BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028441
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S9T7|VP282_ARATH Vacuolar protein sorting-associated protein 28 homolog 2
OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2
Length = 210
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/208 (87%), Positives = 197/208 (94%)
Query: 1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
MEVKLWNDKREREMYENFAEL+AIIKATEKLEKAY+RD+I+ SEYE+ECQKLI HFKTLS
Sbjct: 2 MEVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLS 61
Query: 61 STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
+TLKD VP+IERFADTYKMDCPAAL RLVTSG+PATVEHRA AST+ SA+IVAECVQN
Sbjct: 62 ATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 121
Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
FIT+MDSLKLNMVAVDQV+PLLSDL SLNKL+ILPPDFEGKTKMK+W+SRLSKMGAADE
Sbjct: 122 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADE 181
Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAG 208
LTEQQSRQLHFDLESSYNSFMAALP AG
Sbjct: 182 LTEQQSRQLHFDLESSYNSFMAALPKAG 209
>sp|O65421|VP281_ARATH Vacuolar protein sorting-associated protein 28 homolog 1
OS=Arabidopsis thaliana GN=VPS28-1 PE=1 SV=1
Length = 209
Score = 362 bits (929), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/209 (86%), Positives = 199/209 (95%)
Query: 1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
MEVKLWNDKREREMYENFAELYAIIKATEKLEKAY+RD+IS SEYETECQKLI HFKTLS
Sbjct: 1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLS 60
Query: 61 STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
++LKD+VP+IERFA+TYKMDC AA+ RLVTSGVPATVEHRAAA AST++SA++VAECVQN
Sbjct: 61 ASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQN 120
Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
FIT+MDSLKLNMVAVDQV+PLLSDL SLNKL+ILPPDFEGK KMK+W+ RLSKMGA+DE
Sbjct: 121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDE 180
Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAGT 209
LTEQQ+RQLHFDLESSYNSFMAALPNAG
Sbjct: 181 LTEQQARQLHFDLESSYNSFMAALPNAGN 209
>sp|Q54NF1|VPS28_DICDI Vacuolar protein sorting-associated protein 28 OS=Dictyostelium
discoideum GN=vps28 PE=3 SV=1
Length = 288
Score = 226 bits (575), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 145/203 (71%)
Query: 2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
EVKL+N+ EREMYEN AELY+IIK TE LEKAY+RD +S +Y T C KLIA FK+ +
Sbjct: 84 EVKLFNNNIEREMYENLAELYSIIKVTEHLEKAYIRDDVSPKDYTTACSKLIAQFKSSQT 143
Query: 62 TLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNF 121
LKD V ++ +F Y ++C AA +RLV G P+T+EH ++ + A VAE VQ F
Sbjct: 144 LLKDQVSNVGQFMKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEAVQLF 203
Query: 122 ITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADEL 181
IT MDS++L +V+VD ++PLLSDL+ SLNK L P FEGK K+K+WIS L++M A DEL
Sbjct: 204 ITTMDSIRLKLVSVDGIYPLLSDLMESLNKNQWLGPTFEGKEKIKNWISILNQMKATDEL 263
Query: 182 TEQQSRQLHFDLESSYNSFMAAL 204
+ QSRQL FDL++SYN F A+
Sbjct: 264 DDDQSRQLLFDLDNSYNIFYKAI 286
>sp|Q9V359|VPS28_DROME Vacuolar protein sorting-associated protein 28 homolog
OS=Drosophila melanogaster GN=Vps28 PE=1 SV=1
Length = 210
Score = 165 bits (417), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 123/200 (61%), Gaps = 8/200 (4%)
Query: 2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
EVKL+ + RERE Y+N A+LYAII ++LEKAY+RD I+ EY C K + +K
Sbjct: 11 EVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSKYLVQYKVAFK 70
Query: 62 TLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
++ D PS+E F +++DCPAAL R + P T+ ++ +AE V
Sbjct: 71 QVQCDEFPSVETFVKKFRLDCPAALER-IREDRPITIRD------DKGNTSKCIAEIVSL 123
Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
FIT MD L+L + +D + P + DL ++N+L+++P DF+ K K++ W+ L++M A+DE
Sbjct: 124 FITIMDKLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDE 183
Query: 181 LTEQQSRQLHFDLESSYNSF 200
L+E Q RQ FDLES+Y F
Sbjct: 184 LSEGQVRQFLFDLESAYADF 203
>sp|Q9UK41|VPS28_HUMAN Vacuolar protein sorting-associated protein 28 homolog OS=Homo
sapiens GN=VPS28 PE=1 SV=1
Length = 221
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 126/200 (63%), Gaps = 8/200 (4%)
