Query 028446
Match_columns 209
No_of_seqs 171 out of 1743
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:38:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15074 inosine/guanosine kin 100.0 1.6E-32 3.4E-37 240.5 22.5 194 7-207 26-230 (434)
2 PLN02379 pfkB-type carbohydrat 100.0 4.6E-32 9.9E-37 234.2 22.8 204 1-207 7-214 (367)
3 PLN02813 pfkB-type carbohydrat 100.0 7.5E-31 1.6E-35 230.4 23.0 196 4-207 58-265 (426)
4 PTZ00247 adenosine kinase; Pro 100.0 1.1E-26 2.3E-31 199.2 20.5 186 12-206 2-197 (345)
5 cd01168 adenosine_kinase Adeno 99.9 5.4E-26 1.2E-30 192.0 21.3 180 16-206 2-183 (312)
6 PRK11142 ribokinase; Provision 99.9 5.6E-25 1.2E-29 185.0 19.1 162 17-207 4-168 (306)
7 PTZ00292 ribokinase; Provision 99.9 5.4E-25 1.2E-29 187.0 19.0 171 6-207 8-183 (326)
8 cd01174 ribokinase Ribokinase 99.9 9.9E-25 2.1E-29 182.2 18.9 162 17-207 1-165 (292)
9 PLN02967 kinase 99.9 4.5E-24 9.8E-29 191.6 18.3 174 14-205 195-374 (581)
10 PLN02323 probable fructokinase 99.9 3.6E-24 7.7E-29 182.4 16.5 162 13-206 8-176 (330)
11 cd01944 YegV_kinase_like YegV- 99.9 2.2E-23 4.8E-28 174.1 17.6 161 17-207 1-166 (289)
12 cd01942 ribokinase_group_A Rib 99.9 2.9E-23 6.3E-28 172.2 17.4 158 17-207 1-159 (279)
13 PLN02543 pfkB-type carbohydrat 99.9 1.3E-23 2.8E-28 186.7 16.1 173 15-206 125-306 (496)
14 KOG2854 Possible pfkB family c 99.9 1.8E-23 4E-28 172.8 15.1 185 15-208 6-199 (343)
15 cd01939 Ketohexokinase Ketohex 99.9 6.6E-23 1.4E-27 171.5 18.0 159 17-205 1-167 (290)
16 COG0524 RbsK Sugar kinases, ri 99.9 6.1E-23 1.3E-27 173.2 17.5 165 17-208 1-169 (311)
17 PLN02341 pfkB-type carbohydrat 99.9 1.9E-22 4.1E-27 179.4 20.2 177 13-207 70-264 (470)
18 PRK09850 pseudouridine kinase; 99.9 1.9E-22 4.1E-27 170.7 16.5 160 15-206 4-167 (313)
19 cd01945 ribokinase_group_B Rib 99.9 7.5E-22 1.6E-26 164.3 18.8 159 17-206 1-160 (284)
20 PLN02548 adenosine kinase 99.9 7.3E-22 1.6E-26 168.3 18.8 177 21-206 1-186 (332)
21 TIGR02152 D_ribokin_bact ribok 99.9 6.9E-22 1.5E-26 165.3 17.9 156 24-207 2-160 (293)
22 cd01166 KdgK 2-keto-3-deoxyglu 99.9 3.2E-22 7E-27 167.0 15.9 157 17-206 1-165 (294)
23 KOG2855 Ribokinase [Carbohydra 99.9 4.7E-22 1E-26 165.9 15.2 166 14-207 8-180 (330)
24 cd01940 Fructoselysine_kinase_ 99.9 1.5E-21 3.2E-26 161.0 16.2 131 74-207 17-148 (264)
25 cd01167 bac_FRK Fructokinases 99.9 4.2E-21 9.1E-26 160.5 17.1 154 17-206 1-160 (295)
26 cd01941 YeiC_kinase_like YeiC- 99.9 2.8E-21 6E-26 161.1 15.8 160 17-206 1-163 (288)
27 cd01947 Guanosine_kinase_like 99.9 9.8E-21 2.1E-25 156.3 17.8 153 17-207 1-153 (265)
28 TIGR03828 pfkB 1-phosphofructo 99.9 9E-21 1.9E-25 159.2 16.2 154 21-206 4-166 (304)
29 PRK09954 putative kinase; Prov 99.9 1.5E-20 3.2E-25 162.3 17.8 158 16-206 58-220 (362)
30 PRK09813 fructoselysine 6-kina 99.9 1.4E-20 3E-25 155.2 15.0 145 16-207 1-146 (260)
31 TIGR02198 rfaE_dom_I rfaE bifu 99.8 8.4E-20 1.8E-24 154.3 17.9 167 13-207 5-183 (315)
32 PRK09513 fruK 1-phosphofructok 99.8 8.8E-20 1.9E-24 154.3 17.2 159 16-206 3-170 (312)
33 PF00294 PfkB: pfkB family car 99.8 1.6E-20 3.4E-25 157.1 12.3 160 16-205 2-168 (301)
34 cd01172 RfaE_like RfaE encodes 99.8 1.3E-19 2.7E-24 152.3 17.6 165 17-207 1-174 (304)
35 PRK09434 aminoimidazole ribosi 99.8 1.3E-19 2.9E-24 152.4 16.5 150 16-206 3-159 (304)
36 PRK10294 6-phosphofructokinase 99.8 1.3E-19 2.9E-24 152.9 16.0 159 17-206 3-169 (309)
37 cd01943 MAK32 MAK32 kinase. M 99.8 2.7E-20 5.8E-25 158.8 10.2 150 17-207 1-164 (328)
38 cd01164 FruK_PfkB_like 1-phosp 99.8 3.6E-19 7.8E-24 148.8 15.3 154 19-206 4-167 (289)
39 PRK13508 tagatose-6-phosphate 99.8 6.4E-19 1.4E-23 148.8 16.5 154 19-206 3-165 (309)
40 PRK11316 bifunctional heptose 99.8 9.5E-19 2.1E-23 155.9 16.9 168 14-207 9-181 (473)
41 TIGR01231 lacC tagatose-6-phos 99.8 8.8E-19 1.9E-23 147.9 15.1 151 23-206 6-165 (309)
42 TIGR03168 1-PFK hexose kinase, 99.8 1.3E-18 2.9E-23 146.2 16.0 153 23-207 6-167 (303)
43 PLN02630 pfkB-type carbohydrat 99.8 2.6E-17 5.6E-22 140.7 16.0 144 14-207 10-163 (335)
44 cd01937 ribokinase_group_D Rib 99.7 2.5E-16 5.4E-21 129.2 14.7 137 17-206 1-137 (254)
45 COG1105 FruK Fructose-1-phosph 99.7 3E-16 6.6E-21 130.9 13.6 157 18-206 2-168 (310)
46 cd01946 ribokinase_group_C Rib 99.6 5.9E-15 1.3E-19 122.7 12.6 124 74-205 20-146 (277)
47 KOG2947 Carbohydrate kinase [C 99.6 1.6E-14 3.5E-19 115.2 14.1 163 15-206 4-174 (308)
48 COG2870 RfaE ADP-heptose synth 99.5 5.2E-13 1.1E-17 113.6 15.3 166 14-207 9-181 (467)
49 cd00287 ribokinase_pfkB_like r 99.3 3.3E-11 7.1E-16 94.6 11.6 93 17-207 1-94 (196)
50 KOG3009 Predicted carbohydrate 98.8 3.3E-08 7.3E-13 85.7 8.7 117 19-207 344-460 (614)
51 PF01118 Semialdhyde_dh: Semia 90.7 0.88 1.9E-05 32.8 5.7 94 100-207 2-99 (121)
52 PRK06702 O-acetylhomoserine am 88.3 7.6 0.00016 34.7 10.9 118 52-205 62-185 (432)
53 PRK05968 hypothetical protein; 87.7 12 0.00025 32.8 11.6 114 53-205 65-185 (389)
54 PRK08133 O-succinylhomoserine 87.6 7 0.00015 34.2 10.2 118 53-205 63-184 (390)
55 PF02110 HK: Hydroxyethylthiaz 85.7 1.4 2.9E-05 36.3 4.3 42 166-207 45-89 (246)
56 PRK06444 prephenate dehydrogen 84.9 5 0.00011 31.8 7.1 58 101-208 4-62 (197)
57 PRK07050 cystathionine beta-ly 84.8 15 0.00033 32.2 10.8 115 53-205 67-188 (394)
58 PRK05967 cystathionine beta-ly 84.7 18 0.00038 31.9 11.2 115 53-205 66-187 (395)
59 COG2145 ThiM Hydroxyethylthiaz 83.4 1.8 3.8E-05 35.8 4.0 55 153-207 37-95 (265)
60 PRK09028 cystathionine beta-ly 83.0 21 0.00045 31.5 10.9 115 53-205 63-184 (394)
61 PRK05939 hypothetical protein; 82.9 24 0.00052 31.0 11.3 115 53-205 49-169 (397)
62 PRK08247 cystathionine gamma-s 82.7 27 0.00058 30.1 11.4 37 169-205 135-174 (366)
63 TIGR01324 cysta_beta_ly_B cyst 82.2 26 0.00056 30.6 11.1 115 53-205 52-173 (377)
64 PRK07810 O-succinylhomoserine 81.3 22 0.00048 31.2 10.5 118 53-205 72-193 (403)
65 TIGR01328 met_gam_lyase methio 81.3 19 0.00041 31.5 10.1 115 53-205 61-182 (391)
66 PRK05671 aspartate-semialdehyd 81.1 14 0.00031 31.7 9.0 92 96-207 6-99 (336)
67 PRK08114 cystathionine beta-ly 80.6 19 0.00041 31.8 9.8 66 52-126 63-132 (395)
68 COG1618 Predicted nucleotide k 80.4 17 0.00036 28.3 8.1 107 95-202 6-135 (179)
69 cd01938 ADPGK_ADPPFK ADP-depen 80.1 27 0.00059 31.3 10.6 32 73-105 100-132 (445)
70 cd00614 CGS_like CGS_like: Cys 80.1 22 0.00048 30.6 10.0 114 53-205 42-163 (369)
71 TIGR01325 O_suc_HS_sulf O-succ 79.8 27 0.00059 30.3 10.5 115 53-205 56-177 (380)
72 PRK05613 O-acetylhomoserine am 79.2 24 0.00052 31.5 10.1 116 53-205 71-193 (437)
73 COG0136 Asd Aspartate-semialde 79.2 25 0.00054 30.3 9.6 95 95-206 2-98 (334)
74 PRK08134 O-acetylhomoserine am 78.8 23 0.0005 31.6 9.8 37 169-205 148-187 (433)
75 PF10087 DUF2325: Uncharacteri 78.0 6.8 0.00015 27.0 5.1 39 166-204 44-82 (97)
76 PRK08248 O-acetylhomoserine am 77.7 28 0.0006 31.0 10.0 114 53-205 66-187 (431)
77 PRK08249 cystathionine gamma-s 77.6 22 0.00047 31.2 9.3 36 170-205 149-187 (398)
78 PRK07582 cystathionine gamma-l 77.6 32 0.00069 29.8 10.2 69 53-128 53-122 (366)
79 TIGR00694 thiM hydroxyethylthi 77.1 2.8 6.2E-05 34.3 3.4 55 152-206 30-88 (249)
80 PRK08574 cystathionine gamma-s 77.0 35 0.00076 29.8 10.4 114 53-205 55-175 (385)
81 PRK06728 aspartate-semialdehyd 76.8 23 0.00049 30.8 8.9 93 94-206 5-100 (347)
82 PRK06598 aspartate-semialdehyd 74.9 31 0.00066 30.2 9.3 95 96-207 3-100 (369)
83 PLN02383 aspartate semialdehyd 74.6 21 0.00046 30.8 8.2 94 93-206 6-101 (344)
84 TIGR01329 cysta_beta_ly_E cyst 74.6 42 0.0009 29.2 10.2 37 169-205 130-169 (378)
85 PRK12412 pyridoxal kinase; Rev 74.2 39 0.00084 27.8 9.5 95 99-206 4-108 (268)
86 PRK14874 aspartate-semialdehyd 74.1 27 0.00059 29.9 8.8 91 95-206 2-95 (334)
87 TIGR01296 asd_B aspartate-semi 73.3 26 0.00056 30.1 8.5 90 97-206 2-93 (339)
88 PRK08040 putative semialdehyde 72.9 31 0.00066 29.8 8.7 91 95-206 5-98 (336)
89 cd01171 YXKO-related B.subtili 72.8 5.9 0.00013 32.2 4.2 40 167-206 74-113 (254)
90 cd01170 THZ_kinase 4-methyl-5- 71.0 5.7 0.00012 32.4 3.7 41 165-205 44-87 (242)
91 TIGR00196 yjeF_cterm yjeF C-te 70.7 7.2 0.00016 32.2 4.3 41 166-206 88-128 (272)
92 TIGR01326 OAH_OAS_sulfhy OAH/O 70.7 55 0.0012 28.9 10.1 115 53-205 59-180 (418)
93 PRK09355 hydroxyethylthiazole 70.7 6.2 0.00013 32.6 3.9 54 153-206 36-93 (263)
94 PRK14039 ADP-dependent glucoki 70.2 84 0.0018 28.4 13.3 26 73-99 85-110 (453)
95 PLN02242 methionine gamma-lyas 69.9 44 0.00096 29.6 9.4 34 171-204 164-200 (418)
96 PRK07504 O-succinylhomoserine 69.9 46 0.001 29.2 9.4 37 169-205 149-188 (398)
97 PRK06234 methionine gamma-lyas 69.8 60 0.0013 28.4 10.1 65 53-126 66-134 (400)
98 KOG0257 Kynurenine aminotransf 68.9 13 0.00028 32.9 5.5 48 156-203 158-211 (420)
99 PRK06901 aspartate-semialdehyd 68.4 28 0.0006 29.9 7.3 89 97-203 6-94 (322)
100 TIGR01745 asd_gamma aspartate- 68.4 34 0.00075 29.9 8.1 95 96-207 2-99 (366)
101 PRK07811 cystathionine gamma-s 68.2 48 0.001 28.9 9.1 37 169-205 145-184 (388)
102 PRK06767 methionine gamma-lyas 66.9 58 0.0013 28.3 9.4 36 170-205 146-184 (386)
103 PRK07503 methionine gamma-lyas 66.4 72 0.0016 28.0 9.9 37 169-205 149-188 (403)
104 PRK08861 cystathionine gamma-s 66.3 80 0.0017 27.7 10.1 116 52-205 54-176 (388)
105 PRK05994 O-acetylhomoserine am 65.0 90 0.0019 27.7 10.3 37 169-205 147-186 (427)
106 PRK07324 transaminase; Validat 64.8 74 0.0016 27.4 9.6 36 169-204 152-193 (373)
107 PRK03979 ADP-specific phosphof 64.4 1.1E+02 0.0024 27.7 11.2 82 14-105 11-129 (463)
108 PRK08818 prephenate dehydrogen 62.7 75 0.0016 27.8 9.2 79 99-208 6-91 (370)
109 PRK13730 conjugal transfer pil 61.3 17 0.00037 29.0 4.5 32 171-203 91-122 (212)
110 PRK07812 O-acetylhomoserine am 60.6 93 0.002 27.8 9.6 37 169-205 154-193 (436)
111 PF13460 NAD_binding_10: NADH( 59.6 52 0.0011 24.7 7.0 93 102-206 3-98 (183)
112 PF00128 Alpha-amylase: Alpha 59.2 15 0.00033 30.0 4.2 33 173-205 41-73 (316)
113 PF01041 DegT_DnrJ_EryC1: DegT 58.3 24 0.00051 30.4 5.3 123 79-206 24-149 (363)
114 PLN02509 cystathionine beta-ly 58.2 1.4E+02 0.0031 26.9 11.2 36 170-205 217-255 (464)
115 PF01053 Cys_Met_Meta_PP: Cys/ 56.5 1.4E+02 0.003 26.2 10.3 117 52-205 56-179 (386)
116 TIGR00097 HMP-P_kinase phospho 54.0 25 0.00054 28.6 4.6 36 170-206 67-103 (254)
117 PRK06176 cystathionine gamma-s 53.2 1.5E+02 0.0033 25.7 9.9 36 170-205 134-172 (380)
118 PRK10076 pyruvate formate lyas 51.6 27 0.00059 28.0 4.3 38 170-207 38-77 (213)
119 PRK08776 cystathionine gamma-s 51.2 1.7E+02 0.0037 25.7 10.2 37 169-205 144-183 (405)
120 PRK11863 N-acetyl-gamma-glutam 50.9 1E+02 0.0022 26.3 7.9 36 167-206 47-82 (313)
121 TIGR02045 P_fruct_ADP ADP-spec 50.4 1.9E+02 0.0042 26.0 11.0 39 75-119 85-125 (446)
122 smart00642 Aamy Alpha-amylase 50.2 20 0.00044 27.4 3.3 25 182-206 68-92 (166)
123 cd01169 HMPP_kinase 4-amino-5- 49.3 34 0.00073 27.3 4.6 36 170-206 68-104 (242)
124 PLN00175 aminotransferase fami 48.7 1.9E+02 0.004 25.4 10.3 47 158-204 175-227 (413)
125 cd01173 pyridoxal_pyridoxamine 48.4 28 0.00061 28.1 4.0 37 169-205 71-111 (254)
