Query 028441
Match_columns 209
No_of_seqs 102 out of 153
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 19:11:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j9w_A VPS28, VPS28-PROV prote 100.0 5.4E-51 1.9E-55 315.2 9.0 100 106-205 2-101 (102)
2 2j9u_A VPS28, vacuolar protein 100.0 3.2E-49 1.1E-53 302.4 9.2 94 110-205 3-96 (96)
3 2caz_B Vacuolar protein sortin 100.0 5.3E-45 1.8E-49 298.7 11.0 103 1-104 28-138 (155)
4 2f6m_B Vacuolar protein sortin 100.0 1.6E-41 5.4E-46 265.0 9.2 91 1-92 11-109 (109)
5 2p22_B Vacuolar protein sortin 100.0 4.3E-41 1.5E-45 265.6 8.2 91 1-92 20-118 (118)
6 2f6m_A Suppressor protein STP2 89.2 1.2 3.9E-05 31.5 6.2 46 8-53 2-47 (65)
7 2p22_A Suppressor protein STP2 74.2 7.2 0.00025 32.1 6.3 47 7-53 110-156 (174)
8 3etw_A Adhesin A; antiparallel 65.8 13 0.00045 28.8 5.8 47 41-93 65-111 (119)
9 2d58_A Allograft inflammatory 57.2 33 0.0011 23.8 6.3 85 112-206 6-96 (107)
10 3ncv_A DNA mismatch repair pro 52.1 16 0.00054 30.5 4.5 61 138-198 133-193 (220)
11 2ve7_A Kinetochore protein HEC 46.2 1.1E+02 0.0039 26.5 9.3 94 108-202 41-160 (315)
12 1x9z_A DNA mismatch repair pro 42.3 54 0.0018 26.1 6.1 54 137-196 107-160 (188)
13 3ygs_P Procaspase 9; apoptosis 39.9 13 0.00046 26.9 1.9 26 182-207 52-81 (97)
14 1x3a_A Synapse associated prot 39.0 37 0.0013 25.2 4.3 63 17-79 10-82 (100)
15 3fxd_A Protein ICMQ; helix bun 37.9 22 0.00077 24.3 2.6 20 179-198 3-22 (57)
16 1wi9_A Protein C20ORF116 homol 36.4 37 0.0013 24.2 3.7 36 52-90 8-43 (72)
17 2p1h_A APAF-1, apoptotic prote 35.8 22 0.00076 25.0 2.5 27 180-206 49-79 (94)
18 3i5g_C Myosin catalytic light 30.6 40 0.0014 25.4 3.3 58 143-205 85-150 (159)
19 3kdg_A DNA mismatch repair pro 28.8 43 0.0015 27.0 3.4 32 165-196 137-168 (197)
20 1au7_A Protein PIT-1, GHF-1; c 27.2 47 0.0016 25.7 3.2 66 69-153 4-74 (146)
21 2lpe_A Kinase suppressor of RA 25.5 17 0.00057 29.4 0.3 57 137-193 56-127 (149)
22 3i5g_B Myosin regulatory light 25.2 38 0.0013 25.4 2.3 59 143-206 85-148 (153)
23 2lv7_A Calcium-binding protein 23.5 1.2E+02 0.0041 21.3 4.6 57 143-204 36-98 (100)
24 2lhi_A Calmodulin, serine/thre 22.7 81 0.0028 24.0 3.8 59 143-206 84-147 (176)
25 1wlz_A DJBP, CAP-binding prote 22.6 82 0.0028 21.2 3.5 58 143-205 24-87 (105)
26 3qrx_A Centrin; calcium-bindin 21.9 1.1E+02 0.0037 21.9 4.3 61 143-208 101-167 (169)
27 2kz2_A Calmodulin, CAM; TR2C, 21.2 1.7E+02 0.0057 19.7 4.9 56 145-205 31-92 (94)
28 2obh_A Centrin-2; DNA repair c 20.7 1.6E+02 0.0053 20.9 4.9 58 143-205 79-142 (143)
29 2jjz_A Ionized calcium-binding 20.7 2.5E+02 0.0086 20.4 6.9 65 136-205 43-113 (150)
30 1y79_1 Peptidyl-dipeptidase DC 20.6 5.5E+02 0.019 24.4 11.8 41 38-78 20-62 (680)
No 1
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=100.00 E-value=5.4e-51 Score=315.18 Aligned_cols=100 Identities=43% Similarity=0.766 Sum_probs=97.7
Q ss_pred CCCcchhHHHHhhhhhhhHhhhhccccchhhhhcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHH
Q 028441 106 STTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQ 185 (209)
Q Consensus 106 ~~~~~a~~Iae~t~~FIT~MDaLKLn~~a~DqLhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq 185 (209)
