Query 028445
Match_columns 209
No_of_seqs 139 out of 1040
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 11:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05697 Trigger_N: Bacterial 99.9 3.8E-26 8.2E-31 183.6 14.1 114 80-208 1-114 (145)
2 COG0544 Tig FKBP-type peptidyl 99.9 2.1E-23 4.5E-28 196.1 14.9 114 80-208 1-114 (441)
3 PRK01490 tig trigger factor; P 99.9 6.8E-23 1.5E-27 189.9 14.5 114 80-208 1-114 (435)
4 TIGR00115 tig trigger factor. 99.9 6E-21 1.3E-25 175.4 12.8 102 93-208 1-102 (408)
5 PHA00440 host protein H-NS-int 76.8 33 0.00071 26.9 8.9 62 102-171 19-82 (98)
6 PF11247 DUF2675: Protein of u 73.8 41 0.00089 26.3 8.9 69 94-171 12-82 (98)
7 KOG0884 Similar to cyclophilin 52.1 41 0.00088 27.8 5.4 53 80-132 1-64 (161)
8 PF06857 ACP: Malonate decarbo 45.7 91 0.002 23.6 6.1 46 78-125 14-60 (87)
9 COG5435 Uncharacterized conser 31.1 1.3E+02 0.0029 25.1 5.4 61 69-132 9-75 (147)
10 cd04911 ACT_AKiii-YclM-BS_1 AC 30.9 46 0.00099 24.6 2.4 43 76-119 24-67 (76)
11 PRK13848 conjugal transfer pro 30.6 49 0.0011 25.8 2.6 19 96-114 41-59 (98)
12 PRK13253 citrate lyase subunit 29.3 2.5E+02 0.0055 21.5 6.3 45 79-125 16-61 (92)
13 PRK12907 secY preprotein trans 28.1 58 0.0013 31.3 3.2 19 121-145 347-365 (434)
14 KOG2193 IGF-II mRNA-binding pr 27.8 56 0.0012 32.1 3.0 83 51-134 410-515 (584)
15 PF00344 SecY: SecY translocas 27.4 46 0.00099 30.5 2.3 30 112-147 271-300 (346)
16 COG0199 RpsN Ribosomal protein 27.1 38 0.00082 24.3 1.3 19 109-128 41-59 (61)
17 PRK02103 malonate decarboxylas 25.9 2.2E+02 0.0047 22.5 5.5 47 79-127 30-77 (105)
18 PF11000 DUF2840: Protein of u 25.2 94 0.002 26.0 3.5 46 118-179 71-117 (149)
19 TIGR02920 acc_sec_Y2 accessory 24.8 75 0.0016 30.0 3.3 21 121-147 312-332 (395)
20 COG0201 SecY Preprotein transl 24.8 78 0.0017 30.6 3.4 19 121-145 350-368 (436)
21 PTZ00219 Sec61 alpha subunit; 23.9 78 0.0017 30.8 3.2 28 112-145 392-419 (474)
22 TIGR03130 malonate_delta malon 23.4 2.7E+02 0.0058 21.8 5.5 47 79-127 28-75 (98)
23 PRK01220 malonate decarboxylas 23.1 2.5E+02 0.0055 21.9 5.3 47 79-127 27-73 (99)
24 cd04920 ACT_AKiii-DAPDC_2 ACT 22.4 1.4E+02 0.003 20.3 3.5 55 60-115 3-61 (63)
25 TIGR02883 spore_cwlD N-acetylm 21.3 1.2E+02 0.0027 25.1 3.6 41 127-175 7-47 (189)
26 TIGR00967 3a0501s007 preprotei 20.9 1E+02 0.0022 29.2 3.3 21 121-147 331-351 (410)
27 COG2036 HHT1 Histones H3 and H 20.5 2.1E+02 0.0047 21.9 4.4 24 135-158 22-45 (91)
28 cd04890 ACT_AK-like_1 ACT doma 20.1 1.3E+02 0.0029 19.7 3.0 25 91-115 37-61 (62)
No 1
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=99.94 E-value=3.8e-26 Score=183.56 Aligned_cols=114 Identities=25% Similarity=0.484 Sum_probs=101.0
Q ss_pred eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445 80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI 159 (209)
Q Consensus 80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI 159 (209)
|++++ +..+++++.++|+|++++++++++++++++++++ +|||||||| ||+++++++||.+ |+++++++++
T Consensus 1 M~v~~-~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~-~ipGFRkGK------~P~~vi~~~~g~~-i~~~~~~~~~ 71 (145)
T PF05697_consen 1 MKVTV-EKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKV-KIPGFRKGK------APRNVIEKRYGKE-IREEAIEELL 71 (145)
T ss_dssp -EEEE-EEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTT-TBTTS-TTS------S-HHHHHHHHCHH-HHHHHHHHHH
