RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028437
(209 letters)
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 286 bits (733), Expect = 5e-98
Identities = 110/165 (66%), Positives = 133/165 (80%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
L L+ DVV+IPAGVPRKPGMTRDDLFN NA IV L +A A++CP+A++ +ISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
ST+PI AEVFKK G YN K+FGVTTLD+VRA F A ++ A
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPA 166
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 284 bits (728), Expect = 4e-97
Identities = 115/173 (66%), Positives = 134/173 (77%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
+ P KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V
Sbjct: 2 AKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV 61
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
G++G QL AL D++I+PAGVPRKPGMTRDDLF INAGIVK LC IAK CP AIV
Sbjct: 62 RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIV 121
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
N+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF A ++
Sbjct: 122 NLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR 174
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 270 bits (692), Expect = 1e-91
Identities = 99/167 (59%), Positives = 120/167 (71%), Gaps = 3/167 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
KVAVLGAAGGIGQ LALL+K P S L+LYDIA TPGVA D+ HI T ++ G+ G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
+ ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L +AK CP A + +I+NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPG 167
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 130 bits (330), Expect = 5e-37
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGYMG 86
K+ ++GAAG IG +A + L L LYD GVA ++ H E
Sbjct: 9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH--CGFEGLNLTF 66
Query: 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMIS 145
+ +AL D+ ++ G PRK GMTR+DL NA I L I YCP+ V +I
Sbjct: 67 TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126
Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
NP + T + +G ++ + LD R ++ A + +
Sbjct: 127 NPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQS 171
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 115 bits (290), Expect = 2e-31
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 19/173 (10%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYM 85
KV+V+GAAG +G + L + + DI + AAD H Y
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH------GIAYD 55
Query: 86 GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
N ++ Q SDVV+I AG+PR+PG TR DL NA I++D+ S++ ++ + I
Sbjct: 56 SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
SNPV+ + +AG + +++ G LD R + + + + V
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPV 164
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 115 bits (290), Expect = 2e-31
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGH----INTRSEV 81
KV ++GA+G +G ALL+ P + L L + G+ D+ + + +
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
+ + +++SDVVII +GVPRK GM+R DL NA IV IA+ C I
Sbjct: 62 YVESDENL--RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+I+NPV+ + + ++FG+ T LD +R K A V++
Sbjct: 120 -VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHI 167
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 114 bits (289), Expect = 3e-31
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
KV V+GA G +G +A + + + + DI + G A D+ + V G
Sbjct: 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
ND EDSDV II AG+PR PGM+RDDL N IV + + P++ + +
Sbjct: 61 --TNDY--GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
++NP++ + V +A + ++ G+ LD R ++F A + +V+V
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSV 163
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 113 bits (285), Expect = 1e-30
Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
K+ V+GA G +G A + L L L D+ G A D+ ++V G
Sbjct: 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
ND +SD+VII AG+PRKPGMTR+DL NAGIVK++ I K+ N I+ +
Sbjct: 61 --SNDY--ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+SNP++ I V ++++ G+ LD R ++F A + V++
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSM 163
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 112 bits (283), Expect = 2e-30
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH--- 74
++ ++ +KV+V+GA G G A L+ L + + L DI D+
Sbjct: 2 NAMTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASP 59
Query: 75 -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
+ + G +D DSDVV+I AG+ RKPGM+RDDL N+ I+K + IA
Sbjct: 60 VQGFDANIIG--TSDY--ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIA 115
Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
K+ PNAI+ +++NPV+ K + ++++ G LD R +TF A + N++
Sbjct: 116 KHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLS 171
Query: 193 V 193
V
Sbjct: 172 V 172
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 111 bits (280), Expect = 5e-30
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
+K++++GA G +G A + L + L DI G A D+ V
Sbjct: 3 KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G N+ +SDV+++ +G PRKPGM+R+DL +NA I + S A PNA++
Sbjct: 61 G--TNNY--ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVII 116
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
M++NP++ + + + ++++ G LD R +TF A +A V+V
Sbjct: 117 MVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSV 164
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 111 bits (280), Expect = 6e-30
Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
RK+AV+G+ G IG +A ++ + L + + L+DIA G A D+ H + S+V