++++++|+|||+||||||+||+|||||+|||||||+|+||+.|+||++.+|+||+||.||++|+++||+|+|+|||+|+|
T Consensus 2 ~~~~~~~~IAe~v~~FIT~mDaLKLn~~a~DqLhPlL~dL~~sl~r~~~lp~dfegk~kv~~Wl~~Ln~M~AsdeL~e~q 81 (102)
T 2j9w_A 2 HMGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSMSASDELDDSQ 81 (102)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHHTSCTTCBCCHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhcchhHHhhhhHHHHHHHhcccCCCCCCCCccHHHHHHHHHHHcCCcccccCCHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHhhcC
Q 028441 186 SRQLHFDLESSYNSFMAALP 205 (209)
Q Consensus 186 ~RqllfDle~aY~~F~~~L~ 205 (209)
+|||+||||+||++|+++|+
T Consensus 82 ~RqllfDle~aY~~F~~~L~ 101 (102)
T 2j9w_A 82 VRQMLFDLESAYNAFNRFLH 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999997
No 2
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=100.00 E-value=3.2e-49 Score=302.43 Aligned_cols=94 Identities=54% Similarity=0.811 Sum_probs=91.8
Q ss_pred chhHHHHhhhhhhhHhhhhccccchhhhhcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHH
Q 028441 110 SAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQL 189 (209)
Q Consensus 110 ~a~~Iae~t~~FIT~MDaLKLn~~a~DqLhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~Rql 189 (209)
+||+|||+||||||+||+|||||+|||||||+|+||+.|+||++ |+||+||.||++|+++||+|+|+|||+|+|+|||
T Consensus 3 ~~~~iAe~~~~FIT~mDaLKL~~~a~DqLhP~L~dL~~sl~r~~--~~dfegk~kv~~Wl~~Ln~M~AsdeL~e~q~Rql 80 (96)
T 2j9u_A 3 NAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKLSIGDTLTETQIREL 80 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHC--CCCCTTHHHHHHHHHHHHTSCTTCBCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcchhHHhhCchHHHHHHHccCCC--CCCCchHHHHHHHHHHHcCCcccccCCHHHHHHH
Confidence 58999999999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhhcC
Q 028441 190 HFDLESSYNSFMAALP 205 (209)
Q Consensus 190 lfDle~aY~~F~~~L~ 205 (209)
+||||+||++|+++|+
T Consensus 81 lfDle~aY~~F~~~L~ 96 (96)
T 2j9u_A 81 LFDLELAYKSFYALLD 96 (96)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999985
No 3
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=100.00 E-value=5.3e-45 Score=298.69 Aligned_cols=103 Identities=33% Similarity=0.646 Sum_probs=90.9
Q ss_pred CcccccC---ChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH-----HHhcccCCHHH
Q 028441 1 MEVKLWN---DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS-----TLKDIVPSIER 72 (209)
Q Consensus 1 ~EV~L~~---~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl~Qyk~~~~-----~v~~~~~~l~~ 72 (209)
+||+||+ |++||++||+||||||||+|||+||||||||+|+++|||++|+|||+|||++++ .|.+.||||++
T Consensus 28 eEVkL~~~~~s~~ERe~yE~LAeLYSII~tLE~LEKAYikD~It~~eYT~aC~rLL~QYKt~~~~~~~~~v~~~~~dle~ 107 (155)
T 2caz_B 28 DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEA 107 (155)
T ss_dssp ---CCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHTCSHHH
T ss_pred ceeehhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHCCCHHH
Confidence 6999999 999999999999999999999999999999999999999999999999999999 78888999999
Q ss_pred HHHHhcCCchHHhhhhhhcCCCceeecccccc
Q 028441 73 FADTYKMDCPAALNRLVTSGVPATVEHRAAAV 104 (209)
Q Consensus 73 F~~~y~l~cp~A~~RL~~~G~PaTveh~~~~~ 104 (209)
|+++|+|+||+|++|| ++|+|+||+|+++..