126 PRK00278 trpC indole-3-glycero 48.0 39 0.00084 27.9 4.8 45 163-207 126-170 (260)
127 PF00070 Pyr_redox: Pyridine n 47.9 35 0.00075 22.2 3.8 43 82-125 11-59 (80)
128 PRK07105 pyridoxamine kinase; 47.6 31 0.00067 28.6 4.2 36 170-206 75-113 (284)
129 COG0626 MetC Cystathionine bet 46.9 2E+02 0.0043 25.5 9.2 66 52-127 64-134 (396)
130 TIGR01140 L_thr_O3P_dcar L-thr 46.8 1.6E+02 0.0035 24.7 8.6 22 183-204 144-165 (330)
131 PLN02968 Probable N-acetyl-gam 46.2 91 0.002 27.4 7.0 96 95-206 39-135 (381)
132 PRK07671 cystathionine beta-ly 45.5 2E+02 0.0044 24.9 10.3 37 169-205 133-172 (377)
133 PRK10785 maltodextrin glucosid 45.4 27 0.00059 32.5 3.8 23 183-205 225-247 (598)
134 PRK06084 O-acetylhomoserine am 45.4 1.8E+02 0.004 25.7 9.0 37 169-205 142-181 (425)
135 PF07075 DUF1343: Protein of u 44.5 1E+02 0.0022 27.0 7.0 96 103-203 8-118 (365)
136 PLN02721 threonine aldolase 43.7 1.9E+02 0.0042 24.1 9.0 35 170-204 137-178 (353)
137 TIGR00978 asd_EA aspartate-sem 43.6 1.5E+02 0.0032 25.5 7.9 36 167-206 70-105 (341)
138 cd00562 NifX_NifB This CD repr 43.5 51 0.0011 22.3 4.2 39 79-123 47-85 (102)
139 COG1180 PflA Pyruvate-formate 43.2 68 0.0015 26.5 5.5 37 170-207 83-122 (260)
140 COG0269 SgbH 3-hexulose-6-phos 42.7 63 0.0014 26.1 5.0 37 169-206 79-115 (217)
141 cd04915 ACT_AK-Ectoine_2 ACT d 42.4 86 0.0019 19.7 5.1 45 97-141 2-50 (66)
142 PRK15407 lipopolysaccharide bi 42.2 2.3E+02 0.005 25.2 9.2 48 158-205 147-194 (438)
143 cd07266 HPCD_N_class_II N-term 41.8 79 0.0017 21.7 5.1 46 105-150 70-116 (121)
144 PRK06427 bifunctional hydroxy- 41.6 53 0.0012 26.7 4.7 35 170-205 73-108 (266)
145 PF04587 ADP_PFK_GK: ADP-speci 41.2 67 0.0014 28.8 5.5 149 46-207 68-260 (444)
146 TIGR02080 O_succ_thio_ly O-suc 40.8 2.4E+02 0.0053 24.5 9.9 36 53-94 53-88 (382)
147 PF01973 MAF_flag10: Protein o 40.8 36 0.00078 25.8 3.4 28 75-102 135-163 (170)
148 cd08345 Fosfomycin_RP Fosfomyc 40.6 65 0.0014 21.8 4.4 42 108-149 67-108 (113)
149 PRK00436 argC N-acetyl-gamma-g 40.0 2E+02 0.0043 24.7 8.1 37 167-207 65-101 (343)
150 cd04868 ACT_AK-like ACT domain 39.7 75 0.0016 18.3 4.9 32 108-139 16-47 (60)
151 COG0436 Aspartate/tyrosine/aro 39.5 52 0.0011 28.9 4.6 48 157-204 150-203 (393)
152 PRK09331 Sep-tRNA:Cys-tRNA syn 38.8 2.6E+02 0.0056 24.1 10.8 36 170-205 158-196 (387)
153 COG0169 AroE Shikimate 5-dehyd 38.7 2.4E+02 0.0052 23.7 9.0 46 74-121 130-175 (283)
154 PRK08176 pdxK pyridoxal-pyrido 38.5 63 0.0014 26.8 4.7 37 168-205 86-127 (281)
155 COG0075 Serine-pyruvate aminot 38.2 2.8E+02 0.0061 24.5 10.2 84 97-206 82-170 (383)
156 cd07242 Glo_EDI_BRP_like_6 Thi 38.0 98 0.0021 21.4 5.2 43 109-151 82-127 (128)
157 PRK04169 geranylgeranylglycery 37.7 1.1E+02 0.0024 24.9 5.9 41 168-208 30-71 (232)
158 COG0219 CspR Predicted rRNA me 36.7 37 0.00079 25.9 2.7 38 82-124 16-53 (155)
159 PRK14106 murD UDP-N-acetylmura 36.7 1.3E+02 0.0029 26.5 6.8 44 77-122 12-55 (450)
160 PRK08573 phosphomethylpyrimidi 36.6 65 0.0014 28.8 4.7 34 171-205 72-105 (448)
161 cd04726 KGPDC_HPS 3-Keto-L-gul 35.9 1.1E+02 0.0023 23.7 5.4 37 169-206 76-113 (202)
162 COG0520 csdA Selenocysteine ly 35.8 94 0.002 27.5 5.6 50 156-205 148-200 (405)
163 PRK10534 L-threonine aldolase; 35.0 1.1E+02 0.0025 25.4 5.9 34 170-203 129-166 (333)
164 KOG3040 Predicted sugar phosph 35.0 1.5E+02 0.0033 24.1 6.0 33 93-126 38-70 (262)
165 TIGR03128 RuMP_HxlA 3-hexulose 34.9 1.2E+02 0.0027 23.5 5.7 37 169-206 75-112 (206)
166 PRK11199 tyrA bifunctional cho 34.9 2.2E+02 0.0048 24.7 7.7 77 99-208 100-178 (374)
167 TIGR03576 pyridox_MJ0158 pyrid 34.8 2.9E+02 0.0063 23.6 11.8 66 53-122 56-121 (346)
168 cd08363 FosB FosB, a fosfomyci 34.8 63 0.0014 23.1 3.7 45 108-152 71-115 (131)
169 PF01408 GFO_IDH_MocA: Oxidore 34.7 28 0.0006 24.3 1.8 110 79-203 9-119 (120)
170 cd04924 ACT_AK-Arch_2 ACT doma 34.6 99 0.0021 18.7 4.2 43 98-140 2-49 (66)
171 cd07238 Glo_EDI_BRP_like_5 Thi 34.5 1.2E+02 0.0026 20.4 5.1 40 109-149 68-108 (112)
172 PF10678 DUF2492: Protein of u 34.4 86 0.0019 21.0 3.9 37 82-120 24-60 (78)
173 PRK05957 aspartate aminotransf 34.4 1.2E+02 0.0027 26.1 6.1 48 158-205 148-201 (389)
174 PF12681 Glyoxalase_2: Glyoxal 34.1 83 0.0018 21.0 4.1 38 109-146 67-104 (108)
175 PRK08045 cystathionine gamma-s 33.8 3.2E+02 0.007 23.8 9.9 37 169-205 136-175 (386)
176 cd07251 Glo_EDI_BRP_like_10 Th 33.4 1.2E+02 0.0027 20.4 5.0 42 108-150 77-119 (121)
177 PRK08064 cystathionine beta-ly 32.9 3.3E+02 0.0072 23.7 11.1 37 169-205 137-176 (390)
178 cd08364 FosX FosX, a fosfomyci 32.7 72 0.0016 22.7 3.7 52 100-151 70-121 (131)
179 TIGR00507 aroE shikimate 5-deh 32.5 2.8E+02 0.0061 22.7 8.5 28 172-201 207-234 (270)
180 PRK13601 putative L7Ae-like ri 32.4 1.6E+02 0.0034 19.8 5.1 36 169-205 23-58 (82)
181 PF02579 Nitro_FeMo-Co: Dinitr 32.4 30 0.00064 23.1 1.5 42 76-123 36-77 (94)
182 TIGR03853 matur_matur probable 32.2 98 0.0021 20.7 3.9 31 89-120 28-58 (77)
183 PF13740 ACT_6: ACT domain; PD 31.8 87 0.0019 20.2 3.7 32 97-128 2-35 (76)
184 cd00615 Orn_deC_like Ornithine 31.7 2.9E+02 0.0064 22.7 10.4 49 157-205 139-191 (294)
185 COG1646 Predicted phosphate-bi 31.7 1.5E+02 0.0033 24.3 5.6 41 167-207 38-80 (240)
186 PF08543 Phos_pyr_kin: Phospho 31.6 1.2E+02 0.0025 24.6 5.1 35 170-205 60-94 (246)
187 cd00757 ThiF_MoeB_HesA_family 31.5 2.7E+02 0.0058 22.2 9.2 35 166-202 107-141 (228)
188 COG0240 GpsA Glycerol-3-phosph 31.4 1.4E+02 0.003 25.8 5.7 28 100-127 4-31 (329)
189 cd01483 E1_enzyme_family Super 31.4 2E+02 0.0044 20.8 7.7 36 165-202 84-119 (143)
190 PF03456 uDENN: uDENN domain; 31.2 89 0.0019 19.5 3.5 40 109-149 20-59 (65)
191 PRK12549 shikimate 5-dehydroge 31.0 3.1E+02 0.0068 22.8 8.8 41 75-118 132-173 (284)
192 cd07245 Glo_EDI_BRP_like_9 Thi 31.0 1E+02 0.0023 20.2 4.2 36 110-146 76-111 (114)
193 PRK09276 LL-diaminopimelate am 30.8 85 0.0018 26.9 4.5 37 169-205 165-207 (385)
194 PF07505 Gp37_Gp68: Phage prot 30.8 1.3E+02 0.0028 25.0 5.3 38 166-203 184-227 (261)
195 PRK08664 aspartate-semialdehyd 30.6 3.5E+02 0.0075 23.2 8.7 36 167-206 73-108 (349)
196 PF13899 Thioredoxin_7: Thiore 30.4 51 0.0011 21.5 2.4 22 186-207 6-27 (82)
197 cd04918 ACT_AK1-AT_2 ACT domai 30.2 1.4E+02 0.003 18.5 5.2 32 109-140 17-48 (65)
198 PRK14038 ADP-dependent glucoki 30.1 4.2E+02 0.0091 24.0 12.0 30 74-105 105-134 (453)
199 cd07241 Glo_EDI_BRP_like_3 Thi 30.0 1.4E+02 0.0029 20.3 4.8 45 103-147 78-122 (125)
200 PF00266 Aminotran_5: Aminotra 30.0 3.5E+02 0.0075 23.0 9.3 49 158-206 127-178 (371)
201 TIGR02456 treS_nterm trehalose 29.7 60 0.0013 29.8 3.5 24 182-205 74-97 (539)
202 cd07265 2_3_CTD_N N-terminal d 29.7 1.5E+02 0.0033 20.3 5.0 41 109-149 75-116 (122)
203 PRK13600 putative ribosomal pr 29.4 1.8E+02 0.004 19.6 5.2 36 169-205 28-63 (84)
204 PRK02261 methylaspartate mutas 29.3 1.5E+02 0.0034 21.8 5.1 32 96-127 4-38 (137)
205 PRK12313 glycogen branching en 29.3 59 0.0013 30.5 3.4 24 182-205 218-241 (633)
206 PRK06545 prephenate dehydrogen 29.2 2.5E+02 0.0053 24.2 7.0 93 100-208 3-98 (359)
207 TIGR00687 pyridox_kin pyridoxa 29.2 91 0.002 25.7 4.2 38 168-205 72-113 (286)
208 cd00851 MTH1175 This uncharact 29.2 97 0.0021 20.9 3.8 38 80-123 50-87 (103)
209 cd07261 Glo_EDI_BRP_like_11 Th 28.8 1.4E+02 0.003 20.2 4.6 40 108-148 72-111 (114)
210 TIGR03537 DapC succinyldiamino 28.6 94 0.002 26.3 4.3 48 158-205 124-177 (350)
211 cd04870 ACT_PSP_1 CT domains f 28.5 83 0.0018 20.2 3.1 29 99-127 1-31 (75)
212 PRK07777 aminotransferase; Val 28.5 3.8E+02 0.0082 22.9 10.1 47 158-204 147-199 (387)
213 COG2518 Pcm Protein-L-isoaspar 28.4 1.6E+02 0.0034 23.7 5.2 59 73-135 75-133 (209)
214 cd07240 ED_TypeI_classII_N N-t 28.3 1.6E+02 0.0036 19.7 4.9 43 108-150 70-112 (117)
215 TIGR01850 argC N-acetyl-gamma- 28.2 3.9E+02 0.0084 23.0 8.3 35 168-206 66-100 (346)
216 PRK07681 aspartate aminotransf 28.1 97 0.0021 26.8 4.4 36 169-204 165-206 (399)
217 TIGR02356 adenyl_thiF thiazole 28.1 2.9E+02 0.0064 21.6 7.8 35 166-202 107-141 (202)
218 cd04922 ACT_AKi-HSDH-ThrA_2 AC 28.0 79 0.0017 19.2 2.9 43 98-140 2-49 (66)
219 TIGR03540 DapC_direct LL-diami 28.0 90 0.002 26.8 4.1 46 159-204 153-204 (383)
220 KOG1145 Mitochondrial translat 27.8 2.9E+02 0.0064 25.9 7.3 109 93-205 149-261 (683)
221 COG2893 ManX Phosphotransferas 27.8 71 0.0015 24.0 3.0 29 74-103 65-93 (143)
222 PRK13580 serine hydroxymethylt 27.6 1.2E+02 0.0025 27.8 4.8 127 75-205 115-256 (493)
223 COG2179 Predicted hydrolase of 27.5 3E+02 0.0065 21.4 7.6 70 53-130 48-117 (175)
224 TIGR02355 moeB molybdopterin s 27.5 3.3E+02 0.0073 22.0 9.0 35 166-202 110-144 (240)
225 COG1358 RPL8A Ribosomal protei 27.4 1.6E+02 0.0034 21.3 4.6 36 170-205 43-78 (116)
226 PRK09147 succinyldiaminopimela 27.2 99 0.0022 26.7 4.3 46 158-203 154-205 (396)
227 PF03266 NTPase_1: NTPase; In 27.1 2.8E+02 0.0061 21.1 6.4 93 110-202 17-130 (168)
228 TIGR02403 trehalose_treC alpha 27.1 69 0.0015 29.5 3.4 25 182-206 73-97 (543)
229 PRK05764 aspartate aminotransf 27.1 96 0.0021 26.6 4.2 36 169-204 163-204 (393)
230 PRK13355 bifunctional HTH-doma 26.9 1.2E+02 0.0025 27.6 4.8 36 169-204 280-321 (517)
231 cd06502 TA_like Low-specificit 26.9 1.6E+02 0.0034 24.5 5.3 35 170-204 127-166 (338)
232 PRK06327 dihydrolipoamide dehy 26.8 4.3E+02 0.0094 23.6 8.4 51 73-124 185-242 (475)
233 PRK07417 arogenate dehydrogena 26.8 1.5E+02 0.0032 24.5 5.1 22 100-121 3-24 (279)
234 cd07247 SgaA_N_like N-terminal 26.7 1.9E+02 0.004 19.4 4.9 47 99-147 64-110 (114)
235 PF00218 IGPS: Indole-3-glycer 26.4 1.2E+02 0.0027 25.0 4.4 48 159-206 120-167 (254)
236 PRK09441 cytoplasmic alpha-amy 26.2 83 0.0018 28.3 3.7 24 182-205 79-102 (479)
237 TIGR00065 ftsZ cell division p 26.2 1.7E+02 0.0038 25.3 5.5 110 74-200 21-134 (349)
238 PRK05942 aspartate aminotransf 26.2 97 0.0021 26.8 4.0 48 158-205 158-211 (394)
239 cd04919 ACT_AK-Hom3_2 ACT doma 26.1 1.6E+02 0.0035 17.9 4.8 43 98-140 2-49 (66)
240 PLN00196 alpha-amylase; Provis 26.0 85 0.0018 28.0 3.6 24 182-205 90-113 (428)
241 PF15084 DUF4550: Domain of un 26.0 49 0.0011 23.2 1.7 20 5-25 10-29 (99)
242 PRK10933 trehalose-6-phosphate 26.0 71 0.0015 29.5 3.2 24 182-205 79-102 (551)
243 PF00142 Fer4_NifH: 4Fe-4S iro 26.0 81 0.0018 26.4 3.2 39 82-121 17-64 (273)
244 COG3589 Uncharacterized conser 25.9 87 0.0019 27.1 3.5 38 170-207 29-72 (360)
245 cd08351 ChaP_like ChaP, an enz 25.9 2.1E+02 0.0046 19.7 5.2 41 109-149 71-118 (123)
246 PF08659 KR: KR domain; Inter 25.9 1.2E+02 0.0027 23.0 4.2 52 78-129 9-61 (181)
247 TIGR02402 trehalose_TreZ malto 25.7 81 0.0018 29.1 3.5 24 182-205 158-181 (542)
248 PRK07269 cystathionine gamma-s 25.3 81 0.0018 27.3 3.3 37 169-205 135-174 (364)
249 TIGR00334 5S_RNA_mat_M5 ribonu 25.1 1.2E+02 0.0027 23.6 3.9 35 170-205 22-57 (174)
250 PRK04101 fosfomycin resistance 24.8 1.5E+02 0.0032 21.2 4.3 42 109-150 76-117 (139)
251 PRK08068 transaminase; Reviewe 24.6 1.2E+02 0.0027 26.0 4.4 36 169-204 166-207 (389)
252 cd04911 ACT_AKiii-YclM-BS_1 AC 24.5 1.5E+02 0.0032 19.7 3.7 32 108-141 17-48 (76)
253 PRK15394 4-deoxy-4-formamido-L 24.4 1.2E+02 0.0026 25.6 4.1 34 82-116 20-53 (296)