Sbjct: 5 RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G +D + SDVVII A +P +P R +L NA I+ + + KYCPNA V
Sbjct: 63 G--TDDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
I+NP++ + F+K K+ G+ LD R +TF A VN
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNA 166
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 110 bits (278), Expect = 1e-29
Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 17/172 (9%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
+K+ ++GA G IG LA L + L + L+DIA G A D+ +V
Sbjct: 6 KKITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR 63
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G ND + LE+SDVVI+ AGVPRKPGM+RDDL IN +++ + I CPNA V
Sbjct: 64 G--TNDY--KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVI 119
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
I+NP++ I + +K + K+ G+ LD R +TF A + NV+V
Sbjct: 120 CITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSV 167
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 110 bits (277), Expect = 1e-29
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
K+ +GA G +G A LN V +AL DIA G A D+ H I+ ++ G
Sbjct: 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
G D L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+ I + P + + +
Sbjct: 61 --GADY--SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
++NP++ + + K ++FG+ LD R K N+
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI 163
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 110 bits (277), Expect = 2e-29
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 17/178 (9%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
+ + +K++++GA G IG +ALL+ L + ++DI G A D+ H I
Sbjct: 9 NTVIMRKKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIG 66
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ +++ G N+ + L++SDVVII AGVPRKP MTR DL +NA IV + + KYC
Sbjct: 67 SPAKIFG--ENNY--EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC 122
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
PNA V I+NP++ FK+ K+ G+ LD R + + V
Sbjct: 123 PNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKP 176
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 110 bits (277), Expect = 2e-29
Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
K+A++G+ G IG LA L L L + L+DIA G D+ ++
Sbjct: 8 NKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT 65
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G ND A+E +DVVI+ AGVPRKPGM+RDDL IN +++ + + I KY P A V
Sbjct: 66 G--ANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
I+NP++ +K K+ G+ LD R + F + + NV+V
Sbjct: 122 CITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSV 169
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 109 bits (275), Expect = 4e-29
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
+KV ++G G +G A M + + D+ T G A D+ +
Sbjct: 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED------AQAFTA 58
Query: 87 NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
++ +D+D+V+I AG P+KPG +R DL N N I+ + + + I
Sbjct: 59 PKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+ +NPV+ I K + ++++ G T+LD R + + NV+
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDP 166
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 107 bits (271), Expect = 2e-28
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 18/172 (10%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
+KV ++G G +G A M L + + + DI T G A D+ + +
Sbjct: 10 QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN------ALPFTS 62
Query: 87 NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
++ +D+D+V+I AG P+KPG TR DL N N I+K + I N I
Sbjct: 63 PKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+ +NPV+ I K + + ++ G T+LD R + A NV+
Sbjct: 123 VAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDA 170
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 107 bits (270), Expect = 2e-28
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 21/174 (12%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
KV ++G G +G A + +V L + D+ G D+ H R +
Sbjct: 7 NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
Y D+D+V+I AG +KPG TR DL + N I K + + + I
Sbjct: 66 AGEY-------SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI 118
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+ +NPV+ I A K ++++ G T LD R + + +V
Sbjct: 119 FLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAP 168
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 106 bits (268), Expect = 4e-28
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 21/174 (12%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
KVA++GA G +G A + + L + D+ G D+ H ++
Sbjct: 6 NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS 64
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
Y + +D+D+V I AG +KPG TR +L N I K + S + + I
Sbjct: 65 YGTY-------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI 117
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+ +NPV+ I K ++++ G TTLD R + +
Sbjct: 118 FLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAP 167
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 106 bits (268), Expect = 4e-28
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 21/181 (11%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
+ +V K+AV+GA G +G LA + + L DIA D+ H
Sbjct: 1 AETTVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY 59
Query: 76 NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
T S + D+D+V+I AG +KPG +R +L I+K + +
Sbjct: 60 PTVSIDGSDDP-------EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLV 112
Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