T ss_pred CccEE-EECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-CCCCCCCCC------CCHHHHHHHHHHH-HHHHHHHHHH
Confidence 67888 8889999999999999999999999999999999 799999999 9999999999996 9999999999
Q ss_pred HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445 160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET 208 (209)
Q Consensus 160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~ 208 (209)
+.++.+|+++++++|++.|.+. ...+++|++|+|+++|++.|.
T Consensus 72 ~~~~~~~~~~~~~~~i~~p~i~------~~~~~~~~~~~~~~~~~~~Pe 114 (145)
T PF05697_consen 72 QEAYEEAIKEEKIKPIGDPEIE------EKDFKEGEDFEFEVEFEVFPE 114 (145)
T ss_dssp HHHHHHHHHHTTS-ESSEEEEE------EEEEETTS-EEEEEEEEE--E
T ss_pred HHHHHHHHHHcCCCcccccccc------ccccccCCCEEEEEEEEecCC
Confidence 9999999999999999999885 367899999999999999763
No 2
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-23 Score=196.09 Aligned_cols=114 Identities=26% Similarity=0.491 Sum_probs=107.9
Q ss_pred eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445 80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI 159 (209)
Q Consensus 80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI 159 (209)
|++++ ++++++.+.++|+||++.++..++++|+++++++ +|||||||| ||+++++++|| ..|++++++++|
T Consensus 1 M~v~~-e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v-~IpGFRkGK------vP~~ii~~ryg-~~v~~d~~~~ll 71 (441)
T COG0544 1 MKVTV-EKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKV-KIPGFRKGK------VPRKVIEQRYG-EAVRQDVLNELL 71 (441)
T ss_pred CCeee-eecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-cCCCCCCCC------CCHHHHHHHHh-HHHHHHHHHHHH
Confidence 56788 9999999999999999999999999999999999 899999999 99999999999 579999999999
Q ss_pred HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445 160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET 208 (209)
Q Consensus 160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~ 208 (209)
+++|.+++++++++|+++|.+. ...+++|++|+|++.|+|.|.
T Consensus 72 ~~~~~~a~~e~~~~~~~~p~~~------~~~~e~~~~~~f~~~~ev~Pe 114 (441)
T COG0544 72 PEAFEEAIKEEGLKPAGQPEIE------ITEFEKGEDFEFTAEVEVYPE 114 (441)
T ss_pred HHHHHHHHHHhCcCcCCCCCcc------cccccCCCceEEEEEEEEeec
Confidence 9999999999999999999776 367999999999999999874
No 3
>PRK01490 tig trigger factor; Provisional
Probab=99.89 E-value=6.8e-23 Score=189.86 Aligned_cols=114 Identities=21% Similarity=0.399 Sum_probs=107.2
Q ss_pred eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445 80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI 159 (209)
Q Consensus 80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI 159 (209)
|++++ +..++++++++|+||+++++..++++++++++++ +|||||||| ||+++|+++||++ |++++++++|
T Consensus 1 M~v~~-~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRkGk------vP~~ii~k~~g~~-i~~e~~~~li 71 (435)
T PRK01490 1 MQVTV-EKLEGLERRLTITVPAEEIEKAVDKALKKLAKTV-RIPGFRKGK------VPRKIVEQRYGES-VRQEALNDLL 71 (435)
T ss_pred CcceE-EEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhC-cCCCccCCC------CCHHHHHHHHhHH-HHHHHHHHHH
Confidence 56777 8899999999999999999999999999999999 799999999 9999999999985 9999999999
Q ss_pred HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445 160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET 208 (209)
Q Consensus 160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~ 208 (209)
+++|.+|+++++++|+++|.+.. ..++++++|+|+++|+|.|.