254 PRK09505 malS alpha-amylase; R 24.4 82 0.0018 30.0 3.4 24 182-205 290-313 (683)
255 PRK06108 aspartate aminotransf 24.3 4.4E+02 0.0095 22.3 9.9 35 170-204 158-198 (382)
256 PRK13018 cell division protein 24.2 1.8E+02 0.004 25.5 5.3 111 74-200 32-145 (378)
257 PRK11869 2-oxoacid ferredoxin 24.2 4.3E+02 0.0093 22.1 10.4 123 80-206 63-192 (280)
258 PRK05402 glycogen branching en 24.1 79 0.0017 30.3 3.2 23 183-205 314-336 (726)
259 cd07235 MRD Mitomycin C resist 24.1 2.4E+02 0.0052 19.2 5.3 39 109-148 80-119 (122)
260 PRK04296 thymidine kinase; Pro 24.0 2E+02 0.0043 22.2 5.1 33 170-202 78-111 (190)
261 cd00609 AAT_like Aspartate ami 24.0 4E+02 0.0087 21.8 9.6 36 170-205 132-173 (350)
262 PF13241 NAD_binding_7: Putati 23.9 1.6E+02 0.0035 20.2 4.1 34 167-202 57-90 (103)
263 PF02153 PDH: Prephenate dehyd 23.8 1.5E+02 0.0033 24.1 4.6 40 166-208 41-82 (258)
264 PLN02361 alpha-amylase 23.4 1E+02 0.0022 27.3 3.6 24 182-205 74-97 (401)
265 cd02071 MM_CoA_mut_B12_BD meth 23.4 2.1E+02 0.0046 20.3 4.8 29 99-127 3-34 (122)
266 COG1712 Predicted dinucleotide 23.3 2.4E+02 0.0052 23.2 5.3 106 99-205 2-120 (255)
267 PRK09265 aminotransferase AlaT 23.2 1.5E+02 0.0031 25.8 4.6 35 169-203 167-207 (404)
268 PRK09330 cell division protein 23.2 2.3E+02 0.0049 25.0 5.7 109 74-200 17-130 (384)
269 PRK01076 L-rhamnose isomerase; 23.2 79 0.0017 28.0 2.8 24 184-207 113-136 (419)
270 TIGR03538 DapC_gpp succinyldia 23.2 1.1E+02 0.0025 26.3 3.9 47 158-204 153-205 (393)
271 cd08355 Glo_EDI_BRP_like_14 Th 23.0 2.3E+02 0.0049 19.4 4.9 40 110-149 80-119 (122)
272 PRK00451 glycine dehydrogenase 23.0 4.8E+02 0.01 22.9 7.9 33 170-202 204-238 (447)
273 PRK05756 pyridoxamine kinase; 22.9 1.5E+02 0.0032 24.4 4.4 38 168-205 72-113 (286)
274 TIGR01515 branching_enzym alph 22.8 94 0.002 29.1 3.4 24 182-205 204-227 (613)
275 PRK11478 putative lyase; Provi 22.8 2.6E+02 0.0055 19.2 5.1 38 110-147 87-124 (129)
276 PF09140 MipZ: ATPase MipZ; I 22.7 79 0.0017 26.3 2.6 32 82-117 18-49 (261)
277 PRK12616 pyridoxal kinase; Rev 22.6 1.6E+02 0.0036 24.1 4.6 36 170-206 74-110 (270)
278 cd08354 Glo_EDI_BRP_like_13 Th 22.6 2.5E+02 0.0055 18.9 5.3 39 110-149 81-119 (122)
279 PRK07818 dihydrolipoamide dehy 22.5 2.2E+02 0.0047 25.4 5.6 51 73-124 174-231 (466)
280 PRK12413 phosphomethylpyrimidi 22.3 1.3E+02 0.0028 24.2 3.8 37 170-206 68-106 (253)
281 TIGR01748 rhaA L-rhamnose isom 22.2 85 0.0018 27.8 2.8 95 110-207 20-132 (414)
282 cd07263 Glo_EDI_BRP_like_16 Th 22.2 2.4E+02 0.0053 18.6 4.8 39 110-149 79-117 (119)
283 PRK13813 orotidine 5'-phosphat 22.2 2.5E+02 0.0054 22.0 5.4 36 170-206 80-117 (215)
284 PRK14619 NAD(P)H-dependent gly 21.9 4.7E+02 0.01 21.8 8.0 25 100-124 7-31 (308)
285 PRK05839 hypothetical protein; 21.9 2E+02 0.0043 24.6 5.1 37 168-204 153-195 (374)
286 cd01494 AAT_I Aspartate aminot 21.9 3E+02 0.0066 19.6 8.7 37 169-205 91-130 (170)
287 PRK12414 putative aminotransfe 21.8 1.3E+02 0.0027 26.0 3.9 47 158-204 150-202 (384)
288 COG3830 ACT domain-containing 21.8 1.1E+02 0.0024 21.1 2.8 31 97-127 3-35 (90)
289 PF01321 Creatinase_N: Creatin 21.7 2.8E+02 0.0061 19.1 6.2 88 110-206 3-101 (132)
290 PRK08912 hypothetical protein; 21.7 1.3E+02 0.0028 25.8 4.0 36 169-204 158-199 (387)
291 COG0287 TyrA Prephenate dehydr 21.7 4.3E+02 0.0093 22.1 6.8 94 99-208 5-101 (279)
292 cd08352 Glo_EDI_BRP_like_1 Thi 21.6 2.6E+02 0.0057 18.7 5.1 38 110-147 84-121 (125)
293 PRK10565 putative carbohydrate 21.6 1.6E+02 0.0034 26.9 4.6 38 168-205 318-355 (508)
294 PF03841 SelA: L-seryl-tRNA se 21.6 71 0.0015 28.0 2.2 22 185-206 158-179 (367)
295 PRK14727 putative mercuric red 21.5 2.2E+02 0.0049 25.5 5.5 50 73-124 190-246 (479)
296 PRK06348 aspartate aminotransf 21.5 1.6E+02 0.0034 25.3 4.5 36 169-204 161-202 (384)
297 PF00150 Cellulase: Cellulase 21.5 1E+02 0.0022 24.8 3.1 23 184-206 62-84 (281)
298 PRK07366 succinyldiaminopimela 21.5 1.5E+02 0.0032 25.5 4.3 35 169-203 164-204 (388)
299 cd06453 SufS_like Cysteine des 21.5 1.8E+02 0.0038 24.7 4.7 48 158-205 127-177 (373)
300 TIGR01768 GGGP-family geranylg 21.5 1.9E+02 0.0041 23.4 4.5 40 169-208 26-66 (223)
301 cd06587 Glo_EDI_BRP_like This 21.4 2.3E+02 0.0051 18.0 6.5 48 97-146 62-109 (112)
302 TIGR03235 DNA_S_dndA cysteine 21.3 2.4E+02 0.0052 23.8 5.5 37 169-205 137-176 (353)
303 PF13580 SIS_2: SIS domain; PD 21.3 1.8E+02 0.0038 21.2 4.1 34 168-202 101-135 (138)
304 cd07233 Glyoxalase_I Glyoxalas 21.3 2.1E+02 0.0046 19.2 4.4 48 97-147 71-118 (121)
305 TIGR02326 transamin_PhnW 2-ami 21.2 5E+02 0.011 21.8 8.8 50 74-126 57-107 (363)
306 PRK15447 putative protease; Pr 21.2 2E+02 0.0043 24.3 4.8 37 169-205 27-69 (301)
307 KOG3974 Predicted sugar kinase 21.2 1.4E+02 0.003 25.1 3.7 41 165-205 96-140 (306)
308 cd05014 SIS_Kpsf KpsF-like pro 21.1 2.5E+02 0.0053 19.6 4.8 27 97-123 3-29 (128)
309 cd02009 TPP_SHCHC_synthase Thi 21.0 3.7E+02 0.0081 20.3 7.8 23 182-204 150-172 (175)
310 PRK13602 putative ribosomal pr 21.0 2.6E+02 0.0057 18.5 4.7 36 169-205 26-61 (82)
311 cd07254 Glo_EDI_BRP_like_20 Th 20.8 2.4E+02 0.0052 19.1 4.6 40 110-149 73-114 (120)
312 TIGR01532 E4PD_g-proteo D-eryt 20.8 2E+02 0.0044 24.6 4.8 43 160-206 80-122 (325)
313 PRK06460 hypothetical protein; 20.7 5.5E+02 0.012 22.1 10.8 35 170-204 130-167 (376)
314 cd06451 AGAT_like Alanine-glyo 20.7 5E+02 0.011 21.7 10.1 36 170-205 124-162 (356)
315 COG0143 MetG Methionyl-tRNA sy 20.7 1.1E+02 0.0024 28.4 3.4 30 92-123 40-69 (558)
316 PRK09082 methionine aminotrans 20.6 1.6E+02 0.0034 25.4 4.2 36 169-204 162-203 (386)
317 PRK13957 indole-3-glycerol-pho 20.5 1.8E+02 0.004 23.9 4.3 47 160-206 114-160 (247)
318 TIGR01851 argC_other N-acetyl- 20.4 2.1E+02 0.0045 24.5 4.7 36 167-206 46-81 (310)
319 PRK06290 aspartate aminotransf 20.4 1.6E+02 0.0035 25.8 4.3 36 169-204 178-219 (410)
320 PF02775 TPP_enzyme_C: Thiamin 20.4 1E+02 0.0022 22.7 2.6 33 170-204 121-153 (153)
321 PRK14012 cysteine desulfurase; 20.4 3.3E+02 0.0071 23.6 6.2 48 158-205 132-182 (404)
322 COG2257 Uncharacterized homolo 20.3 82 0.0018 21.7 1.9 22 183-204 31-52 (92)
323 PRK13748 putative mercuric red 20.3 2.4E+02 0.0052 25.7 5.6 50 74-124 273-328 (561)
324 TIGR02130 dapB_plant dihydrodi 20.3 5.2E+02 0.011 21.7 7.7 35 171-207 69-103 (275)
325 PF02700 PurS: Phosphoribosylf 20.3 1.1E+02 0.0024 20.5 2.5 18 105-122 14-31 (80)
326 PTZ00072 40S ribosomal protein 20.2 75 0.0016 24.0 1.8 39 82-121 30-77 (148)
327 cd07944 DRE_TIM_HOA_like 4-hyd 20.1 1.9E+02 0.0041 23.9 4.4 35 170-204 95-129 (266)
328 TIGR02964 xanthine_xdhC xanthi 20.1 1.1E+02 0.0025 24.9 3.1 56 78-134 169-225 (246)
329 PRK06207 aspartate aminotransf 20.1 1.8E+02 0.0039 25.3 4.6 36 169-204 177-218 (405)
330 COG1587 HemD Uroporphyrinogen- 20.1 2.1E+02 0.0046 23.1 4.7 109 82-198 86-199 (248)
331 COG1058 CinA Predicted nucleot 20.0 3.3E+02 0.0071 22.6 5.7 46 82-130 23-68 (255)
No 1
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=1.6e-32 Score=240.46 Aligned_cols=194 Identities=23% Similarity=0.347 Sum_probs=171.4
Q ss_pred ccccccCCCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHH
Q 028446 7 IINREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTI 86 (209)
Q Consensus 7 ~~~~~~~~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a 86 (209)
-|.|| ..+.+|+++| |+++|+.+.++++||+++.+++|.+++++.|++..|+.++.... ......+||+++|+|
T Consensus 26 ~~~~~-~~~~~v~g~G-NaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~----~~~~~~~GGsaaNtA 99 (434)
T PRK15074 26 QPENE-TSRTYIVGID-QTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNN----LITHEFAGGTIGNTL 99 (434)
T ss_pred ccccC-CCCCcEEEeC-CceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhcc----ccccccCCCHHHHHH
Confidence 45555 3578999999 99999999999999999999999999999999999999986421 014667999999999
Q ss_pred HHHHhhcC-CCeEEEEEecCC-hhHHHHHHHHH--hCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCccc
Q 028446 87 RGLSVGFG-VPCGLIGAYGDD-QQGQLFVSNMQ--FSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE 162 (209)
Q Consensus 87 ~~la~rlG-~~~~~ig~vG~D-~~G~~i~~~L~--~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~ 162 (209)
++++ +|| .++.|+|+||+| .+|+++++.|+ +.||+++++...+++|+.|+++++++|+|+|++|+|++..|++++
T Consensus 100 ~~lA-rLGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~ed 178 (434)
T PRK15074 100 HNYS-VLADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQLRPES 178 (434)
T ss_pred HHHH-HcCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhcCChhH
Confidence 9999 896 999999999999 79999999997 689999998766568999999999999999999999999999999
Q ss_pred CchhhhCCccEEEEe-cccC-----C-HHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 163 LIAEDVKGSKWLVLR-FGMF-----N-FEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 163 i~~~~l~~~~~v~~~-~~~~-----~-~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++...+++++++|++ +.+. + .+.+.++++.|+++|++|+||+++.
T Consensus 179 ld~~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~ 230 (434)
T PRK15074 179 IPEDVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTK 230 (434)
T ss_pred CCHhHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcch
Confidence 987789999999999 5442 2 5778899999999999999999976
No 2
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.6e-32 Score=234.18 Aligned_cols=204 Identities=76% Similarity=1.197 Sum_probs=177.2
Q ss_pred CCCcccccccccCCCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccC---CCCCCceEe
Q 028446 1 MGAEHLIINREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHIL---DEPSPIKTI 77 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~ 77 (209)
|||..-.-+. +++++|+++|+|+++|+.+.++++||+++.+++|.+++++++++++|+.++.++.. ++.......
T Consensus 7 ~~~~~~~~~~--~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (367)
T PLN02379 7 MGAAGALGDG--PRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTM 84 (367)
T ss_pred CCcccCCCCC--CCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceec
Confidence 4554444443 48899999966999999999999999999999999999999999999999875431 112347788
Q ss_pred cCChHHHHHHHHHhh-cCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCC
Q 028446 78 AGGSVTNTIRGLSVG-FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAV 156 (209)
Q Consensus 78 ~GG~~~N~a~~la~r-lG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~ 156 (209)
+||+++|++++++ + ||.++.++|+||+|.+|+++++.|++.||++.++...+++|+.|+++++++|+|++..+.++..
T Consensus 85 ~GGsa~N~a~~la-~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~ 163 (367)
T PLN02379 85 AGGSVANTIRGLS-AGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAV 163 (367)
T ss_pred CCCHHHHHHHHHH-HhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccc
Confidence 9999999999998 5 9999999999999999999999999999999888665568999999999999999988888877
Q ss_pred CCCcccCchhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 157 KIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 157 ~l~~~~i~~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
.++++++..+.+++++|+|+++.+.+.+.+.++++.|+++|++|++|+++.