T Consensus 108 F~~~Y~l~CP~A~~RL-~~GvPaTve~~~~~~ 138 (155)
T 2caz_B 108 FCDTYNITASNAITRL-ERGIPITAEHAISTT 138 (155)
T ss_dssp HHHHTTCCCTTHHHHH-HSCCSCC--------
T ss_pred HHHHhCCcChHHHHHH-hcCCCchhccCCCCC
Confidence 9999999999999999 999999999987654
No 4
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=100.00 E-value=1.6e-41 Score=265.03 Aligned_cols=91 Identities=34% Similarity=0.656 Sum_probs=89.0
Q ss_pred CcccccC---ChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH-----HHhcccCCHHH
Q 028441 1 MEVKLWN---DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS-----TLKDIVPSIER 72 (209)
Q Consensus 1 ~EV~L~~---~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl~Qyk~~~~-----~v~~~~~~l~~ 72 (209)
+||+||+ |++||++||+||+|||||+|||+||||||||+|+++|||++|+|||+|||++++ .|++.||||++
T Consensus 11 ~EV~L~~~~~~~~eRe~ye~LAelYSII~tle~LEkAyikD~It~~eYt~~c~rLL~QyKt~~~~~~~~~v~~~~~~le~ 90 (109)
T 2f6m_B 11 DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEA 90 (109)
T ss_dssp SCCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCTTTTHHHHHHHHHHH
T ss_pred hhhhhhhccCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccHHHHHHHCCCHHH
Confidence 6999999 999999999999999999999999999999999999999999999999999999 78888999999
Q ss_pred HHHHhcCCchHHhhhhhhcC
Q 028441 73 FADTYKMDCPAALNRLVTSG 92 (209)
Q Consensus 73 F~~~y~l~cp~A~~RL~~~G 92 (209)
|+++|+|+||+|++|| ++|
T Consensus 91 F~~~y~l~cp~A~~RL-~~G 109 (109)
T 2f6m_B 91 FADTYNITASNAITRL-ERG 109 (109)
T ss_dssp HHHHTTCCCHHHHHHH-HHC
T ss_pred HHHHhCCCChHHHHHH-hCC
Confidence 9999999999999999 987
No 5
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-41 Score=265.60 Aligned_cols=91 Identities=34% Similarity=0.656 Sum_probs=69.7
Q ss_pred CcccccC---ChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH-----HHhcccCCHHH
Q 028441 1 MEVKLWN---DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS-----TLKDIVPSIER 72 (209)
Q Consensus 1 ~EV~L~~---~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl~Qyk~~~~-----~v~~~~~~l~~ 72 (209)
+||+||+ |++||++||+||+|||||+|||+||||||||+|+++|||++|+|||+|||++++ .|++.||||++
T Consensus 20 ~EV~L~~~~~~~~eRe~ye~LAeLYSII~tle~LEKAyikD~It~~eYt~~C~rLL~QYKt~~~~~~~~~v~~~~~dle~ 99 (118)
T 2p22_B 20 DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEA 99 (118)
T ss_dssp SCCCSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHTTTTTC----------
T ss_pred chhhhhcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccHHHHHHHCCCHHH
Confidence 6999999 999999999999999999999999999999999999999999999999999999 78788999999
Q ss_pred HHHHhcCCchHHhhhhhhcC
Q 028441 73 FADTYKMDCPAALNRLVTSG 92 (209)
Q Consensus 73 F~~~y~l~cp~A~~RL~~~G 92 (209)
|+++|+|+||+|++|| ++|
T Consensus 100 F~~~y~l~cP~A~~RL-~~G 118 (118)
T 2p22_B 100 FADTYNITASNAITRL-ERG 118 (118)
T ss_dssp ---------CCHHHHH-TC-
T ss_pred HHHHhCCCChHHHHHH-hCC
Confidence 9999999999999999 887
No 6
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=89.21 E-value=1.2 Score=31.46 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=42.5
Q ss_pred ChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 028441 8 DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLI 53 (209)
Q Consensus 8 ~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl 53 (209)
+|..++.||-.|+=.+|==|+.+|.+|.-++.|+-+.|-.....|-
T Consensus 2 ~pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 2 TDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELA 47 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999998876664
No 7
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=74.16 E-value=7.2 Score=32.11 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=42.3
Q ss_pred CChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 028441 7 NDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLI 53 (209)
Q Consensus 7 ~~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl 53 (209)
.++-.+..|+-.|+-.+|==|+.+|.+|+-++.|+-+.|-..+..|-
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~La 156 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELA 156 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46677999999999999999999999999999999999998876554
No 8
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=65.77 E-value=13 Score=28.83 Aligned_cols=47 Identities=13% Similarity=0.300 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHhcCCchHHhhhhhhcCC
Q 028441 41 SSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGV 93 (209)
Q Consensus 41 ~~~eYt~~c~rLl~Qyk~~~~~v~~~~~~l~~F~~~y~l~cp~A~~RL~~~G~ 93 (209)
..+-|-.+-..|+.||+..++.|.+....-+.=.+.|. .++|| +.|=
T Consensus 65 ~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE-----~ik~l-r~gn 111 (119)
T 3etw_A 65 NTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFE-----KIQAL-RAGN 111 (119)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HcCC
Confidence 44557888899999999999988766666555566665 78888 8774
No 9
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=57.22 E-value=33 Score=23.75 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=56.9
Q ss_pred hHHHHhhhhhhhHhhhhccccchhhhhcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHH
Q 028441 112 AIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHF 191 (209)
Q Consensus 112 ~~Iae~t~~FIT~MDaLKLn~~a~DqLhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~Rqllf 191 (209)
+.+.++-..|++.. .+....+|...+.++......+..-...+-....+..++..+ +..++++++++++.
