK-------VSAALDGADT 114
Query: 169 CMDNFE 174
C+D+ +
Sbjct: 115 CLDDVK 120
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 52 IKTSCRVTLYPDLCYNTLSS-YASTIQTNPTELANAALSVSLNEAKSTSALVLKLSKGLE 110
+ T C TL P C L++ +AS N LA L + A T + + G
Sbjct: 7 MSTICDKTLNPSFCLKFLNTKFASA---NLQALAKTTLDSTQARATQTLKKLQSIIDG-G 62
Query: 111 LRPREASAVKDCVENTRDSVDELQQSLQAMKDLKGPEFEFKINDLQTWVSAALTNEDTCM 170
+ PR A + CV+ ++ L+++ + + G K VSAAL DTC+
Sbjct: 63 VDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMK-------VSAALDGADTCL 115
Query: 171 DNFE 174
D+ +
Sbjct: 116 DDVK 119
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 153
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 52 IKTSCRVTLYPDLCYNTLSS-YASTIQTNPTELANAALSVSLNEAKSTSALVLKLSKGLE 110
+ T C TL P C L++ +AS N LA L + A T + + G
Sbjct: 8 MSTICDKTLNPSFCLKFLNTKFASA---NLQALAKTTLDSTQARATQTLKKLQSIIDG-G 63
Query: 111 LRPREASAVKDCVENTRDSVDELQQSLQAMKDLKGPEFEFKINDLQTWVSAALTNEDTCM 170
+ PR A + CV+ ++ L+++ + + G K VSAAL DTC+
Sbjct: 64 VDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMK-------VSAALDGADTCL 116
Query: 171 DNFE 174
D+ +
Sbjct: 117 DDVK 120
>pdb|2HZL|A Chain A, Crystal Structures Of A Sodium-Alpha-Keto Acid Binding
Subunit From A Trap Transporter In Its Closed Forms
pdb|2HZL|B Chain B, Crystal Structures Of A Sodium-Alpha-Keto Acid Binding
Subunit From A Trap Transporter In Its Closed Forms
Length = 365
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 90 VSLNEAKSTSALVLKLSKGLELRPREASAVKDCVENTRDSVDELQQSLQAMKDLKGPEFE 149
+ L + K+ +A+ +++G +LRP ++ C E + E++ S A K +
Sbjct: 277 LQLYDWKNPTAIKSLVAQGTQLRPFSPEILQACFEAANEVYAEMEASNPAFKKIWDSIKA 336
Query: 150 FKINDLQTWVSAALTNEDTCM 170
F+ ++ TW A N DT M
Sbjct: 337 FR-SEHYTWAQIAEYNYDTFM 356
>pdb|1EYS|C Chain C, Crystal Structure Of Photosynthetic Reaction Center From A
Thermophilic Bacterium, Thermochromatium Tepidum
Length = 382
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 124 ENTRDSVDELQQSLQAMKDLKGPEFEFKINDLQTWVS 160
++T E+ QS+Q +KDL EF + + TWVS
Sbjct: 44 DSTGPKASEVYQSVQVLKDLSVGEFTRTMVAVTTWVS 80
>pdb|2HZK|A Chain A, Crystal Structures Of A Sodium-Alpha-Keto Acid Binding
Subunit From A Trap Transporter In Its Open Form
pdb|2HZK|B Chain B, Crystal Structures Of A Sodium-Alpha-Keto Acid Binding
Subunit From A Trap Transporter In Its Open Form
pdb|2HZK|C Chain C, Crystal Structures Of A Sodium-Alpha-Keto Acid Binding
Subunit From A Trap Transporter In Its Open Form
pdb|2HZK|D Chain D, Crystal Structures Of A Sodium-Alpha-Keto Acid Binding
Subunit From A Trap Transporter In Its Open Form
Length = 365
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 90 VSLNEAKSTSALVLKLSKGLELRPREASAVKDCVENTRDSVDELQQSLQAMKDLKGPEFE 149
+ L + K+ +A+ +++G +LRP ++ C E + E + S A K +
Sbjct: 277 LQLYDWKNPTAIKSLVAQGTQLRPFSPEILQACFEAANEVYAEXEASNPAFKKIWDSIKA 336
Query: 150 FKINDLQTWVSAALTNEDT 168
F+ ++ TW A N DT
Sbjct: 337 FR-SEHYTWAQIAEYNYDT 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,566,644
Number of Sequences: 62578
Number of extensions: 143484
Number of successful extensions: 300
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 11
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)