T Consensus 164 ~l~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~ 214 (367)
T PLN02379 164 KLQADELTKEDFKGSKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASF 214 (367)
T ss_pred cCChhHCCHHHHhcCCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccch
Confidence 888888887788999999999644467889999999999999999999864
No 3
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.98 E-value=7.5e-31 Score=230.35 Aligned_cols=196 Identities=24% Similarity=0.366 Sum_probs=175.9
Q ss_pred cccccccccCCCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHH
Q 028446 4 EHLIINREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVT 83 (209)
Q Consensus 4 ~~~~~~~~~~~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~ 83 (209)
.+.+|+..++.+++|+++| ++++|+++.++++|++++.++++++++++.++..++++++.. ..+...+||+++
T Consensus 58 ~~~~~~~~~~~~~~vl~iG-~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~------~~~~~~~GG~~~ 130 (426)
T PLN02813 58 FGPIPEKAVPERWDVLGLG-QAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDG------CSYKASAGGSLS 130 (426)
T ss_pred cCCCCcccCCCcceEEEeC-CceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhc------cCceEecCcHHH
Confidence 4678999999999999999 999999999999999998888889999999999999998764 478899999999
Q ss_pred HHHHHHHhhcC--------CCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcC
Q 028446 84 NTIRGLSVGFG--------VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNA 155 (209)
Q Consensus 84 N~a~~la~rlG--------~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~ 155 (209)
|+|++++ ||| .++.|+|.||+|.+|+++++.|+++||++.++.+.+.+|+.++++++++|+|+++.++|++
T Consensus 131 N~Avala-rLG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga~ 209 (426)
T PLN02813 131 NTLVALA-RLGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTS 209 (426)
T ss_pred HHHHHHH-HhccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCch
Confidence 9999999 899 7999999999999999999999999999988876556899999999999999999999988
Q ss_pred CCCCcccCchhhhCCccEEEEe-ccc-CC--HHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 156 VKIQADELIAEDVKGSKWLVLR-FGM-FN--FEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 156 ~~l~~~~i~~~~l~~~~~v~~~-~~~-~~--~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
..++++++..+.+++++++|++ +.+ .| .+.+.++++.|+++|++|+||+++.
T Consensus 210 ~~l~~~~~~~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~ 265 (426)
T PLN02813 210 STVNYDSCLASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDV 265 (426)
T ss_pred hhCCccccCHHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 7888777766778999999998 432 23 3678889999999999999999874
No 4
>PTZ00247 adenosine kinase; Provisional
Probab=99.95 E-value=1.1e-26 Score=199.23 Aligned_cols=186 Identities=23% Similarity=0.313 Sum_probs=154.2
Q ss_pred cCCCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHh
Q 028446 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (209)
Q Consensus 12 ~~~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~ 91 (209)
++..++|+++| ++++|++++++.+|++++...+|+..+.+ +...++..+.... .+....+||+++|+|++++
T Consensus 2 ~~~~~~i~~iG-~~~~D~~~~v~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-----~~~~~~~GG~~~N~A~~la- 73 (345)
T PTZ00247 2 SSAPKKLLGFG-NPLLDISAHVSDEFLEKYGLELGSAILAE-EKQLPIFEELESI-----PNVSYVPGGSALNTARVAQ- 73 (345)
T ss_pred CCCCceEEEEC-CceEEEEEeeCHHHHHHcCCCCCceeech-HHHHHHHHHHHhc-----cCceecCCCHHHHHHHHHH-
Confidence 46789999999 99999999999999999733557666665 4444555554331 3678999999999999998
Q ss_pred hcC---C-CeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCch--
Q 028446 92 GFG---V-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-- 165 (209)
Q Consensus 92 rlG---~-~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~-- 165 (209)
||| . ++.|+|+||+|.+|+++++.|+++||+++++...+.+|+.+++++++ |+|+++.+++++..+++++++.
T Consensus 74 ~lg~~g~~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~~-~~r~~~~~~ga~~~l~~~~i~~~~ 152 (345)
T PTZ00247 74 WMLQAPKGFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVCG-KERSLVANLGAANHLSAEHMQSHA 152 (345)
T ss_pred HHhcCCCCcEEEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEcC-CCcccccCcchhhcCChHHcCcHH
Confidence 785 4 99999999999999999999999999998876433489999999874 8999999999988899888874
Q ss_pred --hhhCCccEEEEec-cc-CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 166 --EDVKGSKWLVLRF-GM-FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 166 --~~l~~~~~v~~~~-~~-~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+.+++++++|+++ .+ .+.+.+.++++.|+++|++|+||+++
T Consensus 153 ~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~ 197 (345)
T PTZ00247 153 VQEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSA 197 (345)
T ss_pred HHHHHhhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCc
Confidence 2678999999994 22 26788899999999999999999874
No 5
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.95 E-value=5.4e-26 Score=192.02 Aligned_cols=180 Identities=34% Similarity=0.535 Sum_probs=151.8
Q ss_pred ceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC
Q 028446 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~ 95 (209)
.+|+++| ++++|++++++......+.+.+|++...+.+...+..+. .+....+||+++|+|++++ |||.
T Consensus 2 ~~v~~vG-~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~GG~~~N~A~~la-~LG~ 70 (312)
T cd01168 2 YDVLGLG-NALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAK---------LPVKYIAGGSAANTIRGAA-ALGG 70 (312)
T ss_pred ceEEEEC-CCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHh---------cCccccCCCHHHHHHHHHH-HhcC
Confidence 4699999 999999999965444444445566666666665555432 1578899999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEE
Q 028446 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (209)
Q Consensus 96 ~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~ 175 (209)
++.++|.+|+|.+|+.+++.|+++||+++++...+.+|+.++++++++|+|+++.+++++..+++++++...+++++++|
T Consensus 71 ~~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 150 (312)
T cd01168 71 SAAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDWSLLAKAKYLY 150 (312)
T ss_pred CeEEEEEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCHHHHccCCEEE
Confidence 99999999999999999999999999999888654589999999998999999999998888999888877889999999
Q ss_pred Eec-cc-CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 176 LRF-GM-FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 176 ~~~-~~-~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++. .+ .+.+.+..+++.++++|++|+||+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~ 183 (312)
T cd01168 151 LEGYLLTVPPEAILLAAEHAKENGVKIALNLSA 183 (312)
T ss_pred EEEEecCCCHHHHHHHHHHHHHcCCEEEEeCCc
Confidence 994 22 24578889999999999999999974
No 6
>PRK11142 ribokinase; Provisional
Probab=99.94 E-value=5.6e-25 Score=185.03 Aligned_cols=162 Identities=21% Similarity=0.340 Sum_probs=139.8
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| .+++|+++.+ +++|.+ +..... .+....+||++.|+|++|+ +||.+
T Consensus 4 ~i~~iG-~~~~D~~~~~-----~~~p~~-~~~~~~--------------------~~~~~~~GG~~~Nva~~la-~lG~~ 55 (306)
T PRK11142 4 KLVVLG-SINADHVLNL-----ESFPRP-GETLTG--------------------RHYQVAFGGKGANQAVAAA-RLGAD 55 (306)
T ss_pred cEEEEC-CceeeEEEEe-----CCCCCC-CCeeEe--------------------ccceecCCCcHHHHHHHHH-hcCCc
Confidence 699999 9999999998 667754 332221 3678899999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCcccCc--hhhhCCccE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELI--AEDVKGSKW 173 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~--~~~l~~~~~ 173 (209)
+.++|.+|+|.+|+.+++.|+++||+++++...++ +|+.++++++++|+|+++.++++...+++++++ .+.+.++++
T Consensus 56 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (306)
T PRK11142 56 IAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANADA 135 (306)
T ss_pred EEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCCE
Confidence 99999999999999999999999999999987766 899999999989999999999987788887775 256789999
Q ss_pred EEEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 174 v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+|++... +.+.+.++++.|+++|++++||+++.
T Consensus 136 v~~~~~~-~~~~~~~~~~~a~~~g~~v~~d~~~~ 168 (306)
T PRK11142 136 LLMQLET-PLETVLAAAKIAKQHGTKVILNPAPA 168 (306)
T ss_pred EEEeCCC-CHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 9998543 66778899999999999999999853
No 7
>PTZ00292 ribokinase; Provisional
Probab=99.93 E-value=5.4e-25 Score=187.04 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=143.3
Q ss_pred cccccccCCCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHH
Q 028446 6 LIINREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85 (209)
Q Consensus 6 ~~~~~~~~~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~ 85 (209)
--|++| .+++|+++| .+++|+++.+ +++|.+. ..... ......+||++.|+
T Consensus 8 ~~~~~~--~~~~vlviG-~~~vD~~~~~-----~~~~~~~-~~~~~--------------------~~~~~~~GG~~~Nv 58 (326)
T PTZ00292 8 ASHGGE--AEPDVVVVG-SSNTDLIGYV-----DRMPQVG-ETLHG--------------------TSFHKGFGGKGANQ 58 (326)
T ss_pred hcccCC--CCCCEEEEc-cceeeEEEec-----CCCCCCC-Cceee--------------------cCceeCCCCcHHHH
Confidence 345666 567799999 9999999998 6677553 22221 35788999999999
Q ss_pred HHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEc-CCCCeeEEecCCcCCCCCcccC
Q 028446 86 IRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVD-ASGNRTMRPCLSNAVKIQADEL 163 (209)
Q Consensus 86 a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~-~~G~rt~~~~~ga~~~l~~~~i 163 (209)
|++|+ |||.++.++|.+|+|++|+.+++.|++.||+++++...+. +|+.++++++ ++|+|+++.++++...++++++
T Consensus 59 A~~la-~lG~~~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 137 (326)
T PTZ00292 59 AVMAS-KLGAKVAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMV 137 (326)
T ss_pred HHHHH-HcCCCeEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHH
Confidence 99999 8999999999999999999999999999999999976654 8999999998 7899999999988778888777
Q ss_pred ch--hhhCC-ccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 164 IA--EDVKG-SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 164 ~~--~~l~~-~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+. ..+.+ +++++++... +.+...++++.++++|++++||+++.
T Consensus 138 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~ 183 (326)
T PTZ00292 138 DAQTDNIQNICKYLICQNEI-PLETTLDALKEAKERGCYTVFNPAPA 183 (326)
T ss_pred HHHHHHhhhhCCEEEECCCC-CHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 53 34667 9999988544 66778889999999999999999853
No 8
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.93 E-value=9.9e-25 Score=182.17 Aligned_cols=162 Identities=28% Similarity=0.445 Sum_probs=138.3
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| .+++|+++.+ +++|.+ +..... ......+||++.|+|++|+ |||.+
T Consensus 1 ~il~iG-~~~~D~~~~~-----~~~~~~-~~~~~~--------------------~~~~~~~GG~~~NvA~~l~-~lG~~ 52 (292)
T cd01174 1 KVVVVG-SINVDLVTRV-----DRLPKP-GETVLG--------------------SSFETGPGGKGANQAVAAA-RLGAR 52 (292)
T ss_pred CEEEEe-eceeEEEEEe-----cCCCCC-CCcEEe--------------------ccceecCCCcHHHHHHHHH-HcCCc
Confidence 489999 9999999987 566654 322221 3678999999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCcccCch--hhhCCccE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGSKW 173 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~--~~l~~~~~ 173 (209)
+.++|.+|+|.+|+.+++.|++.||+++++.+.+. +|+.++++++.+|+|+++.++++...+++++++. +.++++++
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T cd01174 53 VAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADV 132 (292)
T ss_pred eEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCE
Confidence 99999999999999999999999999999966654 8999999999889999998888877777766653 46789999
Q ss_pred EEEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 174 v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++++... +.+.+..+++.++++|++++||+++.
T Consensus 133 v~~~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~ 165 (292)
T cd01174 133 LLLQLEI-PLETVLAALRAARRAGVTVILNPAPA 165 (292)
T ss_pred EEEeCCC-CHHHHHHHHHHHHhcCCEEEEeCCCc
Confidence 9999654 66788899999999999999999864
No 9
>PLN02967 kinase
Probab=99.92 E-value=4.5e-24 Score=191.62 Aligned_cols=174 Identities=18% Similarity=0.193 Sum_probs=137.6
Q ss_pred CCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhc
Q 028446 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (209)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rl 93 (209)
.+..|+|+| .+++|++..... ...+ ..+ + +-..+..+ -|++..+...+||+++|+|++|+ ||
T Consensus 195 ~~~~V~~iG-e~l~D~~p~g~~--~~~l--~~~-------~----~~~~~~~~-~s~~~~~~~~~GGa~aNVAvaLA-RL 256 (581)
T PLN02967 195 WPPLVCCFG-AAQHAFVPSGRP--ANRL--LDY-------E----IHERMKDA-FWAPEKFVRAPGGSAGGVAIALA-SL 256 (581)
T ss_pred CCCeEEEEC-chhheecccCcc--chhh--hhc-------c----cccccccc-ccCccceeeecCcHHHHHHHHHH-HC
Confidence 356799999 999999764210 0000 000 0 00000000 04567899999999999999999 89
Q ss_pred CCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEE-ecCCcCCCCCcccCchhhhCCc
Q 028446 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR-PCLSNAVKIQADELIAEDVKGS 171 (209)
Q Consensus 94 G~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~-~~~ga~~~l~~~~i~~~~l~~~ 171 (209)
|.++.|+|+||+|.+|+++++.|+++||+++++.+.++ +|+.++++++++|+|+++ .+++++..|++++++...+.++
T Consensus 257 G~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~~~l~~A 336 (581)
T PLN02967 257 GGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINIDVLKEA 336 (581)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCHhHhcCC
Confidence 99999999999999999999999999999999988766 899999999999998875 4678888899888887788999
Q ss_pred cEEEEec-cc-C--CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 172 KWLVLRF-GM-F--NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 172 ~~v~~~~-~~-~--~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+++|+++ .+ . +.+.+.++++.|+++|++|+||||
T Consensus 337 ~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpN 374 (581)
T PLN02967 337 KMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLN 374 (581)
T ss_pred CEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECC
Confidence 9999993 22 1 257788999999999999999998
No 10
>PLN02323 probable fructokinase
Probab=99.92 E-value=3.6e-24 Score=182.38 Aligned_cols=162 Identities=23% Similarity=0.348 Sum_probs=135.5
Q ss_pred CCCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhh
Q 028446 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (209)
Q Consensus 13 ~~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~r 92 (209)
+++.+|+++| ++++|+++.+ +++|... ...+...+||+++|+|++++ |
T Consensus 8 ~~~~~i~~iG-~~~vD~~~~~-----~~~~~~~-------------------------~~~~~~~~GG~~~NvA~~la-~ 55 (330)
T PLN02323 8 AESSLVVCFG-EMLIDFVPTV-----SGVSLAE-------------------------APAFKKAPGGAPANVAVGIS-R 55 (330)
T ss_pred CCCCcEEEec-hhhhhhccCC-----CCCCccc-------------------------ccceeecCCChHHHHHHHHH-h
Confidence 3678899999 9999999876 3444321 12577899999999999999 8
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecC--CcCCCCCcccCchhhhC
Q 028446 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDVK 169 (209)
Q Consensus 93 lG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~--ga~~~l~~~~i~~~~l~ 169 (209)
||.++.++|.+|+|.+|+++++.|++.||+++++.+.++ +|+.++++++++|+|++++++ ++...+++++++...++
T Consensus 56 LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (330)
T PLN02323 56 LGGSSAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIR 135 (330)
T ss_pred cCCceeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHc
Confidence 999999999999999999999999999999999988776 899999999889999988774 55557888888877788
Q ss_pred CccEEEEec-cc-C--CHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 170 GSKWLVLRF-GM-F--NFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~~-~~-~--~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+++++|++. .+ . +......+++.+++.|++|+|||+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 176 (330)
T PLN02323 136 KAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNL 176 (330)
T ss_pred cCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCC
Confidence 999999883 22 1 1245678899999999999999974
No 11
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.91 E-value=2.2e-23 Score=174.10 Aligned_cols=161 Identities=19% Similarity=0.272 Sum_probs=130.6
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| ++++|++.++ +++|.++ .... .......+|| +.|+|++++ |||.+
T Consensus 1 ~i~~iG-~~~~D~i~~~-----~~~~~~~-~~~~--------------------~~~~~~~~GG-~~Nva~~l~-~lG~~ 51 (289)
T cd01944 1 KVLVIG-AAVVDIVLDV-----DKLPASG-GDIE--------------------AKSKSYVIGG-GFNVMVAAS-RLGIP 51 (289)
T ss_pred CeEEEc-ceeEEEEeec-----ccCCCCC-Cccc--------------------cceeeeccCc-HHHHHHHHH-HcCCC
Confidence 489999 9999999998 6676553 2221 1367899999 999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~ 176 (209)
+.++|.+|+|.+|+++++.|++.||+++++.+....|+.++++++++|+|+++.+++++..+++++++...+.+++++|+
T Consensus 52 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (289)
T cd01944 52 TVNAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATLTVAPYDYVYL 131 (289)
T ss_pred eEEEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccccCCCCCEEEE
Confidence 99999999999999999999999999999887644788888999989999999998887778877776545788999999
Q ss_pred e-cccC----CHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 177 R-FGMF----NFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 177 ~-~~~~----~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+ +.+. +.+.+.++++.+ +.+++++||+++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~D~~~~ 166 (289)
T cd01944 132 SGYTLASENASKVILLEWLEAL-PAGTTLVFDPGPR 166 (289)
T ss_pred eCccccCcchhHHHHHHHHHhc-cCCCEEEEcCccc
Confidence 9 3331 134455566554 3679999999854
No 12
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.91 E-value=2.9e-23 Score=172.23 Aligned_cols=158 Identities=23% Similarity=0.315 Sum_probs=133.1
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| ++++|+++.+ +++|.... ... ..+....+||++.|+|++++ |||.+
T Consensus 1 ~v~~iG-~~~~D~~~~v-----~~~p~~~~-~~~--------------------~~~~~~~~GG~~~Nva~~l~-~lg~~ 52 (279)
T cd01942 1 DVAVVG-HLNYDIILKV-----ESFPGPFE-SVL--------------------VKDLRREFGGSAGNTAVALA-KLGLS 52 (279)
T ss_pred CEEEEe-cceeeeEeec-----ccCCCCCc-eEe--------------------cceeeecCCcHHHHHHHHHH-HcCCC
Confidence 689999 9999999998 67775422 211 13788999999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~ 175 (209)
+.++|.+|+|.+|+++++.|++.||+++++...++ +|+.++++++++|+|+++.++++...+++++ ....+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (279)
T cd01942 53 PGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-EADPDGLADIVH 131 (279)
T ss_pred ceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-chhhhcccCEEE
Confidence 99999999999999999999999999999965544 8999999999889998887888776777665 455678999999
Q ss_pred EecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 176 ~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++.. + .+.++++.++++|+++++|+++.
