Query 028439
Match_columns 209
No_of_seqs 210 out of 1354
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2.2E-29 4.8E-34 217.9 22.6 205 3-207 9-219 (358)
2 PRK11272 putative DMT superfam 99.9 5.7E-22 1.2E-26 167.5 20.5 170 3-202 3-175 (292)
3 PRK11689 aromatic amino acid e 99.9 2.7E-22 5.9E-27 169.7 17.4 178 5-205 2-184 (295)
4 PRK11453 O-acetylserine/cystei 99.9 2.4E-21 5.2E-26 164.2 20.4 166 8-206 5-172 (299)
5 TIGR00688 rarD rarD protein. T 99.9 2.3E-21 5.1E-26 160.6 18.2 163 7-201 2-170 (256)
6 TIGR00950 2A78 Carboxylate/Ami 99.9 4E-21 8.8E-26 158.9 17.2 155 19-205 1-156 (260)
7 PRK15430 putative chlorampheni 99.9 6.8E-21 1.5E-25 161.3 16.0 164 4-200 5-172 (296)
8 PRK10532 threonine and homoser 99.8 5.6E-19 1.2E-23 149.3 18.8 169 3-205 8-176 (293)
9 TIGR00817 tpt Tpt phosphate/ph 99.8 1.9E-18 4E-23 146.5 21.7 156 23-205 18-175 (302)
10 PTZ00343 triose or hexose phos 99.8 6.3E-17 1.4E-21 140.1 21.1 156 20-204 62-221 (350)
11 TIGR03340 phn_DUF6 phosphonate 99.7 9.4E-17 2E-21 134.9 17.4 168 9-205 3-172 (281)
12 PF00892 EamA: EamA-like trans 99.7 2.9E-16 6.3E-21 115.1 10.8 124 17-148 1-125 (126)
13 COG0697 RhaT Permeases of the 99.7 6.8E-15 1.5E-19 122.4 20.2 174 1-200 1-177 (292)
14 PF06027 DUF914: Eukaryotic pr 99.6 2E-14 4.3E-19 123.1 17.5 172 17-205 23-196 (334)
15 COG2510 Predicted membrane pro 99.5 4.4E-14 9.5E-19 103.3 9.7 134 8-148 4-138 (140)
16 TIGR00950 2A78 Carboxylate/Ami 99.5 2.7E-12 5.8E-17 106.0 16.2 131 5-144 126-259 (260)
17 TIGR00776 RhaT RhaT L-rhamnose 99.5 5.3E-12 1.2E-16 106.7 16.9 171 9-199 3-174 (290)
18 PF13536 EmrE: Multidrug resis 99.4 1.2E-12 2.5E-17 95.7 8.8 103 41-150 2-107 (113)
19 COG2962 RarD Predicted permeas 99.4 7.2E-11 1.6E-15 97.8 17.4 167 1-199 1-170 (293)
20 PRK11272 putative DMT superfam 99.3 2.2E-10 4.7E-15 96.8 16.4 136 6-149 149-285 (292)
21 PRK10532 threonine and homoser 99.3 3.4E-10 7.3E-15 95.8 17.4 134 6-149 147-281 (293)
22 COG5006 rhtA Threonine/homoser 99.3 3.5E-10 7.5E-15 92.0 15.6 163 8-204 13-175 (292)
23 PLN00411 nodulin MtN21 family 99.2 2.4E-09 5.2E-14 93.1 17.1 136 8-151 190-330 (358)
24 PRK11689 aromatic amino acid e 99.1 2.4E-09 5.2E-14 90.7 16.0 132 7-149 156-287 (295)
25 KOG2765 Predicted membrane pro 99.1 1.8E-10 3.8E-15 98.3 8.4 108 79-204 167-274 (416)
26 PF08449 UAA: UAA transporter 99.1 1.4E-08 3.1E-13 86.3 19.0 166 22-206 15-183 (303)
27 PRK11453 O-acetylserine/cystei 99.1 1.2E-08 2.5E-13 86.6 17.0 136 7-148 143-286 (299)
28 KOG4510 Permease of the drug/m 99.0 2.7E-11 5.9E-16 99.1 -0.5 176 17-208 47-222 (346)
29 TIGR00817 tpt Tpt phosphate/ph 99.0 3.2E-09 7E-14 90.0 11.8 138 6-149 144-293 (302)
30 TIGR03340 phn_DUF6 phosphonate 99.0 5.1E-09 1.1E-13 88.0 10.6 133 6-146 143-280 (281)
31 PF03151 TPT: Triose-phosphate 98.9 1.3E-07 2.9E-12 71.9 14.7 132 9-146 2-150 (153)
32 PTZ00343 triose or hexose phos 98.9 2.2E-07 4.8E-12 80.6 16.9 137 6-148 193-347 (350)
33 COG0697 RhaT Permeases of the 98.7 9.2E-07 2E-11 73.3 16.5 132 6-148 153-286 (292)
34 TIGR00776 RhaT RhaT L-rhamnose 98.7 3.5E-07 7.7E-12 77.4 13.5 133 6-148 151-287 (290)
35 PRK15430 putative chlorampheni 98.7 7E-07 1.5E-11 75.6 15.2 131 10-148 152-284 (296)
36 PF04142 Nuc_sug_transp: Nucle 98.7 5E-07 1.1E-11 74.7 13.5 130 67-205 13-142 (244)
37 PRK15051 4-amino-4-deoxy-L-ara 98.6 7.2E-07 1.6E-11 64.9 10.7 68 75-148 40-108 (111)
38 COG5006 rhtA Threonine/homoser 98.4 1E-05 2.2E-10 66.3 13.2 132 5-145 146-278 (292)
39 KOG2234 Predicted UDP-galactos 98.4 0.00013 2.8E-09 62.5 20.1 183 7-204 15-210 (345)
40 PRK02971 4-amino-4-deoxy-L-ara 98.4 1.3E-05 2.8E-10 59.9 12.5 117 7-148 2-121 (129)
41 KOG1441 Glucose-6-phosphate/ph 98.1 1E-05 2.2E-10 69.1 8.4 151 25-201 35-187 (316)
42 KOG4314 Predicted carbohydrate 98.0 1.1E-05 2.3E-10 64.0 5.3 96 82-201 64-159 (290)
43 PF06027 DUF914: Eukaryotic pr 97.9 0.00033 7E-09 60.5 12.7 141 3-150 164-306 (334)
44 PF08449 UAA: UAA transporter 97.7 0.0016 3.4E-08 55.4 14.4 135 8-148 155-296 (303)
45 PRK13499 rhamnose-proton sympo 97.7 0.0026 5.6E-08 55.1 15.7 181 1-194 1-191 (345)
46 TIGR00688 rarD rarD protein. T 97.7 0.0014 3E-08 54.1 13.4 101 11-118 150-255 (256)
47 KOG3912 Predicted integral mem 97.7 0.0018 3.8E-08 54.2 13.2 167 20-204 16-203 (372)
48 PF06800 Sugar_transport: Suga 97.6 0.00085 1.9E-08 56.0 11.3 132 5-145 136-267 (269)
49 PF06800 Sugar_transport: Suga 97.6 0.0024 5.2E-08 53.4 14.0 116 69-198 43-159 (269)
50 KOG2766 Predicted membrane pro 97.6 1E-06 2.2E-11 72.2 -6.2 165 16-204 28-193 (336)
51 KOG1444 Nucleotide-sugar trans 97.6 0.014 2.9E-07 49.7 17.4 155 20-201 25-181 (314)
52 KOG1443 Predicted integral mem 97.4 0.00054 1.2E-08 57.7 7.0 114 65-204 77-191 (349)
53 PRK10650 multidrug efflux syst 97.2 0.011 2.4E-07 42.8 11.3 63 79-147 42-106 (109)
54 PRK10452 multidrug efflux syst 97.2 0.0024 5.2E-08 47.1 7.5 68 76-149 34-103 (120)
55 PF05653 Mg_trans_NIPA: Magnes 97.2 0.0053 1.1E-07 52.3 10.8 121 1-149 1-122 (300)
56 KOG1441 Glucose-6-phosphate/ph 97.2 0.0019 4.2E-08 55.3 7.9 137 5-148 161-306 (316)
57 COG2076 EmrE Membrane transpor 97.1 0.0035 7.5E-08 45.0 7.8 67 76-148 34-102 (106)
58 PRK09541 emrE multidrug efflux 97.1 0.0043 9.4E-08 45.0 8.0 66 77-148 35-102 (110)
59 PRK11431 multidrug efflux syst 96.9 0.0071 1.5E-07 43.5 8.1 64 79-148 36-101 (105)
60 COG2962 RarD Predicted permeas 96.9 0.095 2.1E-06 44.1 15.3 126 14-148 155-282 (293)
61 PRK13499 rhamnose-proton sympo 96.9 0.092 2E-06 45.6 15.6 144 5-149 172-341 (345)
62 PF04657 DUF606: Protein of un 96.8 0.05 1.1E-06 41.0 12.4 107 35-146 29-138 (138)
63 KOG1580 UDP-galactose transpor 96.8 0.0098 2.1E-07 48.7 8.4 147 37-205 54-200 (337)
64 PF10639 UPF0546: Uncharacteri 96.7 0.0037 8E-08 45.5 5.0 108 13-146 2-111 (113)
65 PF00893 Multi_Drug_Res: Small 96.5 0.01 2.2E-07 41.6 6.2 56 78-139 35-92 (93)
66 KOG4510 Permease of the drug/m 96.4 0.0021 4.6E-08 53.4 2.1 133 9-149 193-325 (346)
67 KOG2765 Predicted membrane pro 95.5 0.19 4.1E-06 43.8 10.4 139 5-149 245-390 (416)
68 TIGR00803 nst UDP-galactose tr 95.2 0.15 3.3E-06 41.1 8.6 59 81-145 162-220 (222)
69 KOG1581 UDP-galactose transpor 95.0 0.92 2E-05 38.6 12.6 148 35-204 50-199 (327)
70 KOG1580 UDP-galactose transpor 94.5 0.076 1.7E-06 43.6 4.9 73 69-147 239-311 (337)
71 COG4975 GlcU Putative glucose 93.5 0.0053 1.1E-07 50.5 -3.4 166 8-197 3-172 (288)
72 KOG2922 Uncharacterized conser 92.6 0.041 8.8E-07 46.9 0.5 119 2-149 16-136 (335)
73 KOG1581 UDP-galactose transpor 92.4 2.9 6.2E-05 35.7 11.1 109 32-148 198-312 (327)
74 KOG1442 GDP-fucose transporter 92.0 0.21 4.5E-06 42.0 3.8 146 35-203 60-211 (347)
75 KOG1444 Nucleotide-sugar trans 91.9 2.3 5E-05 36.4 10.1 136 7-148 157-299 (314)
76 KOG1583 UDP-N-acetylglucosamin 89.7 1.5 3.4E-05 36.9 6.9 131 64-205 60-192 (330)
77 KOG3912 Predicted integral mem 89.4 7.7 0.00017 33.0 10.8 138 4-147 173-332 (372)
78 COG4975 GlcU Putative glucose 87.9 0.058 1.2E-06 44.5 -2.5 133 7-148 152-284 (288)
79 COG3238 Uncharacterized protei 87.6 11 0.00023 28.9 13.4 110 35-147 33-144 (150)
80 KOG1443 Predicted integral mem 86.7 19 0.00042 30.9 11.7 134 8-147 165-313 (349)
81 PF06379 RhaT: L-rhamnose-prot 84.5 26 0.00057 30.4 14.6 183 1-195 1-191 (344)
82 PF04142 Nuc_sug_transp: Nucle 84.0 22 0.00049 29.2 13.2 120 6-125 113-235 (244)
83 COG5070 VRG4 Nucleotide-sugar 81.6 14 0.0003 30.5 8.4 117 24-146 172-293 (309)
84 KOG1582 UDP-galactose transpor 79.6 8.6 0.00019 32.6 6.8 111 34-150 218-333 (367)
85 PF07857 DUF1632: CEO family ( 74.6 43 0.00092 27.9 9.7 184 9-203 2-209 (254)
86 COG4657 RnfA Predicted NADH:ub 73.9 22 0.00047 27.7 7.1 44 139-202 114-157 (193)
87 COG5070 VRG4 Nucleotide-sugar 73.0 5.5 0.00012 32.7 3.9 107 75-200 72-178 (309)
88 TIGR00803 nst UDP-galactose tr 66.3 25 0.00054 28.1 6.5 97 101-205 8-113 (222)
89 COG3086 RseC Positive regulato 63.6 13 0.00027 28.3 3.9 54 91-148 68-121 (150)
90 PF09656 PGPGW: Putative trans 61.1 38 0.00082 21.1 5.7 47 133-204 5-51 (53)
91 PF04342 DUF486: Protein of un 57.3 70 0.0015 23.0 7.9 50 90-145 54-104 (108)
92 KOG4831 Unnamed protein [Funct 56.4 73 0.0016 23.0 7.8 112 9-147 5-123 (125)
93 PF10754 DUF2569: Protein of u 54.8 90 0.002 23.5 8.0 29 175-203 119-147 (149)
94 PRK15462 dipeptide/tripeptide 51.6 1.9E+02 0.0042 26.4 10.7 18 100-117 310-327 (493)
95 KOG1582 UDP-galactose transpor 51.4 1.6E+02 0.0034 25.2 10.2 161 18-206 54-219 (367)
96 PF07123 PsbW: Photosystem II 50.6 15 0.00032 27.5 2.4 35 175-209 104-138 (138)
97 PF05653 Mg_trans_NIPA: Magnes 42.3 52 0.0011 28.0 4.8 67 82-148 224-291 (300)
98 PRK10862 SoxR reducing system 41.7 46 0.00099 25.4 4.0 29 91-119 68-96 (154)
99 PF02694 UPF0060: Uncharacteri 34.5 34 0.00073 24.6 2.1 21 129-149 83-103 (107)
100 PF04246 RseC_MucC: Positive r 34.1 82 0.0018 23.1 4.3 28 92-119 62-89 (135)
101 PLN00082 photosystem II reacti 31.5 34 0.00073 22.1 1.5 27 175-201 32-58 (67)
102 CHL00196 psbY photosystem II p 30.9 1.1E+02 0.0024 17.5 3.6 20 179-198 8-27 (36)
103 PF08802 CytB6-F_Fe-S: Cytochr 30.3 89 0.0019 18.2 3.0 33 64-96 4-37 (39)
104 COG1742 Uncharacterized conser 29.5 45 0.00098 23.9 2.0 22 128-149 83-104 (109)
105 PRK14995 methyl viologen resis 28.4 4.3E+02 0.0093 23.6 17.0 55 90-148 287-343 (495)
106 PF06298 PsbY: Photosystem II 28.2 1.2E+02 0.0027 17.3 3.6 20 179-198 8-27 (36)
107 PLN00092 photosystem I reactio 28.1 30 0.00064 25.5 0.9 34 175-208 103-136 (137)
108 PF08370 PDR_assoc: Plant PDR 26.5 33 0.00072 22.3 0.9 30 69-98 26-57 (65)
109 PF11460 DUF3007: Protein of u 25.7 1.8E+02 0.0039 20.8 4.5 37 82-118 19-55 (104)
110 PF07857 DUF1632: CEO family ( 25.2 2.2E+02 0.0049 23.7 5.8 54 4-57 180-244 (254)
111 KOG1583 UDP-N-acetylglucosamin 24.9 68 0.0015 27.3 2.6 64 79-148 245-313 (330)
112 COG2246 Predicted membrane pro 24.2 3.1E+02 0.0066 20.4 8.1 59 66-128 8-69 (139)
113 PLN00077 photosystem II reacti 23.7 58 0.0013 23.8 1.7 34 175-208 93-127 (128)
114 PRK13240 pbsY photosystem II p 21.6 1.8E+02 0.004 17.0 3.6 17 180-196 9-25 (40)
115 KOG2922 Uncharacterized conser 21.5 2.2E+02 0.0049 24.7 5.1 67 82-148 238-305 (335)
116 PF11700 ATG22: Vacuole efflux 20.9 6.3E+02 0.014 22.9 9.7 31 173-203 124-154 (477)
117 KOG1442 GDP-fucose transporter 20.5 3.3E+02 0.0072 23.4 5.8 135 6-146 184-324 (347)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=2.2e-29 Score=217.91 Aligned_cols=205 Identities=39% Similarity=0.642 Sum_probs=165.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHH
Q 028439 3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFLG 81 (209)
Q Consensus 3 ~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~lg~~g 81 (209)
.++.++|++++.+++.+++..++.|.+++.|++|..+.++|+.+|+++++|+.+.++|++ +++.+++++..+.++|+++
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999987655432 3444578889999999998
Q ss_pred HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCC--
Q 028439 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS-- 159 (209)
Q Consensus 82 ~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~-- 159 (209)
..++.++++|++|++|++++++.+++|+++++++++++.|+++.+++.++.|++|++++++|+.++...+++.....+
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~ 168 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP 168 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence 667889999999999999999999999999999999976766666667778899999999999988754443211000
Q ss_pred CCCCC---CcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 028439 160 LPPNS---SLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSEN 207 (209)
Q Consensus 160 ~~~~~---~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~~~ 207 (209)
.+.+. +......+.++..|++++++|+++||+|++++|+..++||++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~ 219 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAF 219 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHh
Confidence 00000 0000112234567999999999999999999999999998763
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=5.7e-22 Score=167.49 Aligned_cols=170 Identities=14% Similarity=0.067 Sum_probs=139.3
Q ss_pred ccchHH-HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 028439 3 KVGLAP-VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG 81 (209)
Q Consensus 3 ~~~~~~-~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g 81 (209)
-++..+ .+.++...++||.+++++|...+ ++||..++++|+.+++++++++...+ +++ ..+++++.+....|.++
T Consensus 3 ~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~-~~~~~~~~~~~~~g~~~ 78 (292)
T PRK11272 3 FRQLLPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR--GHP-LPTLRQWLNAALIGLLL 78 (292)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh--CCC-CCcHHHHHHHHHHHHHH
Confidence 344444 35677789999999999999876 69999999999999999998876542 222 23567888889999998
Q ss_pred -HHHHHHHHHHh-hccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCC
Q 028439 82 -TSSQFFGYAGI-YYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS 159 (209)
Q Consensus 82 -~~~~~~~~~gl-~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~ 159 (209)
..++.+++.+. +++++++++++.++.|+++.+++++ +|||++++ +++|++++++|+.++... +.
