Query 028439
Match_columns 209
No_of_seqs 210 out of 1354
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 19:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.9E-07 6.4E-12 69.4 7.1 69 76-150 34-104 (137)
2 3b5d_A Multidrug transporter E 98.5 3.8E-07 1.3E-11 65.3 8.2 68 76-149 34-103 (110)
3 1q90_R Cytochrome B6-F complex 18.6 1.3E+02 0.0046 17.4 3.2 35 64-98 7-42 (49)
4 3mp7_B Preprotein translocase 6.5 3E+02 0.01 16.7 2.0 24 121-144 23-46 (61)
5 2hac_A T-cell surface glycopro 6.5 3.3E+02 0.011 14.4 1.9 15 111-125 16-30 (33)
6 3arc_L Photosystem II reaction 5.4 4.6E+02 0.016 14.1 3.4 21 173-193 15-35 (37)
7 1pi7_A VPU protein, U ORF prot 5.3 4.6E+02 0.016 14.1 3.6 22 180-201 13-34 (36)
8 2jwa_A Receptor tyrosine-prote 5.2 5.2E+02 0.018 14.5 3.1 16 177-192 19-34 (44)
9 3fbl_A Putative uncharacterize 5.2 3.8E+02 0.013 16.4 1.9 15 189-203 22-36 (82)
10 1v54_M VIIIB, IX, cytochrome C 4.6 5E+02 0.017 14.8 2.1 22 120-146 7-28 (46)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.54 E-value=1.9e-07 Score=69.44 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=52.7
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHHHHh-hcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHh
Q 028439 76 LLGFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY 150 (209)
Q Consensus 76 ~lg~~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~ 150 (209)
++|++. .+++++++.++++.+++.+..+ .++.|+++.++++++++|++++++ ++|+.+.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 577777 9999999999999999999888 899999999999999999998764 99999999999988753
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.52 E-value=3.8e-07 Score=65.25 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=61.4
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHHHHh-hcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439 76 LLGFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (209)
Q Consensus 76 ~lg~~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~ 149 (209)
+.++.+ .+++.++..++++.|.+.+..+ ..+.|+++.++++++++|+++++ |++|+.+.++|++.+..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 577777 8899999999999999999877 79999999999999999999865 59999999999988763
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=18.65 E-value=1.3e+02 Score=17.45 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchh
Q 028439 64 PPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSSPT 98 (209)
Q Consensus 64 ~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~ 98 (209)
+.++||++...+.+|..+ .....++-+.--+.+|.
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~ 42 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPS 42 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCc
Confidence 456788888888888776 54444444444444443
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=6.51 E-value=3e+02 Score=16.66 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=14.3
Q ss_pred ccCCcccccchhhHHHHHHHHHHH
Q 028439 121 EKLDWRSSSSLAKSVGTIVLITGA 144 (209)
Q Consensus 121 E~~~~~~~~~~~~~~G~~l~~~Gv 144 (209)
+|++++.-....+..|+.+.+.|.
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~ 46 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGL 46 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455555444455666766666666
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.50 E-value=3.3e+02 Score=14.37 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=9.5
Q ss_pred HHHHHHHHhhccCCc
Q 028439 111 TFILAIIFRVEKLDW 125 (209)
Q Consensus 111 ~~lla~~~~~E~~~~ 125 (209)
-.++..++.+||++.
T Consensus 16 gii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 16 GVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 345556777887754
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.40 E-value=4.6e+02 Score=14.09 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 028439 173 TNWVFGGLLLAVDCVFTSAWF 193 (209)
Q Consensus 173 ~~~~~G~~l~l~aa~~~a~y~ 193 (209)
.+..+|.++++.-++.++-|.
T Consensus 15 TSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhc
Confidence 445699999999999888875
No 7
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=5.34 E-value=4.6e+02 Score=14.05 Aligned_cols=22 Identities=14% Similarity=-0.034 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028439 180 LLLAVDCVFTSAWFIVQVRFLR 201 (209)
Q Consensus 180 ~l~l~aa~~~a~y~vl~k~~~~ 201 (209)
...+.+.+.|.+-.+-.||..+
T Consensus 13 valIiaIVVWtiv~ieYrk~~k 34 (36)
T 1pi7_A 13 VAIIIAIVVWSIVIIEGRGGKK 34 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4557788889887777777654
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=5.22 E-value=5.2e+02 Score=14.52 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028439 177 FGGLLLAVDCVFTSAW 192 (209)
Q Consensus 177 ~G~~l~l~aa~~~a~y 192 (209)
.|.++.+..++.+.+|
T Consensus 19 VGvll~vi~~l~~~~~ 34 (44)
T 2jwa_A 19 VGILLVVVLGVVFGIL 34 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4545455555555554
No 9
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=5.16 E-value=3.8e+02 Score=16.39 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhc
Q 028439 189 TSAWFIVQVRFLRNS 203 (209)
Q Consensus 189 ~a~y~vl~k~~~~~~ 203 (209)
|..|+-+..++++.|
T Consensus 22 wgmyiafgekllksy 36 (82)
T 3fbl_A 22 WGMYIAFGEKLLKSY 36 (82)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
No 10
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=4.64 E-value=5e+02 Score=14.78 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=0.0
Q ss_pred hccCCcccccchhhHHHHHHHHHHHHH
Q 028439 120 VEKLDWRSSSSLAKSVGTIVLITGAFI 146 (209)
Q Consensus 120 ~E~~~~~~~~~~~~~~G~~l~~~Gv~l 146 (209)
+|+++.-. +.+|+..++.+.+.
T Consensus 7 ~~~~s~~E-----~aigl~v~f~~~L~ 28 (46)
T 1v54_M 7 KTPTSPKE-----QAIGLSVTFLSFLL 28 (46)
T ss_dssp SSCCCHHH-----HHHHHHHHHHHHHH
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHh
Done!