T Consensus 132 ~~~~--~--~~~~~~~~~~~~g~~v~~D~~~~ 159 (279)
T cd01942 132 LSSG--P--GLIELARELAAGGITVSFDPGQE 159 (279)
T ss_pred eCCc--h--HHHHHHHHHHHcCCeEEEcchhh
Confidence 9842 2 46678888888999999999853
No 13
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.91 E-value=1.3e-23 Score=186.68 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=133.2
Q ss_pred CceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcC
Q 028446 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (209)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG 94 (209)
+++|+|+| .+++|++...... +..+ .. .++.++.- ..|++..+...+||+++|+|++++ |||
T Consensus 125 ~~~v~~~G-e~liDf~~~~~~~-~~~~--~~------------~~~~~~~~-~~~~~~~f~~~~GGa~aNVAvaLA-RLG 186 (496)
T PLN02543 125 PPLVCCFG-AVQKEFVPTVRVH-DNQM--HP------------DMYSQWKM-LQWDPPEFARAPGGPPSNVAISHV-RLG 186 (496)
T ss_pred CCeEEEeC-hhhhhhcCCCccc-cccc--cc------------cccccccc-ccccCCeeEeccCcHHHHHHHHHH-HCC
Confidence 55699999 9999999864110 0000 00 01111110 013456789999999999999999 999
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEc--CCCCeeEE--ecCCcCCCCCcccCchhhhC
Q 028446 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVD--ASGNRTMR--PCLSNAVKIQADELIAEDVK 169 (209)
Q Consensus 95 ~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~--~~G~rt~~--~~~ga~~~l~~~~i~~~~l~ 169 (209)
.++.|+|+||+|.+|+++++.|+++|||++++.+.++ +|+.+++.++ .+| |.++ ...+++..|++++++...+.
T Consensus 187 ~~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~~~l~ 265 (496)
T PLN02543 187 GRAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNLAVLK 265 (496)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCHhHhC
Confidence 9999999999999999999999999999999998876 8999999884 445 5554 24466667889998877889
Q ss_pred CccEEEEec-cc-CC--HHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 170 GSKWLVLRF-GM-FN--FEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~~-~~-~~--~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+++++|++. .+ .+ .+...++++.|+++|++|+|||+-
T Consensus 266 ~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~ 306 (496)
T PLN02543 266 EARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNL 306 (496)
T ss_pred CCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 999999993 22 22 467889999999999999999983
No 14
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.8e-23 Score=172.75 Aligned_cols=185 Identities=24% Similarity=0.303 Sum_probs=159.2
Q ss_pred CceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcC
Q 028446 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (209)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG 94 (209)
..-.+++| |+++|+...++++||++++++.+....++.+ +..++.++.. .......+||++.|+++.++ +++
T Consensus 6 E~il~G~g-npLLD~~a~Vd~~~L~KygL~~n~ail~d~~-~~~~~~E~~~-----~~~~~~~AGGs~qNt~R~aq-~~~ 77 (343)
T KOG2854|consen 6 EGILVGLG-NPLLDISAVVDDEFLDKYGLKLNDAILADDK-HLGLFDELME-----GFNVKYSAGGSAQNTLRIAQ-WLL 77 (343)
T ss_pred cceeeccC-ccceeeeeccCHHHHHHcCCCCCcceecchh-hHHHHHHHhh-----cccEEecCCchhHHHHHHHH-HHc
Confidence 34567899 9999999999999999999999998888766 6667766543 24789999999999999999 566
Q ss_pred C---CeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCc----hhh
Q 028446 95 V---PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI----AED 167 (209)
Q Consensus 95 ~---~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~----~~~ 167 (209)
. .+.|+|+||+|.+|+++++.+++.||+..+....+.+||.|.++++.++ ||++.+.|++..++.++++ +..
T Consensus 78 ~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~l 156 (343)
T KOG2854|consen 78 QQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWAL 156 (343)
T ss_pred cCCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhhh
Confidence 5 8999999999999999999999999999887776679999999998765 9999999999889888885 347
Q ss_pred hCCccEEEEe-ccc-CCHHHHHHHHHHHHHCCCeEEEeCCCCC
Q 028446 168 VKGSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (209)
Q Consensus 168 l~~~~~v~~~-~~~-~~~~~~~~l~~~a~~~g~~v~~D~~~~~ 208 (209)
++++.++|+. +.+ ..+++++.+.+.|.+.+.+.+++.+...
T Consensus 157 veka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapf 199 (343)
T KOG2854|consen 157 VEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPF 199 (343)
T ss_pred hhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchh
Confidence 8999999999 544 3578899999999999988888887654
No 15
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.91 E-value=6.6e-23 Score=171.50 Aligned_cols=159 Identities=16% Similarity=0.266 Sum_probs=130.9
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| ++++|+++.+ +++|.. +..... ......+||+++|+|++++ |||.+
T Consensus 1 ~v~~iG-~~~vD~~~~v-----~~~p~~-~~~~~~--------------------~~~~~~~GG~a~NvA~~la-~lG~~ 52 (290)
T cd01939 1 AVLCVG-LTVLDFITTV-----DKYPFE-DSDQRT--------------------TNGRWQRGGNASNSCTVLR-LLGLS 52 (290)
T ss_pred CEEEEe-eeeeEEEeee-----cCCCCC-CcceEe--------------------eeeeEecCCCHHHHHHHHH-HcCCc
Confidence 489999 9999999998 667764 332221 2557889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~ 175 (209)
+.++|++|+|++|+++++.|++.||++.++...++ .+..++++++++|+|+++.+.++...+++++++...+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
T cd01939 53 CEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKIDLTQYGWIH 132 (290)
T ss_pred eEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhhhhccCCEEE
Confidence 99999999999999999999999999999876655 56667888888899999888887778888877765568999999
Q ss_pred EecccCCHHHHHHHHHHHHHCC-------CeEEEeCC
Q 028446 176 LRFGMFNFEVIQAAIRIAKQEG-------LSVSMDLA 205 (209)
Q Consensus 176 ~~~~~~~~~~~~~l~~~a~~~g-------~~v~~D~~ 205 (209)
+++.. | +...++++.+++.+ +++++|++
T Consensus 133 ~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~v~~d~~ 167 (290)
T cd01939 133 FEGRN-P-DETLRMMQHIEEHNNRRPEIRITISVEVE 167 (290)
T ss_pred EeccC-H-HHHHHHHHHHHHhcCcCCCcceEEEEEec
Confidence 99644 4 44567788888776 68999986
No 16
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.91 E-value=6.1e-23 Score=173.24 Aligned_cols=165 Identities=28% Similarity=0.445 Sum_probs=139.6
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| ++++|++.+.. +++|..... .. .......+||++.|+|++++ |||.+
T Consensus 1 ~v~~iG-~~~vD~~~~~~----~~~~~~~~~-~~--------------------~~~~~~~~GG~~~N~A~~~a-~lG~~ 53 (311)
T COG0524 1 DVVVIG-EANVDLIAQVV----DRLPEPGET-VL--------------------GDFFKVAGGGKGANVAVALA-RLGAK 53 (311)
T ss_pred CEEEEC-chhhheehhhc----cCCCCCccc-cc--------------------ccceeecCCchHHHHHHHHH-HcCCc
Confidence 489999 99999999742 556644221 11 02468889999999999999 99999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCC-cCCCCCcccCchhhhCCccEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS-NAVKIQADELIAEDVKGSKWL 174 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~g-a~~~l~~~~i~~~~l~~~~~v 174 (209)
+.|+|++|+|.+|+.+++.|+++|||++++..... +|+.++++++++|+|+|+++++ +...++++++++..+..++++
T Consensus 54 ~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (311)
T COG0524 54 VALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDEDELAGADVL 133 (311)
T ss_pred eEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcChHHHhhcCee
Confidence 99999999999999999999999999999998877 8999999999899999999988 466688888876678899999
Q ss_pred EEe-ccc-CCHHHHHHHHHHHHHCCCeEEEeCCCCC
Q 028446 175 VLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (209)
Q Consensus 175 ~~~-~~~-~~~~~~~~l~~~a~~~g~~v~~D~~~~~ 208 (209)
|++ +.+ .+++....+++.|++.|.+|++|+++..
T Consensus 134 ~~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~~ 169 (311)
T COG0524 134 HISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRP 169 (311)
T ss_pred eEEEeecCCChHHHHHHHHHHHHcCCeEEEecCCCc
Confidence 999 443 2347889999999999999999998763
No 17
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.90 E-value=1.9e-22 Score=179.41 Aligned_cols=177 Identities=21% Similarity=0.237 Sum_probs=131.9
Q ss_pred CCCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhh
Q 028446 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (209)
Q Consensus 13 ~~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~r 92 (209)
++.++|+++| ++++|+++.+ +++|.+ +. +....++.++... .+......+|| ++|+|++++ |
T Consensus 70 ~~~~~vl~lG-~~~vD~i~~V-----~~lP~~-~~------~~~~~~~~~~~~~---~~~~~~~~~GG-~~NvAvaLa-r 131 (470)
T PLN02341 70 GKEIDVATLG-NLCVDIVLPV-----PELPPP-SR------EERKAYMEELAAS---PPDKKSWEAGG-NCNFAIAAA-R 131 (470)
T ss_pred cccccEEEEC-CcceeEEEec-----CCCCCC-CH------HHHHHHHHhhccc---ccccceecCCh-HHHHHHHHH-H
Confidence 3567999999 9999999999 778754 21 1122233222110 11245566777 799999999 8
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecC---------CCceeEEEEEcCCCCeeEEecCCcCCCCCccc-
Q 028446 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR---------GPTGQCVCLVDASGNRTMRPCLSNAVKIQADE- 162 (209)
Q Consensus 93 lG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~---------~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~- 162 (209)
||.++.++|+||+|.+|+++++.|+++||++.++...+ .+|+.++++++++|+|+++...+.......++
T Consensus 132 LG~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~ 211 (470)
T PLN02341 132 LGLRCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWI 211 (470)
T ss_pred cCCCeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhh
Confidence 99999999999999999999999999999999987654 26999999999999998765443222222111
Q ss_pred --C---chhhhCCccEEEEe-ccc--CCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 163 --L---IAEDVKGSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 163 --i---~~~~l~~~~~v~~~-~~~--~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+ ..+.++++++||++ +.+ .+.+.+.++++.|++.|++|+|||++.
T Consensus 212 ~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~ 264 (470)
T PLN02341 212 SKLSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPR 264 (470)
T ss_pred hcccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCc
Confidence 1 12467899999999 422 257788899999999999999999864
No 18
>PRK09850 pseudouridine kinase; Provisional
Probab=99.90 E-value=1.9e-22 Score=170.65 Aligned_cols=160 Identities=24% Similarity=0.260 Sum_probs=127.9
Q ss_pred CceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcC
Q 028446 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (209)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG 94 (209)
++.|+++| ++++|+++.+ .. |.+.+... +......+||+++|+|++++ |||
T Consensus 4 ~~~i~~iG-~~~vD~~~~~-----~~-~~~~~~~~---------------------~~~~~~~~GG~~~NvA~~l~-~lG 54 (313)
T PRK09850 4 KDYVVIIG-SANIDVAGYS-----HE-SLNYADSN---------------------PGKIKFTPGGVGRNIAQNLA-LLG 54 (313)
T ss_pred CCcEEEEC-cEEEeeeccC-----CC-cCcCCCCC---------------------ceEEEEeCCcHHHHHHHHHH-HcC
Confidence 56899999 9999999876 22 33333221 23578889999999999999 899
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEec-CCcCCCCCcccCc--hhhhCC
Q 028446 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPC-LSNAVKIQADELI--AEDVKG 170 (209)
Q Consensus 95 ~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~-~ga~~~l~~~~i~--~~~l~~ 170 (209)
.++.++|+||+|.+|+++++.|++.||+++++...++ +|+.++++++++|+|++..+ +++...++++.++ .+.+++
T Consensus 55 ~~~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (313)
T PRK09850 55 NKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQR 134 (313)
T ss_pred CCeEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999877666 79999999999999988664 3555566665543 245789
Q ss_pred ccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++++|+++.+ +.+....+++++ +|++++|||++
T Consensus 135 ~~~v~~~~~~-~~~~~~~~~~~~--~g~~v~~D~~~ 167 (313)
T PRK09850 135 AKVIVADCNI-SEEALAWILDNA--ANVPVFVDPVS 167 (313)
T ss_pred CCEEEEeCCC-CHHHHHHHHHhc--cCCCEEEEcCC
Confidence 9999998655 666666666643 58999999985
No 19
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.89 E-value=7.5e-22 Score=164.26 Aligned_cols=159 Identities=24% Similarity=0.374 Sum_probs=131.7
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| .+++|+++.+ +++|.... ... +..+...+||+++|+|.+|+ +||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~-----~~~p~~~~-~~~--------------------~~~~~~~~GG~~~NvA~~l~-~lG~~ 52 (284)
T cd01945 1 RVLGVG-LAVLDLIYLV-----ASFPGGDG-KIV--------------------ATDYAVIGGGNAANAAVAVA-RLGGQ 52 (284)
T ss_pred CEEEEC-cceeEEEEEe-----ccCCCCCC-eEE--------------------EeEEEEecCCHHHHHHHHHH-HcCCC
Confidence 589999 9999999998 66775532 211 13788999999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~ 175 (209)
+.++|.+|+|.+|+.+++.|++.||+++++...++ +|+.+++ .+.+|+|++..+.+....+.+++++...+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (284)
T cd01945 53 ARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISITAIDTQAAPDSLPDAILGGADAVL 131 (284)
T ss_pred eEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCHHHhCcCCEEE
Confidence 99999999999999999999999999999988765 7888776 445788888777776667777888776789999999
Q ss_pred EecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 176 ~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++... ++...++++.++++|+++++|+++
T Consensus 132 i~~~~--~~~~~~~~~~~~~~g~~v~~~~~~ 160 (284)
T cd01945 132 VDGRQ--PEAALHLAQEARARGIPIPLDLDG 160 (284)
T ss_pred EcCCC--HHHHHHHHHHHHHcCCCeeEeccC
Confidence 99532 466788999999999977776654
No 20
>PLN02548 adenosine kinase
Probab=99.89 E-value=7.3e-22 Score=168.29 Aligned_cols=177 Identities=24% Similarity=0.292 Sum_probs=141.1
Q ss_pred ecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHH---HHhhcCCCe
Q 028446 21 LQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRG---LSVGFGVPC 97 (209)
Q Consensus 21 iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~---la~rlG~~~ 97 (209)
+| |+++|+++.++++||+++.+++|.+++. ..+..+...+.. ...+....+||++.|++.. ++ ++|.++
T Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~-----~~~~~~~~~GG~~~Nva~~a~~l~-~lg~~~ 72 (332)
T PLN02548 1 MG-NPLLDISAVVDQDFLDKYDVKLNNAILA-EEKHLPMYDELA-----SKYNVEYIAGGATQNSIRVAQWML-QIPGAT 72 (332)
T ss_pred CC-CceeEEEEecCHHHHHHcCCCCCceeec-hHHHHHHHHHHh-----ccCCceecCCcHHHHHHHHHHHHh-cCCCcE
Confidence 47 9999999999999999999999988854 433334433321 1247889999999998554 45 679999
Q ss_pred EEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCc----hhhhCCccE
Q 028446 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI----AEDVKGSKW 173 (209)
Q Consensus 98 ~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~----~~~l~~~~~ 173 (209)
.|+|.||+|.+|+++++.|+++||+++++...+.+|+.++++++ +|+|+++.+.++...++++++. .+.+.++++
T Consensus 73 ~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (332)
T PLN02548 73 SYMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKF 151 (332)
T ss_pred EEEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCE
Confidence 99999999999999999999999999987654448999999886 7999998888776666666553 335688999
Q ss_pred EEEeccc--CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 174 LVLRFGM--FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 174 v~~~~~~--~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+|+++.. .+.+.+..+++.|+++|.++.+|+++
T Consensus 152 v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 186 (332)
T PLN02548 152 YYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLSA 186 (332)
T ss_pred EEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECCC
Confidence 9999422 25677888999999999999999864
No 21
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.89 E-value=6.9e-22 Score=165.28 Aligned_cols=156 Identities=22% Similarity=0.401 Sum_probs=134.3
Q ss_pred ceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeEEEEEe
Q 028446 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (209)
Q Consensus 24 ~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~~ig~v 103 (209)
++++|+++.+ +++|.+ +..... ......+||++.|+|++++ +||.++.+++.+
T Consensus 2 ~~~~D~~~~~-----~~~p~~-~~~~~~--------------------~~~~~~~GG~~~Nva~~l~-~lg~~~~~~~~v 54 (293)
T TIGR02152 2 SINMDLVLRT-----DRLPKP-GETVHG--------------------HSFQIGPGGKGANQAVAAA-RLGAEVSMIGKV 54 (293)
T ss_pred CceEeEEEEe-----CCCCCC-CCcEec--------------------CCceecCCCcHHHHHHHHH-HCCCCEEEEEEe
Confidence 8999999999 667765 333221 3678999999999999999 899999999999
Q ss_pred cCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCcccCc--hhhhCCccEEEEeccc
Q 028446 104 GDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELI--AEDVKGSKWLVLRFGM 180 (209)
Q Consensus 104 G~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~--~~~l~~~~~v~~~~~~ 180 (209)
|+|.+|+++++.|++.||+++++...++ +|+.++++++++|+|+++.++++...+++++++ .+.+..+++++++...
