Query 028434
Match_columns 209
No_of_seqs 140 out of 865
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 2.1E-34 7.3E-39 223.4 16.2 149 49-208 3-151 (153)
2 1x91_A Invertase/pectin methyl 100.0 3E-34 1E-38 222.8 13.9 149 47-208 3-151 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 8.9E-34 3E-38 219.6 15.1 147 47-207 2-149 (150)
4 2l7n_A Talin-1; integrin, bund 55.4 56 0.0019 24.9 7.7 87 83-170 77-164 (168)
5 3cjh_B Mitochondrial import in 38.6 63 0.0022 20.1 4.8 29 111-139 34-62 (64)
6 2bsk_B Mitochondrial import in 33.2 97 0.0033 20.7 5.3 33 110-142 42-74 (90)
7 2bsk_A Mitochondrial import in 31.9 1E+02 0.0035 20.6 5.3 32 111-142 41-72 (89)
8 3dxr_B Mitochondrial import in 31.9 83 0.0028 21.5 4.8 32 111-142 56-87 (95)
9 3dxr_A Mitochondrial import in 31.3 97 0.0033 20.7 5.1 32 111-142 50-81 (89)
10 3cjh_A Mitochondrial import in 19.8 92 0.0032 19.4 3.0 32 111-142 25-56 (64)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=2.1e-34 Score=223.38 Aligned_cols=149 Identities=26% Similarity=0.409 Sum_probs=136.8
Q ss_pred hHHHHhccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHHHh
Q 028434 49 TEFIKTSCRVTLYPDLCYNTLSSYASTIQTNPTELANAALSVSLNEAKSTSALVLKLSKGLELRPREASAVKDCVENTRD 128 (209)
Q Consensus 49 ~~~I~~~C~~T~~p~lC~~tL~~~~~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~~al~dC~ely~~ 128 (209)
.+.|+.+|++|+||++|+++|.++|++...|+++|+++++++++.++..+...+.++.+.. .+++.+.+++||.|+|++
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y~~ 81 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQA-TDPKLKGRYETCSENYAD 81 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999887789999999999999999999999999987654 589999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhHHHHHHHhhcChhhHhhhcCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 028434 129 SVDELQQSLQAMKDLKGPEFEFKINDLQTWVSAALTNEDTCMDNFEGNGVNGKVKDTIRGRIVRASQLISNALALINQLN 208 (209)
Q Consensus 129 a~d~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~s~l~~~~~~~~~L~snaLaii~~l~ 208 (209)
++++|++++.+++.+ + ++|+++|||+|++|++||+|||.+.+ .++++|..++.++.+|++|+|+|++.|.
T Consensus 82 a~~~L~~a~~~l~~~---~----~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 82 AIDSLGQAKQFLTSG---D----YNSLNIYASAAFDGAGTCEDSFEGPP---NIPTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHT---C----HHHHHHHHHHHHHHHHHHHHHCCSSS---CCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhC---C----HHHHHHHHHHHhcccchHHHHhccCC---CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999863 2 48999999999999999999998742 4678999999999999999999999874
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=3e-34 Score=222.83 Aligned_cols=149 Identities=23% Similarity=0.350 Sum_probs=133.8
Q ss_pred chhHHHHhccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHH
Q 028434 47 SSTEFIKTSCRVTLYPDLCYNTLSSYASTIQTNPTELANAALSVSLNEAKSTSALVLKLSKGLELRPREASAVKDCVENT 126 (209)
Q Consensus 47 ~~~~~I~~~C~~T~~p~lC~~tL~~~~~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~~al~dC~ely 126 (209)
++.+.|+.+|++|+||++|+++| .|++...|+++|+++++++++.++..+...+.++.+.. .+++.+.+++||.|+|
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y 79 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGG-VDPRSKLAYRSCVDEY 79 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 34567899999999999999999 66666789999999999999999999999999987654 5899999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCCCcchhhhhhHHHHHHHhhcChhhHhhhcCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHh
Q 028434 127 RDSVDELQQSLQAMKDLKGPEFEFKINDLQTWVSAALTNEDTCMDNFEGNGVNGKVKDTIRGRIVRASQLISNALALINQ 206 (209)
Q Consensus 127 ~~a~d~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~s~l~~~~~~~~~L~snaLaii~~ 206 (209)
++++++|++++.++..+ + ++|+++|||+|++|++||+|||.+.+ .++++|..++.++.+|++|+|+|+++
T Consensus 80 ~~a~~~L~~a~~~l~~~---~----~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~~~~~~~~~l~s~aLai~~~ 149 (153)
T 1x91_A 80 ESAIGNLEEAFEHLASG---D----GMGMNMKVSAALDGADTCLDDVKRLR---SVDSSVVNNSKTIKNLCGIALVISNM 149 (153)
T ss_dssp HHHHHHHHHHHHHHHTT---C----HHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---C----HHHHHHHHHHHHccHhHHHHHhccCC---CCcCHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999863 2 59999999999999999999998742 46889999999999999999999998
Q ss_pred hc
Q 028434 207 LN 208 (209)
Q Consensus 207 l~ 208 (209)
|.