Query: 2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
EVKL+ + RERE Y+N AEL+A++K + LEKAY++D +S SEY C +L+ +K
Sbjct: 23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFR 82
Query: 62 TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
++ + SI+ F +++DCP A+ R + P T++ + +A+ V
Sbjct: 83 QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRC------IADVVSL 135
Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
FIT MD L+L + A+D++ P L +L+ ++++++ LPPDFEG+ + W+ LS M A+DE
Sbjct: 136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 195
Query: 181 LTEQQSRQLHFDLESSYNSF 200
L + Q RQ+ FDLES+YN+F
Sbjct: 196 LDDSQVRQMLFDLESAYNAF 215
>sp|Q3T178|VPS28_BOVIN Vacuolar protein sorting-associated protein 28 homolog OS=Bos
taurus GN=VPS28 PE=2 SV=1
Length = 221
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 126/200 (63%), Gaps = 8/200 (4%)
Query: 2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
EVKL+ + RERE Y+N AEL+A++K + LEKAY++D ++ +EY C +L+ +K
Sbjct: 23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 82
Query: 62 TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
++ + SI+ F +++DCP A+ R + P T++ + +A+ V
Sbjct: 83 QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRC------IADVVSL 135
Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
FIT MD L+L + A+D++ P L +L+ ++++++ LPPDFEG+ + W+ LS M A+DE
Sbjct: 136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 195
Query: 181 LTEQQSRQLHFDLESSYNSF 200
L + Q RQ+ FDLES+YN+F
Sbjct: 196 LDDSQVRQMLFDLESAYNAF 215
>sp|Q9D1C8|VPS28_MOUSE Vacuolar protein sorting-associated protein 28 homolog OS=Mus
musculus GN=Vps28 PE=2 SV=1
Length = 221
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 126/200 (63%), Gaps = 8/200 (4%)
Query: 2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
EVKL+ + RERE Y+N AEL+A++K + LEKAY++D ++ +EY C +L+ +K
Sbjct: 23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 82
Query: 62 TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
++ + SI+ F +++DCP A+ R + P T++ + +A+ V
Sbjct: 83 QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRC------IADVVSL 135
Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
FIT MD L+L + A+D++ P L +L+ ++++++ LPPDFEG+ + W+ LS M A+DE
Sbjct: 136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 195
Query: 181 LTEQQSRQLHFDLESSYNSF 200
L + Q RQ+ FDLES+YN+F
Sbjct: 196 LDDSQVRQMLFDLESAYNAF 215
>sp|B5DEN9|VPS28_RAT Vacuolar protein sorting-associated protein 28 homolog OS=Rattus
norvegicus GN=Vps28 PE=2 SV=1
Length = 228
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 126/200 (63%), Gaps = 8/200 (4%)
Query: 2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
EVKL+ + RERE Y+N AEL+A++K + LEKAY++D ++ +EY C +L+ +K
Sbjct: 30 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 89
Query: 62 TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
++ + SI+ F +++DCP A+ R + P T++ + +A+ V
Sbjct: 90 QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRC------IADVVSL 142
Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
FIT MD L+L + A+D++ P L +L+ ++++++ LPPDFEG+ + W+ LS M A+DE
Sbjct: 143 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 202
Query: 181 LTEQQSRQLHFDLESSYNSF 200
L + Q RQ+ FDLES+YN+F
Sbjct: 203 LDDSQVRQMLFDLESAYNAF 222
>sp|A8XWB7|VPS28_CAEBR Vacuolar protein sorting-associated protein 28 homolog
OS=Caenorhabditis briggsae GN=vps-28 PE=3 SV=1
Length = 209
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 124/203 (61%), Gaps = 8/203 (3%)
Query: 2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
EV+L+ + ERE EN +EL+A++ A E LEK + RD +++ EY+TEC KLI +K ++
Sbjct: 10 EVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVTADEYKTECFKLIDQYK-VTM 68
Query: 62 TLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNF 121
L SIE FA Y++ CPAA+ R + G P TV+ V +A V+ F
Sbjct: 69 RLVHGATSIEEFAKKYRLHCPAAIER-IREGRPITVKDDQGNVLKH------IASIVEQF 121
Query: 122 ITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADEL 181
IT +DSL+LN AVD ++P+L DL ++N + +P D TK+K W RLS M A DE+
Sbjct: 122 ITFLDSLRLNTRAVDDLYPVLDDLYNAINSTSRVPIDANVTTKVKKWHDRLSSMAATDEI 181
Query: 182 TEQQSRQLHFDLESSYNSFMAAL 204