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~~------ 144 (292)
T PRK11272 79 LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-GN------ 144 (292)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-cc------
Confidence 88899999999 9999999999999999999999986 69998765 599999999999887521 10
Q ss_pred CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028439 160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRN 202 (209)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~ 202 (209)
. ++...|+++.++++++||.|.+..||..++
T Consensus 145 -----------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~ 175 (292)
T PRK11272 145 -----------L-SGNPWGAILILIASASWAFGSVWSSRLPLP 175 (292)
T ss_pred -----------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 112479999999999999999999997544
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.90 E-value=2.7e-22 Score=169.69 Aligned_cols=178 Identities=14% Similarity=0.107 Sum_probs=134.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028439 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS 83 (209)
Q Consensus 5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~ 83 (209)
+.++++.++.+.++||+++++.|.+.+ ++||..+.++|+.+|++++.++. .++ +.++ +.++..+.+.++ ..
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~---~~~---~~~~-~~~~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV---GFP---RLRQ-FPKRYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc---ccc---cccc-ccHHHHHHHhHHHHH
Confidence 567788999999999999999999886 59999999999999999988752 111 1111 122344556667 88
Q ss_pred HHHHHHHHhhc----cchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCC
Q 028439 84 SQFFGYAGIYY----SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS 159 (209)
Q Consensus 84 ~~~~~~~gl~~----t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~ 159 (209)
++.+++.|+++ +++++++++.++.|+++.+++++++|||++++ |++|++++++|++++... ++..+..+
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~~~ 146 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSLAE 146 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchhhh
Confidence 88888888865 57888999999999999999999999998765 599999999999887632 11000000
Q ss_pred CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439 160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS 205 (209)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~ 205 (209)
. .....+...|+++.++|++|||+|+++.||..+++++
T Consensus 147 ~--------~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~ 184 (295)
T PRK11689 147 L--------INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG 184 (295)
T ss_pred h--------hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Confidence 0 0000122469999999999999999999998877654
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.89 E-value=2.4e-21 Score=164.19 Aligned_cols=166 Identities=14% Similarity=0.097 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 028439 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQF 86 (209)
Q Consensus 8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~~ 86 (209)
..+..+.+.++||.+++++|.+.+ ++||.++.++|+.++++.++++. + ++ +.+++ .....|+.. ..++.
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~---~~~~~---~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP---KVPLN---LLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC---CCchH---HHHHHHHHHHHHHHH
Confidence 346678889999999999999886 59999999999999887766542 1 21 12222 345567766 67777
Q ss_pred HHHHHhhc-cchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCC
Q 028439 87 FGYAGIYY-SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSS 165 (209)
Q Consensus 87 ~~~~gl~~-t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~ 165 (209)
+++.++++ .++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++... +.
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~------------ 135 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SL------------ 135 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cC------------
Confidence 88899998 58899999999999999999999999999765 599999999999887621 10
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 028439 166 LQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSE 206 (209)
Q Consensus 166 ~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~~ 206 (209)
...+....|+++.++++++|++|++++||..++++++
T Consensus 136 ----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~ 172 (299)
T PRK11453 136 ----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRP 172 (299)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 0112234799999999999999999999987776543
No 5
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.88 E-value=2.3e-21 Score=160.61 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHH-HHHHHHHHHH
Q 028439 7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IPPLTLPI-LSAFFLLGFL 80 (209)
Q Consensus 7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-----~~~~~~~~-~~~~~~lg~~ 80 (209)
|++..++++.++||.++++.|. .. ++||.++.++|+.++++++.++...+++++ .++.++++ +..+.+.|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5788999999999999999998 44 599999999999999988877654332211 11122232 4445666666
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCC
Q 028439 81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSL 160 (209)
Q Consensus 81 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~ 160 (209)
+..++.+++++++++++++++++.++.|+++++++++++|||++++ +++|++++++|+.++...++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~-------- 145 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG-------- 145 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC--------
Confidence 6899999999999999999999999999999999999999999865 59999999999988753211
Q ss_pred CCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028439 161 PPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLR 201 (209)
Q Consensus 161 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~ 201 (209)
+.. .+.+++++||+.|.+..|+..+
T Consensus 146 -----------~~~-----~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 146 -----------SLP-----WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred -----------Cch-----HHHHHHHHHHHHHHHHHhhcCC
Confidence 111 3468899999999999998754
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.87 E-value=4e-21 Score=158.86 Aligned_cols=155 Identities=18% Similarity=0.124 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccch
Q 028439 19 HVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSSP 97 (209)
Q Consensus 19 wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a 97 (209)
||.++++.|..++++.||..+.+.|+..+.+.+.++... + .+++++.+....|.++ .+++.++++|++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998877999999999999998888776422 2 2356677888999999 9999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHH
Q 028439 98 TLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVF 177 (209)
Q Consensus 98 ~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (209)
++++++.++.|+++++++.+++|||++++ ++.|++++++|+.++.. ++ ..++...
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~------------------~~~~~~~ 128 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG------------------NLSINPA 128 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC------------------cccccHH
Confidence 99999999999999999999999999765 58999999999988752 11 0112358
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439 178 GGLLLAVDCVFTSAWFIVQVRFLRNSKS 205 (209)
Q Consensus 178 G~~l~l~aa~~~a~y~vl~k~~~~~~~~ 205 (209)
|+++.++++++|+.|.+..|+..+++++
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~ 156 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKKEGP 156 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCCc
Confidence 9999999999999999999999887764
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.86 E-value=6.8e-21 Score=161.25 Aligned_cols=164 Identities=9% Similarity=-0.039 Sum_probs=130.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHH
Q 028439 4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI--P-PLTLPILSAFFLLGFL 80 (209)
Q Consensus 4 ~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~--~-~~~~~~~~~~~~lg~~ 80 (209)
++.|+++.++.+.++||.++++.|.. . ++||.++.++|+.++.+++.++...+++++. + ..+++++. ....+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHH
Confidence 56788999999999999999999975 4 5999999999999999888777544321111 0 11233332 3447777
Q ss_pred H-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCC
Q 028439 81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS 159 (209)
Q Consensus 81 g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~ 159 (209)
+ ..++.++++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++....+
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~------- 148 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG------- 148 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC-------
Confidence 7 899999999999999999999999999999999999999999765 59999999999988763211
Q ss_pred CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439 160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFL 200 (209)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~ 200 (209)
+. ..+.++++++||+|++..|+..
T Consensus 149 ------------~~-----~~~~l~aa~~~a~~~i~~r~~~ 172 (296)
T PRK15430 149 ------------SL-----PIIALGLAFSFAFYGLVRKKIA 172 (296)
T ss_pred ------------Cc-----cHHHHHHHHHHHHHHHHHHhcC
Confidence 11 1357889999999999988864
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.83 E-value=5.6e-19 Score=149.34 Aligned_cols=169 Identities=11% Similarity=0.032 Sum_probs=134.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 028439 3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGT 82 (209)
Q Consensus 3 ~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~ 82 (209)
..+.+++..++++.++|+.++.++|.+.++ +||..+.++|+.+|+++++++.. ++++ +.++|++......|++..
T Consensus 8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~--~~~~~~~~~~~~~g~~~~ 82 (293)
T PRK10532 8 LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL--RFAKEQRLPLLFYGVSLG 82 (293)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc--cCCHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999875 99999999999999999887642 1221 345678888888888776
Q ss_pred HHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCC
Q 028439 83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPP 162 (209)
Q Consensus 83 ~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~ 162 (209)
..+.++++++++++++.++++.++.|+++.+++ +|+.+ +..++.++++|+.++.. .+.+
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~-------- 141 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD-------- 141 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC--------
Confidence 667889999999999999999999999998876 24321 35667889999988652 1110
Q ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439 163 NSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS 205 (209)
Q Consensus 163 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~ 205 (209)
.. .....|+++.++++++||+|++..||..+++++
T Consensus 142 -------~~-~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~ 176 (293)
T PRK10532 142 -------VS-HVDLTGAALALGAGACWAIYILSGQRAGAEHGP 176 (293)
T ss_pred -------cc-cCChHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 11 112479999999999999999999999877764
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.83 E-value=1.9e-18 Score=146.54 Aligned_cols=156 Identities=10% Similarity=0.043 Sum_probs=127.0
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 028439 23 MFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTA 102 (209)
Q Consensus 23 ~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asi 102 (209)
.+.-|.++++--+|..+++.|+.++++.+.+. +....+++++.+++++++++..|+++..++.+.++|++|++++++++
T Consensus 18 ~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 18 NIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34678888754789999999999998776554 21122223456788999999999999788899999999999999999
Q ss_pred hhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHH
Q 028439 103 LLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLL 182 (209)
Q Consensus 103 i~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 182 (209)
+.++.|+++++++++++|||++++ +++|++++++|+.+.. .+ .. +....|+++.
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~-----------------~~-~~~~~G~~~~ 150 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DT-----------------EL-SFNWAGFLSA 150 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CC-----------------cc-cccHHHHHHH
Confidence 999999999999999999999765 5899999999997643 11 01 1124799999
Q ss_pred HHHHHHHHHHHHHHHHHHh--hcCC
Q 028439 183 AVDCVFTSAWFIVQVRFLR--NSKS 205 (209)
Q Consensus 183 l~aa~~~a~y~vl~k~~~~--~~~~ 205 (209)
++|+++|++|.+..||..+ ++++
T Consensus 151 l~a~~~~a~~~v~~k~~~~~~~~~~ 175 (302)
T TIGR00817 151 MISNITFVSRNIFSKKAMTIKSLDK 175 (302)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCc
Confidence 9999999999999999887 6654
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.77 E-value=6.3e-17 Score=140.13 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 028439 20 VGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRSQIPPL--TLPILSAFFLLGFLG-TSSQFFGYAGIYYS 95 (209)
Q Consensus 20 g~~~i~~k~~~~~~~~-p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~--~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t 95 (209)
....+..|.+++. +| |+++..+|+++++++...+.. ...+++++. .+++++.++.+|+++ .. +...+.|++++
T Consensus 62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~ 138 (350)
T PTZ00343 62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLG 138 (350)
T ss_pred HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 3345568888875 99 999999999999887654422 222222334 245788999999999 65 44467999999
Q ss_pred chhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchH
Q 028439 96 SPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNW 175 (209)
Q Consensus 96 ~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
+++.+.++.++.|++++++++++++||++++ +++|++++++|+.+.+. ++ . +..
T Consensus 139 svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~-----------------~-~~~ 192 (350)
T PTZ00343 139 AVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE-----------------L-HFT 192 (350)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc-----------------c-hhH
Confidence 9999999999999999999999999999765 69999999999988652 10 1 113
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439 176 VFGGLLLAVDCVFTSAWFIVQVRFLRNSK 204 (209)
Q Consensus 176 ~~G~~l~l~aa~~~a~y~vl~k~~~~~~~ 204 (209)
..|+++.++|+++|+.|+++.|+..++++
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~ 221 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKS 221 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 57999999999999999999999987764
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.75 E-value=9.4e-17 Score=134.90 Aligned_cols=168 Identities=12% Similarity=0.075 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 028439 9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFH-RSQIPPLTLPILSAFFLLGFLG-TSSQF 86 (209)
Q Consensus 9 ~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~-r~~~~~~~~~~~~~~~~lg~~g-~~~~~ 86 (209)
....+.++++|+...+..|...++ -++ ..++++..+++++.|+...+. ++.++..+ +++......+.++ ..++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLP-ATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcc-hhhHHHHHHHHHHHHHHHH
Confidence 356678899999999999976554 344 357777888888888765432 22223233 3444556666666 99999
Q ss_pred HHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCc
Q 028439 87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL 166 (209)
Q Consensus 87 ~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~ 166 (209)
+++.|++++++++++.+.++.|+++.+++++++|||++++ +++|+.+++.|++++... +.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~------------- 138 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF------------- 138 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc-------------
Confidence 9999999999999999999999999999999999999865 599999999999887621 10
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439 167 QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS 205 (209)
Q Consensus 167 ~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~ 205 (209)
... ...|+.+.++++++|++|+++.|+..++.++
T Consensus 139 ----~~~-~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~ 172 (281)
T TIGR03340 139 ----AQH-RRKAYAWALAAALGTAIYSLSDKAAALGVPA 172 (281)
T ss_pred ----ccc-chhHHHHHHHHHHHHHHhhhhccccccchhc
Confidence 011 1358888999999999999998886555543
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.69 E-value=2.9e-16 Score=115.10 Aligned_cols=124 Identities=24% Similarity=0.408 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 028439 17 CAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYS 95 (209)
Q Consensus 17 ~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t 95 (209)
++||.+.+..|...++ +||....++|+..+++ ++++....++++....+.+++......|+++ ...+.+++.|++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4799999999998875 9999999999999997 6666555544433456677888899999998 99999999999999
Q ss_pred chhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 96 SPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 96 ~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
+++.++.+.++.|+++.++++++++|+++++ +++|+++.+.|+++++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765 6999999999998764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.69 E-value=6.8e-15 Score=122.35 Aligned_cols=174 Identities=21% Similarity=0.280 Sum_probs=134.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028439 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL 80 (209)
Q Consensus 1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~ 80 (209)
|+++........+...+.|+.+....|...+...++....+.|+..+.+...+.... ++....+ ..+++....+.+.+
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 78 (292)
T COG0697 1 MKRALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALL 78 (292)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHH
Confidence 345566777888888899999999999987644677777777999998884444221 1111111 12224467777777
Q ss_pred H-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHH-HHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccC
Q 028439 81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAI-IFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT 158 (209)
Q Consensus 81 g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~-~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~ 158 (209)
+ ..++.+++.++++++++.++.+.++.|+++.+++. ++++||++++ ++.|+.+++.|++++...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~------ 146 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGG------ 146 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCC------
Confidence 8 99999999999999999999999999999999997 6679999765 58999999999998863211
Q ss_pred CCCCCCCcccCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439 159 SLPPNSSLQVFMPQTN-WVFGGLLLAVDCVFTSAWFIVQVRFL 200 (209)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~y~vl~k~~~ 200 (209)
.+.+ ...|+.+.++++++|++|.+..|+..