T Consensus 55 G~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (293)
T TIGR02152 55 GDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQLEI 134 (293)
T ss_pred cCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCEEEEecCC
Confidence 9999999999999999999999987665 899999999988999998888887778887776 3467899999998544
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 181 FNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 181 ~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+.+.+.++++.++++|+++++|+++.
T Consensus 135 -~~~~~~~~~~~~~~~~~~v~~D~~~~ 160 (293)
T TIGR02152 135 -PLETVLEAAKIAKKHGVKVILNPAPA 160 (293)
T ss_pred -CHHHHHHHHHHHHHcCCEEEEECCcC
Confidence 67788899999999999999999864
No 22
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.89 E-value=3.2e-22 Score=167.04 Aligned_cols=157 Identities=25% Similarity=0.371 Sum_probs=129.6
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| ++++|+++..+. ... ++.+....+||+++|+|++++ |||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~~~-----------~~~--------------------~~~~~~~~~GG~~~N~a~~la-~lg~~ 47 (294)
T cd01166 1 DVVTIG-EVMVDLSPPGGG-----------RLE--------------------QADSFRKFFGGAEANVAVGLA-RLGHR 47 (294)
T ss_pred CeEEec-hhheeeecCCCC-----------ccc--------------------hhhccccccCChHHHHHHHHH-hcCCc
Confidence 589999 999999876521 100 013677889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCC--cCCCCCcccCchhhhCCccE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS--NAVKIQADELIAEDVKGSKW 173 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~g--a~~~l~~~~i~~~~l~~~~~ 173 (209)
+.++|.+|+|.+|+.+++.|++.||+++++.+.+. +|+.++++++.+|+|+++.+++ +...++.++++...++++++
T Consensus 48 ~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
T cd01166 48 VALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADH 127 (294)
T ss_pred eEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCE
Confidence 99999999999999999999999999999976655 8999999998789999887753 44567777776667889999
Q ss_pred EEEeccc---CC--HHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 174 LVLRFGM---FN--FEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 174 v~~~~~~---~~--~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
||++... .+ .+.+.++++.+++.|+++++||+.
T Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 165 (294)
T cd01166 128 LHLSGITLALSESAREALLEALEAAKARGVTVSFDLNY 165 (294)
T ss_pred EEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCC
Confidence 9999433 12 267788999999999999999975
No 23
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.7e-22 Score=165.87 Aligned_cols=166 Identities=23% Similarity=0.314 Sum_probs=138.1
Q ss_pred CCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhc
Q 028446 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (209)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rl 93 (209)
.++.|+++| ++++|++..+ .++|... .+ |++..+...+||+++|+|++++ ||
T Consensus 8 ~~~~vv~fG-s~~~D~V~~~-----~~~p~~g-e~--------------------~~~~~f~~~~GG~~aN~Avaaa-rL 59 (330)
T KOG2855|consen 8 EPPLVVVFG-SMLIDFVPST-----RRLPNAG-ET--------------------WEPPGFKTAPGGKGANQAVAAA-RL 59 (330)
T ss_pred CCceEEEec-cceeeeeecc-----ccCCCcc-cc--------------------ccCCcceecCCCcchhhhhHHH-hc
Confidence 578999999 9999999998 7788652 21 3456899999999999999999 99
Q ss_pred CCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCcc--cCchhhhCC
Q 028446 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQAD--ELIAEDVKG 170 (209)
Q Consensus 94 G~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~--~i~~~~l~~ 170 (209)
|.+++|+|+||+|.+|+.+++.|++.+|+++++...++ +|+.+++.+..+|++.++++.+++..+.++ ++..+.++.
T Consensus 60 G~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ 139 (330)
T KOG2855|consen 60 GGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKE 139 (330)
T ss_pred CcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhh
Confidence 99999999999999999999999999999999998877 899999999999999999999888766554 555678999
Q ss_pred ccEEEEecccCC----HHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 171 SKWLVLRFGMFN----FEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 171 ~~~v~~~~~~~~----~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++++|++..+.+ .......++.+++.|..+.+||+..
T Consensus 140 ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~ 180 (330)
T KOG2855|consen 140 AKVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLR 180 (330)
T ss_pred ccEEEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCcc
Confidence 999999954411 1222233557778888888888753
No 24
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.88 E-value=1.5e-21 Score=161.00 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=107.5
Q ss_pred ceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecC-
Q 028446 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL- 152 (209)
Q Consensus 74 ~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~- 152 (209)
....+||+++|+|++++ +||.++.++|.+|+|++|+++++.|++.||+++++...+++|+.++++ .++|+|+++.+.
T Consensus 17 ~~~~~GG~~~Nva~~la-~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~-~~~g~r~~~~~~~ 94 (264)
T cd01940 17 GKMYPGGNALNVAVYAK-RLGHESAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVE-LVDGDRIFGLSNK 94 (264)
T ss_pred ceecCCCcHHHHHHHHH-HcCCCeeEEecccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEE-ecCCceEEEeecC
Confidence 34789999999999999 899999999999999999999999999999999998766689988855 467899887654
Q ss_pred CcCCCCCcccCchhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 153 SNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 153 ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++.....+.+.+...+++++++|++... +.+.+.++++.++++|++|+||+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~ 148 (264)
T cd01940 95 GGVAREHPFEADLEYLSQFDLVHTGIYS-HEGHLEKALQALVGAGALISFDFSDR 148 (264)
T ss_pred CcHHhcccCcccHhHHhcCCEEEEcccc-cHHHHHHHHHHHHHcCCEEEEcCccc
Confidence 5433333333334567899999999432 45678899999999999999999864
No 25
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.87 E-value=4.2e-21 Score=160.49 Aligned_cols=154 Identities=22% Similarity=0.348 Sum_probs=126.2
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| ++++|+++..+ +.+ ......+||+++|+|.+++ +||.+
T Consensus 1 ~ilviG-~~~~D~~~~~~-----~~~-----------------------------~~~~~~~GG~~~n~a~~l~-~lg~~ 44 (295)
T cd01167 1 KVVCFG-EALIDFIPEGS-----GAP-----------------------------ETFTKAPGGAPANVAVALA-RLGGK 44 (295)
T ss_pred CEEEEc-ceeEEEecCCC-----CCC-----------------------------ccccccCCCcHHHHHHHHH-hcCCC
Confidence 589999 99999997662 110 2577889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCccc-CchhhhCCccEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADE-LIAEDVKGSKWL 174 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~-i~~~~l~~~~~v 174 (209)
+.++|.+|+|.+|+.+++.|+++||++.++.+.++ +|+.++++++++|+|++..+.++...+..+. +..+.++++++|
T Consensus 45 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 124 (295)
T cd01167 45 AAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELNPDLLSEADIL 124 (295)
T ss_pred eEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCChhHhccCCEE
Confidence 99999999999999999999999999999886554 8999999998889999988777654333222 445577899999
Q ss_pred EEecc-c-CC--HHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 175 VLRFG-M-FN--FEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 175 ~~~~~-~-~~--~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
|++.. + .+ .+...++++.+++.|+++++||+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~ 160 (295)
T cd01167 125 HFGSIALASEPSRSALLELLEAAKKAGVLISFDPNL 160 (295)
T ss_pred EEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCC
Confidence 99832 2 12 356788999999999999999974
No 26
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.87 E-value=2.8e-21 Score=161.07 Aligned_cols=160 Identities=23% Similarity=0.319 Sum_probs=128.3
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
.|+++| ++++|+++.+ ++.|.+. ... +.+....+||+++|+|++++ +||.+
T Consensus 1 ~v~~~G-~~~~D~~~~~-----~~~~~~~-~~~---------------------~~~~~~~~GG~~~Nva~~l~-~lG~~ 51 (288)
T cd01941 1 EIVVIG-AANIDLRGKV-----SGSLVPG-TSN---------------------PGHVKQSPGGVGRNIAENLA-RLGVS 51 (288)
T ss_pred CeEEEE-eEEEeeeecc-----cCccccC-CCC---------------------CeeEEEccCcHHHHHHHHHH-HhCCC
Confidence 378999 9999999988 4455432 211 12567899999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEE-ecCCcCCCCCcccCc--hhhhCCccE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR-PCLSNAVKIQADELI--AEDVKGSKW 173 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~-~~~ga~~~l~~~~i~--~~~l~~~~~ 173 (209)
+.++|++|+|.+|+.+++.|++.||++.++...+.+|+.++++++.+|+|++. ..++....+++++.+ ...+.++++
T Consensus 52 ~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (288)
T cd01941 52 VALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKP 131 (288)
T ss_pred cEEEEEEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCE
Confidence 99999999999999999999999999998874444899999999989999873 344444445544332 346789999
Q ss_pred EEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 174 v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++++..+ +.+....+++.+++.+.++++||++
T Consensus 132 v~~~~~~-~~~~~~~~~~~a~~~~~~v~~d~~~ 163 (288)
T cd01941 132 IVVDANL-PEEALEYLLALAAKHGVPVAFEPTS 163 (288)
T ss_pred EEEeCCC-CHHHHHHHHHhhhhcCCcEEEEccc
Confidence 9998554 6677888999999999999999874
No 27
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.87 E-value=9.8e-21 Score=156.27 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=122.6
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| ++++|+++.+ +++|.++ .... .......+||++.|+|++++ |||.+
T Consensus 1 ~il~iG-~~~iD~~~~~-----~~~~~~~-~~~~--------------------~~~~~~~~GG~~~Nva~~l~-~lG~~ 52 (265)
T cd01947 1 KIAVVG-HVEWDIFLSL-----DAPPQPG-GISH--------------------SSDSRESPGGGGANVAVQLA-KLGND 52 (265)
T ss_pred CEEEEe-eeeEEEEEEe-----cCCCCCC-ceee--------------------cccceeecCchHHHHHHHHH-HcCCc
Confidence 589999 9999999998 5566553 2222 13788999999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~ 176 (209)
+.++|.+|+|.+|+.+++.|++ ++++.++...++.|+.++++++++|+|+++.+.+.. +++++...+++++++|+
T Consensus 53 ~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~~~~~~~~~~~~~ 127 (265)
T cd01947 53 VRFFSNLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGERL----EDDLKWPILDEGDGVFI 127 (265)
T ss_pred eEEEEEecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcceEEecCCCC----cccCCHhHhccCCEEEE
Confidence 9999999999999999999999 999988876656899999999989999987765432 34455556789999999
Q ss_pred ecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 177 ~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+... + ..++++.|++++ .+++|+++.
T Consensus 128 ~~~~-~---~~~~~~~a~~~~-~~~~d~~~~ 153 (265)
T cd01947 128 TAAA-V---DKEAIRKCRETK-LVILQVTPR 153 (265)
T ss_pred eccc-c---cHHHHHHHHHhC-CeEeccCcc
Confidence 9533 2 245677787775 678888754
No 28
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.86 E-value=9e-21 Score=159.23 Aligned_cols=154 Identities=24% Similarity=0.324 Sum_probs=125.3
Q ss_pred ecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeEEE
Q 028446 21 LQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLI 100 (209)
Q Consensus 21 iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~~i 100 (209)
++.++.+|+++.+ +++| + |..... .+...++||+++|+|++++ +||.++.++
T Consensus 4 ~~~~~~~D~~~~~-----~~~~-~-g~~~~~--------------------~~~~~~~GG~~~NvA~~la-~lG~~v~~i 55 (304)
T TIGR03828 4 VTLNPAIDLTIEL-----DGLT-L-GEVNRV--------------------ESTRIDAGGKGINVSRVLK-NLGVDVVAL 55 (304)
T ss_pred EEcchHHeEEEEc-----cccc-c-Cceeec--------------------ccccccCCccHHHHHHHHH-HcCCCeEEE
Confidence 4458999999999 6677 4 433322 3788999999999999999 899999999
Q ss_pred EEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCch------hhhCCccEE
Q 028446 101 GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSKWL 174 (209)
Q Consensus 101 g~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~------~~l~~~~~v 174 (209)
|+||+| +|+.+++.|++.||+++++... ..|+.++++++++|+|+++.+.++ .+++++++. +.+++++++
T Consensus 56 s~vG~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v 131 (304)
T TIGR03828 56 GFLGGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPSGTETKLNGPGP--EISEEELEALLEKLRAQLAEGDWL 131 (304)
T ss_pred EEecCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEE
Confidence 999999 6999999999999999988876 468888888888899988877664 355554431 257899999
Q ss_pred EEeccc---CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 175 VLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 175 ~~~~~~---~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
|+++.. .+.+.+..+++.++++|++++||++.
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 166 (304)
T TIGR03828 132 VLSGSLPPGVPPDFYAELIALAREKGAKVILDTSG 166 (304)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCh
Confidence 998322 24677889999999999999999974
No 29
>PRK09954 putative kinase; Provisional
Probab=99.86 E-value=1.5e-20 Score=162.27 Aligned_cols=158 Identities=20% Similarity=0.249 Sum_probs=123.6
Q ss_pred ceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC
Q 028446 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~ 95 (209)
..|+++| ++++|+++.++ .++|.. +. . +......+||+++|+|++++ |||.
T Consensus 58 ~~v~viG-~~~vD~~~~~~----~~~p~~-~~-~---------------------~~~~~~~~GG~~~NvA~~la-rLG~ 108 (362)
T PRK09954 58 EYCVVVG-AINMDIRGMAD----IRYPQA-AS-H---------------------PGTIHCSAGGVGRNIAHNLA-LLGR 108 (362)
T ss_pred ccEEEEE-EEEEEEEEeeC----CcCcCC-CC-C---------------------CceEEEecCcHHHHHHHHHH-HcCC
Confidence 3899999 99999999872 156643 21 1 23678899999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCC--cCCCCCcccCc--hhhhCC
Q 028446 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS--NAVKIQADELI--AEDVKG 170 (209)
Q Consensus 96 ~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~g--a~~~l~~~~i~--~~~l~~ 170 (209)
++.|+|+||+|.+|+++++.|++.||+++++.+.++ +|+.++++.++++ ++++.+.+ +...+++++++ ...+..
T Consensus 109 ~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (362)
T PRK09954 109 DVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQD-ETVLAINDTHILQQLTPQLLNGSRDLIRH 187 (362)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCC-CEEEEEcCchhhhcCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999888776 7999888887654 44544443 33456665554 245678
Q ss_pred ccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+++++++..+ |.+....+++.+ +++++++|+.+
T Consensus 188 ~~~v~~~~~~-~~~~~~~~~~~a--~~~~v~~D~~~ 220 (362)
T PRK09954 188 AGVVLADCNL-TAEALEWVFTLA--DEIPVFVDTVS 220 (362)
T ss_pred CCEEEEECCC-CHHHHHHHHHhC--CCCcEEEECCC
Confidence 9999998655 666666666655 47999999975
No 30
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.86 E-value=1.4e-20 Score=155.25 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=117.5
Q ss_pred ceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC
Q 028446 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~ 95 (209)
++|+++| .+++|++.+. ...++||++.|+|++++ |||.