K PNAI +I+NPV+ IA V +K E ++FG T LD R + A + VN
Sbjct: 113 KVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVN 168
Query: 193 V 193
V
Sbjct: 169 V 169
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 106 bits (267), Expect = 5e-28
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 21/174 (12%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
+V V+GA G +G + + + L D G A D H
Sbjct: 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
Y D+D+V+I AG +KPG TR DL + N I + + ++ +
Sbjct: 66 HGDY-------DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL 118
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+ +NPV+ I K +++ G T LD R + +V
Sbjct: 119 FLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAP 168
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 106 bits (266), Expect = 6e-28
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGY 84
+ +LGA G +G A+++ + L L G A D+ H + ++G
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG- 58
Query: 85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
N + + SD+V++ AG+ RKPGMTR+ L NA + DL I Y +AIV +
Sbjct: 59 -SNSY--EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115
Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+NPV+ V K + +++ G LD R + + K V+
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSF 161
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 106 bits (266), Expect = 7e-28
Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
KVA++GA G +G A M L + L L D+ G A D+ H
Sbjct: 4 VKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH------GL 56
Query: 83 GYMGNDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
+MG L ++D DV+++ AG RKPG TR DL N I K++ I KY +
Sbjct: 57 PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH 116
Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
++ ++SNPV+ I + +K K+ G T LD +R + + K V+V
Sbjct: 117 GVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDV 168
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 105 bits (265), Expect = 1e-27
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
K+ ++G G +G A + + + L D+ G A D+ H +
Sbjct: 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH------GTPFTRR 54
Query: 88 DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
+ L+ SDVVI+ AGVP+KPG TR L NA ++K++ ++KY P++IV +
Sbjct: 55 ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
++NPV+ + F K + +K+FG T LD R +T A +
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSP 161
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 105 bits (264), Expect = 1e-27
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 18/171 (10%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
KV ++G+ G +G A + L + + L D+ A D+ H +
Sbjct: 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILH------ATPFAHP 54
Query: 88 DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
+ LE + V++ AGV ++PG TR L + NA + + + + P A++ +
Sbjct: 55 VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+NPV+ + +V ++ G T LD R + A V
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAP 161
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 105 bits (264), Expect = 1e-27
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 21/181 (11%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
S E K+ V+G +G A+ + + L +AL D+ G D+ H +
Sbjct: 15 SQEPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL 73
Query: 76 NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
+T V+G Y S +V+I AG ++ G +R +L N I K + I
Sbjct: 74 HTAKIVSGKDY-------SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126
Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
K+ P+ + + + K ++ G LD R + + V+
Sbjct: 127 KHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182
Query: 193 V 193
Sbjct: 183 S 183
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 104 bits (262), Expect = 3e-27
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
+KVA++G+ G IG + L L L + LYD+ G A D+ H +
Sbjct: 10 KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAI 140
AL +D VI+ AG+ + PG +R+DL N+ I++++ I KYCP
Sbjct: 68 AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+ +++NP++ +V +A + G+ LD R + + A +V+
Sbjct: 128 IIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSP 177
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 103 bits (260), Expect = 7e-27
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
E VP K+ V+G G +G A+ + + L LAL D+ G D+ H + T
Sbjct: 15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73
Query: 78 RSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
V+ Y +S +VII AG ++ G +R +L N I K + + KY
Sbjct: 74 PKIVSSKDY-------SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
P + ++SNPV+ I V K + + ++ G LD R + + V+
Sbjct: 127 SPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHP 181
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 102 bits (256), Expect = 2e-26
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 22/177 (12%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
K+ ++G+ G IG +A L+ L + L+DI G A D H + +V+
Sbjct: 5 AKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS 62
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCP 137
G N L +DVVI+ AG + PG + RDDL +N I+ ++ I K CP
Sbjct: 63 G--SNTY--DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP 118
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
NA + +++NPV+ + ++ + + K+ G+ LD R K + + K NV
Sbjct: 119 NAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCP 171
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 101 bits (255), Expect = 2e-26
Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 17/177 (9%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPGVAADVGHINTRSE 80
+ E+ K+ V+G G +G L + + RL L D++ T G D+ N +
Sbjct: 8 NHENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNV 66
Query: 81 VAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
A S VVI + D+ N + + L A+ Y +
Sbjct: 67 EISKDL-------SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQH 118
Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
+++ + S P V I V K T+ ++ G+ LD R + +
Sbjct: 119 SVLLVASQP----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTS 171
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 101 bits (254), Expect = 4e-26
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 24/180 (13%)
Query: 30 KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVA-------ADVGHI 75
+V V GAAG I L + K P++ L L DI GV D
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMELQDCALP 62
Query: 76 NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
+ +A D+ A +D DV I+ +PR+ GM R DL N I K +A+ KY
Sbjct: 63 LLKDVIAT----DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118
Query: 136 CPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
++ V ++ NP N+ A+ K A + ++ +T LD RAK A K V
Sbjct: 119 AKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSD 175
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 101 bits (254), Expect = 4e-26
Identities = 54/182 (29%), Positives = 70/182 (38%), Gaps = 26/182 (14%)
Query: 30 KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTP------GVA---ADVG 73
+VAV GAAG I L +L K P++ L L +I N GV D
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64
Query: 74 HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
A A +D+DV ++ PR PGM R DL NA I AI
Sbjct: 65 FPLLAGMTAH----ADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
N V ++ NP N+ IA K A + K + LD RA + A K
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177
Query: 193 VA 194
V+
Sbjct: 178 VS 179
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 99.3 bits (248), Expect = 3e-25
Identities = 51/181 (28%), Positives = 71/181 (39%), Gaps = 26/181 (14%)
Query: 30 KVAVLGAAGGIGQPLAL------LMKLNPLVSRLALYDIANTPGVAA---------DVGH 74
+VAV GAAG IG L ++ + V L L +I + A D
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI-LQLLEI--PQAMKALEGVVMELEDCAF 62
Query: 75 INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
A D A +D+D ++ PRK GM R DL +N I + A+A+
Sbjct: 63 PLLAGLEAT----DDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118
Query: 135 YCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
+ V ++ NP N+ IA K A N + +T LD RAK A K V
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGV 175
Query: 194 A 194
Sbjct: 176 D 176
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 99.1 bits (247), Expect = 7e-25
Identities = 50/184 (27%), Positives = 67/184 (36%), Gaps = 22/184 (11%)
Query: 30 KVAVLGAAGGIGQPLALL------MKLNPLVSRLALYDIANTP----GVA---ADVGHIN 76
+AV GAAG I L + ++ L L + GVA D +
Sbjct: 34 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
R G + ED D ++ PR PGM R L +IN I D A+
Sbjct: 93 LREVSIG----IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148
Query: 137 P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAG 195
N V ++ NP N+ I K A K +T LD RAK A KA V
Sbjct: 149 SKNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDK 205
Query: 196 LLKL 199
+ +
Sbjct: 206 VSNV 209
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 96.8 bits (242), Expect = 2e-24
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----INTRSEVA 82
KV V+G G +G A + L S L L D A D+ H TR
Sbjct: 2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G+ L D+ VVI+ AG +KPG +R DL NA I ++L I + P+A++
Sbjct: 61 GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+ SNPV+ + ++ + + G T LD R + A A V+
Sbjct: 114 VTSNPVD----LLTDLATQLAPGQ--PVIGSGTVLDSARFRHLMAQHAGVDG 159
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 93.3 bits (233), Expect = 4e-23
Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 25/178 (14%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH------INTRSE 80
RK+ ++G G +G +A + + D D +
Sbjct: 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ + AL D+DVVI G + P R + +V+ + + + +
Sbjct: 61 INDW-------AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG 113
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
+ ++ +ISNPV+ + +F+ + K+ G T LD R + +++
Sbjct: 114 FHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDP 167
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 50.5 bits (120), Expect = 1e-07
Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 30/152 (19%)
Query: 25 SVPDRKVAVLGAAGGIGQPLAL---LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
S+ K+A +G G G +L L + +ALYD+ A I S
Sbjct: 2 SLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLD--FEAAQKNEVIGNHSGN 58
Query: 82 AG--YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNINAG---- 123
Y L +AL +D+VII P + G+ + + G
Sbjct: 59 GRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIR 118
Query: 124 ------IVKDLCSAIAKYCPNAIVNMISNPVN 149
I ++ AI Y P + V +NP++
Sbjct: 119 GLRAVPIFAEIARAIRDYAPESWVINYTNPMS 150
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 49.4 bits (117), Expect = 2e-07
Identities = 33/208 (15%), Positives = 58/208 (27%), Gaps = 34/208 (16%)
Query: 30 KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI-ANTPGVAADVGH--INTRSEVA 82
+ + G G P L LL L + +L LYD A I ++
Sbjct: 30 SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 88
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
+ +A D D V+ V + D+ + G+
Sbjct: 89 EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSI 148