T Consensus 147 ------------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~ 177 (292)
T COG0697 147 ------------GGGILSLLGLLLALAAALLWALYTALVKRLS 177 (292)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 46899999999999999999999877
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.63 E-value=2e-14 Score=123.12 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439 17 CAHVGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFLGTSSQFFGYAGIYY 94 (209)
Q Consensus 17 ~~wg~~~i~~k~~~~~~~~-p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~ 94 (209)
++=.++.+.+...-+.+.+ |..-.++-+..-.++..+...++++++ ..+..+++|.+.+++|++-...+++...|++|
T Consensus 23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~y 102 (334)
T PF06027_consen 23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQY 102 (334)
T ss_pred HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555554444554 666667776666666666554433221 12223456777788888778889999999999
Q ss_pred cchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCch
Q 028439 95 SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTN 174 (209)
Q Consensus 95 t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 174 (209)
|+.+.+.++..+.-+++++++++++|||.++. |++|++++++|+.+++..+....+ .+.++++
T Consensus 103 TsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~-----------~~~~~~~ 165 (334)
T PF06027_consen 103 TSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS-----------DSSSGSN 165 (334)
T ss_pred ccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc-----------cCCCCCc
Confidence 99999999999999999999999999998765 699999999999888754321100 1123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439 175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS 205 (209)
Q Consensus 175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~ 205 (209)
..+||++++.+++.||+|.+++++..+++|.
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~~~ 196 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKKAPR 196 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 6899999999999999999999999888763
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.55 E-value=4.4e-14 Score=103.32 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 028439 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIP-PLTLPILSAFFLLGFLGTSSQF 86 (209)
Q Consensus 8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~-~~~~~~~~~~~~lg~~g~~~~~ 86 (209)
.....++++++||...++.|++++ ++||..-++.|-....+++..+.+..++.+.+ ..+.|.|..+.+-|+.+.+.-.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 456778899999999999999986 69999999999999888888776654443321 2467888888888876699999
Q ss_pred HHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 87 ~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
+||.++|.-+++...-+-.+.|+++.++++++++||+|.++ ++|+++..+|++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999998764 899999999997754
No 16
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.47 E-value=2.7e-12 Score=106.04 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=110.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 028439 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSN--LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG- 81 (209)
Q Consensus 5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p--~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g- 81 (209)
..++....++++++|+.+.+..|...+ +.+| ..+..+|+.++.+++.++.+..++ .+..+.+++..+..+|+++
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 202 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGP--NPQALSLQWGALLYLGLIGT 202 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHHH
Confidence 456888999999999999999999875 3664 455557899999999888765332 2233567788889999999
Q ss_pred HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHH
Q 028439 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGA 144 (209)
Q Consensus 82 ~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv 144 (209)
...+.++++++++.+++.++.+.++.|+++.++++++++|+++.+ +++|..+.+.|+
T Consensus 203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999865 589999999886
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.45 E-value=5.3e-12 Score=106.74 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028439 9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG 88 (209)
Q Consensus 9 ~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~ 88 (209)
++..++++++||.+++..|... +.++.++. |..++++++..+.... |+.+ +..++.+..-++.|++-...|.++
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~~~-~~~~~~~~~g~l~G~~w~ig~~~~ 76 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VLPE-FWALSIFLVGLLSGAFWALGQINQ 76 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hCCc-ccccHHHHHHHHHHHHHHhhhhhH
Confidence 5778889999999999999853 68887775 8888888776655443 2211 111233333333333337788999
Q ss_pred HHHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcc
Q 028439 89 YAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ 167 (209)
Q Consensus 89 ~~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~ 167 (209)
+.++++++.+.+-.+.+ +.|++..+.+.+++||+.++++ ....++|+++++.|++++...+++..
T Consensus 77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~~~------------ 142 (290)
T TIGR00776 77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDKSA------------ 142 (290)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEecccccc------------
Confidence 99999999999988888 8889999999999999986542 12228899999999988753221100
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439 168 VFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRF 199 (209)
Q Consensus 168 ~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~ 199 (209)
...+..+...|.++.++|+++|+.|.+..|..
T Consensus 143 ~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~ 174 (290)
T TIGR00776 143 GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF 174 (290)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 00000223579999999999999999999975
No 18
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.41 E-value=1.2e-12 Score=95.69 Aligned_cols=103 Identities=23% Similarity=0.374 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHH
Q 028439 41 FYSKAFASLVLLPASLLFHRSQI--PPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAII 117 (209)
Q Consensus 41 ~~R~~~a~l~l~~~~~~~~r~~~--~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~ 117 (209)
.+|+..+.+++..+...++|.+. +..++|++......|+++ ..++.++++|+++++ +.++.+.++.|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 68999999998887766432211 123345566777888888 799999999999999 48889999999999999999
Q ss_pred HhhccCCcccccchhhHHHHHHHHHHHHHHHHh
Q 028439 118 FRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY 150 (209)
Q Consensus 118 ~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~ 150 (209)
++|||++++ ++.|++++++|++++...
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAWS 107 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence 999999865 599999999999998743
No 19
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.37 E-value=7.2e-11 Score=97.83 Aligned_cols=167 Identities=12% Similarity=0.054 Sum_probs=131.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHH
Q 028439 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI---PPLTLPILSAFFLL 77 (209)
Q Consensus 1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~---~~~~~~~~~~~~~l 77 (209)
|++...|+++..+.+.++||..+...|.. + .+|+.++...|..-+..+++.+....++.+. ...++|.+..+.+.
T Consensus 1 ~~~~~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~ 78 (293)
T COG2962 1 MAKDSRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALT 78 (293)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHH
Confidence 56566789999999999999999999975 4 5999999999999888777665544332221 11234566667777
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCcccc
Q 028439 78 GFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLM 157 (209)
Q Consensus 78 g~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~ 157 (209)
+.+...+-..|.++.+.-.+-++|+=-+..|++..+++.+++|||+++ .|++++.++.+||....+..|
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g----- 147 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG----- 147 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC-----
Confidence 776699999999999999999999999999999999999999999975 469999999999988775433
Q ss_pred CCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439 158 TSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRF 199 (209)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~ 199 (209)
+..| . .+.=+++|+.|-.+-|++
T Consensus 148 --------------~lpw-v----al~la~sf~~Ygl~RK~~ 170 (293)
T COG2962 148 --------------SLPW-V----ALALALSFGLYGLLRKKL 170 (293)
T ss_pred --------------CCcH-H----HHHHHHHHHHHHHHHHhc
Confidence 1223 2 256688999999886654
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.29 E-value=2.2e-10 Score=96.84 Aligned_cols=136 Identities=18% Similarity=0.018 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028439 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSS 84 (209)
Q Consensus 6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~ 84 (209)
..+.+..++++++|+...+..|... . -++....++++.++++++.++....+.......+.++|..+..+|+++ ...
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999853 2 345667788999998888887654322111113457788899999999 999
Q ss_pred HHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 85 QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 85 ~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
+.++++++++.++++++.+.++.|++.+++++++++|+++.. +++|.++.+.|+++...
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999865 59999999999988753
No 21
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.28 E-value=3.4e-10 Score=95.75 Aligned_cols=134 Identities=14% Similarity=0.116 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028439 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSS 84 (209)
Q Consensus 6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~ 84 (209)
..+.+..+.++++|+.+.+..|...+ +.+|...... ..++++++.|+...... ....+...+..++.+|+++ .+.
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999999998754 5888877544 45666777776654321 1123445565677899999 999
Q ss_pred HHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 85 QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 85 ~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
+.++++++++.+|+.++.+.++.|++..++++++++|+++.. +++|..+.+.|++....
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999865 59999999999988754
No 22
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.27 E-value=3.5e-10 Score=92.02 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028439 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF 87 (209)
Q Consensus 8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~ 87 (209)
+++.++.+.+.--...-+.|..+.. +.|.-.+.+|..+++++++++. +.++ ++.+++++..+...|..-...|.+
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--RPwr--~r~~~~~~~~~~~yGvsLg~MNl~ 87 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF--RPWR--RRLSKPQRLALLAYGVSLGGMNLL 87 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--hHHH--hccChhhhHHHHHHHHHHHHHHHH
Confidence 4666666665544455566777774 9999999999999999998773 2222 346778899999999877777888
Q ss_pred HHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcc
Q 028439 88 GYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ 167 (209)
Q Consensus 88 ~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~ 167 (209)
||.+++..+-+.+..+.++-|+.+.+++. +| ..+.+.+.+++.|..++.- .+++
T Consensus 88 FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--------~~d~vwvaLAvlGi~lL~p-~~~~------------- 141 (292)
T COG5006 88 FYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--------LRDFVWVALAVLGIWLLLP-LGQS------------- 141 (292)
T ss_pred HHHHHHhccchhhhhhhhccHHHHHHHhc----cc--------hhhHHHHHHHHHHHHhhee-ccCC-------------
Confidence 89999999999999999999999887641 11 2456778899999988752 2211
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439 168 VFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK 204 (209)
Q Consensus 168 ~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~ 204 (209)
..+. +..|..+.+.+..||+.|++..||.-+.-|
T Consensus 142 --~~~l-Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~ 175 (292)
T COG5006 142 --VWSL-DPVGVALALGAGACWALYIVLGQRAGRAEH 175 (292)
T ss_pred --cCcC-CHHHHHHHHHHhHHHHHHHHHcchhcccCC
Confidence 1122 358999999999999999999998765443
No 23
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.17 E-value=2.4e-09 Score=93.14 Aligned_cols=136 Identities=12% Similarity=0.108 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHHH
Q 028439 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSN-LVFVFYSKAFASLVLLPASLLFHRSQI----PPLTLPILSAFFLLGFLGT 82 (209)
Q Consensus 8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p-~~l~~~R~~~a~l~l~~~~~~~~r~~~----~~~~~~~~~~~~~lg~~g~ 82 (209)
+.+.++.++++|+.+.+..|..... .|| ...+++...++++.+.++....++... ...+.. ...++..|+...
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~ 267 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITS 267 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHH
Confidence 4567888899999999999987664 544 466777777777776666555443211 111222 223444554346
Q ss_pred HHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhc
Q 028439 83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYK 151 (209)
Q Consensus 83 ~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~ 151 (209)
+.+.++++++++.+|+.+++..++.|+++.++++++++|++++. +++|.++.+.|++++...+
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence 67889999999999999999999999999999999999999876 4899999999999887543
No 24
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.15 E-value=2.4e-09 Score=90.66 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028439 7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQF 86 (209)
Q Consensus 7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~ 86 (209)
.+.+..+.++++|+.+.+..|... ++.+|.... +..+++.+.+.... ........+...+..+...|+...+.+.
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~t~~~~~ 230 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLF---FILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAAAMGFGYA 230 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHH---HHHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999964 457887653 23344444443332 2211123455677777777743388999
Q ss_pred HHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 87 ~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
++++++++.+|+.++.+.++.|++..++++++++|+++.. +++|.++.+.|+++...
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 9999999999999999999999999999999999999875 59999999999977653
No 25
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.13 E-value=1.8e-10 Score=98.29 Aligned_cols=108 Identities=22% Similarity=0.296 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccC
Q 028439 79 FLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT 158 (209)
Q Consensus 79 ~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~ 158 (209)
.+-.+.+++++.++.+|+++..+++.++.-+||..++.++..||+|+. |.+++.+++.|+++++..+..+
T Consensus 167 ~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~---- 236 (416)
T KOG2765|consen 167 PLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQ---- 236 (416)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccc----
Confidence 333889999999999999999999999999999999999999999865 7999999999998876432211
Q ss_pred CCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439 159 SLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK 204 (209)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~ 204 (209)
.++..+++...|+++.+++|+.||+|+++-||-..+.+
T Consensus 237 --------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg 274 (416)
T KOG2765|consen 237 --------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEG 274 (416)
T ss_pred --------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 01233455679999999999999999999998877664
No 26
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.11 E-value=1.4e-08 Score=86.25 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=121.9
Q ss_pred HHHHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 028439 22 LMFAGKAAMS-DGMS--NLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPT 98 (209)
Q Consensus 22 ~~i~~k~~~~-~~~~--p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~ 98 (209)
+.+..+.... ..-. |..+++.++....+.-.+.....+++ +.+++.+...+..+++..+...+.+.+++|.|..
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p 91 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP---KSRKIPLKKYAILSFLFFLASVLSNAALKYISYP 91 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc---CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 3445444443 3344 88999999999887766554332211 2233445567778877788889999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHH
Q 028439 99 LSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFG 178 (209)
Q Consensus 99 ~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G 178 (209)
.-.++-...|+.+++++.+++++|.+++ |++++++..+|+++....+...... ......++..|
T Consensus 92 ~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~----------~~~~~~~~~~G 155 (303)
T PF08449_consen 92 TQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS----------SNSSSFSSALG 155 (303)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc----------cccccccchhH
Confidence 9999999999999999999999998755 6999999999998876443221100 01111223459
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 028439 179 GLLLAVDCVFTSAWFIVQVRFLRNSKSE 206 (209)
Q Consensus 179 ~~l~l~aa~~~a~y~vl~k~~~~~~~~~ 206 (209)
+++++++.++-+.+.+.++|..++|+.+
T Consensus 156 ~~ll~~sl~~~a~~~~~qe~~~~~~~~~ 183 (303)
T PF08449_consen 156 IILLLLSLLLDAFTGVYQEKLFKKYGKS 183 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999988754
No 27
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.07 E-value=1.2e-08 Score=86.57 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHH
Q 028439 7 APVIGMMMAECAHVGLMFAGKAAMSDG--MSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IPPLTLPILSAFFLLGF 79 (209)
Q Consensus 7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~--~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-----~~~~~~~~~~~~~~lg~ 79 (209)
.+.+..+.+.++|+.+.+..|...+.. .+......+-..++.+.+....+..+... ....+...+..++.+|+
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 577888999999999999999864431 12233334444444443333333222211 11345677889999999
Q ss_pred HH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 80 LG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 80 ~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
++ ...+.+++.++++.++++++.+..+.|++..++++++++|+++.. +++|.++.++|+.+..
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 99 999999999999999999999999999999999999999999865 5999999999998765
No 28
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.04 E-value=2.7e-11 Score=99.14 Aligned_cols=176 Identities=15% Similarity=0.230 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 028439 17 CAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSS 96 (209)
Q Consensus 17 ~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~ 96 (209)
..+....++.+..+ +.+|.+....|++.-.++..|..+.....-+-+...| +++++-|+.|+...++.|++++|.+
T Consensus 47 ~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~tgvmlmyya~~~ms 122 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFTGVMLMYYALMYMS 122 (346)
T ss_pred HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhhHHHHHHHHHhhcc
Confidence 66666666666654 3899999999977666665554333211111111122 2467778888445556678999999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHH
Q 028439 97 PTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWV 176 (209)
Q Consensus 97 a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
-+.|++|....|++|.+++++++||+.++ .+.+|..+.+.|+++++. |.....++. +.++.+ ..+...
T Consensus 123 laDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIvR---PpFlFG~~t-~g~~~s--~~~~~~ 190 (346)
T KOG4510|consen 123 LADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIVR---PPFLFGDTT-EGEDSS--QVEYDI 190 (346)
T ss_pred hhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEec---CCcccCCCc-cccccc--cccccC
Confidence 99999999999999999999999999875 468999999999998872 322221110 001101 112335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 028439 177 FGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQ 208 (209)
Q Consensus 177 ~G~~l~l~aa~~~a~y~vl~k~~~~~~~~~~~ 208 (209)
.|.+..+.+++.-|.-.++-|++=++.+..+|
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~ms 222 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMS 222 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccccEEEE
Confidence 67888888888887777777777666655443
No 29
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.03 E-value=3.2e-09 Score=90.00 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCHHH-HHHH
Q 028439 6 LAPVIGMMMAECAHVGLMFAGKAAMSD-GMSNLVFVFYSKAFASLVLLPASLLFHRSQIPP---------LTLPI-LSAF 74 (209)
Q Consensus 6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~-~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~---------~~~~~-~~~~ 74 (209)
..+.+..++++++|+...+..|...++ ++||..+..+....+++.++|+....+...... ..... +...