T Consensus 1 ~~v~~iG-~~~~D~~~~~----------------------------------------~~~~~GG~~~NvA~~l~-~lG~ 38 (260)
T PRK09813 1 KKLATIG-DNCVDIYPQL----------------------------------------GKAFSGGNAVNVAVYCT-RYGI 38 (260)
T ss_pred CeEEEec-cceeeecccC----------------------------------------CccccCccHHHHHHHHH-HcCC
Confidence 4799999 9999987543 12588999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecC-CcCCCCCcccCchhhhCCccEE
Q 028446 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-SNAVKIQADELIAEDVKGSKWL 174 (209)
Q Consensus 96 ~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~-ga~~~l~~~~i~~~~l~~~~~v 174 (209)
++.++|.+|+|.+|+++++.|++.||+++++.+.+++|+.+++.++ +|+|++..+. ++...+..++.+.+.+.+++++
T Consensus 39 ~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 117 (260)
T PRK09813 39 QPGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYAWLAQYDIV 117 (260)
T ss_pred cceEEEEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEe-CCcEEeeccCCCcccccccCHHHHHHHHhCCEE
Confidence 9999999999999999999999999999999887668888888875 6899887654 5444544444444567899999
Q ss_pred EEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
|++.. . ...++++.++++|++++||+++.
T Consensus 118 ~~~~~--~--~~~~~~~~~~~~~~~v~~D~~~~ 146 (260)
T PRK09813 118 HAAIW--G--HAEDAFPQLHAAGKLTAFDFSDK 146 (260)
T ss_pred EEecc--c--hHHHHHHHHHHcCCeEEEEcCCC
Confidence 99731 1 13467788899999999999854
No 31
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.85 E-value=8.4e-20 Score=154.26 Aligned_cols=167 Identities=21% Similarity=0.282 Sum_probs=121.6
Q ss_pred CCCceEEEecCceeEEEEeecChhHHHhC-CCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHh
Q 028446 13 SQAALILGLQPAALIDHVARVDWSLLDQI-PGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (209)
Q Consensus 13 ~~~~~v~~iG~~~~vD~~~~~~~~~l~~~-p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~ 91 (209)
.++.+|+++| .+++|+++...- +++ |...+.... .......+|| ++|+|.+++
T Consensus 5 ~~~~~il~iG-~~~iD~~~~~~~---~~~~~~~~~~~~~--------------------~~~~~~~~GG-a~NvA~~l~- 58 (315)
T TIGR02198 5 FKGAKVLVVG-DVMLDRYWYGKV---SRISPEAPVPVVK--------------------VEREEDRLGG-AANVARNIA- 58 (315)
T ss_pred hCCCcEEEEC-ceeEeeeeeecc---cccCCCCCCceEE--------------------EEEEEecCcH-HHHHHHHHH-
Confidence 4688999999 999999987311 232 111111000 0245677888 799999999
Q ss_pred hcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEE-ecCCcCCCCCccc----Cc-
Q 028446 92 GFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR-PCLSNAVKIQADE----LI- 164 (209)
Q Consensus 92 rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~-~~~ga~~~l~~~~----i~- 164 (209)
+||.++.++|+||+|.+|+++++.|+++||+++++.+.++ +|+.++++++++ +.++ ........++... ++
T Consensus 59 ~lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (315)
T TIGR02198 59 SLGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARN--QQLLRVDFEERDPINAELEARLLAA 136 (315)
T ss_pred hcCCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCC--eEEEEecCCCCCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999887766 899999988753 3332 2222222233211 11
Q ss_pred -hhhhCCccEEEEe-ccc--CCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 165 -AEDVKGSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 165 -~~~l~~~~~v~~~-~~~--~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
.+.++++++||++ +.. .+.+.+..+++.|+++|++|+|||++.
T Consensus 137 ~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 183 (315)
T TIGR02198 137 IREQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGK 183 (315)
T ss_pred HHhhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCc
Confidence 2457899999998 321 256778899999999999999999854
No 32
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.84 E-value=8.8e-20 Score=154.25 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=127.1
Q ss_pred ceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC
Q 028446 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~ 95 (209)
.+|+.+..|+++|+++.+ +++| + |+...+ .....++||+++|+|++++ |||.
T Consensus 3 ~~~~~~~~~p~~D~~~~~-----~~~~-~-~~~~~~--------------------~~~~~~~GG~~~Nva~~la-~lG~ 54 (312)
T PRK09513 3 RRVATITLNPAYDLVGFC-----PEIE-R-GEVNLV--------------------KTTGLHAAGKGINVAKVLK-DLGI 54 (312)
T ss_pred ceEEEEecChHHeEEEEc-----Ccee-c-CCeeee--------------------cceeecCCchHHHHHHHHH-HcCC
Confidence 357766679999999998 6676 3 443332 3788999999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCc------hhhhC
Q 028446 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVK 169 (209)
Q Consensus 96 ~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~------~~~l~ 169 (209)
++.++|.+|+|.+|++ ++.|+++||++.++. .+++|+.++++++++|+|+++.+.+. .+++.+++ ...++
T Consensus 55 ~~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 130 (312)
T PRK09513 55 DVTVGGFLGKDNQDGF-QQLFSELGIANRFQV-VQGRTRINVKLTEKDGEVTDFNFSGF--EVTPADWERFVTDSLSWLG 130 (312)
T ss_pred CeEEEEEecCccHHHH-HHHHHHcCCCccEEE-CCCCCEEEEEEEeCCCcEEEEeCCCC--CCCHHHHHHHHHHHHhhcC
Confidence 9999999999999997 588999999987764 44589999999888899987777663 35554432 23578
Q ss_pred CccEEEEecccC---CHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 170 GSKWLVLRFGMF---NFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~~~~~---~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++++||+++.+. +.+.+.++++.++++|.+++||+++
T Consensus 131 ~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 170 (312)
T PRK09513 131 QFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSR 170 (312)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECCh
Confidence 999999995441 2467788899999999999999985
No 33
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.84 E-value=1.6e-20 Score=157.06 Aligned_cols=160 Identities=29% Similarity=0.420 Sum_probs=131.4
Q ss_pred ceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC
Q 028446 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~ 95 (209)
.+|+++| .+++|++..++. + . +..... ......+||++.|+|++|+ +||.
T Consensus 2 ~~v~~iG-~~~iD~~~~~~~-----~--~-~~~~~~--------------------~~~~~~~GG~~~n~a~~l~-~LG~ 51 (301)
T PF00294_consen 2 KKVLVIG-EVNIDIIGYVDR-----F--K-GDLVRV--------------------SSVKRSPGGAGANVAIALA-RLGA 51 (301)
T ss_dssp EEEEEES-EEEEEEEEESSS-----H--T-TSEEEE--------------------SEEEEEEESHHHHHHHHHH-HTTS
T ss_pred CcEEEEC-ccceEEEeecCC-----c--C-Ccceec--------------------ceEEEecCcHHHHHHHHHH-hccC
Confidence 3799999 999999999832 2 1 222221 4789999999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEE
Q 028446 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (209)
Q Consensus 96 ~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v 174 (209)
++.+++.+|+|.+|+.+++.|++.||+++++.+.++ +|+.++++++++|+|+++.+.++...++++++....+.+++++
T Consensus 52 ~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (301)
T PF00294_consen 52 DVALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDELDEEAIDEADIL 131 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHHHHHHHHTESEE
T ss_pred cceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccccccccccccce
Confidence 999999999999999999999999999999997765 8999999999889999999988777777776666778899999
Q ss_pred EEec-ccC---CHHHHHHHHHHHHHCC--CeEEEeCC
Q 028446 175 VLRF-GMF---NFEVIQAAIRIAKQEG--LSVSMDLA 205 (209)
Q Consensus 175 ~~~~-~~~---~~~~~~~l~~~a~~~g--~~v~~D~~ 205 (209)
|++. .+. +.+....+.+.+++.+ .+++.++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (301)
T PF00294_consen 132 HLSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPS 168 (301)
T ss_dssp EEESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGG
T ss_pred eecccccccccccceeeeccccccccccccccccccc
Confidence 9997 431 3566677777777777 45555543
No 34
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.84 E-value=1.3e-19 Score=152.28 Aligned_cols=165 Identities=22% Similarity=0.278 Sum_probs=121.1
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| +.++|+++.++. +++|.+... .... .......+|| ++|+|.+|+ |||.+
T Consensus 1 ~vl~iG-~~~~D~~~~~~~---~~~~~~~~~-~~~~------------------~~~~~~~~GG-~~NvA~~la-~LG~~ 55 (304)
T cd01172 1 KVLVVG-DVILDEYLYGDV---ERISPEAPV-PVVK------------------VEREEIRLGG-AANVANNLA-SLGAK 55 (304)
T ss_pred CEEEEc-ceeEEeeEeecc---ccccCCCCc-ceEE------------------eeeEEecCcH-HHHHHHHHH-HhCCC
Confidence 589999 999999997632 334322111 0000 0246678999 699999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccC------chhhhCC
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADEL------IAEDVKG 170 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i------~~~~l~~ 170 (209)
+.++|.+|+|.+|+++++.|++.||+++++.....+|+.+++++++ +++.+..+.+....++.+.. ....+++
T Consensus 56 ~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (304)
T cd01172 56 VTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLPE 134 (304)
T ss_pred eEEEEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999854433379998888875 56766555544334443321 1245789
Q ss_pred ccEEEEeccc---CCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 171 SKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 171 ~~~v~~~~~~---~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+++||++... .+.+.+.++++.++++|++|+||+++.
T Consensus 135 ~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~ 174 (304)
T cd01172 135 ADVVILSDYGKGVLTPRVIEALIAAARELGIPVLVDPKGR 174 (304)
T ss_pred CCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCc
Confidence 9999997321 256778889999999999999999864
No 35
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.84 E-value=1.3e-19 Score=152.40 Aligned_cols=150 Identities=26% Similarity=0.364 Sum_probs=121.5
Q ss_pred ceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC
Q 028446 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (209)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~ 95 (209)
.+|+++| ++++|++... + ......+||++.|+|++++ +||.
T Consensus 3 ~~il~iG-~~~iD~~~~~------------~-------------------------~~~~~~~GG~~~N~a~~l~-~LG~ 43 (304)
T PRK09434 3 NKVWVLG-DAVVDLIPEG------------E-------------------------NRYLKCPGGAPANVAVGIA-RLGG 43 (304)
T ss_pred CcEEEec-chheeeecCC------------C-------------------------CceeeCCCChHHHHHHHHH-HcCC
Confidence 4899999 9999987211 1 1456789999999999999 8999
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEec--CCcCCCCCcccCchhhhCCcc
Q 028446 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPC--LSNAVKIQADELIAEDVKGSK 172 (209)
Q Consensus 96 ~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~--~ga~~~l~~~~i~~~~l~~~~ 172 (209)
++.++|.+|+|.+|+++++.|++.||++.++...++ +|+.+++.++++|+|++..+ +++...+++++++ .+.+++
T Consensus 44 ~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~ 121 (304)
T PRK09434 44 ESGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGE 121 (304)
T ss_pred CceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCC
Confidence 999999999999999999999999999999987765 89999999988899987543 3444445555554 367899
Q ss_pred EEEEe-ccc-CC--HHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 173 WLVLR-FGM-FN--FEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 173 ~v~~~-~~~-~~--~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++|++ +.+ .+ .+...++++.++++|++++||++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 159 (304)
T PRK09434 122 WLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNL 159 (304)
T ss_pred EEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCC
Confidence 99998 322 12 356678899999999999999974
No 36
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.83 E-value=1.3e-19 Score=152.92 Aligned_cols=159 Identities=22% Similarity=0.240 Sum_probs=127.4
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+.+-.|+.+|.++.+ ++++ .|+..++ .+....+||+++|+|++++ |||.+
T Consensus 3 ~i~~~~~~p~~d~~~~~-----~~~~--~~~~~~~--------------------~~~~~~~GG~~~NvA~~l~-~lG~~ 54 (309)
T PRK10294 3 RIYTLTLAPSLDSATIT-----PQIY--PEGKLRC--------------------SAPVFEPGGGGINVARAIA-HLGGS 54 (309)
T ss_pred eEEEEecChHHeEEEEe-----Ccee--eCCeEEe--------------------ccceecCCccHHHHHHHHH-HcCCC
Confidence 47777789999999999 6665 3444443 3678889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCch-----hhhCCc
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-----EDVKGS 171 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~-----~~l~~~ 171 (209)
+.+++.+|+ ++|+++++.|+++||+++++...+..+..+.++++++|+|+++.++++. ++.++++. ..++++
T Consensus 55 ~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 131 (309)
T PRK10294 55 ATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQVLEIESG 131 (309)
T ss_pred eEEEEEecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCCC--CCHHHHHHHHHHHHhcCCC
Confidence 999999996 7999999999999999999987655555556677778999888777653 66655542 236789
Q ss_pred cEEEEeccc---CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 172 KWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 172 ~~v~~~~~~---~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+++|+++.+ .+.+.+.++++.+++.|++++||+++
T Consensus 132 ~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 169 (309)
T PRK10294 132 AILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSG 169 (309)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCC
Confidence 999998543 13577889999999999999999974
No 37
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.83 E-value=2.7e-20 Score=158.76 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=126.6
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhc-CC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF-GV 95 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rl-G~ 95 (209)
+++++| .+++|++...+ + ..+...+||+++|+|++++ +| |.
T Consensus 1 ~~~~~G-~~~~d~i~~~~-----------~-------------------------~~~~~~~GG~~~N~A~~~~-~l~g~ 42 (328)
T cd01943 1 DFTTLG-MFIIDEIEYPD-----------S-------------------------EPVTNVLGGAGTYAILGAR-LFLPP 42 (328)
T ss_pred CccccC-cEEeeccccCC-----------C-------------------------CccccccCCchhhHhhcee-eecCC
Confidence 578999 99999987651 1 1567889999999999998 89 54
Q ss_pred --Ce--EEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCC
Q 028446 96 --PC--GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (209)
Q Consensus 96 --~~--~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~ 170 (209)
++ .+++++|+| +|+++++.|++.||++++ .+.++ +|+.++++++++|+|+++.+.+++..+++++++...+..
T Consensus 43 ~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 120 (328)
T cd01943 43 PLSRSISWIVDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNSTPLIR 120 (328)
T ss_pred ccccceeeEEecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccccccccccccccccC
Confidence 77 889999999 999999999999999988 65555 899999999888999988888887888888888667889
Q ss_pred ccEEEEecccCCH--HHHHHHHHHHHH------CCCeEEEeCCCC
Q 028446 171 SKWLVLRFGMFNF--EVIQAAIRIAKQ------EGLSVSMDLASF 207 (209)
Q Consensus 171 ~~~v~~~~~~~~~--~~~~~l~~~a~~------~g~~v~~D~~~~ 207 (209)
++++|+++.. +. +...++++.+++ .|.++++||++.
T Consensus 121 a~~~hl~~~~-~~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~ 164 (328)
T cd01943 121 SSCIHLICSP-ERCASIVDDIINLFKLLKGNSPTRPKIVWEPLPD 164 (328)
T ss_pred CCeEEEECCH-HHHHHHHHHHHHHHHhhccccCCccEEEEecCCc
Confidence 9999998532 23 678889999998 899999999764
No 38
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.82 E-value=3.6e-19 Score=148.77 Aligned_cols=154 Identities=23% Similarity=0.279 Sum_probs=123.4
Q ss_pred EEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeE
Q 028446 19 LGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG 98 (209)
Q Consensus 19 ~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~ 98 (209)
.++| ++++|+++++ +++| . +.... ..+....+||+++|+|++|+ |||.++.
T Consensus 4 ~~~~-~~~~D~~~~~-----~~~~-~-~~~~~--------------------~~~~~~~~GG~~~Nva~~la-~lG~~v~ 54 (289)
T cd01164 4 TVTL-NPAIDLTIEL-----DQLQ-P-GEVNR--------------------VSSTRKDAGGKGINVARVLK-DLGVEVT 54 (289)
T ss_pred EEec-ChHHeEEEEc-----Cccc-C-Cceee--------------------cccccccCCcchhHHHHHHH-HcCCCeE
Confidence 4677 9999999999 6665 2 33222 13678999999999999999 8999999
Q ss_pred EEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCch------hhhCCcc
Q 028446 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSK 172 (209)
Q Consensus 99 ~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~------~~l~~~~ 172 (209)
++|.+|+| +|+.+++.|++.||++.++... .+|+.++++++.+|+++.+.+.++ .+++++++. +.+++++
T Consensus 55 ~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 130 (289)
T cd01164 55 ALGFLGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEEDGTETEINEPGP--EISEEELEALLEKLKALLKKGD 130 (289)
T ss_pred EEEEccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCCC--CCCHHHHHHHHHHHHHhcCCCC
Confidence 99999998 8999999999999999988764 468888888887788877766554 465555431 3467899
Q ss_pred EEEEecccCC----HHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 173 WLVLRFGMFN----FEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 173 ~v~~~~~~~~----~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++|+++.+ | .+....+++.+++.+++++||++.
