BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028446
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCV 137
GG+ +N+ LS+ G PC +G+ V++ + GVDVS++ + +G T
Sbjct: 40 GGNASNSCTVLSL-LGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSC 98
Query: 138 CLVDAS-GNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174
C+++ S GNRT+ ++ + A + D+ KW+
Sbjct: 99 CIINNSNGNRTIVLHDTSLPDVSATDFEKVDLTQFKWI 136
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCV 137
GG+ +N+ LS+ G PC +G+ V++ + GVDVS++ + +G T
Sbjct: 55 GGNASNSCTVLSL-LGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSC 113
Query: 138 CLVDAS-GNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174
C+++ S GNRT+ ++ + A + D+ KW+
Sbjct: 114 CIINNSNGNRTIVLHDTSLPDVSATDFEKVDLTQFKWI 151
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR-MKRGPTGQCVCLVDASGNRTMRPCL 152
GVPCG+I G+D G + + + GVD+ + + TG SG+R +
Sbjct: 51 GVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNI 110
Query: 153 SNAV--KIQA---DELIAEDVKGSKWLVLRFGMFNFEVIQA---AIRIAKQEGLSVSMD 203
NA K+ A DE I +D + + + +F+F + A A+ I K G +S D
Sbjct: 111 KNAACGKLSAQHVDENILKDC--THFHIXGSSLFSFHXVDAVKKAVTIVKANGGVISFD 167
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 22 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNPT-SLPGGSALNS 74
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLIN 132
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 22 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNPT-SLPGGSALNS 74
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLIN 132
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 14/183 (7%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
L+D A V+ LL++ + +I + E +H+ L E + IAGGSV N+
Sbjct: 33 LLDISAVVEKDLLNKYDMQPNNAI---LAEEKHM---PMYQELIEKYQAEYIAGGSVQNS 86
Query: 86 IRGLSVGFGVPCGLI--GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R P I G G D+ ++ +GV+V R PTG C LV +
Sbjct: 87 LRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVLVTGT 146
Query: 144 GNRTMRPCLSNAVKIQADELIAED----VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLS 199
R++ L+ A + L ++ ++G+++ + G F ++A+ +AK+ +
Sbjct: 147 -QRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVS-GFFFTVSFESALSVAKEAAAT 204
Query: 200 VSM 202
M
Sbjct: 205 GRM 207
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 22 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNPT-SLPGGSALNS 74
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLIN 132
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 42 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNPT-SLPGGSALNS 94
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 95 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLIN 152
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 69 DEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128
+E GGS N + G S G+ G IG DDQ G+ S + GVD S L
Sbjct: 34 EETXTFSKYVGGSPANIVIG-SSKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNL-- 90
Query: 129 KRGPTGQCVCLVDASGNRT 147
+VD G++T
Sbjct: 91 ----------VVDQEGHKT 99
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 79 GGSVTNTIRGLSVG-FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128
GG+ N G+ V G CG IG GDD G+ Q +GVDV+ LR+
Sbjct: 50 GGASANV--GVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL 98
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 79 GGSVTNTIRGLSVG-FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128
GG+ N G+ V G CG IG GDD G+ Q +GVDV+ LR+
Sbjct: 50 GGASANV--GVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL 98
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 101 GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM 148
GA+GDD ++++ + V + R GP+G + +VDAS T+
Sbjct: 77 GAFGDDPAAAQLRAHLRANAVGLDRTVTVPGPSGTAIIVVDASAENTV 124
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPT 133
++ GG+ N L+ GV G +G G+D+ G + ++ GVD++ R G T
Sbjct: 28 LEVYVGGAEVNVAVALAR-LGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAPGFT 86
Query: 134 G 134
G
Sbjct: 87 G 87
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTG 134
G CG+I GDD+ G + ++ GVDVS +++ PTG
Sbjct: 47 GNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTG 88
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGP-TGQCVCLVDASGNRTMRPCLSNAVK 157
L GA GDD+ G + ++ SG+D S + G + ++D G R + P + +
Sbjct: 85 LWGAVGDDETGTRILRDLSESGIDTSGXTVAPGARSALSTIIIDNRGERLIVPFYDHRLH 144
Query: 158 IQADELIAEDV 168
+ ED+
Sbjct: 145 EKKRACTPEDI 155
>pdb|3MN1|A Chain A, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|B Chain B, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|C Chain C, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|D Chain D, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|E Chain E, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|F Chain F, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|G Chain G, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|H Chain H, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|I Chain I, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|J Chain J, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|K Chain K, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|L Chain L, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3NRJ|A Chain A, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|B Chain B, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|C Chain C, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|D Chain D, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|E Chain E, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|F Chain F, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|G Chain G, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|H Chain H, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|I Chain I, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|J Chain J, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|K Chain K, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|L Chain L, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
Length = 189
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 44 ERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGA 102
+RG +I +A+ +++ +L++ + + +++ S IKT NT+ G + + G+ A
Sbjct: 14 QRGKAIKLAVFDVDGVLTDGRLYFMEDGSEIKTF------NTLDGQGIKMLIASGVTTA 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,932,318
Number of Sequences: 62578
Number of extensions: 238284
Number of successful extensions: 566
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 17
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)