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 447788899999999999999987641 599999999999999999999876543111000 00001 1112
Q ss_pred HHHHHHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 75 FLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 75 ~~lg~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
...+... ..++.+++.++++++|+.+++..++.|++++++++++++|+++.. +++|..+.+.|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence 2333323 445577888999999999999999999999999999999999876 49999999999988764
No 30
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.97 E-value=5.1e-09 Score=87.96 Aligned_cols=133 Identities=16% Similarity=0.056 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 028439 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLV----FVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG 81 (209)
Q Consensus 6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~----l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g 81 (209)
.++....+.++++|+.+.+..|...+ +.+|.. ...+.+.+.++.+.++....++ .....+...+..+...+.+.
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG-RSMFPYARQILPSATLGGLM 220 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHHHH
Confidence 34566778889999999999987532 355432 2233333332222222211111 11111223344556777777
Q ss_pred -HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439 82 -TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (209)
Q Consensus 82 -~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l 146 (209)
.+.+.++++++++.+++.++.+.++.|++..++++++++|+++.. +++|..+.+.|+.+
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 889999999999999999999999999999999999999999865 59999999999875
No 31
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.88 E-value=1.3e-07 Score=71.86 Aligned_cols=132 Identities=17% Similarity=0.274 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CC-------CHHHH
Q 028439 9 VIGMMMAECAHVGLMFAGKAAMSD------GMSNLVFVFYSKAFASLVLLPASLLFHRSQIP----PL-------TLPIL 71 (209)
Q Consensus 9 ~l~ll~~~~~wg~~~i~~k~~~~~------~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~----~~-------~~~~~ 71 (209)
++..+.+.++-+...+..|..++. ..+|.++..+--..+.++++|..+..++.+.. .. +.+.+
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence 466788899999999999998865 68999999999999999999988776543310 00 12334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439 72 SAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (209)
Q Consensus 72 ~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l 146 (209)
..+...|+++...+...+.-+++++|...++..+.-.+++.++++++++|+++.+ ++.|+++++.|+++
T Consensus 82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 4555566666899999999999999999999999999999999999999999865 59999999999864
No 32
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.85 E-value=2.2e-07 Score=80.62 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------CCCCH
Q 028439 6 LAPVIGMMMAECAHVGLMFAGKAAMSD------GMSNLVFVFYSKAFASLVLLPASLLFHRSQI-----------PPLTL 68 (209)
Q Consensus 6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~------~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~-----------~~~~~ 68 (209)
..+.+..++++++|+...+..|..+++ .+++..+..+-..+++++++|+....+.... .....
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 347788999999999999999998753 2667777777788999999998764432110 00011
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439 69 PILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (209)
Q Consensus 69 ~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~ 147 (209)
.......+.+.+. .+++...+++++.++|..+++..++-|+++.++++++++|+++.. +++|.++++.|+++-
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHH
Confidence 1111222333333 555666668999999999999999999999999999999999876 599999999999775
Q ss_pred H
Q 028439 148 T 148 (209)
Q Consensus 148 ~ 148 (209)
.
T Consensus 347 s 347 (350)
T PTZ00343 347 S 347 (350)
T ss_pred h
Confidence 4
No 33
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.74 E-value=9.2e-07 Score=73.34 Aligned_cols=132 Identities=16% Similarity=0.195 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028439 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVF-YSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS 83 (209)
Q Consensus 6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~-~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~ 83 (209)
..+.+..+.+.+.|+.+.+..|... ..++..... +.+..+.....+. ...... ...+.+++..+...|+++ ..
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLF--FLSGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHH--Hhcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999765 477777776 4444222332222 111111 234567888899999999 78
Q ss_pred HHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 84 ~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
.+.+++.+++..+++.++.+..+.|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999865 5899999999998765
No 34
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.72 E-value=3.5e-07 Score=77.37 Aligned_cols=133 Identities=19% Similarity=0.154 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 028439 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKA---FASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGT 82 (209)
Q Consensus 6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~---~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~ 82 (209)
.|+....+++.+.|+.+.+..|.. +.||.+..+.... +++.++.+.. ++.++. ..+......+.|++-.
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~Gi~~~ 222 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----ILAKPL-KKYAILLNILPGLMWG 222 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hcccch-HHHHHHHHHHHHHHHH
Confidence 678999999999999999999964 3899988555544 4444443331 111222 2333334455777667
Q ss_pred HHHHHHHHHhh-ccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 83 SSQFFGYAGIY-YSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 83 ~~~~~~~~gl~-~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
..+.+|+.|.+ +.+++.++++.+..|+...+.+++++||+.++++. +.-++|.++.+.|+.+..
T Consensus 223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence 77888999999 99999999999999999999999999999988761 122289999999987764
No 35
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.71 E-value=7e-07 Score=75.64 Aligned_cols=131 Identities=14% Similarity=0.069 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q 028439 10 IGMMMAECAHVGLMFAGKAAMSDG-MSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFLGTSSQFF 87 (209)
Q Consensus 10 l~ll~~~~~wg~~~i~~k~~~~~~-~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~lg~~g~~~~~~ 87 (209)
+..+.++++|+.+.+..|...+++ .++.....+-..++...+.++. ..... ....+...+..+...|+.....+.+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~ 229 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSSTSHMGQNPMSLNLLLIAAGIVTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCcccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 346677899999999998853221 2223333333333333322221 10000 0111122233444455544788999
Q ss_pred HHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 88 GYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 88 ~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
+++++++.+|+.++.+.++.|++..++++++++|+++.. +++|..+.++|+.++.
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875 5899999988887765
No 36
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.70 E-value=5e-07 Score=74.69 Aligned_cols=130 Identities=12% Similarity=0.122 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439 67 TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (209)
Q Consensus 67 ~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l 146 (209)
++|+..++.+=+++..+.+.+.+.++++.+|+.-.++..+-.++|++++++++|+|++.+ ||.++.+-+.|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 356777778888877888999999999999999999999999999999999999999876 48999999999988
Q ss_pred HHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439 147 MTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS 205 (209)
Q Consensus 147 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~ 205 (209)
+...+....+..+. .+.+ .+....+...|.++.+.++++-++-.+..+|++|+.+.
T Consensus 87 v~~~~~~~~~~~~~-~~~~--~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~ 142 (244)
T PF04142_consen 87 VQLSSSQSSDNSSS-SSVH--HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV 142 (244)
T ss_pred eecCCccccccccc-cccc--cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 65322111000000 0000 01123446799999999999999999999999988763
No 37
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.62 E-value=7.2e-07 Score=64.95 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=60.8
Q ss_pred HHHHHHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 75 FLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 75 ~~lg~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
...++.+ .+.++++..+++..|.+.|..+.++.|+++.++++++++||++++ |++|+.+.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3444577 889999999999999999999999999999999999999999876 5999999999998764
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.40 E-value=1e-05 Score=66.27 Aligned_cols=132 Identities=15% Similarity=0.098 Sum_probs=105.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028439 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS 83 (209)
Q Consensus 5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~ 83 (209)
+.-+..+.+.+..+|..+.+.+|.+-+ ..+--.=...-+.+|+++.+|+........ -.+.+....-+..|+++ .+
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhccc
Confidence 344567788899999999999998753 355566677889999999999976432111 23445555667788899 99
Q ss_pred HHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHH
Q 028439 84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF 145 (209)
Q Consensus 84 ~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~ 145 (209)
.+.+...+++..++..-+++.++.|.+..+.++++++|++|..| |+|+...+++..
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsa 278 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASA 278 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998765 777777666553
No 39
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.39 E-value=0.00013 Score=62.51 Aligned_cols=183 Identities=11% Similarity=0.086 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhcC---CC-CCC------CHHHHHH
Q 028439 7 APVIGMMMAECAHVGLMFAGKAAMSDG---MSNLVFVFYSKAFASLVLLPASLLFHRS---QI-PPL------TLPILSA 73 (209)
Q Consensus 7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~---~~p~~l~~~R~~~a~l~l~~~~~~~~r~---~~-~~~------~~~~~~~ 73 (209)
..++.++...+-+++.....|..-..+ ..|.+..+.--.+-.++.....+...|+ +. +.+ .+++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 456777888899999999999986655 6777777777776666555554443221 11 111 2345555
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCC
Q 028439 74 FFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGP 153 (209)
Q Consensus 74 ~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~ 153 (209)
+.+=+++.++.+-+++.++.+.+|+.-.+...+--+-|+++..+++++|++++| |..+.+.++|+.++.....+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCCC
Confidence 666666667777799999999999999999999999999999999999998765 89999999999887622111
Q ss_pred ccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439 154 HLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK 204 (209)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~ 204 (209)
.. +. .+.....+...|....+.+|++-++-.+.-.|++|+-+
T Consensus 169 ~~---~a------~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~ 210 (345)
T KOG2234|consen 169 PT---GA------KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN 210 (345)
T ss_pred CC---Cc------cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 10 00 01223455679999999999999999999999887644
No 40
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.39 E-value=1.3e-05 Score=59.92 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 028439 7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQ 85 (209)
Q Consensus 7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~ 85 (209)
++|+.++.+.++=+..-++.|.+.++ .+..+.... . ...+. ... .| ...+.+|+.. .+.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~-------~~~--~p-------~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL-------AFG--LA-------LRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH-------HHh--cc-------HHHHHHHHHHHHHHH
Confidence 36777777777778888888988764 443332221 1 10000 000 00 1257888888 9999
Q ss_pred HHHHHHhhccchhHHHHhhcchHHHHHHHHHH--HhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 86 FFGYAGIYYSSPTLSTALLNLVPGFTFILAII--FRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 86 ~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~--~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
.++..+++..+++.|.-+.+..|+++.+.++. +++|+++++ |++|+.+.++|+.++.
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999999999999989888885 799999876 5999999999999875
No 41
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.15 E-value=1e-05 Score=69.06 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=115.0
Q ss_pred HHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 028439 25 AGKAAMS--DGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTA 102 (209)
Q Consensus 25 ~~k~~~~--~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asi 102 (209)
.-|..++ +.--|.++...++.++.+.+...-....++..+..++..+..++-+|++..+...+-+.++++.+.+..-.
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~ 114 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT 114 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence 4677776 44578999999888888777655433222221111334577788888888888888899999999999999
Q ss_pred hhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHH
Q 028439 103 LLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLL 182 (209)
Q Consensus 103 i~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 182 (209)
+=+++|.++.++++++.+|+.+++. +..++....|+.+.... +.+-+..|.+..
T Consensus 115 iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~--------------------e~~fn~~G~i~a 168 (316)
T KOG1441|consen 115 IKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVT--------------------ELSFNLFGFISA 168 (316)
T ss_pred HHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeec--------------------cccccHHHHHHH
Confidence 9999999999999999999998765 45666677777664321 112236899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028439 183 AVDCVFTSAWFIVQVRFLR 201 (209)
Q Consensus 183 l~aa~~~a~y~vl~k~~~~ 201 (209)
+.+.++.+...+++|++++
T Consensus 169 ~~s~~~~al~~I~~~~ll~ 187 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLT 187 (316)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999885
No 42
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.00 E-value=1.1e-05 Score=64.01 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 028439 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLP 161 (209)
Q Consensus 82 ~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~ 161 (209)
++.++.|..+++..+|+.++.+....-.|+.+++++.+++|+.. .|++..++++.|++.+...+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~D---------- 127 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYAD---------- 127 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEecc----------
Confidence 67789999999999999999999999999999999999999875 46999999999998775321
Q ss_pred CCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028439 162 PNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLR 201 (209)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~ 201 (209)
....+.+.|..+.++++..-|+|-++-|+...
T Consensus 128 --------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iG 159 (290)
T KOG4314|consen 128 --------NEHADEIIGIACAVGSAFMAALYKVLFKMFIG 159 (290)
T ss_pred --------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23355679999999999999999999888764
No 43
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.88 E-value=0.00033 Score=60.48 Aligned_cols=141 Identities=11% Similarity=0.040 Sum_probs=100.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHH
Q 028439 3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLT--LPILSAFFLLGFL 80 (209)
Q Consensus 3 ~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~--~~~~~~~~~lg~~ 80 (209)
.+..++.+.++.++.++|.+.+.-+...+ +.|+..+...=-+.+.++..+.....+|+.....+ .+....++..++.
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 35577889999999999999999998776 47887766555556666666665556665543332 3333322323332
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHh
Q 028439 81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY 150 (209)
Q Consensus 81 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~ 150 (209)
....+.+.-..+++++|+...+=.-+...+.+++..+++||++++. .++|.++.++|.++....
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA 306 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence 2555666778899999986666556778889999999999998764 589999999999876543
No 44
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.72 E-value=0.0016 Score=55.38 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-C-----CCCHHHHHHHHHHHHH
Q 028439 8 PVIGMMMAECAHVGLMFAGKAAMS-DGMSNLVFVFYSKAFASLVLLPASLLFHRSQI-P-----PLTLPILSAFFLLGFL 80 (209)
Q Consensus 8 ~~l~ll~~~~~wg~~~i~~k~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~-~-----~~~~~~~~~~~~lg~~ 80 (209)
++..++++.++-|...+..+..++ .+.+|.+..++-...+.+...+........+. . ...++.+..+++.++.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 788899999999999999998874 57899999999999988887766554111110 0 0112345566677777
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 81 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
+...+.+.+.-.+..+|...+++.++--+++++++..+++|++++.+ |.|+++.+.|..+=.
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~------~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQ------WIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHH------HHHHHHhHHHHHHHH
Confidence 76666777778999999999999999999999999999999998764 899999999997754
No 45
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.72 E-value=0.0026 Score=55.12 Aligned_cols=181 Identities=12% Similarity=0.061 Sum_probs=112.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHHHHHHHHHHhhcC---CCCCCCHHHHHHHH
Q 028439 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVF--VFYSKAFASLVLLPASLLFHRS---QIPPLTLPILSAFF 75 (209)
Q Consensus 1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l--~~~R~~~a~l~l~~~~~~~~r~---~~~~~~~~~~~~~~ 75 (209)
|+++..-+++..+++.++||++++-.|..-+....-++. ..+.+++....+. .+..+. .....+.+.+..-+
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v~gi~~wl~~~~~~g---~~~~~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSVGGIFSWLILPWLIA---ALLLPDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHhcCHHHHHHHH
Confidence 667778899999999999999999999832211112211 1111111111111 111110 01123455565555
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhh-cchHHHHHHHHHHHhhccC---CcccccchhhHHHHHHHHHHHHHHHHhc
Q 028439 76 LLGFLGTSSQFFGYAGIYYSSPTLSTALL-NLVPGFTFILAIIFRVEKL---DWRSSSSLAKSVGTIVLITGAFIMTYYK 151 (209)
Q Consensus 76 ~lg~~g~~~~~~~~~gl~~t~a~~asii~-~~~Pv~~~lla~~~~~E~~---~~~~~~~~~~~~G~~l~~~Gv~l~~~~~ 151 (209)
+-|++-...|..++.++++...+.+--+. .+.=++..++..++++|-- +.++ ...-.+|+++.++|+.+.....
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhh
Confidence 56665588899999999999999876554 4777888888888888643 3332 3446779999999998876521
Q ss_pred CCccccCCCCCCCCcccC-CCCchHHHHHHHHHHHHHHHHHHHH
Q 028439 152 GPHLLMTSLPPNSSLQVF-MPQTNWVFGGLLLAVDCVFTSAWFI 194 (209)
Q Consensus 152 g~~~~~~~~~~~~~~~~~-~~~~~~~~G~~l~l~aa~~~a~y~v 194 (209)
..... ++... ..+.+...|.++.+.+.+.+++|..
