Query 028439
Match_columns 209
No_of_seqs 210 out of 1354
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 19:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028439.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028439hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 20.1 44 0.0032 15.3 2.9 18 176-193 2-19 (27)
2 d1q90r_ f.23.12.1 (R:) ISP sub 11.8 1.1E+02 0.0077 15.7 3.2 25 64-88 5-30 (39)
3 d1q90a3 f.23.23.1 (A:248-292) 5.1 2.5E+02 0.018 14.5 4.6 29 175-203 4-32 (45)
4 d1rh5b_ f.23.28.1 (B:) Preprot 4.4 1.8E+02 0.013 15.9 1.6 23 122-144 17-39 (56)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 4.2 2.7E+02 0.019 13.6 3.4 21 173-193 15-35 (37)
6 d1vf5c3 f.23.23.1 (C:250-286) 3.4 3.3E+02 0.024 13.4 3.5 29 175-203 5-33 (37)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 3.2 9E+02 0.066 18.1 14.0 62 33-94 264-336 (472)
8 d1v54m_ f.23.7.1 (M:) Mitochon 2.2 5.2E+02 0.038 13.1 2.1 15 132-146 14-28 (43)
9 d1ppjd2 f.23.11.1 (D:196-241) 2.0 4.7E+02 0.034 13.3 1.6 18 43-60 12-29 (46)
10 d1rq6a_ a.4.15.1 (A:) ribosoma 1.9 5.5E+02 0.04 14.0 1.8 13 196-208 13-25 (62)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.12 E-value=44 Score=15.32 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028439 176 VFGGLLLAVDCVFTSAWF 193 (209)
Q Consensus 176 ~~G~~l~l~aa~~~a~y~ 193 (209)
.+|.+..-++.+.||.|-
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 467777778888888873
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.77 E-value=1.1e+02 Score=15.67 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHH
Q 028439 64 PPLTLPILSAFFLLGFLG-TSSQFFG 88 (209)
Q Consensus 64 ~~~~~~~~~~~~~lg~~g-~~~~~~~ 88 (209)
|...+|++..+++.|-.. .....++
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhcc
Confidence 445677888888887765 4433333
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.10 E-value=2.5e+02 Score=14.51 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439 175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNS 203 (209)
Q Consensus 175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~ 203 (209)
-+.|.+..+.+.+.--+..|+-||-.++.
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888889888866653
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.41 E-value=1.8e+02 Score=15.92 Aligned_cols=23 Identities=17% Similarity=0.058 Sum_probs=10.5
Q ss_pred cCCcccccchhhHHHHHHHHHHH
Q 028439 122 KLDWRSSSSLAKSVGTIVLITGA 144 (209)
Q Consensus 122 ~~~~~~~~~~~~~~G~~l~~~Gv 144 (209)
|++++.-....++.|+.+.+.|.
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G~ 39 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLGI 39 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34443332334455555555554
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.19 E-value=2.7e+02 Score=13.60 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 028439 173 TNWVFGGLLLAVDCVFTSAWF 193 (209)
Q Consensus 173 ~~~~~G~~l~l~aa~~~a~y~ 193 (209)
.+..+|.++++.-++-++-|.
T Consensus 15 tsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 445689999988888888875
No 6
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.38 E-value=3.3e+02 Score=13.40 Aligned_cols=29 Identities=7% Similarity=0.022 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439 175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNS 203 (209)
Q Consensus 175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~ 203 (209)
-+.|.+..+.+.+.--+..|+-||-.++.
T Consensus 5 Rv~gl~~F~~~v~laQi~lVlKKKQ~EkV 33 (37)
T d1vf5c3 5 RVKWMIAFICLVMLAQLMLILKKKQVEKV 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46787777777777777888877665554
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.18 E-value=9e+02 Score=18.11 Aligned_cols=62 Identities=8% Similarity=0.077 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH------HhhcCCC----CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhc
Q 028439 33 GMSNLVFVFYSKAFASLVLLPASL------LFHRSQI----PPLTLPILSAFFLLGFLG-TSSQFFGYAGIYY 94 (209)
Q Consensus 33 ~~~p~~l~~~R~~~a~l~l~~~~~------~~~r~~~----~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~ 94 (209)
-++|.++.+.-+..-.+.-..+.. ..+|+.+ +.++++.+.++...|... ......+++...+
T Consensus 264 pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~ 336 (472)
T d1wpga4 264 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMY 336 (472)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888777655443222221 0111111 123456666666666655 5555555555544
No 8
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.21 E-value=5.2e+02 Score=13.09 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHH
Q 028439 132 AKSVGTIVLITGAFI 146 (209)
Q Consensus 132 ~~~~G~~l~~~Gv~l 146 (209)
-+.+|+..++.+.+.
T Consensus 14 E~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 14 EQAIGLSVTFLSFLL 28 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 356777777776643
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.04 E-value=4.7e+02 Score=13.34 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 028439 43 SKAFASLVLLPASLLFHR 60 (209)
Q Consensus 43 R~~~a~l~l~~~~~~~~r 60 (209)
+..+...++..++++.+|
T Consensus 12 Kv~~~l~~l~~l~yy~KR 29 (46)
T d1ppjd2 12 KMLLMMGLLLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 10
>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=1.94 E-value=5.5e+02 Score=14.02 Aligned_cols=13 Identities=0% Similarity=0.041 Sum_probs=8.8
Q ss_pred HHHHHhhcCCCCC
Q 028439 196 QVRFLRNSKSENQ 208 (209)
Q Consensus 196 ~k~~~~~~~~~~~ 208 (209)
.+.+.++|+..++
T Consensus 13 a~~lieky~~~ft 25 (62)
T d1rq6a_ 13 AKEMIETHPGKFT 25 (62)
T ss_dssp HHHHHTTSCCCCC
T ss_pred HHHHHHHchhHhc
Confidence 4556778877765
Done!