++ ++RQ+ FD E +Y SF AL
Sbjct: 182 SDDEARQMIFDTEGAYQSFQKAL 204
>sp|Q9NA26|VPS28_CAEEL Vacuolar protein sorting-associated protein 28 homolog
OS=Caenorhabditis elegans GN=vps-28 PE=1 SV=1
Length = 210
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 126/203 (62%), Gaps = 8/203 (3%)
Query: 2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
EV+L+ + ERE EN +EL+A++ A E LEK + RD +S+ EY++EC KLI +K ++
Sbjct: 11 EVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFKLIDQYK-VTM 69
Query: 62 TLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNF 121
L SIE FA Y++ CPAA+ R + G P TV+ V +A V+ F
Sbjct: 70 RLVHGATSIEDFAKKYRLHCPAAIER-IREGRPITVKDDQGNVLKH------IASIVEQF 122
Query: 122 ITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADEL 181
IT +D+L+LN AVD ++P L DL ++N + +P D TK+K W RLS M A+DE+
Sbjct: 123 ITFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAASDEI 182
Query: 182 TEQQSRQLHFDLESSYNSFMAAL 204
+++ +RQ+ FD+ES+Y +F AL
Sbjct: 183 SDEDARQMIFDVESAYQAFNKAL 205
>sp|Q02767|VPS28_YEAST Vacuolar protein sorting-associated protein 28 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS28 PE=1
SV=1
Length = 242
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 135/227 (59%), Gaps = 30/227 (13%)
Query: 2 EVKLWNDK---REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT 58
EV L+++ +++E+ E +E+Y+I+ + +EKAY++D I ++Y KL+ FK
Sbjct: 21 EVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 80
Query: 59 -LSSTLKDIV----PSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTT---- 109
L+S K+ + SIE F DTY + A+ RL G+P T EH A+++TT+
Sbjct: 81 YLNSQNKEEINKHFQSIEAFCDTYNITASNAITRL-ERGIPITAEH---AISTTTSAPSG 136
Query: 110 ------------SAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPP 157
+A VAE NFIT MD+LKLN A DQ+HPLL++LL S+N++T
Sbjct: 137 DNKQSSSSDKKFNAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RD 194
Query: 158 DFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL 204
DFE ++K+ DWI R++K+ D LTE Q R+L FDLE +Y SF A L
Sbjct: 195 DFENRSKLIDWIVRINKLSIGDTLTETQIRELLFDLELAYKSFYALL 241
>sp|O13872|VPS28_SCHPO Vacuolar protein sorting-associated protein 28 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps28 PE=3 SV=1
Length = 248
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 115/219 (52%), Gaps = 31/219 (14%)
Query: 10 REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS--TLKDIV 67
+ +++ E+ + LY+I+ A E+LEKA+ +D +S+S++ + C+ LI +++ S +
Sbjct: 23 KNQQVREDLSILYSILVALEQLEKAFTKDAVSTSDFNSTCELLIQQWESCFSDERVTQAF 82
Query: 68 PSIERFADTYKMDCPAALNRL----------------------------VTSGVPATVEH 99
S E F Y++ CP A+ R+ + P TV
Sbjct: 83 GSFEDFCSKYRLQCPRAIKRIQEGISDERSQSNSTFSNAISTTAEPSIAMNDTTPQTVNP 142
Query: 100 RAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLT-ILPPD 158
A + + A +A VQNFIT +D+++LN +A DQ+HPLLS+L+ S++ LT L
Sbjct: 143 TKAPSNPSASIAKSIAGLVQNFITTLDAIRLNFIAKDQLHPLLSELIVSMDDLTESLKIQ 202
Query: 159 FEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSY 197
+ K+ W+ +++ M D+L + + R+L +DLE +Y
Sbjct: 203 VSCRNKLVQWLIKINNMNITDQLNDVEKRELLYDLEQAY 241
>sp|P38889|SKN7_YEAST Transcription factor SKN7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKN7 PE=1 SV=1
Length = 622
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%)
Query: 8 DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIV 67
DK ++E+ + E YA +KL Y I S ++T + L+ +F TL STL +
Sbjct: 248 DKLQKELDMSKMESYATKVELQKLNSKYNTVIESLITFKTINENLLNNFNTLCSTLANNG 307
Query: 68 PSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNFIT 123
+ F D + N T+ + + A+ A++T S + QN +T
Sbjct: 308 IEVPIFGDNGNRNPTGNTNPATTTAIQSNNNTNNASPATSTVSLQLPNLPDQNSLT 363
>sp|P15600|NDUS3_PARTE NADH-ubiquinone oxidoreductase subunit 9 OS=Paramecium tetraurelia
GN=NAD9 PE=3 SV=1
Length = 209
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 167 DWISR-LSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAG 208
+W+ R +S+M L +++SR L D SS+N F+ P+ G
Sbjct: 144 NWLEREISEMFRGSNLLKKESRNLLLDYGSSFNPFLKKFPSTG 186
>sp|P15601|NDUS3_PARPR NADH-ubiquinone oxidoreductase subunit 9 OS=Paramecium primaurelia
GN=NAD9 PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 167 DWISR-LSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAG 208