T Consensus 156 ~~k~~--------~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 156 QLKER--------KMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred hhccc--------ccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 10000 00000 1234567999999999999999993
No 46
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.70 E-value=0.0014 Score=54.15 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH---HhhcCCC-CC-CCHHHHHHHHHHHHHHHHHH
Q 028439 11 GMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASL---LFHRSQI-PP-LTLPILSAFFLLGFLGTSSQ 85 (209)
Q Consensus 11 ~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~---~~~r~~~-~~-~~~~~~~~~~~lg~~g~~~~ 85 (209)
..+.++++|+.+.+..|...+ -++...... .+.+.|+.. ....... .. ...++|..+..+|+++...+
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~ 222 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLE-----TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPL 222 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--CCcchHHHH-----HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHH
Confidence 456789999999999998533 233222221 222222221 1111111 11 12357888888887767899
Q ss_pred HHHHHHhhccchhHHHHhhcchHHHHHHHHHHH
Q 028439 86 FFGYAGIYYSSPTLSTALLNLVPGFTFILAIIF 118 (209)
Q Consensus 86 ~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~ 118 (209)
.++++|+++.+|+.++.+.++.|++..+++.++
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998764
No 47
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.67 E-value=0.0018 Score=54.21 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-----------C--CHHHHHHHHHHHH
Q 028439 20 VGLMFAGKAAMS---DGMS----NLVFVFYSKAFASLVLLPASLLFHRSQIPP-----------L--TLPILSAFFLLGF 79 (209)
Q Consensus 20 g~~~i~~k~~~~---~~~~----p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~-----------~--~~~~~~~~~~lg~ 79 (209)
+.|.+.+|.+-+ +|-| |+.-+..-|+.=++++..+.+.+.|...+. . +.+. .+++.=.
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p--~lfl~Pa 93 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP--VLFLPPA 93 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc--ceecChH
Confidence 457778887643 2333 555555555555677776655544322110 0 1111 1122223
Q ss_pred HH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccC
Q 028439 80 LG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT 158 (209)
Q Consensus 80 ~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~ 158 (209)
+. .....+.|.|+.+|+|+.--.+-...-+||.+++.-+++.+++.+ ||+|+....+|++.+...+-. .
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~----~ 163 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVH----L 163 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeecc----c
Confidence 33 555666789999999999888888888999999999999998765 589999999999876422100 0
Q ss_pred CCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439 159 SLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK 204 (209)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~ 204 (209)
++ .+ -..-++...||++++.+-+.-|...+.-+|.+++++
T Consensus 164 ~~--~p----~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n 203 (372)
T KOG3912|consen 164 VT--DP----YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN 203 (372)
T ss_pred cc--CC----ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 00 00 011234578999999999999999999888777654
No 48
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.65 E-value=0.00085 Score=56.05 Aligned_cols=132 Identities=15% Similarity=0.097 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 028439 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSS 84 (209)
Q Consensus 5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~ 84 (209)
..|+.+.++++.+.|..+.++.|.. ++||.+..+-+ .++-++-..+.....++ +..+++.+ +-.+-|++-...
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~~~~--~~~~k~~~-~nil~G~~w~ig 208 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLFSKK--PFFEKKSW-KNILTGLIWGIG 208 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhcccc--cccccchH-HhhHHHHHHHHH
Confidence 4678899999999999999998863 48888776644 33332222211111111 12223333 346666666777
Q ss_pred HHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHH
Q 028439 85 QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF 145 (209)
Q Consensus 85 ~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~ 145 (209)
+.+++.+.+....+.+-.+..+.+++..+.+.+++||+=++|++ ..-++|+++.+.|.+
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence 88899999999999999999999999999999999998666652 334556666666654
No 49
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.65 E-value=0.0024 Score=53.38 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439 69 PILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (209)
Q Consensus 69 ~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~ 147 (209)
+.+..-++.|++-...|..++.+.++...+.+-=+.+ +.=+.+.+.++++++|.-+.+++ ..-..++++.++|+.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHh
Confidence 6666666666666999999999999999988866664 55566888899999998765542 12244677888888876
Q ss_pred HHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439 148 TYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVR 198 (209)
Q Consensus 148 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~ 198 (209)
+..++++. ...+..+...|...++++.+.|..|.++.|-
T Consensus 121 s~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 121 SYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred cccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 64332210 0112344568999999999999999999665
No 50
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.62 E-value=1e-06 Score=72.24 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439 16 ECAHVGLMFAGKAAMSDGM-SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYY 94 (209)
Q Consensus 16 ~~~wg~~~i~~k~~~~~~~-~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~ 94 (209)
-++=+.++..+..+- .++ .|..-.++-+..=+++..|+..++ |+ .+ .-.|.+.+++++.-.-.+++...+.||
T Consensus 28 L~~t~~a~tss~la~-k~iN~Pt~QtFl~Y~LLalVY~~~~~fR-~~---~~-~~~~~hYilla~~DVEaNy~vV~AyQy 101 (336)
T KOG2766|consen 28 LLITSTAFTSSELAR-KGINAPTSQTFLNYVLLALVYGPIMLFR-RK---YI-KAKWRHYILLAFVDVEANYFVVKAYQY 101 (336)
T ss_pred HHHHcchhhhHHHHh-ccCCCccHHHHHHHHHHHHHHhhHHHhh-hH---HH-HHHHHHhhheeEEeecccEEEeeehhh
Confidence 334444444444432 233 466677888888888888887653 21 12 223556788888766666777889999
Q ss_pred cchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCch
Q 028439 95 SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTN 174 (209)
Q Consensus 95 t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 174 (209)
|+-+...++-.-.-..+++++++++|.|-. ..|+.|+++|+.|+..++.++-.+ ....++.+
T Consensus 102 TsmtSi~lLDcwaip~v~~lsw~fLktrYr------lmki~gV~iCi~GvvmvV~sDV~a------------gd~aggsn 163 (336)
T KOG2766|consen 102 TSMTSIMLLDCWAIPCVLVLSWFFLKTRYR------LMKISGVVICIVGVVMVVFSDVHA------------GDRAGGSN 163 (336)
T ss_pred cchHHHHHHHHhhhHHHHHHHHHHHHHHHh------hheeeeEEeEecceEEEEEeeecc------------ccccCCCC
Confidence 999999988876556677889999988754 457999999999998887432110 01234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439 175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNSK 204 (209)
Q Consensus 175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~ 204 (209)
..+||++++.++-+||+-++....+.++.|
T Consensus 164 p~~GD~lvi~GATlYaVSNv~EEflvkn~d 193 (336)
T KOG2766|consen 164 PVKGDFLVIAGATLYAVSNVSEEFLVKNAD 193 (336)
T ss_pred CccCcEEEEecceeeeeccccHHHHHhcCc
Confidence 679999999999999999988777666654
No 51
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.014 Score=49.65 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 028439 20 VGLMFAGKAAMSDGMSNLVFV--FYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSP 97 (209)
Q Consensus 20 g~~~i~~k~~~~~~~~p~~l~--~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a 97 (209)
....++-|.++...=-|..+. .++.+...+++...-..+ --+.+++++++.+..+-..++-.+..+.-..+++|.+.
T Consensus 25 ~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~-lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnV 103 (314)
T KOG1444|consen 25 ILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLG-LVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNV 103 (314)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhc-eeecCCcChHHHHHHccHHHHHHHHHHHccccccccCc
Confidence 334455677775422233333 478877766665442211 11235677777777777887777777777889999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHH
Q 028439 98 TLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVF 177 (209)
Q Consensus 98 ~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (209)
..-+++=+..|+++++....+++.+.+ +.-+..+....+|....... +... ...
T Consensus 104 pm~tv~kn~tii~~ai~E~lf~~~~~~------~~v~~Sv~~m~~~s~~~~~~-------------------d~sf-~~~ 157 (314)
T KOG1444|consen 104 PMFTVFKNLTIILTAIGEVLFFGKRPS------NKVWASVFAMIIGSVAAAFT-------------------DLSF-NLR 157 (314)
T ss_pred hHHHHHhhchHHHHHHhHHhhcCcCch------hhHHHHHHHHHHHHHhhccc-------------------ccee-cch
Confidence 999999999999999999999886654 34567777777777554321 0111 135
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028439 178 GGLLLAVDCVFTSAWFIVQVRFLR 201 (209)
Q Consensus 178 G~~l~l~aa~~~a~y~vl~k~~~~ 201 (209)
|..|++.++++-+.|.+..|+..+
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd 181 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVD 181 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999888654
No 52
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.41 E-value=0.00054 Score=57.73 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=82.7
Q ss_pred CCCHHH-HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHH
Q 028439 65 PLTLPI-LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITG 143 (209)
Q Consensus 65 ~~~~~~-~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~G 143 (209)
..++++ ++++.-.|+.+++...+-+++++|++-+.=+..=+..++|+.+++.++.-||.++. -..-+++..+|
T Consensus 77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~G 150 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVG 150 (349)
T ss_pred CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhh
Confidence 345665 34556677766889999999999999998888888999999999999999998753 23344455556
Q ss_pred HHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439 144 AFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK 204 (209)
Q Consensus 144 v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~ 204 (209)
+++++. +..+ -...|-++++.|+++-++=-.+.+.++++.|
T Consensus 151 lflft~-KsTq-------------------f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~ 191 (349)
T KOG1443|consen 151 LFLFTY-KSTQ-------------------FNIEGFFLVLAASLLSGLRWAFTQMLLRNQP 191 (349)
T ss_pred eeEEEe-cccc-------------------eeehhHHHHHHHHHhhhhhHHHHHHHHhcCc
Confidence 666542 3211 1247888888888887777677777777665
No 53
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.22 E-value=0.011 Score=42.77 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=53.7
Q ss_pred HHH-HHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439 79 FLG-TSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (209)
Q Consensus 79 ~~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~ 147 (209)
+.+ ...+++...++|+.|.+.| ++....--+.+.+.++++++|++++. |++|+.+.+.|++.+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 444 7788889999999999988 56666888899999999999999875 599999999999875
No 54
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.18 E-value=0.0024 Score=47.05 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=56.7
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHHH-HhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 76 LLGFLG-TSSQFFGYAGIYYSSPTLST-ALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 76 ~lg~~g-~~~~~~~~~gl~~t~a~~as-ii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
+..+.+ ...++++..++++.|.+.|= +...+.-+.+.+.+.++++|++++. |++|+.+.++|++.+-.
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 345555 88889999999999999884 4456788899999999999999875 69999999999988753
No 55
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.17 E-value=0.0053 Score=52.33 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028439 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL 80 (209)
Q Consensus 1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~ 80 (209)
||....-+....+.+.++-+......|.+... .+. .-.| .+ +.++.-.++ ...+.|+.
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~---------------~~-~~~~~~l~~--~~W~~G~~ 58 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR---------------AG-SGGRSYLRR--PLWWIGLL 58 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc---------------cc-chhhHHHhh--HHHHHHHH
Confidence 56666667777777888888888888876532 110 0000 00 000000111 23455655
Q ss_pred H-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 81 g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
. .+.+.+.+.++.+.|++..+-+..+.=++..+++..+++||++++ .+.|+.+++.|..+++.
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI 122 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence 5 667778889999999999998889999999999999999999865 58999999999987764
No 56
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.16 E-value=0.0019 Score=55.25 Aligned_cols=137 Identities=13% Similarity=0.215 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC----C-CCCHHHHHHHH
Q 028439 5 GLAPVIGMMMAECAHVGLMFAGKAAMS---DGMSNLVFVFYSKAFASLVLL-PASLLFHRSQI----P-PLTLPILSAFF 75 (209)
Q Consensus 5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~---~~~~p~~l~~~R~~~a~l~l~-~~~~~~~r~~~----~-~~~~~~~~~~~ 75 (209)
+..+.+....+.+..+.--++.|..+. +.++++.+..+---++...++ |+....+.... . ..+.. .....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence 467788888899999999999999883 358999999888888888888 88665444322 0 11222 34445
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 76 LLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 76 ~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
+.+++..+.|...|+-+..++|-+=++....==.++...++++++|++|+. +.+|..+++.|+.+=.
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 555555888889999999999998887776655666677888899998875 4999999999998744
No 57
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0035 Score=45.01 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=56.8
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 76 LLGFLG-TSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 76 ~lg~~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
++.+.+ ...+.+...++|+.|.+.| ++....--+.+.+.++++++|+++.. |++|+.+.++|++.+-
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 344445 7888899999999999988 66677888999999999999999865 6999999999998764
No 58
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.08 E-value=0.0043 Score=44.99 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=54.8
Q ss_pred HHHHH-HHHHHHHHHHhhccchhHHH-HhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 77 LGFLG-TSSQFFGYAGIYYSSPTLST-ALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 77 lg~~g-~~~~~~~~~gl~~t~a~~as-ii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
..+.+ .+.+.+...+++..|.+.|= +...+.-+.+.+.++++++|++++. |++|+.+.++|++.+-
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 34555 77888888999999999884 4456777888999999999999875 5999999999998875
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.95 E-value=0.0071 Score=43.48 Aligned_cols=64 Identities=8% Similarity=-0.051 Sum_probs=54.8
Q ss_pred HHH-HHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 79 FLG-TSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 79 ~~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
+.+ ...+++...++|..|.+.| ++...+--+.+.+.++++++|++++. |++|+.+.+.|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 455 7888889999999999988 56666888899999999999999875 5999999999998764
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.89 E-value=0.095 Score=44.11 Aligned_cols=126 Identities=13% Similarity=0.037 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439 14 MAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI--PPLTLPILSAFFLLGFLGTSSQFFGYAG 91 (209)
Q Consensus 14 ~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~--~~~~~~~~~~~~~lg~~g~~~~~~~~~g 91 (209)
..++.||.++..=|.. ++|+.+=.+.-...-..+-+.+.++..-... ..-+.+++..+...|...+..-.+|..|
T Consensus 155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~a 231 (293)
T COG2962 155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAA 231 (293)
T ss_pred HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 3467888888887753 3777665555544433333333223222110 0023456777888888889999999999
Q ss_pred hhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 92 IYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 92 l~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
-+..+-+.-+++++..|.+..+++.++++|+++.- |..+-++.-.|.++..
T Consensus 232 a~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 232 AKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999764 5777777777776654
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.86 E-value=0.092 Score=45.59 Aligned_cols=144 Identities=16% Similarity=0.039 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHHH-HHHHh-hcCCC-C-----CC
Q 028439 5 GLAPVIGMMMAECAHVGLM-------FAGKAAMSDGMSNLVFVFYSKA---FASLVLLP-ASLLF-HRSQI-P-----PL 66 (209)
Q Consensus 5 ~~~~~l~ll~~~~~wg~~~-------i~~k~~~~~~~~p~~l~~~R~~---~a~l~l~~-~~~~~-~r~~~-~-----~~ 66 (209)
..|+.+.++++.+..+... +.-+.+...+.+|.....-.+. +++++.-. ++.++ +|++. + +.
T Consensus 172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~ 251 (345)
T PRK13499 172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL 251 (345)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence 3678888888888888777 5555544457888877777766 55554432 22221 12111 0 11
Q ss_pred CHHHHHHH----HHHHHHHHHHHHHHHHHhhccchhHHHH---hh-cchHHHHHHHHHHHhhccCCcccccchhhHHHHH
Q 028439 67 TLPILSAF----FLLGFLGTSSQFFGYAGIYYSSPTLSTA---LL-NLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTI 138 (209)
Q Consensus 67 ~~~~~~~~----~~lg~~g~~~~~~~~~gl~~t~a~~asi---i~-~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~ 138 (209)
+++.+.+= .+.|++-...+.++..|-+..+.+.+.+ +. .+.-++..+-+. ++||+=+-.++..+.-++|++
T Consensus 252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~v 330 (345)
T PRK13499 252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCV 330 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHH
Confidence 22222232 3333333666778888888775555544 44 444455454454 699986643444567788999
Q ss_pred HHHHHHHHHHH
Q 028439 139 VLITGAFIMTY 149 (209)
Q Consensus 139 l~~~Gv~l~~~ 149 (209)
+.+.|+.++..