Query: 125 --VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT------L 176
V ++ + KY P+A + SNP + + N + L
Sbjct: 149 GGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPVGIEDRMAQIL 208
Query: 177 DVVRAKTFYAGKANVNVAGLLKLLTHKN 204
+ K +N G + +
Sbjct: 209 GLSSRKEMKVRYYGLNHFGWWTSIQDQE 236
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 48.6 bits (115), Expect = 4e-07
Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 28/147 (19%)
Query: 30 KVAVLGAAGGI--GQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTR-SEVAG-- 83
K+A +G L+ + + L V L L DI VG + R E AG
Sbjct: 9 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 68
Query: 84 --YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNI--------N 121
+AL+ +D V V P K G+ +
Sbjct: 69 IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 128
Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPV 148
++ D+ + + CP+A + +NP
Sbjct: 129 IPVILDIIRDMEELCPDAWLINFTNPA 155
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 46.0 bits (108), Expect = 3e-06
Identities = 26/152 (17%), Positives = 41/152 (26%), Gaps = 34/152 (22%)
Query: 30 KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIA--NTPGVAADVGHINTRSEVAG 83
K+ ++GA G ++ L K L S + L DI +
Sbjct: 5 KIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL 63
Query: 84 -YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
+ L + D+D VI A V + + G
Sbjct: 64 KFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTF 123
Query: 125 --------VKDLCSAIAKYCPNAIVNMISNPV 148
D+ I K P A +NP+
Sbjct: 124 SNYNQLKYFVDIARKIEKLSPKAWYLQAANPI 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-05
Identities = 32/173 (18%), Positives = 47/173 (27%), Gaps = 74/173 (42%)
Query: 42 QPLALLMKLNPLVSRLALYDI---ANTPGVAADVGHINTRS--E------VAGYMGNDQL 90
QP AL L+ + A D+ P A GH S E +A M
Sbjct: 1733 QP-ALT-----LMEKAAFEDLKSKGLIPADATFAGH----SLGEYAALASLADVM----- 1777
Query: 91 GQALEDS-DVV-----IIPAGVPRKP-GMTRDDLFNINAG-IVKDLCSAIAKYCPNAIVN 142
++E +VV + VPR G + + IN G + +Y +V
Sbjct: 1778 --SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY----VVE 1831
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAG 195
+ V E+ N NV
Sbjct: 1832 RVGKRTGWLV----EI------------------------------VNYNVEN 1850
Score = 35.0 bits (80), Expect = 0.014
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVR----AKTFYAG 187
T A +V+ +A + + G + LD+V T + G
Sbjct: 1638 TSKAAQDVWNRADNHFKDTY-GFSILDIVINNPVNLTIHFG 1677
Score = 34.3 bits (78), Expect = 0.029
Identities = 48/259 (18%), Positives = 71/259 (27%), Gaps = 115/259 (44%)
Query: 17 GARG---YSSESVPDRKVAVLGAAGGIGQP---LAL-----------LMKLN---PLVSR 56
G R Y + S+P + G P L++ + K N P +
Sbjct: 307 GVRCYEAYPNTSLPPSILE-DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 57 L--ALYDIANTP------GVAADVGHINT--RSEVAGYMGNDQ----------------- 89
+ +L N G + +N R A G DQ
Sbjct: 366 VEISLV---NGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLDQSRIPFSERKLKFSNRFL 421
Query: 90 ----------LGQALE--DSDV----VIIPA---GVPRKPGMTRD--DLFNINAGIVKDL 128
L A + + D+ V A +P T D DL ++ I + +
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSDLRVLSGSISERI 479
Query: 129 CSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
I I PV +T A T+ LD F
Sbjct: 480 VDCI-----------IRLPVKWETTTQFKA-------TH---------ILD------FGP 506
Query: 187 GKANVNVAGLLKLLTHKNL 205
G +GL LTH+N
Sbjct: 507 GG----ASGLGV-LTHRNK 520
Score = 30.4 bits (68), Expect = 0.48
Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 54/136 (39%)
Query: 116 DLFNINAGIVKDLCSAIA--------------KYCPNA--IVNMISNPVN-------STV 152
DL+ +V DL A K I+ + NP N ++
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 153 PIAA-----------EVFKKAGTYNEKKLF----GVTTL--DVVRA---------KTFYA 186
PI+ V K + +L G T +V A ++F+
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 187 GKANVNVAGLLKLLTH 202
+V + +L
Sbjct: 295 -----SVRKAITVLFF 305
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 37.6 bits (88), Expect = 0.002
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
K+A+ GA+G +G+ L + P + + D +P + D G + G D
Sbjct: 9 KIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ--TGVALTDD 66
Query: 90 LGQALEDSDVVI 101
+ + ++D +I
Sbjct: 67 IERVCAEADYLI 78
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 36.8 bits (86), Expect = 0.003
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
++ V+GA G +G+ L ++ V A+ + V D + + G D
Sbjct: 23 RLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFL-GVRITDD 81
Query: 90 LGQALEDSDVVI 101
A +++ ++
Sbjct: 82 PESAFSNTEGIL 93
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 36.8 bits (86), Expect = 0.003
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
+VA+ GA G +G+ L V A + + + +D G + + G
Sbjct: 7 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKT-GVTVQSS 65
Query: 90 LGQALEDSDVVI 101
L +D DV I
Sbjct: 66 LDAVKDDFDVFI 77
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 36.4 bits (83), Expect = 0.005
Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 44/172 (25%)
Query: 20 GYSSESVPDRKVAVLGAAGGIGQPLALLM------KLNPLVSRLALYDI--ANTPGVAAD 71
K++++GA G + L L+ +L+ + + + D+
Sbjct: 4 DKIHHHHHHMKISIIGA-GSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYIL 62
Query: 72 VGHINTRSEVAG-YMGNDQLGQALEDSDVVII-------------------PAGVPRKPG 111
+ L +A++ +D +I V K G
Sbjct: 63 ARKYVEELNSPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHG 122
Query: 112 MTRDDLFNINAGI---------------VKDLCSAIAKYCPNAIVNMISNPV 148
R + ++ + K P A + +NPV
Sbjct: 123 YYRGIDSQELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPV 174
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.005
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 125 VKDLCSAIAKYCPNAIVNMISNP---VNSTV 152