T Consensus 150 l~ 151 (153)
T 1x91_A 150 LP 151 (153)
T ss_dssp SC
T ss_pred cc
Confidence 75
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=8.9e-34 Score=219.64 Aligned_cols=147 Identities=17% Similarity=0.254 Sum_probs=132.9
Q ss_pred chhHHHHhccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHH
Q 028434 47 SSTEFIKTSCRVTLYPDLCYNTLSSYASTIQTNPTELANAALSVSLNEAKSTSALVLKLSKGLELRPREASAVKDCVENT 126 (209)
Q Consensus 47 ~~~~~I~~~C~~T~~p~lC~~tL~~~~~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~~al~dC~ely 126 (209)
++.+.|+.+|++|+||++|+++|.++|++...|+++|+++++++++.++..+..++.++.+.. .+++.+.+++||.|+|
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~-~~~~~~~al~dC~e~y 80 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSN-PPAAWKGPLKNCAFSY 80 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCGGGHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHH
Confidence 567899999999999999999999999987789999999999999999999999999987654 4788999999999999
Q ss_pred HhHH-HHHHHHHHHHhcCCCCcchhhhhhHHHHHHHhhcChhhHhhhcCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 028434 127 RDSV-DELQQSLQAMKDLKGPEFEFKINDLQTWVSAALTNEDTCMDNFEGNGVNGKVKDTIRGRIVRASQLISNALALIN 205 (209)
Q Consensus 127 ~~a~-d~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~s~l~~~~~~~~~L~snaLaii~ 205 (209)
++++ ++|++++.+++. ++ ++++++|||+|++|++||+|||.+. ++||..++.++.+|++|+|+|++
T Consensus 81 ~~a~~~~L~~a~~~l~~---~~----~~~~~t~lsaAlt~~~tC~dgf~~~------~~pl~~~~~~~~~l~s~aLaii~ 147 (150)
T 2cj4_A 81 KVILTASLPEAIEALTK---GD----PKFAEDGMVGSSGDAQECEEYFKGS------KSPFSALNIAVHELSDVGRAIVR 147 (150)
T ss_dssp HHHHHTHHHHHHHHHHH---SC----HHHHHHHHHHHHHHHHHHHHTTTTS------CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHHHHHHHHHhhCCC------CCccHHHHHHHHHHHHHHHHHHH
Confidence 9999 799999999986 23 4899999999999999999999741 46799999999999999999998
Q ss_pred hh
Q 028434 206 QL 207 (209)
Q Consensus 206 ~l 207 (209)
+|
T Consensus 148 ~l 149 (150)
T 2cj4_A 148 NL 149 (150)
T ss_dssp TT
T ss_pred hh
Confidence 76
No 4
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=55.36 E-value=56 Score=24.85 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHh-HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCcchhhhhhHHHHHHH
Q 028434 83 LANAALSVSLNEAKSTSALVLKLSKGLELRPR-EASAVKDCVENTRDSVDELQQSLQAMKDLKGPEFEFKINDLQTWVSA 161 (209)
Q Consensus 83 l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~-~~~al~dC~ely~~a~d~L~~a~~~l~~~~~~~~~~~~~d~~twLSA 161 (209)
+.-++-+.+...++.....++.+.... .++. ++.-++.+.+..+++..-++++-..+.......-......+-.-+|.