T Consensus 331 liI~g~~lig~ 341 (345)
T PRK13499 331 VIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHhh
Confidence 99999988763
No 62
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.85 E-value=0.05 Score=41.01 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcc-hHHHHHH
Q 028439 35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNL-VPGFTFI 113 (209)
Q Consensus 35 ~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~-~Pv~~~l 113 (209)
+|+.-++.-+..+.+++..+.+..+++..+..+.-+| +..+-|++|..+-.+..+.....+++.+..+.-+ .=+...+
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5999999999999998887766654432222211122 3344677778888888999999999988777654 3333444
Q ss_pred HHHH--HhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439 114 LAII--FRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (209)
Q Consensus 114 la~~--~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l 146 (209)
+.++ +..|| ++.+..|++|+.+.++|+.+
T Consensus 108 iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 108 IDHFGLFGAPK----RPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence 4443 22222 22345689999999999853
No 63
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.0098 Score=48.70 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHH
Q 028439 37 LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAI 116 (209)
Q Consensus 37 ~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~ 116 (209)
+.+.++++.+-.++-=.+..+ |++. +.+...-+....+++-..+.+...+.++||.+=-...+=-+.-|+=++++++
T Consensus 54 laLVf~qC~~N~vfAkvl~~i--r~~~-~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGV 130 (337)
T KOG1580|consen 54 LALVFFQCTANTVFAKVLFLI--RKKT-EIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGV 130 (337)
T ss_pred HHHHHHHHHHHHHHHHhheee--cccc-cccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeeh
Confidence 455666666555543222222 2211 1222122234555554477778889999999887777777889999999999
Q ss_pred HHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 028439 117 IFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQ 196 (209)
Q Consensus 117 ~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~ 196 (209)
++.|++-+| +|...++..+.|+++....++.. .+.+.++...|.++++++---=+.-...|
T Consensus 131 l~~~KsY~w------~kY~cVL~IV~GValFmYK~~Kv-------------~g~e~~t~g~GElLL~lSL~mDGlTg~~Q 191 (337)
T KOG1580|consen 131 LFAHKSYHW------RKYCCVLMIVVGVALFMYKENKV-------------GGAEDKTFGFGELLLILSLAMDGLTGSIQ 191 (337)
T ss_pred hhhcccccH------HHHHHHHHHHHHHHHhhcccccc-------------CCCcccccchHHHHHHHHHHhcccchhHH
Confidence 999887765 46999999999998876432321 12233445689999998887777788888
Q ss_pred HHHHhhcCC
Q 028439 197 VRFLRNSKS 205 (209)
Q Consensus 197 k~~~~~~~~ 205 (209)
.|+.+.|.+
T Consensus 192 drira~yq~ 200 (337)
T KOG1580|consen 192 DRIRASYQR 200 (337)
T ss_pred HHHHHhhcc
Confidence 888877764
No 64
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.69 E-value=0.0037 Score=45.48 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Q 028439 13 MMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAG 91 (209)
Q Consensus 13 l~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~g 91 (209)
+++.++||....+.|.+.+ +.++..-.. |..--...+ .+.+.+ ...+.- -.....|++.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~L----------------l~n~~y--~ipf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFL----------------LLNPKY--IIPFLLNQSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHH----------------HHhHHH--HHHHHHHHHHHHHHHHH
Confidence 4578999999999999875 455443331 322111110 011111 224444 5566778899
Q ss_pred hhccchhHHHHhh-cchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439 92 IYYSSPTLSTALL-NLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (209)
Q Consensus 92 l~~t~a~~asii~-~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l 146 (209)
+..++-+.+.-+. ++.=++|.+.++++.+|..+++ .++|+.+.+.|+.+
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL 111 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence 9999999998886 6788899998987777765543 59999999999865
No 65
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.52 E-value=0.01 Score=41.62 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=33.6
Q ss_pred HHHH-HHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHH
Q 028439 78 GFLG-TSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIV 139 (209)
Q Consensus 78 g~~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l 139 (209)
.+.+ ...++++..++++.|.+.+ ++...+..+.+.+.+.++++|++|.+| ++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 4445 7888899999999999998 566679999999999999999998764 787654
No 66
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.35 E-value=0.0021 Score=53.38 Aligned_cols=133 Identities=13% Similarity=0.093 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028439 9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG 88 (209)
Q Consensus 9 ~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~ 88 (209)
..+.+.+.+.=+..++..|..-+ ..+......+=-+++.+.-+........-+. +...||+..+..+|++|.+.|.+.
T Consensus 193 t~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P~cgkdr~l~~~lGvfgfigQIll 270 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQL-PHCGKDRWLFVNLGVFGFIGQILL 270 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceec-CccccceEEEEEehhhhhHHHHHH
Confidence 45556666666667777776523 2444433333333333332222211222223 345788888999999999999999
Q ss_pred HHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 89 YAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 89 ~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
..|+|---|+-.+++.++--++..+...++++|..|+. .|.|.++.+.-.+++..
T Consensus 271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence 99999999999999999999999999999999987765 47887777666665543
No 67
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.52 E-value=0.19 Score=43.83 Aligned_cols=139 Identities=14% Similarity=0.201 Sum_probs=95.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHH
Q 028439 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDG---MSNLVFVFYSKAFASLVLLPASLLFHR---SQIPPLTLPILSAFFLLG 78 (209)
Q Consensus 5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~---~~p~~l~~~R~~~a~l~l~~~~~~~~r---~~~~~~~~~~~~~~~~lg 78 (209)
...+.+..+++++.||.+.++.|.=..++ +|--.+..+=-++..+++.|..+...+ .+.+-++..+...+++.+
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 35678889999999999999999855432 444333333344556666665544222 222222344566678899
Q ss_pred HHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 79 FLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 79 ~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
++| ++.-+++.+|.-.|++-.+++=+++.--..++.-.++.+.+. +...++|.+..+.|-+.+..
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~------S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHP------SALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHhheec
Confidence 999 999999999999999999988777433344555555555544 45679999999999887764
No 68
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.21 E-value=0.15 Score=41.10 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHH
Q 028439 81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF 145 (209)
Q Consensus 81 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~ 145 (209)
....+.+..+-+++.++..-+....+.++++.+++.++++|+++.. ++.|+.+.+.|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 3666677889999999999999999999999999999999998765 5899988888763
No 69
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.92 Score=38.62 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhc--chHHHHH
Q 028439 35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN--LVPGFTF 112 (209)
Q Consensus 35 ~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~--~~Pv~~~ 112 (209)
+|..+.+.+-+.+.++= ..+...++.. ....+.|......++...+...+.+.+++|.+=-.-.+==. +.|++
T Consensus 50 ~~~fL~~~q~l~~~~~s--~~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm-- 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVS--YAMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM-- 124 (327)
T ss_pred ccHHHHHHHHHHHHHHH--HHHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH--
Confidence 56667777666665553 2223333322 22344577788888888888999999999976443333223 56665
Q ss_pred HHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHH
Q 028439 113 ILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAW 192 (209)
Q Consensus 113 lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y 192 (209)
+...++.+.|.+.+ |.+...+.-.|+.+....+..+ .. ...++++..+|..++...-+.=++-
T Consensus 125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~----------~~~g~~ns~~G~~Ll~~~L~fDgfT 187 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SS----------SKSGRENSPIGILLLFGYLLFDGFT 187 (327)
T ss_pred HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Cc----------cccCCCCchHhHHHHHHHHHHHhhH
Confidence 55788888887654 4666666678886654432211 00 1122344578999999888888888
Q ss_pred HHHHHHHHhhcC
Q 028439 193 FIVQVRFLRNSK 204 (209)
Q Consensus 193 ~vl~k~~~~~~~ 204 (209)
+..|+++.++|.
T Consensus 188 n~tQd~lf~~~k 199 (327)
T KOG1581|consen 188 NATQDSLFKKYK 199 (327)
T ss_pred HhHHHHHhccCC
Confidence 889999888554
No 70
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.48 E-value=0.076 Score=43.60 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439 69 PILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (209)
Q Consensus 69 ~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~ 147 (209)
..|..+.++++.+.+.|.+.|.-+.+-+|-..|++.++--.||.+.+++++..+++.|| |+|.++.+.|...=
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhH
Confidence 34667888888888999999999999999999999999999999999999999998765 89999999988553
No 71
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.50 E-value=0.0053 Score=50.46 Aligned_cols=166 Identities=12% Similarity=0.106 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028439 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF 87 (209)
Q Consensus 8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~ 87 (209)
.++..++=++.||+.+.+... -|=+|..-..- ..++++++....++. . +|..+.+.+.--++-|.+-...|..
T Consensus 3 ~~liaL~P~l~WGsip~v~~k---~GG~p~qQ~lG-tT~GALifaiiv~~~-~--~p~~T~~~~iv~~isG~~Ws~GQ~~ 75 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANK---FGGKPYQQTLG-TTLGALIFAIIVFLF-V--SPELTLTIFIVGFISGAFWSFGQAN 75 (288)
T ss_pred hHHHHHHHHHHhcccceeeee---cCCChhHhhhh-ccHHHHHHHHHHhee-e--cCccchhhHHHHHHhhhHhhhhhhh
Confidence 456667778999998877543 13455544332 334444444443333 2 3445555555444444444888999
Q ss_pred HHHHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHH---HHHHHHHHHHHHHHhcCCccccCCCCCC
Q 028439 88 GYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSV---GTIVLITGAFIMTYYKGPHLLMTSLPPN 163 (209)
Q Consensus 88 ~~~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~---G~~l~~~Gv~l~~~~~g~~~~~~~~~~~ 163 (209)
++-++++.+.++|.=+.+ +.=+-+.+++++.++|--+..+ .++ ++++.+.|+.+-+..+..+
T Consensus 76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~n--------- 141 (288)
T COG4975 76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRNN--------- 141 (288)
T ss_pred hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeecccc---------
Confidence 999999999999876665 6667778888999999765543 233 3445555665543221100
Q ss_pred CCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 028439 164 SSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQV 197 (209)
Q Consensus 164 ~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k 197 (209)
.+ .++.++...|...++.+.+.|-.|.++.+
T Consensus 142 k~---~~~~~n~kkgi~~L~iSt~GYv~yvvl~~ 172 (288)
T COG4975 142 KE---EENPSNLKKGIVILLISTLGYVGYVVLFQ 172 (288)
T ss_pred cc---ccChHhhhhheeeeeeeccceeeeEeeec
Confidence 00 11223455777777778888887777644
No 72
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=0.041 Score=46.92 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=80.1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHH
Q 028439 2 GKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFL 80 (209)
Q Consensus 2 ~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~lg~~ 80 (209)
+++...+....+.+.++.|.++++-|.+... ... ... +..+. .+.+ ++ +....|++
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~---------------ra~~gg~~yl--~~--~~Ww~G~l 72 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGL---------------RAGEGGYGYL--KE--PLWWAGML 72 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hcc---------------cccCCCcchh--hh--HHHHHHHH
Confidence 3444455556666777788888888877543 100 000 11111 1111 22 34455655
Q ss_pred H-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 81 g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
- .+....-|.+..+.|++..+-+-++.-+.-++++..+++||++++ ..+|..++++|..+++.
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence 5 556666667888889998888889999999999999999999876 47899999999987763
No 73
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.41 E-value=2.9 Score=35.70 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=80.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhc
Q 028439 32 DGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IP-----PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN 105 (209)
Q Consensus 32 ~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~-----~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~ 105 (209)
..+++.++.+.-.+..++.=....+ ..+. ++ +.+++-+..+++++.+|+..|.+.++-++.-.+-.-+.|+.
T Consensus 198 ~k~s~~~mM~~vNLf~~i~~~~~li--~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 198 YKVSSLHMMFGVNLFSAILNGTYLI--LQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred CCccHhHHHHHHHHHHHHHHHHhhh--cCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence 4688998888877776655433322 1211 11 12344567789999999888888888888888887788888
Q ss_pred chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 106 LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 106 ~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
+==.+.++++.+.++.++++.| |.|+.+.+.|..+=.
T Consensus 276 tRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEI 312 (327)
T ss_pred HHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHH
Confidence 8889999999999999998765 788999988886644
No 74
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=0.21 Score=41.97 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcC----CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchH
Q 028439 35 SNLVFVFYSKAFASLVLLPASLLFHRS----QIPP--LTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVP 108 (209)
Q Consensus 35 ~p~~l~~~R~~~a~l~l~~~~~~~~r~----~~~~--~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~P 108 (209)
.|+....++.+....+-..+.....+- ..|+ ++.+..+.+.=+.+.-.+...+-++.++|.+.+.=-+=-.+.-
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 477788888877665554443322211 1122 3334344443344332222333345666666553222234666
Q ss_pred HHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHH
Q 028439 109 GFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVF 188 (209)
Q Consensus 109 v~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~ 188 (209)
+|+.++++.++|+|-+... ..+..+.+.|--+ |...+ +..+.-...|.++...|.++
T Consensus 140 vFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~l-----GvdqE------------~~~~~ls~~GvifGVlaSl~ 196 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGL-----GVDQE------------GSTGTLSWIGVIFGVLASLA 196 (347)
T ss_pred hHHHHhHHhhccccccccc------ceeehhheehhee-----ccccc------------cccCccchhhhHHHHHHHHH
Confidence 8999999999999866432 3343343334321 21111 01122235899999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 028439 189 TSAWFIVQVRFLRNS 203 (209)
Q Consensus 189 ~a~y~vl~k~~~~~~ 203 (209)
-|...+..||.+...
T Consensus 197 vAlnaiytkk~l~~v 211 (347)
T KOG1442|consen 197 VALNAIYTKKVLPPV 211 (347)
T ss_pred HHHHHHhhheecccc
Confidence 999999988765443
No 75
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=2.3 Score=36.35 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC-CCCHHHHHHHHHHHH
Q 028439 7 APVIGMMMAECAHVGLMFAGKAAMS-DGMSNLVFVFYSKAFASLVLLPASLLFHRS-----QIP-PLTLPILSAFFLLGF 79 (209)
Q Consensus 7 ~~~l~ll~~~~~wg~~~i~~k~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~-----~~~-~~~~~~~~~~~~lg~ 79 (209)
++|..+....+.=....+..|...+ .+.+-+.+.++.-+.+...+..+.+..+-. ..+ ..+...+..+.+-++
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 4677777777777777788888664 357778888999888877776665443210 011 112233455566666
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 80 LGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 80 ~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
+|..-.++-++..+.+||..-++.-...=..+.+...++++++.++ ..++|+.+++.|-++=.
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence 6677778888999999999888887555555666666677777764 46999999999986643
No 76
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=89.66 E-value=1.5 Score=36.91 Aligned_cols=131 Identities=13% Similarity=0.076 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHH
Q 028439 64 PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPT-LSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLIT 142 (209)
Q Consensus 64 ~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~-~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~ 142 (209)
++++.|++...+.+= ...+.+-++++++-=+- .=-++-.-.++-++++++++.+.|-+.+ |+..+++.-+
T Consensus 60 ~kiplk~Y~i~V~mF---F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi 130 (330)
T KOG1583|consen 60 PKIPLKDYAITVAMF---FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI 130 (330)
T ss_pred CCCchhhhheehhee---eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence 567777765433332 23344445666662221 2223335678889999999998887665 5889999999
Q ss_pred HHHHHHHhcCCccccCCCCCCCCcccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439 143 GAFIMTYYKGPHLLMTSLPPNSSLQVF-MPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS 205 (209)
Q Consensus 143 Gv~l~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~ 205 (209)
|+++-.+.+.++... .+.+-+..++ ..-..|.+|..++..|-+.-|.-.+.|++.-|||..
T Consensus 131 GiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK 192 (330)
T KOG1583|consen 131 GIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK 192 (330)
T ss_pred hheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998776544332211 0000000001 122347799999999999999999999998888864
No 77
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=89.45 E-value=7.7 Score=32.98 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=90.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHHHHHHHH----HhhcC---CCCCCCHHHHHH--
Q 028439 4 VGLAPVIGMMMAECAHVGLMFAGKA-AMSDGMSNLVFVFYSKAFASLVLLPASL----LFHRS---QIPPLTLPILSA-- 73 (209)
Q Consensus 4 ~~~~~~l~ll~~~~~wg~~~i~~k~-~~~~~~~p~~l~~~R~~~a~l~l~~~~~----~~~r~---~~~~~~~~~~~~-- 73 (209)
+-..+.++.++++++-+.-++.-.. ....+++|+..+.+.-+.+.+++..++. ....+ ..++-.+.||..