T Consensus 72 ~~~~~~~i~~~~~~~~~~p~i~~------~~~~~~~~~~~~~~~~v~Pe 114 (435)
T PRK01490 72 PEAYEEAIKEEGIRPAGQPEIEP------TEEEKGKDLEFTAEVEVYPE 114 (435)
T ss_pred HHHHHHHHHHcCCCcCCCCcccc------cccCCCCcEEEEEEeeecCC
Confidence 99999999999999999999973 45788999999999999774
No 4
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.85 E-value=6e-21 Score=175.38 Aligned_cols=102 Identities=24% Similarity=0.431 Sum_probs=95.6
Q ss_pred EEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhcCC
Q 028445 93 LKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDL 172 (209)
Q Consensus 93 i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI~~~~~ealeee~L 172 (209)
++++|+||+++++..++++++++++++ +|||||||| ||+++|+++||++ |+.++++++|++++.+|++++++
T Consensus 1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~-~ipGFRkGK------vP~~~i~k~~g~~-i~~e~~~~li~~~~~~~~~~~~~ 72 (408)
T TIGR00115 1 RKLTVEVPAEEVEEEVDKALKELAKKV-KIPGFRKGK------VPRSVVEKRYGKE-VRQEALNELLQEAFSEAVKEEKI 72 (408)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhC-CCCCccCCC------CCHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhCCC
Confidence 368999999999999999999999999 799999999 9999999999985 99999999999999999999999
Q ss_pred cccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445 173 KVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET 208 (209)
Q Consensus 173 ~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~ 208 (209)
+|+++|.+.. ..+++|++|+|+++|++.|.
T Consensus 73 ~~~~~p~~~~------~~~~~~~~~~~~~~~~v~Pe 102 (408)
T TIGR00115 73 RPIGQPEIEV------KEIEDGKDLEFTAEFEVYPE 102 (408)
T ss_pred CcCCCCcccc------ccccCCCCEEEEEEEEecCc
Confidence 9999999862 46788999999999999774
No 5
>PHA00440 host protein H-NS-interacting protein
Probab=76.83 E-value=33 Score=26.85 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHhcC
Q 028445 102 AKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVL--GPTNVYKEVIKKVIDTTVAEFVEKED 171 (209)
Q Consensus 102 ~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~--G~~~V~~eai~~lI~~~~~ealeee~ 171 (209)
.+.++.+.+.|.+|++.+ |-|-+...--+++|.+-+ |++.+...+++.=+.+.+.+.+++..