T Consensus 6 ~~l~~~~~ef~~~~-----~~~~~~~l~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-----g~~~~~~~~~~l~~ 75 (107)
T 2d58_A 6 ERLDEINKQFLDDP-----KYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKL-----GVPKTHLELKKLIG 75 (107)
T ss_dssp HHHHHHHHHHHTCG-----GGTTCTTHHHHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHT-----TCCCCHHHHHHHHH
T ss_pred HHHhHHHHHhhccH-----HHHHHHhhHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHH
Confidence 56777788888754 233445554556666666776765333455567777777765 25689999999987
Q ss_pred hHH------HHHHHHHhhcCC
Q 028441 192 DLE------SSYNSFMAALPN 206 (209)
Q Consensus 192 Dle------~aY~~F~~~L~~ 206 (209)
.+| -.|.+|...+..
T Consensus 76 ~~D~d~dg~i~~~eF~~~~~~ 96 (107)
T 2d58_A 76 EVSSGSGETFSYPDFLRMMLG 96 (107)
T ss_dssp HHCSSSSSEECHHHHHHHHSS
T ss_pred HhCCCCCCeEcHHHHHHHHHH
Confidence 765 258888877653
No 10
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=52.09 E-value=16 Score=30.47 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=34.9
Q ss_pred hcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHHHHHH
Q 028441 138 VHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYN 198 (209)
Q Consensus 138 LhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle~aY~ 198 (209)
+..++.||+..+..-.......+-..++..|+.-=...++++.||.+|+++|+-||...-+
T Consensus 133 ~~~ll~~ll~~l~~~~~~~~~~~~~~~~~as~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~ 193 (220)
T 3ncv_A 133 VVSLARDVLGELAQVGSSQTIASHENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPR 193 (220)
T ss_dssp HHHHHHHHHHHHTTCC-----CTTHHHHHHHHTTCSSSCSSCCCCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3445556665554322100111122344444443347889999999999999999986533
No 11
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=46.25 E-value=1.1e+02 Score=26.55 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=59.1
Q ss_pred CcchhHHHHhhhhhhhHhhh-hccc-cchhhhhcchHHHHH-------HhcccCCCCCCCCcchhhHHHHHHHHhcCCcc
Q 028441 108 TTSAAIVAECVQNFITAMDS-LKLN-MVAVDQVHPLLSDLL-------GSLNKLTILPPDFEGKTKMKDWISRLSKMGAA 178 (209)
Q Consensus 108 ~~~a~~Iae~t~~FIT~MDa-LKLn-~~a~DqLhPlL~dL~-------~slnk~~~lp~dFegk~kl~~Wl~kLn~M~as 178 (209)
..+.|-...+.++.+-.+|- .+++ -+-.|++.++|..|= .+|.-+. .|..|..---+..||+.|-.|...
T Consensus 41 ~Pt~KdF~~if~fL~~~idp~~~~~~~k~eeev~~~lK~L~YP~~isKS~L~a~g-~pHsWp~~Lg~L~WLvel~~~~~~ 119 (315)
T 2ve7_A 41 APSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVG-APHTWPHIVAALVWLIDCIKIHTA 119 (315)
T ss_dssp SCCHHHHHHHHHHHHTTTSTTCCCCSSCHHHHHHHHHHHTTCSSCCCHHHHHTTT-STTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCCceeCHHHhcCCC-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888877873 3553 466788888877662 2222333 366787777778899988765311
Q ss_pred ----c-CCC-----------HHHHHHHHHh-HHHHHHHHHh
Q 028441 179 ----D-ELT-----------EQQSRQLHFD-LESSYNSFMA 202 (209)
Q Consensus 179 ----d-eL~-----------eeq~RqllfD-le~aY~~F~~ 202 (209)
+ .++ +.+...+.|| +..+|..|..
