BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028445
         (209 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UYQ|A Chain A, Hca 3
          Length = 260

 Score = 30.4 bits (67), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 100 SGAKTRAIFDDVFDKMVAAAQPIPGFRRVK 129
           +G   R +FDD +D+ +    P+PG  R++
Sbjct: 62  NGHTCRVVFDDTYDRSMLRGGPLPGPYRLR 91


>pdb|1Z97|A Chain A, Human Carbonic Anhydrase Iii: Structural And Kinetic Study
           Of Catalysis And Proton Transfer
          Length = 266

 Score = 30.4 bits (67), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 100 SGAKTRAIFDDVFDKMVAAAQPIPGFRRVK 129
           +G   R +FDD +D+ +    P+PG  R++
Sbjct: 62  NGKTCRVVFDDTYDRSMLRGGPLPGPYRLR 91


>pdb|1Z93|A Chain A, Human Carbonic Anhydrase Iii:structural And Kinetic Study
           Of Catalysis And Proton Transfer
          Length = 266

 Score = 30.0 bits (66), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 100 SGAKTRAIFDDVFDKMVAAAQPIPGFRRVK 129
           +G   R +FDD +D+ +    P+PG  R++
Sbjct: 62  NGKTCRVVFDDTYDRSMLRGGPLPGPYRLR 91


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,629,203
Number of Sequences: 62578
Number of extensions: 216970
Number of successful extensions: 643
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 7
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)