T Consensus 19 se~e~~~~e~l~~Lak~v--------~~GE~~~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E~~ 82 (98)
T PHA00440 19 SETEAILEEDILDLAKQA--------GAGEEVNPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEEST 82 (98)
T ss_pred hHHHHHHHHHHHHHHhhc--------CCcccCChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 678899999999999999 333344445677888765 77666666666666666555555533
No 6
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=73.77 E-value=41 Score=26.31 Aligned_cols=69 Identities=17% Similarity=0.356 Sum_probs=45.4
Q ss_pred EEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHhcC
Q 028445 94 KIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVL--GPTNVYKEVIKKVIDTTVAEFVEKED 171 (209)
Q Consensus 94 ~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~--G~~~V~~eai~~lI~~~~~ealeee~ 171 (209)
.++..++.++ +..+.+.+-.+++.+ +.|-+..---+.+|.+-+ |++.+...+++.=+.+.+.+.+.+.+
T Consensus 12 ~vtav~~se~-e~~~~e~ll~Lak~v--------~~GE~~~~~~re~l~qaLT~G~egav~f~~k~g~R~~IKe~~~E~s 82 (98)
T PF11247_consen 12 DVTAVIDSEQ-EEEFEEDLLELAKKV--------GAGEKVSGFQREMLVQALTHGPEGAVAFVVKQGIREAIKEMLSEYS 82 (98)
T ss_pred EEEEEeCHHH-HHHHHHHHHHHHhhc--------CCccccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555 466777788899999 233333334677777754 77777777777777777776666655
No 7
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.13 E-value=41 Score=27.82 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=36.6
Q ss_pred eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhC---CCCCCC--------CCCCCCC
Q 028445 80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAA---QPIPGF--------RRVKGGK 132 (209)
Q Consensus 80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~a---q~IPGF--------RkGKggk 132 (209)
|+|+.-.+..+-++++-++-.+...+..+..+-..+-.-. .+|||| |-|+||.
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~ 64 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGN 64 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCc
Confidence 4666645567888888888888888776666655543321 279999 6788886
No 8
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=45.68 E-value=91 Score=23.60 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=34.0
Q ss_pred cceeeEEEeeCCCceEEEEEEEc-hhhHHHHHHHHHHHHHhhCCCCCCC
Q 028445 78 EDFVVSTTRTNEATELKIGVEVS-GAKTRAIFDDVFDKMVAAAQPIPGF 125 (209)
Q Consensus 78 ~~~~v~v~e~~~~~~i~l~V~V~-~~~~~~~~dkal~~lak~aq~IPGF 125 (209)
.|..|.+ ++.+...+++.++=+ ...+...+++++.+..+.. .|++-
T Consensus 14 sD~~V~v-~p~~~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~-~i~~~ 60 (87)
T PF06857_consen 14 SDLEVTV-EPAESGGIEIELESSVVKQFGDQIRAVIRETLEEL-GIEDA 60 (87)
T ss_pred CcEEEEE-EeCCCCcEEEEEEchHHhhhHHHHHHHHHHHHHhc-CCCce
Confidence 3788998 888778888888888 6666777777777777777 46553
No 9
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=31.10 E-value=1.3e+02 Score=25.07 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=40.9
Q ss_pred cccCCCccccceeeEEEeeCCCceEEEEEEEc------hhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 028445 69 DAGVSSSQFEDFVVSTTRTNEATELKIGVEVS------GAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGK 132 (209)
Q Consensus 69 ~~~~~~~~~~~~~v~v~e~~~~~~i~l~V~V~------~~~~~~~~dkal~~lak~aq~IPGFRkGKggk 132 (209)
.+..-...|.|.++.|.-..++....+++.|+ ++.+...+++-+..+++++ |||+--++++
T Consensus 9 G~l~lP~~w~DrSvNvf~~~~~gt~~~sfvIsRd~~~~g~~~~~y~~rql~~l~k~L---pgy~~~~~~e 75 (147)
T COG5435 9 GTLELPAAWQDRSVNVFVSGDNGTSGFSFVISRDPLEPGDTFPEYVQRQLALLRKQL---PGYELHHRRE 75 (147)
T ss_pred eeEcCcchhccceEEEEEecCCCcceeEEEEecCCCCCCCcHHHHHHHHHHHHHhhC---CCeEEeeccc
Confidence 34445677889999983333443455555553 4667788888888888865 8999866443
No 10
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.91 E-value=46 Score=24.61 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=37.4
Q ss_pred cccceeeEEEeeCCCceEEEEEEEchhhHHH-HHHHHHHHHHhhC
Q 028445 76 QFEDFVVSTTRTNEATELKIGVEVSGAKTRA-IFDDVFDKMVAAA 119 (209)
Q Consensus 76 ~~~~~~v~v~e~~~~~~i~l~V~V~~~~~~~-~~dkal~~lak~a 119 (209)
-|++..+++ |..+.+--.++|.+..++++. ..++.++++.+.+
T Consensus 24 I~E~~~is~-Eh~PSGID~~Siii~~~~~~~~~~~~i~~~i~~~~ 67 (76)
T cd04911 24 ILEDNGISY-EHMPSGIDDISIIIRDNQLTDEKEQKILAEIKEEL 67 (76)
T ss_pred HHHHcCCCE-eeecCCCccEEEEEEccccchhhHHHHHHHHHHhc
Confidence 467778888 888888888999999999998 9999999998877
No 11
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=30.60 E-value=49 Score=25.81 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=12.3
Q ss_pred EEEEchhhHHHHHHHHHHH
Q 028445 96 GVEVSGAKTRAIFDDVFDK 114 (209)
Q Consensus 96 ~V~V~~~~~~~~~dkal~~ 114 (209)
.++|+.++++.+|+.+-..