T Consensus 120 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~y~~~~Y~~fl~ 160 (315)
T 2ve7_A 120 MKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMS 160 (315)
T ss_dssp HHHCC---------CCBCTTSCBSHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhcccccccccchHHHHHHHHHHHHHHHHHh
Confidence 1 111 1134556666 6788888875
No 12
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=42.32 E-value=54 Score=26.08 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=39.3
Q ss_pred hhcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHHHH
Q 028441 137 QVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESS 196 (209)
Q Consensus 137 qLhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle~a 196 (209)
++.-++.||+..+.. .. . ....++..|+..=. .++++.|+.+|+++|+-+|+..
T Consensus 107 ~~~~li~~ll~~l~~-~~--~--~~~~~~~~~~AC~~-ik~g~~Ls~~em~~Ll~~L~~~ 160 (188)
T 1x9z_A 107 NLQILIPELIGYLAK-QS--V--FEPGNIAQWIARNL-MSEHAQWSMAQAITLLADVERL 160 (188)
T ss_dssp CHHHHHHHHHHHHTT-CS--S--CCHHHHHHHHHHTT-SCCCCSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CC--c--chHHHHHHHHHHhh-CccCCCCCHHHHHHHHHHHHhH
Confidence 344566777766644 21 1 12367888888766 8999999999999999999874
No 13
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.90 E-value=13 Score=26.89 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=22.1
Q ss_pred CHHHHHHHHHhH----HHHHHHHHhhcCCC
Q 028441 182 TEQQSRQLHFDL----ESSYNSFMAALPNA 207 (209)
Q Consensus 182 ~eeq~RqllfDl----e~aY~~F~~~L~~~ 207 (209)
..+++|+|+-.| +.||..|+..|...
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et 81 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDT 81 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHc
Confidence 458999999998 58999999999753
No 14
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=39.01 E-value=37 Score=25.16 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCC-------ChhhHHHHHHHHHHHHHHHHHHHhcccCC---HHHHHHHhcC
Q 028441 17 NFAELYAIIKATEKLEKAYVRDII-------SSSEYETECQKLIAHFKTLSSTLKDIVPS---IERFADTYKM 79 (209)
Q Consensus 17 ~lAelYSII~tle~LEkAyirD~I-------~~~eYt~~c~rLl~Qyk~~~~~v~~~~~~---l~~F~~~y~l 79 (209)
+-.++-+-|.+|..=++-|++|.- +-++++.....||..+..+.+.-..-+|. =+.|+++|=-
T Consensus 10 ~~~~~ka~i~~L~~D~~tfl~dP~~~~~f~Fd~d~~~~~i~~lL~~dp~L~~l~~~LVP~~v~e~~FW~rYFy 82 (100)
T 1x3a_A 10 DEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFY 82 (100)
T ss_dssp TTHHHHHHHHHHHTCSHHHHCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHTTTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcChHhhccCCCCcccccccHHHHHHHHHHHHHhCHHHHHHHHHHCCCCcCHHHHHHHHHH
Confidence 345677778888888899999843 33448899999999999877754555664 5899999853
No 15
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=37.86 E-value=22 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.3
Q ss_pred cCCCHHHHHHHHHhHHHHHH
Q 028441 179 DELTEQQSRQLHFDLESSYN 198 (209)
Q Consensus 179 deL~eeq~RqllfDle~aY~ 198 (209)
|+|+++|+...|-=||-|-.
T Consensus 3 d~lt~eq~~aILkaLdeaIe 22 (57)
T 3fxd_A 3 DQLSDEQKETILKALNDAIE 22 (57)
T ss_dssp -CCCHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 89999999999999998864
No 16
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=36.38 E-value=37 Score=24.18 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcccCCHHHHHHHhcCCchHHhhhhhh
Q 028441 52 LIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVT 90 (209)
Q Consensus 52 Ll~Qyk~~~~~v~~~~~~l~~F~~~y~l~cp~A~~RL~~ 90 (209)
||.+|-...+ ...+..|++...+|+|.-+.+++|| +
T Consensus 8 ll~~Fi~yIk--~~Kvv~LedLA~~F~l~t~~~i~RI-~ 43 (72)
T 1wi9_A 8 FLTEFINYIK--KSKVVLLEDLAFQMGLRTQDAINRI-Q 43 (72)
T ss_dssp HHHHHHHHHH--HCSEECHHHHHHHHCSCHHHHHHHH-H
T ss_pred HHHHHHHHHH--HcCeeeHHHHHHHhCCChHHHHHHH-H
Confidence 5666655544 3456789999999999999999999 5
No 17
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.78 E-value=22 Score=25.03 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHhH----HHHHHHHHhhcCC
Q 028441 180 ELTEQQSRQLHFDL----ESSYNSFMAALPN 206 (209)
Q Consensus 180 eL~eeq~RqllfDl----e~aY~~F~~~L~~ 206 (209)
.=..+++|+|+-.| +.||..|...|..