T Consensus 77 y~g~aar~~A~aL~~lt~avrgvaatt-~d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~p~d~~~~~~L~~~ak~vs~ 155 (168)
T 2l7n_A 77 YAGIAARDVAGGLRSLAQAARGVAALT-SDPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQ 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSSCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 555554444455555555555555433 3444 44456666677888777777777776543211111234455556777
Q ss_pred hhcChhhHh
Q 028434 162 ALTNEDTCM 170 (209)
Q Consensus 162 Alt~~~TC~ 170 (209)
++.....|+
T Consensus 156 aL~~~v~cL 164 (168)
T 2l7n_A 156 ALNRCVSCL 164 (168)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhcC
Confidence 775544454
No 5
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=38.61 E-value=63 Score=20.11 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.0
Q ss_pred CCHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 028434 111 LRPREASAVKDCVENTRDSVDELQQSLQA 139 (209)
Q Consensus 111 ~~~~~~~al~dC~ely~~a~d~L~~a~~~ 139 (209)
.+..+..|++.|.+-|-++-..+.+.+..
T Consensus 34 L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 34 LSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999888776654
No 6
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=33.21 E-value=97 Score=20.73 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=28.7
Q ss_pred CCCHhHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 028434 110 ELRPREASAVKDCVENTRDSVDELQQSLQAMKD 142 (209)
Q Consensus 110 ~~~~~~~~al~dC~ely~~a~d~L~~a~~~l~~ 142 (209)
..+..+..|++.|.+-|-++-..+.+.+..+..
T Consensus 42 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 74 (90)
T 2bsk_B 42 ELSKGESVCLDRCVSKYLDIHERMGKKLTELSM 74 (90)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999888887664
No 7
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=31.94 E-value=1e+02 Score=20.60 Aligned_cols=32 Identities=13% Similarity=0.361 Sum_probs=28.7
Q ss_pred CCHhHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 028434 111 LRPREASAVKDCVENTRDSVDELQQSLQAMKD 142 (209)
Q Consensus 111 ~~~~~~~al~dC~ely~~a~d~L~~a~~~l~~ 142 (209)
.+..+..|++.|.+-|-++-..+.+.+..+..
T Consensus 41 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 72 (89)
T 2bsk_A 41 VKPEETTCSEHCLQKYLKMTQRISMRFQEYHI 72 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999988888764
No 8
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=31.85 E-value=83 Score=21.48 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=27.0
Q ss_pred CCHhHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 028434 111 LRPREASAVKDCVENTRDSVDELQQSLQAMKD 142 (209)
Q Consensus 111 ~~~~~~~al~dC~ely~~a~d~L~~a~~~l~~ 142 (209)
.+..+..|++.|.+-|-++-..+.+.+..+..
T Consensus 56 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 56 LNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999888877653
No 9
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=31.34 E-value=97 Score=20.72 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=28.3
Q ss_pred CCHhHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 028434 111 LRPREASAVKDCVENTRDSVDELQQSLQAMKD 142 (209)
Q Consensus 111 ~~~~~~~al~dC~ely~~a~d~L~~a~~~l~~ 142 (209)
.+..+..|++.|.+-|-++-..+.+.+..+..
T Consensus 50 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 81 (89)
T 3dxr_A 50 LTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 81 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999988887654
No 10
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=19.77 E-value=92 Score=19.45 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCHhHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 028434 111 LRPREASAVKDCVENTRDSVDELQQSLQAMKD 142 (209)
Q Consensus 111 ~~~~~~~al~dC~ely~~a~d~L~~a~~~l~~ 142 (209)
.+..+..|++.|.+-|-++-..+.+....+..
T Consensus 25 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 56 (64)
T 3cjh_A 25 YATRNDACIDQCLAKYMRSWNVISKAYISRIQ 56 (64)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667899999999999999999888776543
Done!