T Consensus 41 eieI~d~eL~~aFeeiAaR 59 (98)
T PRK13848 41 EIEIEEAELQAAFEELAKR 59 (98)
T ss_pred ccccCHHHHHHHHHHHHHH
Confidence 3677777777776665444
No 12
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=29.33 E-value=2.5e+02 Score=21.49 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=29.6
Q ss_pred ceeeEEEeeCCCceEEEEEEEchh-hHHHHHHHHHHHHHhhCCCCCCC
Q 028445 79 DFVVSTTRTNEATELKIGVEVSGA-KTRAIFDDVFDKMVAAAQPIPGF 125 (209)
Q Consensus 79 ~~~v~v~e~~~~~~i~l~V~V~~~-~~~~~~dkal~~lak~aq~IPGF 125 (209)
|+.|.+ ++..+..+.+.|+=+-. .+...+++++.+..... .+++-
T Consensus 16 Dl~V~v-eP~~~~~i~i~i~SsV~~~Fg~~i~~vv~~~l~~~-~v~~~ 61 (92)
T PRK13253 16 DVMIRI-APADTQGIDIQLESSVEKQFGDQIRAVILETLAKL-GVENA 61 (92)
T ss_pred CEEEEE-EeCCCCcEEEEEEeeHHhhhHHHHHHHHHHHHHhc-CCCce
Confidence 788888 88654567777776666 66666666666666666 35443
No 13
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=28.06 E-value=58 Score=31.31 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHhh
Q 028445 121 PIPGFRRVKGGKTPNIPRDILLEVL 145 (209)
Q Consensus 121 ~IPGFRkGKggk~~~vP~~vl~k~~ 145 (209)
-|||+|||| .-.+.+++..
T Consensus 347 ~IPGiRPGk------~T~~yL~~~i 365 (434)
T PRK12907 347 YVPGIRPGK------STEQYVTKIL 365 (434)
T ss_pred cCCCcCCCh------hHHHHHHHHH
Confidence 699999999 7777776665
No 14
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=27.79 E-value=56 Score=32.07 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=52.5
Q ss_pred hccccccCceeeecccccccc---CCCccccceeeEE--EeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhh-------
Q 028445 51 RKNHKYCPPIFVVLSAVEDAG---VSSSQFEDFVVST--TRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAA------- 118 (209)
Q Consensus 51 r~~~~~~~~~~av~s~~~~~~---~~~~~~~~~~v~v--~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~------- 118 (209)
...-|.|.|.+||+.-.+.-. .--+.|-.-++.+ -|..+-+.+-+.|+=|.+..=++--.+|.+++..