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~ 79 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLH 79 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 34568999999888 7899999999964
No 18
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=30.59 E-value=40 Score=25.40 Aligned_cols=58 Identities=10% Similarity=0.260 Sum_probs=41.0
Q ss_pred HHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHH--------HHHHHHHhhcC
Q 028441 143 SDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLE--------SSYNSFMAALP 205 (209)
Q Consensus 143 ~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle--------~aY~~F~~~L~ 205 (209)
.+|..+...+..-...+=....|++.+..+ +..|+++++++|+--.+ -.|.+|.+.+-
T Consensus 85 ~~l~~aF~~fD~d~~G~I~~~el~~~l~~~-----g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~ 150 (159)
T 3i5g_C 85 DEFMEAFKTFDREGQGLISSAEIRNVLKML-----GERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVM 150 (159)
T ss_dssp HHHHHHHHHHCTTSSSEECHHHHHHHHHHS-----SSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHH
Confidence 456677777765334466677788877665 36899999999986443 26999987664
No 19
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=28.76 E-value=43 Score=26.97 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCcccCCCHHHHHHHHHhHHHH
Q 028441 165 MKDWISRLSKMGAADELTEQQSRQLHFDLESS 196 (209)
Q Consensus 165 l~~Wl~kLn~M~asdeL~eeq~RqllfDle~a 196 (209)
+..|+.-=...++++.||.+|+++|+-+|...
T Consensus 137 ~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~ 168 (197)
T 3kdg_A 137 AAIMMSCKGSIKANRHLRNDEIKALLDDLRST 168 (197)
T ss_dssp HHHHHHHCC----CCCCCHHHHHHHHHHHHHS
T ss_pred HHHHHhhHhhccCCCCCCHHHHHHHHHHHHcC
Confidence 44455544578899999999999999999864
No 20
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=27.15 E-value=47 Score=25.67 Aligned_cols=66 Identities=24% Similarity=0.411 Sum_probs=45.5
Q ss_pred CHHHHHHHhcCCchHHhhhhhhcCCCceeecccccccCCCcchhHHH-----HhhhhhhhHhhhhccccchhhhhcchHH
Q 028441 69 SIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVA-----ECVQNFITAMDSLKLNMVAVDQVHPLLS 143 (209)
Q Consensus 69 ~l~~F~~~y~l~cp~A~~RL~~~G~PaTveh~~~~~~~~~~~a~~Ia-----e~t~~FIT~MDaLKLn~~a~DqLhPlL~ 143 (209)
++++|.+.|. ..|| .-|++-+- -|.+.. ...|.-|.-..++-|.....-.|.|+|.
T Consensus 4 ~l~~fa~~~k------~~ri-~lg~tQ~~------------vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~ 64 (146)
T 1au7_A 4 ALEQFANEFK------VRRI-KLGYTQTN------------VGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILS 64 (146)
T ss_dssp HHHHHHHHHH------HHHH-HHTCCHHH------------HHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHH-hccCcHHh------------hhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHH
Confidence 5788999886 5788 88887321 111111 1255667778899999999999999999
Q ss_pred HHHHhcccCC
Q 028441 144 DLLGSLNKLT 153 (209)
Q Consensus 144 dL~~slnk~~ 153 (209)
.-+..-....
T Consensus 65 ~wl~e~e~~~ 74 (146)
T 1au7_A 65 KWLEEAEQVG 74 (146)
T ss_dssp HHHHHCCC--
T ss_pred HHHHHhhccc
Confidence 8777766544
No 21
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=25.49 E-value=17 Score=29.38 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=40.0
Q ss_pred hhcchHHHHHHhcccCCC--CCCCCcchhhHHHHHHHHh-------------cCCcccCCCHHHHHHHHHhH
Q 028441 137 QVHPLLSDLLGSLNKLTI--LPPDFEGKTKMKDWISRLS-------------KMGAADELTEQQSRQLHFDL 193 (209)
Q Consensus 137 qLhPlL~dL~~slnk~~~--lp~dFegk~kl~~Wl~kLn-------------~M~asdeL~eeq~RqllfDl 193 (209)
.|--+.+..+..-.||+. =|+.+.+-.++.+||..+| .+.+-=|+||+|.|+++-+.