+K L +++ Y + S P + +T+
Sbjct: 22 LKKLQASLKLYADD------SAPALAIKATM 46
Score = 33.4 bits (75), Expect = 0.022
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 47 LMKLNPLVSRLALY--DIANTPGVAADVGHINTRSE 80
L KL + L LY D A P +A I E
Sbjct: 22 LKKLQ---ASLKLYADDSA--PALA-----IKATME 47
Score = 28.0 bits (61), Expect = 1.7
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 10/30 (33%)
Query: 7 RSVKTLA---KPAGARGYSSESVPDRKVAV 33
+++K L K Y+ +S P +A+
Sbjct: 20 QALKKLQASLKL-----YADDSAP--ALAI 42
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 35.9 bits (82), Expect = 0.006
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 30 KVA-VLGAAGGIGQPLA-LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
VA ++G G IG LA +L + +Y +A A
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR-PAWHEDNPINYVQCDISDP 60
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
D L V V T + N+ + +++ A+ CPN
Sbjct: 61 DDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPN 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.007
Identities = 29/216 (13%), Positives = 56/216 (25%), Gaps = 77/216 (35%)
Query: 49 KLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS----------- 97
NP L++ +A + + ++ D+L +E S
Sbjct: 324 TTNPRR--LSI--------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 98 ---DVVIIPAGV--PRK------PGMTRDDLFNINAGIVKDLC--SAIAKY--------- 135
+ + P P + + D+ + V L S + K
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV----VNKLHKYSLVEKQPKESTISIP 429
Query: 136 ---------CPN------AIVNMISNPV----NSTVPIAAE--VF-------KKAGTYNE 167
N +IV+ + P + +P + + K
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 168 KKLFGVTTLDV--VRAKTFYAGKANVNVAGLLKLLT 201
LF + LD + K + A +L L
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 34.8 bits (80), Expect = 0.011
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
V +LGA G I + + + + + A P N++ + + +
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLF---ARQPAKIHKPYPTNSQIIMGDVLNHAA 81
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTR 114
L QA++ D+V
Sbjct: 82 LKQAMQGQDIVYANLTGEDLDIQAN 106
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 33.4 bits (76), Expect = 0.037
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 29 RKVAVLGAAGGIGQPL--ALLMKLNP---LVSRLALYDIANTPGVAADVGHINTRSEVAG 83
K+ + G G IG+ + A L +P L ++ + + +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 84 YMGNDQLGQALEDSDVVIIPAGVP 107
++++ L+ D+VI P
Sbjct: 65 MEEHEKMVSVLKQVDIVISALPFP 88
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 32.7 bits (75), Expect = 0.047
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 13/105 (12%)
Query: 14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----A 69
+ G + +V V+GA G + + L+S L V
Sbjct: 7 HHHHSSGRENLYFQGMRVLVVGANGKVAR---------YLLSELKNKGHEPVAMVRNEEQ 57
Query: 70 ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTR 114
S++ + A D V+ AG G +
Sbjct: 58 GPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSGPHTGADK 102
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 32.7 bits (75), Expect = 0.054
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY---DIANTPGVAADVGHINTRSEVAGYM 85
++V + GA G G+ L + P ++++ +A P + VG +
Sbjct: 6 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPL---------- 55
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ L Q D G K + + ++ DL A+ K
Sbjct: 56 -AELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDF----DLPLAVGKRA 101
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 32.5 bits (75), Expect = 0.089
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
A +++++VII + F+ V+ + + +A +I +
Sbjct: 67 SKAAYKEAELVIIATPTNYNSR---INYFDTQH--VETVIKEVLSVNSHAT--LI---IK 116
Query: 150 STVPI--AAEVFKKAGTYN 166
ST+PI E+ +K T
Sbjct: 117 STIPIGFITEMRQKFQTDR 135
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 32.2 bits (74), Expect = 0.096
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
A ++D VII P + FN + V+ + + + PNA++ +
Sbjct: 103 KHDAYRNADYVIIATPTDYDPK---TNYFNTST--VEAVIRDVTEINPNAVM-----IIK 152
Query: 150 STVPI--AAEVFKKAGTYN 166
ST+P+ ++ ++ G N
Sbjct: 153 STIPVGFTRDIKERLGIDN 171
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 32.2 bits (73), Expect = 0.11
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 30 KVAVLGAAGGIGQPL--ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
K+ +LG G IG+ + A + NP + + A P ++ V G+
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 88 ----DQLGQALEDSDVVIIPAG 105
+ L +A++ D+VI AG
Sbjct: 64 INDHETLVKAIKQVDIVICAAG 85
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 31.9 bits (72), Expect = 0.11
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 30 KVAVLGAAGGIGQPLA--LLMKLNPLV-------SRLALYDIANTPGVAADVGHINTRSE 80
+ +LGAAG I Q L LL + + +I + V G
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGX 66
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAG 105
+ QA+ +++VV + A
Sbjct: 67 LE---------QAVTNAEVVFVGAM 82
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 30.7 bits (70), Expect = 0.26
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
+ V ++GA G +G +A L + + + V Y+G
Sbjct: 139 EFSVGIMGA-GVLGAKVA---------ESLQAWG-FPLRCWSR---SRKSWPGVESYVGR 184
Query: 88 DQLGQALEDSDVVI 101
++L L + V+I
Sbjct: 185 EELRAFLNQTRVLI 198
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 30.7 bits (69), Expect = 0.26
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY 84
++ VAVLG G +G +A K L +++ + + A +
Sbjct: 152 TIHGANVAVLGL-GRVGMSVA--RKFAALGAKVKVGA--RESDLLARI-----AEMGMEP 201
Query: 85 MGNDQLGQALEDSDVVI--IPAGV 106
+ Q L D DV I IPA V
Sbjct: 202 FHISKAAQELRDVDVCINTIPALV 225