T Consensus 410 ~e~V~~fiP~~~vGAiIGkkG~hIKql~RfagASiKIappE~pdvseRMViItGppeaqfKAQgrifgKikEenf~~Pke 489 (584)
T KOG2193|consen 410 QEQVRMFIPAQAVGAIIGKKGQHIKQLSRFAGASIKIAPPEIPDVSERMVIITGPPEAQFKAQGRIFGKIKEENFFLPKE 489 (584)
T ss_pred hhheeeeccHHHHHHHHhhcchhHHHHHHhccceeeecCCCCCCcceeEEEecCChHHHHhhhhhhhhhhhhhccCCchh
Confidence 455689999999965554422 2223444446665 2334556666777778888778888888877653
Q ss_pred -------CCCCCCCC----CCCCCCCC
Q 028445 119 -------AQPIPGFR----RVKGGKTP 134 (209)
Q Consensus 119 -------aq~IPGFR----kGKggk~~ 134 (209)
+ ++|-|- -||||||-
T Consensus 490 evklethi-rVPs~~aGRvIGKGGktV 515 (584)
T KOG2193|consen 490 EVKLETHI-RVPSSAAGRVIGKGGKTV 515 (584)
T ss_pred hheeeeee-eccchhhhhhhccccccH
Confidence 4 455443 48999763
No 15
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=27.35 E-value=46 Score=30.53 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=19.8
Q ss_pred HHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhCh
Q 028445 112 FDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGP 147 (209)
Q Consensus 112 l~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~ 147 (209)
-+++.|.---|||+|+|| .-++.+.+..-.
T Consensus 271 A~~lkk~g~~I~GirpG~------~T~~yL~~~i~~ 300 (346)
T PF00344_consen 271 AENLKKSGDYIPGIRPGK------PTEKYLNKVIPR 300 (346)
T ss_dssp HHHCHCTTSSSSTCTTSC------HHHHHHHHHHHH
T ss_pred HHHHHHhCCEeCCCCCCh------hHHHHHHHHHHH
Confidence 334444222699999999 777777666633
No 16
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=27.13 E-value=38 Score=24.27 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=15.2
Q ss_pred HHHHHHHHhhCCCCCCCCCC
Q 028445 109 DDVFDKMVAAAQPIPGFRRV 128 (209)
Q Consensus 109 dkal~~lak~aq~IPGFRkG 128 (209)
--.|+++|-+= .||||+|.
T Consensus 41 R~cfRE~A~~g-~ipGv~K~ 59 (61)
T COG0199 41 RICFRELAHKG-EIPGVKKA 59 (61)
T ss_pred HHHHHHHhhcc-CCCCeEec
Confidence 35688898888 59999974
No 17
>PRK02103 malonate decarboxylase subunit delta; Provisional
Probab=25.88 E-value=2.2e+02 Score=22.52 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=40.4
Q ss_pred ceeeEEEeeCC-CceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 028445 79 DFVVSTTRTNE-ATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRR 127 (209)
Q Consensus 79 ~~~v~v~e~~~-~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRk 127 (209)
|+.|-+ |+.. +.+..+.|+-+..=.....+.++.++.... +.+|-|-
T Consensus 30 dLEVL~-ep~~~~~~~~v~I~Tsv~Gf~~~WqaVl~~f~~r~-~~~~~~i 77 (105)
T PRK02103 30 NLEVLV-ERVLPGGECEVEIRTAAVGFGAVWQAVVADFVERR-SPGGLRI 77 (105)
T ss_pred ceEEEE-eccCCCCeEEEEEEecccCcHHHHHHHHHHHHhhC-CCCccEE
Confidence 567777 8876 789999999999999999999999999998 6888775
No 18
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=25.22 E-value=94 Score=26.05 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=34.0
Q ss_pred hCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhcCCcccC-ccc
Q 028445 118 AAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSK-DLR 179 (209)
Q Consensus 118 ~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI~~~~~ealeee~L~pi~-~P~ 179 (209)
.+|.|||-|+|- ++|.+.-|-.+|. .+++.| +++|..||+|.. .|.