T Consensus 56 KLvkyfSkqL~~K~kv~~~~r~~~l~~yP~l~~WLrvVgl~~esiq~i~~~~TLe~LLemsd~evr~~L~~~ 127 (149)
T 2lpe_A 56 KLVKYICKQQQSKLSVTPSDRTAELNSYPRFSDWLYIFNVRPEVVQEIPQELTLDALLEMDEAKAKEMLRRW 127 (149)
T ss_dssp HHHHHHGGGTTGGGTSCTTTSCTTGGGCSCSTTTHHHHTCCHHHHTTSCTTCSHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCccccchhhhcCchHHHHHHHhccCHHHHHHhhhhccHHHHHhcCHHHHHHHHHHc
Confidence 344556666666667774 1456667779999998776 34444578999999999664
No 22
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=25.19 E-value=38 Score=25.36 Aligned_cols=59 Identities=14% Similarity=0.243 Sum_probs=42.3
Q ss_pred HHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHHH-----HHHHHHhhcCC
Q 028441 143 SDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLES-----SYNSFMAALPN 206 (209)
Q Consensus 143 ~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle~-----aY~~F~~~L~~ 206 (209)
.+|..+...+..-...+=.+..|+.++..+ ++.||++++.+|+-..|. .|.+|.+.+.+
T Consensus 85 ~~l~~aF~~fD~d~~G~I~~~el~~~l~~~-----g~~ls~~ei~~~~~~~D~~dG~I~y~EF~~~m~~ 148 (153)
T 3i5g_B 85 DALRNAFSMFDEDGQGFIPEDYLKDLLENM-----GDNFSKEEIKNVWKDAPLKNKQFNYNKMVDIKGK 148 (153)
T ss_dssp HHHHHHHHTTCSSCSSCCCHHHHHHHHHSS-----SSCCCHHHHHHHHTTCCEETTEECHHHHHHHHHC
T ss_pred HHHHHHHhccccCCCCeEeHHHHHHHHHHc-----CCcCCHHHHHHHHHHhCCCcCEEcHHHHHHHhcC
Confidence 456677777765344566777788877543 378999999999976553 68889887754
No 23
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=23.45 E-value=1.2e+02 Score=21.27 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=36.1
Q ss_pred HHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHHH------HHHHHHhhc
Q 028441 143 SDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLES------SYNSFMAAL 204 (209)
Q Consensus 143 ~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle~------aY~~F~~~L 204 (209)
.+|-...+.+..-...+=....++.++..+. ..++++++++++-.+|. .|.+|.+.+
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg-----~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m 98 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLG-----YMPNEVELEVIIQRLDMDGDGQVDFEEFVTLL 98 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHT-----CCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHh
Confidence 4455555666543334556677777777662 45788888888766543 477777655
No 24
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.67 E-value=81 Score=24.00 Aligned_cols=59 Identities=14% Similarity=0.272 Sum_probs=42.0
Q ss_pred HHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHH-----HHHHHHHhhcCC
Q 028441 143 SDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLE-----SSYNSFMAALPN 206 (209)
Q Consensus 143 ~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle-----~aY~~F~~~L~~ 206 (209)
.+|..+...+..-...+=.+..|++++..+ .+.++++++++|+-..+ -.|.+|.+.+.+
T Consensus 84 ~~l~~aF~~fD~d~~G~I~~~el~~~l~~~-----g~~~~~~ei~~l~~~~dd~dG~I~~~EF~~~m~k 147 (176)
T 2lhi_A 84 QELLEAFKVFDKNGDGLISAAELKHVLTSI-----GEKLTDAEVDDMLREVSDGSGEINIQQFAALLSK 147 (176)
T ss_dssp HHHHHHHHHHCSSCSSSBCHHHHHHHHHTT-----TCCCCHHHHHHHHHHHHTTSSCBCTTHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-----CcccchHHHHHHHHhhcCCCCeEeHHHHHHHHHh
Confidence 345666666654334566778888887654 36899999999987665 368899888853
No 25
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=22.63 E-value=82 Score=21.23 Aligned_cols=58 Identities=12% Similarity=0.266 Sum_probs=37.5
Q ss_pred HHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHH------HHHHHHHhhcC
Q 028441 143 SDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLE------SSYNSFMAALP 205 (209)
Q Consensus 143 ~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle------~aY~~F~~~L~ 205 (209)
.+|......+..-...+-....+..++..+. ..++++++++++-.++ -.|.+|...+.