+W+ R +S+M L ++ SR L D SS+N F+ P+ G
Sbjct: 144 NWLEREISEMFGVSYLLKKDSRNLLLDYGSSFNPFLKKFPSTG 186
>sp|Q93Y37|MNS3_ARATH Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 OS=Arabidopsis
thaliana GN=MNS3 PE=2 SV=1
Length = 624
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 27 ATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVP 68
A+ +LE Y+ I +Y TE K++AH KTL T + +VP
Sbjct: 295 ASVQLEFNYLSSISGDPKYSTEAMKVLAHIKTLPKT-EGLVP 335
>sp|P12369|KAP3_RAT cAMP-dependent protein kinase type II-beta regulatory subunit
OS=Rattus norvegicus GN=Prkar2b PE=1 SV=3
Length = 416
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 NDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
N+ ++R+MYE+F E +K+ E E+ V D+I + Y + +++IA + S
Sbjct: 257 NNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVY-NDGEQIIAQGDSADS 310
>sp|P31324|KAP3_MOUSE cAMP-dependent protein kinase type II-beta regulatory subunit
OS=Mus musculus GN=Prkar2b PE=1 SV=3
Length = 416
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 7 NDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAH 55
N+ ++R+MYE+F E +K+ E E+ V D+I + Y + +++IA
Sbjct: 257 NNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVY-NDGEQIIAQ 304
>sp|P31322|KAP3_BOVIN cAMP-dependent protein kinase type II-beta regulatory subunit
OS=Bos taurus GN=PRKAR2B PE=2 SV=2
Length = 418
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 7 NDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAH 55
N+ ++R+MYE+F E +K+ E E+ V D+I + Y + +++IA
Sbjct: 259 NNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVY-NDGEQIIAQ 306
>sp|P31323|KAP3_HUMAN cAMP-dependent protein kinase type II-beta regulatory subunit
OS=Homo sapiens GN=PRKAR2B PE=1 SV=3
Length = 418
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 NDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
N+ ++R+MYE+F E +K+ E E+ V D+I + Y + +++IA + S
Sbjct: 259 NNAKKRKMYESFIESLPFLKSLEFSERLKVVDVIGTKVY-NDGEQIIAQGDSADS 312
>sp|P07802|KAP0_PIG cAMP-dependent protein kinase type I-alpha regulatory subunit
OS=Sus scrofa GN=PRKAR1A PE=1 SV=2
Length = 380
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 14/66 (21%)
Query: 3 VKLW-NDK------------REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETEC 49
VKLW ND+ R+R+MYE F +I+++ +K E+ V D + ++E +
Sbjct: 220 VKLWGNDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFE-DG 278
Query: 50 QKLIAH 55
QK++
Sbjct: 279 QKIVVQ 284
>sp|Q9CMZ1|Y659_PASMU UPF0192 protein PM0659 OS=Pasteurella multocida (strain Pm70)
GN=PM0659 PE=3 SV=1
Length = 1905
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 24 IIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPA 83
+IKAT++L + +R I S YE Q+ + + ++ +++ I+P ++FA +
Sbjct: 1340 VIKATQELGSSTIRFIAS---YEDAQQQKVDAVRHVTLSVRPIMP--KQFATQIQK---V 1391
Query: 84 ALNRLVTSGVPATV--EHRAAAVASTTTSAAIVAECVQNFITAMDS 127
A + VTS +P T+ +HR + + A+ A+ V ++T D+
Sbjct: 1392 AAGKTVTSPLPMTLFPQHRQQSALFSAAPLAL-AQGVSTYLTHYDN 1436
>sp|P31111|ZIP1_YEAST Synaptonemal complex protein ZIP1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ZIP1 PE=1 SV=2
Length = 875
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 29 EKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSI 70
E L KAY +I+ S+EYE + L + TLSS I+ S+
Sbjct: 483 ENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSL 524
>sp|Q9ZCU7|NTRYL_RICPR Putative sensor histidine kinase NtrY-like OS=Rickettsia prowazekii
(strain Madrid E) GN=RP614 PE=3 SV=2
Length = 599
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 6 WNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKD 65
W+D ++ +E L I+ A+E+L K + +I SE+E+ + +I H ++ +K+
Sbjct: 372 WSDVAKKVAHEIKNPLTPILLASERLLKKFSSEINEKSEFESYLKMIIRH----TNDIKN 427
Query: 66 IVPSIERFA 74
IV FA
Sbjct: 428 IVSEFVLFA 436
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,654,748
Number of Sequences: 539616
Number of extensions: 2445731
Number of successful extensions: 8893
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 8847
Number of HSP's gapped (non-prelim): 52
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)