T Consensus 71 ~~qtvP~V~PG~---------eiLLr~~Gw~kV~-~VL~~I------DaiEalGidp~dvaPd 117 (149)
T PF11000_consen 71 AYQTVPFVRPGG---------EILLRIEGWPKVE-RVLQAI------DAIEALGIDPADVAPD 117 (149)
T ss_pred CcccCCCcCcch---------hhhccccCcHHHH-HHHHHH------hHHHHcCCChhhcChH
Confidence 456899999998 8999999986543 233322 889999999974 443
No 19
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=24.82 E-value=75 Score=29.99 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHhhCh
Q 028445 121 PIPGFRRVKGGKTPNIPRDILLEVLGP 147 (209)
Q Consensus 121 ~IPGFRkGKggk~~~vP~~vl~k~~G~ 147 (209)
-|||+|||| .=.+.+++....
T Consensus 312 ~IpGiRpG~------~T~~yL~~~i~~ 332 (395)
T TIGR02920 312 YIPGIAPGK------DTQRYLNRLARR 332 (395)
T ss_pred CccCcCCCc------hHHHHHHHHHHH
Confidence 699999999 777777766643
No 20
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=24.77 E-value=78 Score=30.63 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHhh
Q 028445 121 PIPGFRRVKGGKTPNIPRDILLEVL 145 (209)
Q Consensus 121 ~IPGFRkGKggk~~~vP~~vl~k~~ 145 (209)
-|||+|||| .=.+.+++..
T Consensus 350 ~IPGiRpg~------~te~yL~rvi 368 (436)
T COG0201 350 FIPGIRPGK------DTEKYLNRVI 368 (436)
T ss_pred cCCCcCCCh------hHHHHHHHHH
Confidence 599999999 5555555544
No 21
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=23.91 E-value=78 Score=30.76 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=18.3
Q ss_pred HHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhh
Q 028445 112 FDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVL 145 (209)
Q Consensus 112 l~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~ 145 (209)
-+++.|.---|||+|+|| .=.+.+++..
T Consensus 392 A~~lkk~g~~IpG~RpGk------~t~~yL~k~i 419 (474)
T PTZ00219 392 AKQLKDQGMGMVGYRDSS------SMVRVLNRYI 419 (474)
T ss_pred HHHHHHcCCCccCcCCCh------hHHHHHHHHH
Confidence 344434333699999999 6666666655
No 22
>TIGR03130 malonate_delta malonate decarboxylase acyl carrier protein. Members of this protein family are the acyl carrier protein, also called the delta subunit, of malonate decarboxylase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=23.45 E-value=2.7e+02 Score=21.76 Aligned_cols=47 Identities=19% Similarity=0.354 Sum_probs=39.3
Q ss_pred ceeeEEEeeC-CCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 028445 79 DFVVSTTRTN-EATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRR 127 (209)
Q Consensus 79 ~~~v~v~e~~-~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRk 127 (209)
|+.|-+ |+. .+.+..+.|+-+.+=.....+.++.++.... +.+|-|-
T Consensus 28 dLEVL~-ep~~~~~~~~v~I~Tsv~Gf~~~Wqavl~rf~~~~-~~~~~~i 75 (98)
T TIGR03130 28 DLEVLV-EPGAEGGKTEVRITTSVDGFGAVWQAVIERFFARY-PLAGLQI 75 (98)
T ss_pred ceEEEE-EcCCCCCeEEEEEEecccCcHHHHHHHHHHHHhhC-CCCccEE
Confidence 567777 774 4889999999999999999999999999998 6888664
No 23
>PRK01220 malonate decarboxylase subunit delta; Provisional
Probab=23.08 E-value=2.5e+02 Score=21.94 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=39.7
Q ss_pred ceeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 028445 79 DFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRR 127 (209)
Q Consensus 79 ~~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRk 127 (209)
|+.|-+ |+..+.+..+.|+-+.+=.....+.++.++.... +.||-|-