T Consensus 24 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-----~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~~ 87 (105)
T 1wlz_A 24 HAITQEFENFDTMKTNTISREEFRAICNRRV-----QILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFS 87 (105)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHHHT-----CCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHHh
Confidence 3444455555543344556677778887762 4588899999886554 35888887765
No 26
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=21.94 E-value=1.1e+02 Score=21.93 Aligned_cols=61 Identities=10% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHHH------HHHHHHhhcCCCC
Q 028441 143 SDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLES------SYNSFMAALPNAG 208 (209)
Q Consensus 143 ~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle~------aY~~F~~~L~~~~ 208 (209)
..+......+..-...+=.+..+..++..+ ...++++++.+++-.+|. .|.+|.+.+.+.+
T Consensus 101 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~-----g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~ 167 (169)
T 3qrx_A 101 EEILKAFRLFDDDNSGTITIKDLRRVAKEL-----GENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTS 167 (169)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHHHHT-----TCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC---
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHhcc
Confidence 344445555554223344556666666554 368999999999887753 5999998887654
No 27
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=21.20 E-value=1.7e+02 Score=19.72 Aligned_cols=56 Identities=9% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHHH------HHHHHHhhcC
Q 028441 145 LLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLES------SYNSFMAALP 205 (209)
Q Consensus 145 L~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle~------aY~~F~~~L~ 205 (209)
+......+..-...+-....+..|+..+. ..++++++++++-.+|. .|.+|...+.
T Consensus 31 l~~~F~~~D~d~~G~I~~~El~~~l~~~g-----~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 92 (94)
T 2kz2_A 31 IREAFRVEDKDGNGYISAAELRHVMTNLG-----EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 92 (94)
T ss_dssp HHHHHHHHCTTCCSCBCHHHHHHHHHHHT-----CCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHCCCCcCcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 33344444432234556677888887763 45888999998876653 4778876654
No 28
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=20.75 E-value=1.6e+02 Score=20.87 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHHH------HHHHHHhhcC
Q 028441 143 SDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLES------SYNSFMAALP 205 (209)
Q Consensus 143 ~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle~------aY~~F~~~L~ 205 (209)
.++......+..-...+-....++.|+..+ +..++++++++++-.+|. .|.+|.+.+.
T Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-----g~~~~~~~~~~~~~~~D~d~dG~I~~~eF~~~~~ 142 (143)
T 2obh_A 79 EEILKAFKLFDDDETGKISFKNLKRVAKEL-----GENLTDEELQEMIDEADRDGDGEVSEQEFLRIMK 142 (143)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHHHHT-----TCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence 345556666654233455677788888765 356999999999876653 4788876553
No 29
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=20.71 E-value=2.5e+02 Score=20.44 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=44.2
Q ss_pred hhhcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHHH------HHHHHHhhcC
Q 028441 136 DQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLES------SYNSFMAALP 205 (209)
Q Consensus 136 DqLhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle~------aY~~F~~~L~ 205 (209)
..+..-..++......+..-...+-.+..+..++..+ ...++++++++++-.+|. .|.+|...+.
T Consensus 43 ~~l~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-----g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~~~~ 113 (150)
T 2jjz_A 43 ENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKL-----GVPKTHLEMKKMISEVTGGVSDTISYRDFVNMML 113 (150)
T ss_dssp TTHHHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHT-----TCCCCHHHHHHHHHHHHTTSCSSBCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHc-----CCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3345556677777777765333455667777777765 256889999999877763 6788876653
No 30
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli}
Probab=20.64 E-value=5.5e+02 Score=24.38 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=32.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHhc
Q 028441 38 DIISSSEYETECQKLIAHFKTLSSTLKD--IVPSIERFADTYK 78 (209)
Q Consensus 38 D~I~~~eYt~~c~rLl~Qyk~~~~~v~~--~~~~l~~F~~~y~ 78 (209)
+.|++++|.+++.++|.+.+..+..+.. ..++++..+..+.
T Consensus 20 ~~i~~~~~~~a~~~~~~~~~~~i~~i~~~~~~~t~~n~i~~le 62 (680)
T 1y79_1 20 DQIANHHYRPAFDEGMQQKRAEIAAIALNPQMPDFNNTILALE 62 (680)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHHHHHTTSSSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 5689999999999999999999987743 2456777665543
Done!