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 30.7 bits (69), Expect = 0.29
Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 7/150 (4%)
Query: 29 RKVAVLGAAGGIGQPL--ALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGY 84
+V ++G G IG+ + A + +P R + + + + + A
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASL 64
Query: 85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
+ +L AL+ DVVI + L + A I ++ P+
Sbjct: 65 DDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKE---AGNIKRFLPSEFGMDP 121
Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174
++ P + K + +
Sbjct: 122 DIMEHALQPGSITFIDKRKVRRAIEAASIP 151
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 30.4 bits (69), Expect = 0.35
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
+ + + + R + +LG G IGQ +A + GV+ R
Sbjct: 131 QSHPYQGLKGRTLLILGT-GSIGQHIA---------HTGKHFG-MKVLGVSR---SGRER 176
Query: 79 SEVAGYMGNDQLGQALEDSDVVI 101
+ L + L +DV++
Sbjct: 177 AGFDQVYQLPALNKMLAQADVIV 199
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 30.3 bits (68), Expect = 0.36
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
E+ K+ + G G IG + +KL + + T + + +
Sbjct: 6 EENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTT-LLDEFQSLGAIIVK 64
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVP 107
+++L + ++ DVVI P
Sbjct: 65 GELDEHEKLVELMKKVDVVISALAFP 90
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 30.1 bits (68), Expect = 0.48
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALYDIA 63
V + VLG AG IGQ + + K NP +L + DI+
Sbjct: 30 QSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHVVDIS 69
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 29.9 bits (67), Expect = 0.70
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNIN-AGIVKDLCSAIAKYCPNAI-VNMISNPV 148
+ D ++ G+ + D N++ +L A+ K PN + VN PV
Sbjct: 569 ELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPV 627
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.4 bits (64), Expect = 1.3
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 16/93 (17%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYD------IANTPGVAADVGHINTRSEVAG 83
K+A+ GA G G A+ + G V
Sbjct: 5 KIAIFGATGQTGLTTL----------AQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGD 54
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
+ + + + D VI+ G T
Sbjct: 55 VLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVM 87
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 28.5 bits (63), Expect = 1.8
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 21 YSSESVPDRKVAVLGAAGGIGQPL--ALL 47
S P +V + GA G IGQ + A L
Sbjct: 3 VSPVPSPKGRVLIAGATGFIGQFVATASL 31
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 28.3 bits (62), Expect = 1.8
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 33/142 (23%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNP-----LVSRLA--LYDIANTPGVAADVGHINTRSEVA 82
KV V G G L+ L +++ A G +N +
Sbjct: 4 KVCVCG-GGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQ 62
Query: 83 GYMGN------DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ + A+ +DVVI+ + A + A+A Y
Sbjct: 63 TEVKSRPKVITKDPEIAISGADVVILT----------------VPAFAHEGYFQAMAPYV 106
Query: 137 -PNAIVNMISNPVNSTVPIAAE 157
+A++ + P +
Sbjct: 107 QDSALI--VGLPSQAGFEFQCR 126
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 28.0 bits (63), Expect = 1.9
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 17/98 (17%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLAL---YD---IANTPGVAADVGHINTRSEVAG 83
K+ ++G+ G +G+ L + Y A ++
Sbjct: 2 KIFIVGSTGRVGKSLL----------KSLSTTDYQIYAGARKVEQVPQYNNVKAV-HFDV 50
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
+++ + L D +I +G K + D +
Sbjct: 51 DWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVK 88
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 28.1 bits (63), Expect = 2.3
Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 12/115 (10%)
Query: 29 RKVAVLGAAGGIGQPLA-LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
+K V+ + +G+PLA LL V + + E G
Sbjct: 178 KKCIVINRSEIVGRPLAALLANDGATVY-SVDVNNIQKFTRGESLKLNKHHVEDLGEYSE 236
Query: 88 DQLGQALEDSDVVIIPAGVPR---KPGMTRDDLFNINAGI-------VKDLCSAI 132
D L + DSDVVI ++ IN VK+ S
Sbjct: 237 DLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKASLY 291
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 28.0 bits (62), Expect = 2.3
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 57 LALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQALEDSDVV 100
+ + D+GH R+ +AG N + +ALE +++
Sbjct: 154 CVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEII 213
Query: 101 IIPAGVPRKPGMTRDDL 117
+ A RKP +
Sbjct: 214 PLFAIKQRKPEFIKKTF 230
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 27.7 bits (61), Expect = 2.9
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
+ VA+LGA G +G + + S L I P R + G D
Sbjct: 12 KTVAILGAGGKMGARITRKIHD----SAHHLAAIEIAPEGRD-------RLQGMGIPLTD 60
Query: 89 QLGQALEDSDVVII 102
++++DVV++
Sbjct: 61 -GDGWIDEADVVVL 73
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo
sapiens} SCOP: c.2.1.2
Length = 272
Score = 27.6 bits (62), Expect = 2.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
SV V + GA GIG+ A + L S+L L+DI
Sbjct: 28 SVTGEIVLITGAGHGIGRLTAY--EFAKLKSKLVLWDI 63
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 27.6 bits (61), Expect = 3.2
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 29 RKVAVLGAAGGIGQPL--ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG--- 83
++ ++GA G IG+ + A L L L +T ++ + + +G
Sbjct: 5 SRILLIGATGYIGRHVAKASL-DLGHPTFLLV---RESTASSNSEKAQLLESFKASGANI 60
Query: 84 ----YMGNDQLGQALEDSDVVI 101