T Consensus 27 dLEVL~-ep~~~~~~~v~I~Tsv~Gf~~~Wqavl~rf~~~~-~~~~~~i 73 (99)
T PRK01220 27 DLEVLL-EPGDAGKLSIQVVTSVNGSAARWKALFERFFTAQ-TPPAANI 73 (99)
T ss_pred ceEEEE-EcCCCCcEEEEEEecccCcHHHHHHHHHHHHhhC-CCCccEE
Confidence 567777 7778889999999999989999999999999888 6777664
No 24
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.40 E-value=1.4e+02 Score=20.29 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=34.0
Q ss_pred eeeeccccccc-cCC---CccccceeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHH
Q 028445 60 IFVVLSAVEDA-GVS---SSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKM 115 (209)
Q Consensus 60 ~~av~s~~~~~-~~~---~~~~~~~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~l 115 (209)
||.|+.|+... ... ...+.+..+.+ -....+.+.+++-|+.++.+++....-..+
T Consensus 3 VsvVG~g~~~~~gv~~~~~~~L~~~~i~~-i~~~~s~~~is~vv~~~d~~~av~~LH~~f 61 (63)
T cd04920 3 VSLVGRGIRSLLHKLGPALEVFGKKPVHL-VSQAANDLNLTFVVDEDQADGLCARLHFQL 61 (63)
T ss_pred EEEECCCcccCccHHHHHHHHHhcCCceE-EEEeCCCCeEEEEEeHHHHHHHHHHHHHHH
Confidence 57777666432 111 11123445555 444678899999999999988777655443
No 25
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=21.25 E-value=1.2e+02 Score=25.09 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=27.8
Q ss_pred CCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 028445 127 RVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVS 175 (209)
Q Consensus 127 kGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI~~~~~ealeee~L~pi 175 (209)
+||||..|-+-- ..-+++.-+.--|...+.++|++.|.+++
T Consensus 7 pGHGg~d~GA~~--------~~g~~E~~~~l~ia~~l~~~L~~~G~~V~ 47 (189)
T TIGR02883 7 PGHGGIDGGAVG--------KDGTLEKDITLEIALKLKDYLQEQGALVV 47 (189)
T ss_pred CCCCCCCCCCCC--------CCCccHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 689998766522 11144555555666778899999998886
No 26
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=20.91 E-value=1e+02 Score=29.20 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHhhCh
Q 028445 121 PIPGFRRVKGGKTPNIPRDILLEVLGP 147 (209)
Q Consensus 121 ~IPGFRkGKggk~~~vP~~vl~k~~G~ 147 (209)
-|||+|+|| .=.+.+++..-.
T Consensus 331 ~IpGiRpG~------~T~~yL~~~i~~ 351 (410)
T TIGR00967 331 FIPGIRPGK------MTEKYLKRVIPR 351 (410)
T ss_pred cCCCcCCCh------hHHHHHHHHHHH
Confidence 699999999 657777766633
No 27
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=20.48 E-value=2.1e+02 Score=21.86 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=17.5
Q ss_pred CCcHHHHHHhhChhHHHHHHHHHH
Q 028445 135 NIPRDILLEVLGPTNVYKEVIKKV 158 (209)
Q Consensus 135 ~vP~~vl~k~~G~~~V~~eai~~l 158 (209)
.+|..=|.+..|.++|-.+|++.+
T Consensus 22 ~apv~Ri~r~~~~~Rvs~~A~~~l 45 (91)
T COG2036 22 KAPVRRILRKAGAERVSSSAIEEL 45 (91)
T ss_pred chHHHHHHHHHhHHHhhHHHHHHH
Confidence 377777888888887777666544
No 28
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=20.05 E-value=1.3e+02 Score=19.70 Aligned_cols=25 Identities=4% Similarity=0.131 Sum_probs=19.1
Q ss_pred ceEEEEEEEchhhHHHHHHHHHHHH
Q 028445 91 TELKIGVEVSGAKTRAIFDDVFDKM 115 (209)
Q Consensus 91 ~~i~l~V~V~~~~~~~~~dkal~~l 115 (209)
+...+++.++.++.++.+++.++++
T Consensus 37 ~~~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 37 SENSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred CCCEEEEEEehhhhhHHHHHHHHhh
Confidence 3477889999988877777776665
Done!