T Consensus 173 ~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~ 252 (372)
T KOG3912|consen 173 SIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAF 252 (372)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHH
Confidence 3456778899999999999888544 4456799999999997777555433322 21111 112223444432
Q ss_pred ----------HHHHHHHH--HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHH
Q 028439 74 ----------FFLLGFLG--TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLI 141 (209)
Q Consensus 74 ----------~~~lg~~g--~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~ 141 (209)
+.+.|+.- +.++..-..=-++.+|++=.++-.+=-.++.+++.....|++..- ++.|.++-.
T Consensus 253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi 326 (372)
T KOG3912|consen 253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILI 326 (372)
T ss_pred HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHH
Confidence 23333332 233322223335678888888888888888888999999998764 589999999
Q ss_pred HHHHHH
Q 028439 142 TGAFIM 147 (209)
Q Consensus 142 ~Gv~l~ 147 (209)
.|+++-
T Consensus 327 ~Gi~lY 332 (372)
T KOG3912|consen 327 MGIILY 332 (372)
T ss_pred HHHHHH
Confidence 998763
No 78
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=87.95 E-value=0.058 Score=44.50 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028439 7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQF 86 (209)
Q Consensus 7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~ 86 (209)
|+...++.+.+-+-.+.+..+.-.-++.+.+.--+.-+.++++++.. ++..++.++..+. -.+-|++-...+.
T Consensus 152 kgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~------~~~~~~~~K~t~~-nii~G~~Wa~GNl 224 (288)
T COG4975 152 KGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF------FKMEKRFNKYTWL-NIIPGLIWAIGNL 224 (288)
T ss_pred hheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh------cccccchHHHHHH-HHhhHHHHHhhHH
Confidence 34444445555555555555543223455554445556666655431 1212233333443 4556666667777
Q ss_pred HHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 87 ~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
+++++-+....+.+=.+..+.-++..+-+.++++||=|+|++ ..-+.|+++.+.|+.++.
T Consensus 225 ~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg 284 (288)
T COG4975 225 FMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence 778887776666555666677777777788999999888774 456778888888887654
No 79
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.61 E-value=11 Score=28.86 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhh-cchHHHHHH
Q 028439 35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALL-NLVPGFTFI 113 (209)
Q Consensus 35 ~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~-~~~Pv~~~l 113 (209)
+|+.-.+.-+..+.+++..+.+..+++.......+.-.+...-|++|..+-..-........++....+. .-.=+.-++
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~gll 112 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLL 112 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999888877632222111111111233444555555555555555555555543333 333334444
Q ss_pred HHHH-HhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439 114 LAII-FRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (209)
Q Consensus 114 la~~-~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~ 147 (209)
+..+ +++++ ++.++..|++|+++.++|++++
T Consensus 113 iD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 113 IDHFGWFGVP---KRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence 4433 22222 2345678899999999996554
No 80
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=86.69 E-value=19 Score=30.92 Aligned_cols=134 Identities=18% Similarity=0.173 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhcCCC----C---CCC----HHHHH
Q 028439 8 PVIGMMMAECAHVGLMFAGKAAMSDG----MSNLVFVFYSKAFASLVLLPASLLFHRSQI----P---PLT----LPILS 72 (209)
Q Consensus 8 ~~l~ll~~~~~wg~~~i~~k~~~~~~----~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~----~---~~~----~~~~~ 72 (209)
+......+.++-|.-..+.+..++.. =+|++..+.=.-.-.+.++|..+..++... + ..+ .+...
T Consensus 165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g 244 (349)
T KOG1443|consen 165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIG 244 (349)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHH
Confidence 45555666666666666777666431 256666555555556666777666554221 0 011 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439 73 AFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (209)
Q Consensus 73 ~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~ 147 (209)
.+.+.|+...+--...+.=+..|+.-..++.--.-=+.+.+++..+.+|+++. ..|.|..++..|+.+=
T Consensus 245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~------lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL------LNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh------hHHHHHHHHHHHHHHh
Confidence 33333333322222233334444444444444445577888999999999974 4699999999999763
No 81
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=84.53 E-value=26 Score=30.44 Aligned_cols=183 Identities=16% Similarity=0.126 Sum_probs=105.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcC-C----CCCCCHHHHHHHH
Q 028439 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRS-Q----IPPLTLPILSAFF 75 (209)
Q Consensus 1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~-~----~~~~~~~~~~~~~ 75 (209)
|+.+-..+.+.-.++.++=|+.++=.|..-+-.-....+. +.+-+-++.|+......- . ....+...+....
T Consensus 1 m~~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~ 77 (344)
T PF06379_consen 1 MNSAIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTF 77 (344)
T ss_pred CCchHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHH
Confidence 6666777888888889999999998888643322333333 334444555654322111 0 0112334555666
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhc--cCCcccccchhhHHHHHHHHHHHHHHHHhcC
Q 028439 76 LLGFLGTSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVE--KLDWRSSSSLAKSVGTIVLITGAFIMTYYKG 152 (209)
Q Consensus 76 ~lg~~g~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E--~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g 152 (209)
+.|++-......|=.+++|..-+.. ++...++-++-.++-.++.++ .+ ..+..++.-++|++++++|+.+.... |
T Consensus 78 l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l-~~~~~g~~vL~Gv~v~LiGIai~g~A-G 155 (344)
T PF06379_consen 78 LFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDEL-LATPSGQIVLLGVAVCLIGIAICGKA-G 155 (344)
T ss_pred HHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCccccc-ccCCCchhhhhHHHHHHHHHHHHhHH-H
Confidence 6777655666677788888777754 233344444444443333221 11 11223566789999999999887632 2
Q ss_pred CccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 028439 153 PHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIV 195 (209)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl 195 (209)
.. ++. +......+.+...|.+..+.|.+--|++++-
T Consensus 156 ~~------Ke~-~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 156 SM------KEK-ELGEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred Hh------hhh-hhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 11 000 0000112334568999999998888887764
No 82
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=84.01 E-value=22 Score=29.22 Aligned_cols=120 Identities=9% Similarity=-0.047 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCC-CHHHHHHHHHHHHHH-H
Q 028439 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLL-FHRSQIPPL-TLPILSAFFLLGFLG-T 82 (209)
Q Consensus 6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~-~~r~~~~~~-~~~~~~~~~~lg~~g-~ 82 (209)
..+.++.++++++-|...+.....++++-.|+..--.+..+-+++...+... ..+.+..+. -.+.+-...+.-++. +
T Consensus 113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a 192 (244)
T PF04142_consen 113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA 192 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence 4567788888999999999998888765456655555555555544443322 221111111 012222223333333 5
Q ss_pred HHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCc
Q 028439 83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDW 125 (209)
Q Consensus 83 ~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~ 125 (209)
..-.....-+||.+.-.=..-.+..=+++.+++..+++.+++.
T Consensus 193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 5555666788998888777777888899999999999998875
No 83
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=81.57 E-value=14 Score=30.47 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=81.7
Q ss_pred HHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 028439 24 FAGKAAMS-DGMSNLVFVFYSKAFASLVLLPASLLFHRSQIP----PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPT 98 (209)
Q Consensus 24 i~~k~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~----~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~ 98 (209)
+.+|...+ ....-.+-.++..+++..+++.+.+..+..... ..+......+++-|+....-.++.-|.++-++.+
T Consensus 172 L~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSST 251 (309)
T COG5070 172 LIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSST 251 (309)
T ss_pred HHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhh
Confidence 34554432 235667889999999998888887765432211 1222334455555655566677778889999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439 99 LSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (209)
Q Consensus 99 ~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l 146 (209)
.-+.+-++.-.-..+.+.+++.|+.+.. ++..+++++...++
T Consensus 252 tySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~i 293 (309)
T COG5070 252 TYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAI 293 (309)
T ss_pred HHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHH
Confidence 8888888888888898999999998753 58888888764433
No 84
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=79.58 E-value=8.6 Score=32.56 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=78.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhc--CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchH
Q 028439 34 MSNLVFVFYSKAFASLVLLPASLLFHR--SQI---PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVP 108 (209)
Q Consensus 34 ~~p~~l~~~R~~~a~l~l~~~~~~~~r--~~~---~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~P 108 (209)
-+...+.++.+.++.+.++........ ..+ ...+.|.....++.+..|.+.+.+...=++.-.|..|+.+.+.=-
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRK 297 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARK 297 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHh
Confidence 455677888888888776655443211 001 123466777778888777555555566677778889999998889
Q ss_pred HHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHh
Q 028439 109 GFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY 150 (209)
Q Consensus 109 v~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~ 150 (209)
.+|.+++.+++.+++|.. -..|.++.+.|+++=...
T Consensus 298 avTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 298 AVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred HHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhccc
Confidence 999999999999888754 356777888999875543
No 85
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=74.59 E-value=43 Score=27.93 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HHHHHHHHH
Q 028439 9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLG-FLGTSSQFF 87 (209)
Q Consensus 9 ~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg-~~g~~~~~~ 87 (209)
+++.+++.+++|++++-.|.- +. -|++.+-++-. +++.+..+.....+. .++.. .+..+| .+-+..+.+
T Consensus 2 ~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~--~~i~~~g~~v~~~~~-~p~f~-----p~amlgG~lW~~gN~~ 71 (254)
T PF07857_consen 2 YIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMC--SGIFLVGLVVNLILG-FPPFY-----PWAMLGGALWATGNIL 71 (254)
T ss_pred chhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHH--HHHHHHHHHHHHhcC-CCcce-----eHHHhhhhhhhcCcee
Confidence 577889999999999999974 43 57754433322 222222222222222 23221 233333 443556666
Q ss_pred HHHHhhccchhHHHHhhcchHHHH-HHHHHH-HhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccC-CCC---
Q 028439 88 GYAGIYYSSPTLSTALLNLVPGFT-FILAII-FRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT-SLP--- 161 (209)
Q Consensus 88 ~~~gl~~t~a~~asii~~~~Pv~~-~lla~~-~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~-~~~--- 161 (209)
-.-.++...-+.+-.+=+..=+++ ...+++ +++++.+.-. ......+|++++++|..+...-+.+..+.. +..
T Consensus 72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~ 150 (254)
T PF07857_consen 72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETP 150 (254)
T ss_pred ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCCCCccccccccc
Confidence 677788877777766666433333 333433 3333322211 245678899999999877654333221110 000
Q ss_pred --CC-----CCc---ccCC-------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439 162 --PN-----SSL---QVFM-------PQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNS 203 (209)
Q Consensus 162 --~~-----~~~---~~~~-------~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~ 203 (209)
.+ .++ ..+. ...+...|..+.+.+.+.|+...+=.....++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 151 LSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 00 000 0000 111356899999999999998877655555544
No 86
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=73.86 E-value=22 Score=27.67 Aligned_cols=44 Identities=7% Similarity=0.005 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028439 139 VLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRN 202 (209)
Q Consensus 139 l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~ 202 (209)
+++.|+.++...+ +.++.--.+..+.+++.++.-.++-....+|
T Consensus 114 CaVLgvaLln~~~--------------------~~~f~qsv~~gf~a~lGfslvmvlfA~iRER 157 (193)
T COG4657 114 CAVLGVALLNINE--------------------GHNFLQSVVYGFGAALGFSLVMVLFAAIRER 157 (193)
T ss_pred hHHHHHHHHHhhh--------------------hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Confidence 5677888876432 2334556777789999999988886665554
No 87
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=73.00 E-value=5.5 Score=32.74 Aligned_cols=107 Identities=14% Similarity=0.210 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCc
Q 028439 75 FLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPH 154 (209)
Q Consensus 75 ~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~ 154 (209)
+..+++-....+.-.-++||.+...=++.-++.-+.++....++++.|++--. ....++-+.--+.-.+ |+.
T Consensus 72 fpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w--~D~ 143 (309)
T COG5070 72 FPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATW--GDQ 143 (309)
T ss_pred cCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhcc--chh
Confidence 33444333444445678999999999999999999999999999998886432 3333333333322221 110
Q ss_pred cccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439 155 LLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFL 200 (209)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~ 200 (209)
| +..........|.+|+...+++-+.|....|+..
T Consensus 144 ----------q-~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri 178 (309)
T COG5070 144 ----------Q-ASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRI 178 (309)
T ss_pred ----------h-HHHHHhcccCCceEEEehhhHhHHHHHHHHHHhh
Confidence 0 0000011234689999999999999999988764
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=66.31 E-value=25 Score=28.05 Aligned_cols=97 Identities=8% Similarity=0.022 Sum_probs=58.6
Q ss_pred HHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccc---------cCCCCCCCCcccCCC
Q 028439 101 TALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLL---------MTSLPPNSSLQVFMP 171 (209)
Q Consensus 101 sii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~---------~~~~~~~~~~~~~~~ 171 (209)
....+..|+++++......+||.+ +.|+++.++...|++.-...+.+... ..+....++ ....
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~------~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~--~~~~ 79 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVT------QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSA--KTLM 79 (222)
T ss_pred HHHHhcchHHHHHhcccccceeee------hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCc--cccc
Confidence 455578889999988888888876 34799999998988643222111000 000000000 0001
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439 172 QTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS 205 (209)
Q Consensus 172 ~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~ 205 (209)
..+...|....+.++.+=+.-.+.+++..++++.
T Consensus 80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~ 113 (222)
T TIGR00803 80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDT 113 (222)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC
Confidence 1234578777888888888888888887776543
No 89
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=63.57 E-value=13 Score=28.29 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=32.7
Q ss_pred HhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 91 GIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 91 gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
|+.--+.-.++++.|+.|+++++++.++. +.+.... ...++|++++.++.+++.
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La-~~L~~~e---~~~~~~~~lg~~l~fl~~ 121 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILA-QYLFFSE---LIVIFGAFLGLALGFLLA 121 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh---HHHHHHHHHHHHHHHHHH
Confidence 55556677889999999999999887652 1221111 112455555555555554
No 90
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=61.11 E-value=38 Score=21.12 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439 133 KSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK 204 (209)
Q Consensus 133 ~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~ 204 (209)
.++|.++.++|++.+.. .| -|.+.++.+-..+|.+.-..|+..++..
T Consensus 5 ~v~G~~lv~~Gii~~~l-PG------------------------pG~l~i~~GL~iLa~ef~wArr~l~~~~ 51 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPL-PG------------------------PGLLVIFLGLAILATEFPWARRLLRRLR 51 (53)
T ss_pred hhHHHHHHHHHHHhhcC-CC------------------------CcHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 47899999999977652 22 1556667777888999999888876543
No 91
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=57.28 E-value=70 Score=22.98 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=30.5
Q ss_pred HHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHH
Q 028439 90 AGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF 145 (209)
Q Consensus 90 ~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~ 145 (209)
+|-+.-|+.+--+++= .+=..-..++.++++|++++. ...|-++.+.++.
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~ 104 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVY 104 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhh
Confidence 4555566666666663 233333456788999999875 3666655544443
No 92
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=56.43 E-value=73 Score=22.99 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 028439 9 VIGMMMAECAHVGLMFAGKAAMSDGMSNL------VFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGT 82 (209)
Q Consensus 9 ~l~ll~~~~~wg~~~i~~k~~~~~~~~p~------~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~ 82 (209)
...++.+.++||....+.|.+.. +.+.. ...++|-... . ..+++.+.. +++- -
T Consensus 5 ~~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe~~t---------------l-~l~w~Y~iP-FllN---q 63 (125)
T KOG4831|consen 5 MDKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQEMKT---------------L-FLNWEYLIP-FLLN---Q 63 (125)
T ss_pred HHHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHHHHH---------------H-HHhHHHHHH-HHHH---H
Confidence 35678889999999999998753 33322 1222221110 0 012222222 2222 2
Q ss_pred HHHHHHHHHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439 83 SSQFFGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (209)
Q Consensus 83 ~~~~~~~~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~ 147 (209)
....+|+.-++.++-+.|.=+.+ +.-.|+.+.+..+. |+.. ++..++|..+.+.|+.+.