+ L +A+++ DVVI
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVI 82
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 27.4 bits (61), Expect = 3.2
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 39/120 (32%)
Query: 30 KVAVLGAAGGIGQPL--ALL-------------MKLNPLVSRLALYDIANTPGVAADVGH 74
K+ ++GA+G +G L L K+ L + ADV
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKV--------KKADVSS 57
Query: 75 INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
+ D++ + + +D VI PG D+++ + + + K
Sbjct: 58 L------------DEVCEVCKGADAVISAFN----PGWNNPDIYDETIKVYLTIIDGVKK 101
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 26.9 bits (59), Expect = 4.5
Identities = 20/96 (20%), Positives = 26/96 (27%), Gaps = 22/96 (22%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSR----LALY----DIANTPGVAADVGHINTRSEV 81
K+AVLGA G G + R LA+ A+ G
Sbjct: 2 KIAVLGATGRAGSAIVAE-----ARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLT 56
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDL 117
L+ D V+ VP G L
Sbjct: 57 EA---------DLDSVDAVVDALSVPWGSGRGYLHL 83
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar
biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A
{Thermus thermophilus} PDB: 3oa0_A*
Length = 312
Score = 26.8 bits (59), Expect = 4.6
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMG-N 87
+ A+ G AG I +K V +A D A G+ + +E +
Sbjct: 5 RFALTGLAGYIAPRHLKAIKEVGGV-LVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYL 63
Query: 88 DQLGQALEDSDVVII 102
+ L E D + I
Sbjct: 64 EDLRDRGEGVDYLSI 78
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 26.9 bits (60), Expect = 5.3
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 7 RSVKTLAKPAGARGYSSESVPDRKVAVLGA---AGGI 40
+S + P+GA ++ + P V VLG GI
Sbjct: 295 KSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGI 331
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 26.7 bits (59), Expect = 5.5
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 30 KVAVLGAAGGIGQPLA-LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
V V GA+G GQ + L + + L + +G + D
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGL---VRSAQGKEKIGG-EADVFIGDITDAD 61
Query: 89 QLGQALEDSDVVIIPAGVPRKPGMTRD 115
+ A + D ++I K D
Sbjct: 62 SINPAFQGIDALVILTSAVPKMKPGFD 88
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 26.9 bits (60), Expect = 5.7
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
++ ++ +++ + G G IGQ LA L + + P
Sbjct: 128 LPMTTSTLTGQQLLIYGT-GQIGQSLAAKAS--ALGMHVIGVNTTGHPADHFHETV---- 180
Query: 79 SEVAGYMGNDQLGQALEDSDVVII 102
AL ++ ++
Sbjct: 181 -------AFTATADALATANFIVN 197
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 26.7 bits (59), Expect = 6.1
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
+ V +LGA+G G+ L + L S++ L I + + N EV + D
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTL--IGRRKLTFDEEAYKNVNQEVVDFEKLD 76
Query: 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
A + DV G R + ++ D A+
Sbjct: 77 DYASAFQGHDVGFCCLGTTRG-KAGAEGFVRVDR----DYVLKSAELA 119
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 26.4 bits (57), Expect = 6.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 30 KVAVLGAAGGIGQPLALLM 48
+VA+LG G +G+ LAL +
Sbjct: 2 RVALLGGTGNLGKGLALRL 20
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional
enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid
beta oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 26.5 bits (59), Expect = 7.4
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 7 RSVKTLAKPAGARGYSSESVPDRKVAVLGAA---GGI 40
+S + P+GA ++ + P V VLG GI
Sbjct: 16 KSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGI 52
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 26.2 bits (58), Expect = 8.3
Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 29 RKVAVLGAAGGIGQPLA-LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
+++ V GAAG +G+ + L + ++ L D++ + + + ++A
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILR---LADLSPLDPAGPNEECV--QCDLADA--- 55
Query: 88 DQLGQALEDSDVVIIPAGVP 107
+ + + D ++ G+
Sbjct: 56 NAVNAMVAGCDGIVHLGGIS 75
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 26.3 bits (59), Expect = 8.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 94 LEDSDVVIIPAGVPRKPGMT 113
DVV++ +G G T
Sbjct: 443 AHKGDVVVMVSGALVPSGTT 462
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 26.4 bits (58), Expect = 8.6
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 28/118 (23%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
+ + GA G +G+ N L + L + T +V ++
Sbjct: 2 NIVITGAKGFVGK--------N-LKADL----TSTTDHHIFEVHRQTKE---------EE 39
Query: 90 LGQALEDSDVVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
L AL +D ++ AGV R + N + + + + + + S
Sbjct: 40 LESALLKADFIVHLAGVNRPEHD----KEFSLGNVSYLDHVLDILTRNTKKPAILLSS 93
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 26.1 bits (58), Expect = 9.7
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 30 KVA-VLGAAGGIGQPLAL-LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
K + A GGIG + L+K N + D P A++ IN + + + +
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKRNLKN--FVILDRVENPTALAELKAINPKVNITFHTYD 63
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
+ ++ + + + T D L N AGI+ D
Sbjct: 64 V----TVPVAESKKLLKKIFDQLK-TVDILIN-GAGILDD 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.379
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,121,098
Number of extensions: 198526
Number of successful extensions: 1023
Number of sequences better than 10.0: 1
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 152
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)