BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028439
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYP|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|2 Chain 2, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|M Chain M, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|1 Chain 1, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|M Chain M, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|T Chain T, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|M Chain M, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|1 Chain 1, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|M Chain M, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|1 Chain 1, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|M Chain M, Proteasome Inhibition By Fellutamide B
pdb|3D29|1 Chain 1, Proteasome Inhibition By Fellutamide B
pdb|3E47|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|M Chain M, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|1 Chain 1, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|N Chain N, Proteasome Activator Complex
pdb|1VSY|2 Chain 2, Proteasome Activator Complex
pdb|3L5Q|R Chain R, Proteasome Activator Complex
pdb|3L5Q|4 Chain 4, Proteasome Activator Complex
pdb|3MG4|M Chain M, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|1 Chain 1, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|M Chain M, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|1 Chain 1, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|M Chain M, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|1 Chain 1, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|M Chain M, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|1 Chain 1, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|M Chain M, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|1 Chain 1, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|M Chain M, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|AA Chain a, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|N Chain N, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|M Chain M, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|AA Chain a, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|M Chain M, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|AA Chain a, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 233
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 54 ASLLFHR-SQIPPLTLPILSAFFLLGFLGTSSQFFGYA---GIYYSSPTLSTA 102
A++++ R S++ PL +A + G QF Y G+ YSSPTL+T
Sbjct: 97 ATVMYQRRSKMNPL----WNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATG 145
>pdb|1G0U|M Chain M, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|1 Chain 1, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|M Chain M, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|0 Chain 0, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|M Chain M, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|0 Chain 0, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|7 Chain 7, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 266
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 54 ASLLFHR-SQIPPLTLPILSAFFLLGFLGTSSQFFGYA---GIYYSSPTLSTA 102
A++++ R S++ PL +A + G QF Y G+ YSSPTL+T
Sbjct: 130 ATVMYQRRSKMNPL----WNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATG 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,352,642
Number of Sequences: 62578
Number of extensions: 181496
Number of successful extensions: 444
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 3
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)