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LG-E~~~-----g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALG-EETQ-----GGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhc-cccc-----cceeehhhhHHhhhhhhe
Confidence 33455667788888777765554 56678888876665 5543 334688999999998664
No 93
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=54.79 E-value=90 Score=23.51 Aligned_cols=29 Identities=10% Similarity=0.004 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439 175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNS 203 (209)
Q Consensus 175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~ 203 (209)
.....+..+.++..|.-|...+||+.+.+
T Consensus 119 ~i~~l~~~li~a~IwipYf~~S~RVK~TF 147 (149)
T PF10754_consen 119 AIRELLRSLIAAAIWIPYFLRSKRVKNTF 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 34667778999999999999999987654
No 94
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=51.63 E-value=1.9e+02 Score=26.42 Aligned_cols=18 Identities=0% Similarity=0.069 Sum_probs=15.2
Q ss_pred HHHhhcchHHHHHHHHHH
Q 028439 100 STALLNLVPGFTFILAII 117 (209)
Q Consensus 100 asii~~~~Pv~~~lla~~ 117 (209)
++.+++++|+++++++-+
T Consensus 310 ~~~~qslNp~~ii~l~P~ 327 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVF 327 (493)
T ss_pred HHHHHhHhHHHHHHHHHH
Confidence 678899999999988754
No 95
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=51.40 E-value=1.6e+02 Score=25.25 Aligned_cols=161 Identities=11% Similarity=0.135 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHh-CCCChH--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439 18 AHVGLMFAGKAAMS-DGMSNL--VFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYY 94 (209)
Q Consensus 18 ~wg~~~i~~k~~~~-~~~~p~--~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~ 94 (209)
.+=.+...-...++ .++.|. .+++.+++.=..+-+.-.... +.+++..++| ....++++-.....+.+-++-|
T Consensus 54 ~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~r---tY~~la~~t~gtmGLsn~SlgY 129 (367)
T KOG1582|consen 54 LYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWR---TYVILAFLTVGTMGLSNGSLGY 129 (367)
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchh---HhhhhHhhhhhccccCcCcccc
Confidence 33344445555543 356664 566666655433222111111 1122234444 3444444434444444445555
Q ss_pred cchhHHHHhhc--chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCC
Q 028439 95 SSPTLSTALLN--LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQ 172 (209)
Q Consensus 95 t~a~~asii~~--~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 172 (209)
.+=-.-.+.-. +.|++ +.++++-+.| .+..+.....+-..|.++..+.+.. ..++
T Consensus 130 LNYPtQviFKccKliPVm--iggifIqGkR------Y~v~d~~aA~lm~lGli~FTLADs~---------------~sPN 186 (367)
T KOG1582|consen 130 LNYPTQVIFKCCKLIPVM--IGGIFIQGKR------YGVHDYIAAMLMSLGLIWFTLADSQ---------------TSPN 186 (367)
T ss_pred ccCcHHHHHHhhhhhhhh--heeeeecccc------ccHHHHHHHHHHHHHHHhhhhcccc---------------cCCC
Confidence 44332223323 56665 4466666555 3556788888888999887654321 1122
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 028439 173 TNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSE 206 (209)
Q Consensus 173 ~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~~ 206 (209)
. ...|..++-+|-++=|+---+|.+..+.+|++
T Consensus 187 F-~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~s 219 (367)
T KOG1582|consen 187 F-NLIGVMMISGALLADAVIGNVQEKAMKMNPAS 219 (367)
T ss_pred c-ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCC
Confidence 2 25899999999999999889999999988865
No 96
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=50.56 E-value=15 Score=27.54 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 028439 175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQL 209 (209)
Q Consensus 175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~~~~~ 209 (209)
..+|-++.-.=.+.|++|.+.+|.+-++-++-+|+
T Consensus 104 ~~LgwIL~gVf~lIWslY~~~~~~l~ededSGLsL 138 (138)
T PF07123_consen 104 NLLGWILLGVFGLIWSLYFVYTSTLDEDEDSGLSL 138 (138)
T ss_pred chhHHHHHHHHHHHHHHHHhhccccCCCcccCcCC
Confidence 35777777777889999999999987776666654
No 97
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=42.30 E-value=52 Score=28.02 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 82 TSSQFFGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 82 ~~~~~~~~~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
.....+.+.|++.-+++...-+.+ ..-..+.+-+.++++|--+...+.--.-..|.++.+.|+.++.
T Consensus 224 ~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~ 291 (300)
T PF05653_consen 224 VLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLS 291 (300)
T ss_pred HHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheee
Confidence 455556677999888776443333 4445666667888887544322112234567888888888875
No 98
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=41.71 E-value=46 Score=25.43 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=22.5
Q ss_pred HhhccchhHHHHhhcchHHHHHHHHHHHh
Q 028439 91 GIYYSSPTLSTALLNLVPGFTFILAIIFR 119 (209)
Q Consensus 91 gl~~t~a~~asii~~~~Pv~~~lla~~~~ 119 (209)
++...+...++.+.|+.|++.++.+..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667789999999999998876654
No 99
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=34.52 E-value=34 Score=24.60 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=17.6
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 028439 129 SSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 129 ~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
|.+.+++|..++++|+.++.+
T Consensus 83 Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 83 PDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred CChHHHHhHHHHHHhHHheEe
Confidence 456789999999999988763
No 100
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=34.14 E-value=82 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=21.4
Q ss_pred hhccchhHHHHhhcchHHHHHHHHHHHh
Q 028439 92 IYYSSPTLSTALLNLVPGFTFILAIIFR 119 (209)
Q Consensus 92 l~~t~a~~asii~~~~Pv~~~lla~~~~ 119 (209)
+...+...++.+.+..|++.++++.++.
T Consensus 62 i~~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 62 IPESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556789999999999998887654
No 101
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=31.54 E-value=34 Score=22.14 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028439 175 WVFGGLLLAVDCVFTSAWFIVQVRFLR 201 (209)
Q Consensus 175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~ 201 (209)
..+|-++.-.-.+.|++|.+.++.+-+
T Consensus 32 ~~LgwIL~gvf~liw~ly~~~~~~l~~ 58 (67)
T PLN00082 32 GKLTWILVGVTALIWALYFSYSSTLPE 58 (67)
T ss_pred chhhhHHHHHHHHHHHHHhheecccCC
Confidence 357777777788999999998776544
No 102
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=30.91 E-value=1.1e+02 Score=17.47 Aligned_cols=20 Identities=5% Similarity=-0.155 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028439 179 GLLLAVDCVFTSAWFIVQVR 198 (209)
Q Consensus 179 ~~l~l~aa~~~a~y~vl~k~ 198 (209)
.++=++.+.+|++|.+...-
T Consensus 8 Vl~Pil~A~~Wa~fNIg~~A 27 (36)
T CHL00196 8 IAAPVLAAASWALFNIGRLA 27 (36)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 34447899999999997443
No 103
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=30.35 E-value=89 Score=18.16 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccc
Q 028439 64 PPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSS 96 (209)
Q Consensus 64 ~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~ 96 (209)
|..++|++..+++.|..+ .....++=+.--+.+
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a~~~lyP~~~ffvP 37 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPAGGMLYPYVKFFVP 37 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred CChhHHHHHHHHHHhhHHHHHHHHhhhheeEecC
Confidence 345678888888888777 555555544443333
No 104
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=29.48 E-value=45 Score=23.88 Aligned_cols=22 Identities=9% Similarity=0.332 Sum_probs=18.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 028439 128 SSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 128 ~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
+|.+.++.|..+|++|+.++.+
T Consensus 83 ~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 83 RPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred CCcHHHhhhHHHHHhceeeeEe
Confidence 3567899999999999877653
No 105
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=28.43 E-value=4.3e+02 Score=23.60 Aligned_cols=55 Identities=16% Similarity=0.021 Sum_probs=29.6
Q ss_pred HHhhccchhHHHHhhcchHHHHHHHHHHH--hhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 90 AGIYYSSPTLSTALLNLVPGFTFILAIIF--RVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 90 ~gl~~t~a~~asii~~~~Pv~~~lla~~~--~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
...+..++..++++.....+...+.+.+. +.+|...| +.-..|.++..+|...+.
T Consensus 287 q~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~----~~~~~g~~~~~~~~~~l~ 343 (495)
T PRK14995 287 QFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR----LVATGGMALSALSFYGLA 343 (495)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHHHH
Confidence 33445677778777655444444443332 44565533 233557766666765543
No 106
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=28.20 E-value=1.2e+02 Score=17.25 Aligned_cols=20 Identities=15% Similarity=-0.052 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028439 179 GLLLAVDCVFTSAWFIVQVR 198 (209)
Q Consensus 179 ~~l~l~aa~~~a~y~vl~k~ 198 (209)
.+.-++.+.+|+.|.+..--
T Consensus 8 Vl~Pil~A~gWa~fNIg~~A 27 (36)
T PF06298_consen 8 VLLPILPAAGWALFNIGRAA 27 (36)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 34457889999999998543
No 107
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=28.09 E-value=30 Score=25.54 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 028439 175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQ 208 (209)
Q Consensus 175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~~~~ 208 (209)
..+|-++.=.=.+.|++|.+.++.+-++-++-+|
T Consensus 103 ~~LgwIL~gVf~lIWslYf~~~~~l~edeDSGLs 136 (137)
T PLN00092 103 NLLGWILLGVFGLIWSLYFVYTSTLEEDEESGLS 136 (137)
T ss_pred cchhhHHHhHHHHHHHHHheeecccCcccccccc
Confidence 3577777777788999999999877666555554
No 108
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=26.48 E-value=33 Score=22.30 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhhccchh
Q 028439 69 PILSAFFLLGFLG--TSSQFFGYAGIYYSSPT 98 (209)
Q Consensus 69 ~~~~~~~~lg~~g--~~~~~~~~~gl~~t~a~ 98 (209)
+.|.++.+.+++| .+++.++..++.|.+|-
T Consensus 26 ~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~ 57 (65)
T PF08370_consen 26 SYWYWIGVGALLGFIVLFNILFTLALTYLNPL 57 (65)
T ss_pred CcEEeehHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3466666777777 88999999999998764
No 109
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=25.66 E-value=1.8e+02 Score=20.78 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHH
Q 028439 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIF 118 (209)
Q Consensus 82 ~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~ 118 (209)
.+|..+...|+.-.+|++++=..-..-++..+.++++
T Consensus 19 ~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlf 55 (104)
T PF11460_consen 19 LLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLF 55 (104)
T ss_pred HHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHh
Confidence 7888888999999999988765554445666667766
No 110
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.17 E-value=2.2e+02 Score=23.67 Aligned_cols=54 Identities=9% Similarity=0.042 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CChHHHHHHHHH----HHHHHHHHHHHH
Q 028439 4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDG-------MSNLVFVFYSKA----FASLVLLPASLL 57 (209)
Q Consensus 4 ~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~-------~~p~~l~~~R~~----~a~l~l~~~~~~ 57 (209)
+|.-+....+++.+++|.+++=.+...+++ -++++..+-.+. .+.+.+..++..
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~ 244 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCII 244 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHh
Confidence 455677888889999999999999987653 256666665543 344445555444
No 111
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=24.88 E-value=68 Score=27.34 Aligned_cols=64 Identities=19% Similarity=0.351 Sum_probs=47.2
Q ss_pred HHH-HHHHHHHHHHhhccchhHHH----HhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 79 FLG-TSSQFFGYAGIYYSSPTLST----ALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 79 ~~g-~~~~~~~~~gl~~t~a~~as----ii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
++. .+.|++..-|+...++-.++ +..++=-.+-.+++.+.++.++++. .|+|..+.+.|.++-.
T Consensus 245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHHH
Confidence 344 78888888888776655554 3444556677778888888888865 5899999999997754
No 112
>COG2246 Predicted membrane protein [Function unknown]
Probab=24.21 E-value=3.1e+02 Score=20.44 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHhh--ccchhHHHHhhcchHHHHHHHHHHHhhccCCcccc
Q 028439 66 LTLPILSAFFLLGFLG-TSSQFFGYAGIY--YSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSS 128 (209)
Q Consensus 66 ~~~~~~~~~~~lg~~g-~~~~~~~~~gl~--~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~ 128 (209)
...++..++...|.++ ..+...+..-.+ ..+...|.++.. .+.++..++..++.+.+.+
T Consensus 8 ~~~~~~lrF~~VG~~~t~V~~~~~~ll~~~~~~~~~~A~~~a~----~~~ii~sf~~N~~wTF~~~ 69 (139)
T COG2246 8 FTLSRLLRFAIVGGLGTLVDFAVLWLLVKALGVPYALANAIAY----EAAIIFSFVLNRRWTFRDR 69 (139)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHhcccchHHHHHHHH----HHHHHHHHHHHceeeEeec
Confidence 3456788999999999 666655555444 344555544444 2333444566777777665
No 113
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=23.75 E-value=58 Score=23.83 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCC
Q 028439 175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNSK-SENQ 208 (209)
Q Consensus 175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~-~~~~ 208 (209)
..+|-++.=.=.+.|++|.+.+|.+-++-+ +-+|
T Consensus 93 ~~LgwIL~gVf~liw~ly~~~~~~l~~~edDsGLs 127 (128)
T PLN00077 93 NLLGWILLGVFGLIWSLYTTYTSDLPEDEEDSGLS 127 (128)
T ss_pred chhhHHHHhHHHHHHHHHhheecccCCcccccccc
Confidence 357777777778899999999988754333 4444
No 114
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=21.56 E-value=1.8e+02 Score=16.95 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028439 180 LLLAVDCVFTSAWFIVQ 196 (209)
Q Consensus 180 ~l~l~aa~~~a~y~vl~ 196 (209)
+.=++.+.+|++|.+..
T Consensus 9 l~Pil~A~~Wa~fNIg~ 25 (40)
T PRK13240 9 LAPILAAAGWAVFNIGK 25 (40)
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 44478999999999974
No 115
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.53 E-value=2.2e+02 Score=24.68 Aligned_cols=67 Identities=7% Similarity=0.153 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439 82 TSSQFFGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (209)
Q Consensus 82 ~~~~~~~~~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~ 148 (209)
.......+.|++.-+++..+-+.+ +--.++...+.+++||--.-.--.--....|....+.|+.++-
T Consensus 238 ~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~ 305 (335)
T KOG2922|consen 238 STQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLH 305 (335)
T ss_pred HHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEee
Confidence 444555678999888887765555 4556666778888998543321111223456667777776653
No 116
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=20.91 E-value=6.3e+02 Score=22.89 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439 173 TNWVFGGLLLAVDCVFTSAWFIVQVRFLRNS 203 (209)
Q Consensus 173 ~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~ 203 (209)
.++..+.++.+++.++|....+....++.+.
T Consensus 124 ~~~~~~~~l~iia~v~~~~~~vfyna~LP~l 154 (477)
T PF11700_consen 124 GQWWLALVLFIIANVGYEASNVFYNAYLPDL 154 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 3467899999999999999999877666543
No 117
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.52 E-value=3.3e+02 Score=23.36 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhc--CC--CCCC-CHHHHHHHHHHHH
Q 028439 6 LAPVIGMMMAECAHVGLMFAGKAAMSD-GMSNLVFVFYSKAFASLVLLPASLLFHR--SQ--IPPL-TLPILSAFFLLGF 79 (209)
Q Consensus 6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~-~~~p~~l~~~R~~~a~l~l~~~~~~~~r--~~--~~~~-~~~~~~~~~~lg~ 79 (209)
..+.+.-+.+.+.-+.+.+..|..+.. +=.-..+.++-...|.+..+|....... +. .++. ..+-|..+.+-|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 345566677777888888888865432 1123467778888898888888665321 11 1233 2344555666667
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439 80 LGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (209)
Q Consensus 80 ~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l 146 (209)
+|+.-++...+=+|.|+|-.=-+=.+-=..--.+++..+.+|.-+... |-+-++.+.|...
T Consensus 264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~ 324 (347)
T KOG1442|consen 264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLA 324 (347)
T ss_pred HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHH
Confidence 773333334445566665421111111112233567788888766543 4455555555543
Done!