T Consensus 131 ~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~i~~D~~~ 167 (289)
T cd01164 131 IVVLSGSL-PPGVPADFYAELVRLAREKGARVILDTSG 167 (289)
T ss_pred EEEEeCCC-CCCcCHHHHHHHHHHHHHcCCeEEEECCh
Confidence 99998544 3 367788999999999999999975
No 39
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.82 E-value=6.4e-19 Score=148.80 Aligned_cols=154 Identities=20% Similarity=0.277 Sum_probs=120.8
Q ss_pred EEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeE
Q 028446 19 LGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG 98 (209)
Q Consensus 19 ~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~ 98 (209)
+.+-.|+++|.++.+ +++|.. +...+ ......+||+++|+|++++ |||.++.
T Consensus 3 ~~~t~np~~D~~~~~-----~~~~~~--~~~~~--------------------~~~~~~~GG~~~NvA~~la-~LG~~~~ 54 (309)
T PRK13508 3 LTVTLNPSIDISYPL-----DELKLD--TVNRV--------------------VDVSKTAGGKGLNVTRVLS-EFGENVL 54 (309)
T ss_pred EEEecChHHeEEEEe-----CCeeeC--CeEEe--------------------cceeecCCchHHHHHHHHH-HcCCCeE
Confidence 333349999999998 666532 33332 2678899999999999999 8999999
Q ss_pred EEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCc------hhhhCCcc
Q 028446 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVKGSK 172 (209)
Q Consensus 99 ~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~------~~~l~~~~ 172 (209)
++|.+|+ .+|+++++.|++ ||+++++.. ++.|+.++++++ +|+|+++.++++. ++.++.+ .+.+++++
T Consensus 55 ~~~~vGd-~~G~~i~~~l~~-gI~~~~~~~-~~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 128 (309)
T PRK13508 55 ATGLIGG-ELGQFIAEHLDD-QIKHAFYKI-KGETRNCIAILH-EGQQTEILEKGPE--ISVQEADGFLHHFKQLLESVE 128 (309)
T ss_pred EEEEecC-hhHHHHHHHHHc-CCCceEEEC-CCCCeeeEEEEe-CCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCC
Confidence 9999996 689999999999 999987654 457888888876 7899998887753 4443322 23578999
Q ss_pred EEEEeccc---CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 173 WLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 173 ~v~~~~~~---~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++|+++.. .+.+.+..+++.|+++|++++||+++
T Consensus 129 ~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 165 (309)
T PRK13508 129 VVAISGSLPAGLPVDYYAQLIELANQAGKPVVLDCSG 165 (309)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHCCCEEEEECCc
Confidence 99999543 13466788999999999999999975
No 40
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.81 E-value=9.5e-19 Score=155.92 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=120.6
Q ss_pred CCceEEEecCceeEEEEeecChhHHHhCCC-CCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhh
Q 028446 14 QAALILGLQPAALIDHVARVDWSLLDQIPG-ERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (209)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~-~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~r 92 (209)
.+.+|+++| ++++|+++.++. ++++. ....... .......+|| ++|+|++|+ +
T Consensus 9 ~~~~ilviG-~~~lD~~~~~~~---~~~~~~~~~~~~~--------------------~~~~~~~~GG-a~NvA~~la-~ 62 (473)
T PRK11316 9 ERAGVLVVG-DVMLDRYWYGPT---SRISPEAPVPVVK--------------------VNQIEERPGG-AANVAMNIA-S 62 (473)
T ss_pred CCCcEEEEC-ccEEeeeeeccc---ceeCCCCCCCEEE--------------------eeeEEecCcH-HHHHHHHHH-H
Confidence 456799999 999999998632 22211 1111111 1267788999 699999999 8
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCc---hhhhC
Q 028446 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI---AEDVK 169 (209)
Q Consensus 93 lG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~---~~~l~ 169 (209)
||.++.++|.+|+|.+|+++++.|++.||+++++.+.+.+|+.++++++.+++............++++++. ...++
T Consensus 63 LG~~v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 142 (473)
T PRK11316 63 LGAQARLVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALP 142 (473)
T ss_pred cCCcEEEEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998876434799999988754432222221122223343332 34578
Q ss_pred CccEEEEe-cccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 170 GSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 170 ~~~~v~~~-~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++++||++ +.....+.+..+++.++++|+++++||++.
T Consensus 143 ~~~~v~is~~~~~~~~~~~~~~~~~k~~g~~vv~Dp~~~ 181 (473)
T PRK11316 143 SIGALVLSDYAKGALASVQAMIQLARKAGVPVLIDPKGT 181 (473)
T ss_pred cCCEEEEecCCccchhHHHHHHHHHHhcCCeEEEeCCCC
Confidence 99999997 322123567888999999999999999753
No 41
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.81 E-value=8.8e-19 Score=147.94 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=119.6
Q ss_pred CceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeEEEEE
Q 028446 23 PAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGA 102 (209)
Q Consensus 23 ~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~~ig~ 102 (209)
.++++|..+.+ +++|. +++... .++...+||+++|+|++++ |||.++.++|.
T Consensus 6 ~~p~~d~~~~~-----~~~~~--~~~~~~--------------------~~~~~~~GG~~~NvA~~la-~LG~~v~~i~~ 57 (309)
T TIGR01231 6 LNPSVDISYPL-----TALKL--DTVNRV--------------------QEVSKTAGGKGLNVTRVLA-QVGDPVLASGF 57 (309)
T ss_pred cchHHeEEEEc-----CCeee--CceEee--------------------ceeeecCCccHHHHHHHHH-HcCCCeEEEEE
Confidence 48999999888 55653 233332 3688999999999999999 89999999999
Q ss_pred ecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCccc----Cc--hhhhCCccEEEE
Q 028446 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE----LI--AEDVKGSKWLVL 176 (209)
Q Consensus 103 vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~----i~--~~~l~~~~~v~~ 176 (209)
+|+| +|+++++.|++.||+++++... ..|+.++++++ +|+|+++.++++. +.++. +. ...++++++||+
T Consensus 58 vG~~-~G~~i~~~l~~~GV~~~~~~~~-~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (309)
T TIGR01231 58 LGGK-LGEFIEKELDHSDIKHAFYKIS-GETRNCIAILH-EGQQTEILEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAI 132 (309)
T ss_pred ecCh-hHHHHHHHHHHcCCceeEEECC-CCCEEeEEEEe-CCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhccCCEEEE
Confidence 9975 9999999999999999988764 46777777775 6999998887763 22211 11 245789999999
Q ss_pred eccc---CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 177 RFGM---FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 177 ~~~~---~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++.+ .+.+.+.++++.++++|++++||+++
T Consensus 133 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 165 (309)
T TIGR01231 133 SGSLPKGLPQDYYAQIIERCQNKGVPVVLDCSG 165 (309)
T ss_pred ECCCCCCcCHHHHHHHHHHHHhCCCeEEEECCh
Confidence 9543 14567889999999999999999975
No 42
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.81 E-value=1.3e-18 Score=146.24 Aligned_cols=153 Identities=23% Similarity=0.263 Sum_probs=122.1
Q ss_pred CceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeEEEEE
Q 028446 23 PAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGA 102 (209)
Q Consensus 23 ~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~~ig~ 102 (209)
.++.+|+++.+ +++ ..|..... ......+||++.|+|++++ |||.++.++|.
T Consensus 6 ~~~~~D~~~~~-----~~~--~~~~~~~~--------------------~~~~~~~GG~~~N~a~~l~-~lg~~~~~i~~ 57 (303)
T TIGR03168 6 LNPAIDLTIEV-----DGL--TPGEVNRV--------------------AAVRKDAGGKGINVARVLA-RLGAEVVATGF 57 (303)
T ss_pred cchHHeEEEEc-----Ccc--ccCceeec--------------------CcccccCCcchhhHHHHHH-HcCCCeEEEEE
Confidence 47889999998 444 22433322 3678999999999999999 89999999999
Q ss_pred ecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCch------hhhCCccEEEE
Q 028446 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSKWLVL 176 (209)
Q Consensus 103 vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~------~~l~~~~~v~~ 176 (209)
+|+| +|+.+++.|++.||++.++... ..|+.++++++++|+|+.+.+.+. .+++++++. +.+++++++|+
T Consensus 58 vG~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i 133 (303)
T TIGR03168 58 LGGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESSGEETELNEPGP--EISEEELEQLLEKLRELLASGDIVVI 133 (303)
T ss_pred eCCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCCCCEEEEeCcCC--CCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 9999 7999999999999999988865 467788888888888887766654 466665541 34789999999
Q ss_pred eccc---CCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 177 RFGM---FNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 177 ~~~~---~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++.. .+.+.+..+++.++++|++++||++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~ 167 (303)
T TIGR03168 134 SGSLPPGVPPDFYAQLIAIARKRGAKVILDTSGE 167 (303)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcH
Confidence 8432 146778889999999999999999863
No 43
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.76 E-value=2.6e-17 Score=140.66 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=119.5
Q ss_pred CCceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhc
Q 028446 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (209)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rl 93 (209)
++++|++|| ++++|+++++ |+ .....+||+++|+|.+++ ||
T Consensus 10 ~~~~vlvvG-~~~~D~i~~~------------g~-------------------------~~~~~~GG~a~N~A~ala-rL 50 (335)
T PLN02630 10 PQRRVLIVG-NYCHDVLIQN------------GS-------------------------VTAESLGGAASFISNVLD-AL 50 (335)
T ss_pred CCCCEEEEe-eeeeeEEEeC------------Cc-------------------------EEEEecCcHHHHHHHHHH-Hc
Confidence 688999999 9999999875 21 245789999999999999 89
Q ss_pred CCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcC-----CCCeeEEecCCcCCCCCcccCchhhh
Q 028446 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-----SGNRTMRPCLSNAVKIQADELIAEDV 168 (209)
Q Consensus 94 G~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~-----~G~rt~~~~~ga~~~l~~~~i~~~~l 168 (209)
|.++.++|++|+|.. .+|+...+.....+|+.++++.++ +|+|+++.+.+++..+++++++...+
T Consensus 51 G~~~~lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~~~~ 120 (335)
T PLN02630 51 SVECELVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDMRY 120 (335)
T ss_pred CCceEEEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCHHHh
Confidence 999999999999952 377765554433389999998876 57899999999999999999986567
Q ss_pred CCccEEEEecccCCHHHHHHHHHHHHH-----CCCeEEEeCCCC
Q 028446 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQ-----EGLSVSMDLASF 207 (209)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~l~~~a~~-----~g~~v~~D~~~~ 207 (209)
..++++++...+ +.+...++++.|+. +|+.++|||++.
T Consensus 121 ~~~~~~~l~~ei-~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~ 163 (335)
T PLN02630 121 EFGMAVGVAGEI-LPETLERMVEICDVVVVDIQALIRVFDPVDG 163 (335)
T ss_pred cccceeeecCCC-cHHHHHHHHHHhhhheeccCceEEecCCccc
Confidence 888899997554 56788899999988 899999999874
No 44
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.71 E-value=2.5e-16 Score=129.18 Aligned_cols=137 Identities=18% Similarity=0.149 Sum_probs=102.2
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
+|+++| .+++|++... + +....+||+++|+|++++ +||.+
T Consensus 1 ~il~iG-~~~iD~~~~~------------~--------------------------~~~~~~GG~~~Nva~~la-~lG~~ 40 (254)
T cd01937 1 KIVIIG-HVTIDEIVTN------------G--------------------------SGVVKPGGPATYASLTLS-RLGLT 40 (254)
T ss_pred CeEEEc-ceeEEEEecC------------C--------------------------ceEEecCchhhhHHHHHH-HhCCC
Confidence 589999 9999998753 1 356889999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~ 176 (209)
+.++|.+|+|..|+ ++.|++.||++.. .....|+.+.+.++.+|+|+++.+.++...+... ...+.+++++|+
T Consensus 41 ~~~i~~vG~D~~g~--~~~l~~~gv~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 113 (254)
T cd01937 41 VKLVTKVGRDYPDK--WSDLFDNGIEVIS--LLSTETTTFELNYTNEGRTRTLLAKCAAIPDTES---PLSTITAEIVIL 113 (254)
T ss_pred eEEEEeeCCCchHH--HHHHHHCCcEEEE--ecCCCeEEEEEEecCCCCeeeeeccccCCccccc---ccccCcccEEEE
Confidence 99999999999999 6889999999643 2333566666666767899888777754333221 234678999999
Q ss_pred ecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 177 ~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+. + +.+....+.+. .++|++|+++
T Consensus 114 ~~-~-~~~~~~~~~~~----~~~v~~D~~~ 137 (254)
T cd01937 114 GP-V-PEEISPSLFRK----FAFISLDAQG 137 (254)
T ss_pred CC-C-cchhcHHHHhh----hhheeEcccc
Confidence 84 2 43433344332 2899999975
No 45
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.70 E-value=3e-16 Score=130.91 Aligned_cols=157 Identities=25% Similarity=0.341 Sum_probs=131.5
Q ss_pred EEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCe
Q 028446 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (209)
Q Consensus 18 v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~ 97 (209)
|+.+-.|+.+|+++.+ +++ ..|...++ ......+||+|.|+|..|+ +||.++
T Consensus 2 I~TvTLNPaiD~~~~l-----~~l--~~g~vNr~--------------------~~~~~~aGGKGINVa~vL~-~lG~~~ 53 (310)
T COG1105 2 IYTVTLNPALDYTVFL-----DEL--ELGEVNRV--------------------RAVTKTAGGKGINVARVLK-DLGIPV 53 (310)
T ss_pred eEEEecChhHhheeec-----ccc--cccceeee--------------------ccceecCCCCceeHHHHHH-HcCCCc
Confidence 4555568999999998 433 34555553 3788999999999999999 899999
Q ss_pred EEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcC-CCCeeEEecCCcCCCCCcccCch------hhhCC
Q 028446 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRPCLSNAVKIQADELIA------EDVKG 170 (209)
Q Consensus 98 ~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~-~G~rt~~~~~ga~~~l~~~~i~~------~~l~~ 170 (209)
...|.+|.+ .|+++.+.|++.||...++.+. ++|+.++.+.+. +|+.|-+..+|. .+++++++. ..+++
T Consensus 54 ~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~-g~TRinvki~~~~~~~~Tein~~Gp--~is~~~~~~~l~~~~~~l~~ 129 (310)
T COG1105 54 TALGFLGGF-TGEFFVALLKDEGIPDAFVEVK-GDTRINVKILDEEDGEETEINFPGP--EISEAELEQFLEQLKALLES 129 (310)
T ss_pred eEEEecCCc-cHHHHHHHHHhcCCCceEEEcc-CCCeeeEEEEecCCCcEEEecCCCC--CCCHHHHHHHHHHHHHhccc
Confidence 999999998 9999999999999999988865 799999999986 566788887775 688877752 34778
Q ss_pred ccEEEEeccc---CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 171 SKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 171 ~~~v~~~~~~---~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
.|+|++++++ .|.+.+.++++.++++|++|++|.+.
T Consensus 130 ~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 130 DDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 9999999876 24789999999999999999999875
No 46
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.62 E-value=5.9e-15 Score=122.66 Aligned_cols=124 Identities=21% Similarity=0.170 Sum_probs=88.9
Q ss_pred ceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEE--cCCCCeeEEe
Q 028446 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLV--DASGNRTMRP 150 (209)
Q Consensus 74 ~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~--~~~G~rt~~~ 150 (209)
....+||+++|+|.+++ ||| ++.++|.+|+| +|+.+++.|+++||+++++.+.+. +|....... +.+++++...
T Consensus 20 ~~~~~GG~a~N~a~~la-~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~ 96 (277)
T cd01946 20 VDKALGGSATYFSLSAS-YFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDT 96 (277)
T ss_pred eeeccCchHHHHHHHHH-Hhc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhh
Confidence 44778999999999999 898 69999999999 899999999999999999988654 552211110 1123344433
Q ss_pred cCCcCCCCCcccCchhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 151 CLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 151 ~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+....+++. + ...+++++++|++. + +++...++++.+++. .+|+|||.
T Consensus 97 ~~~~~~~~~~~-~-~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~~-~~v~~D~~ 146 (277)
T cd01946 97 DLNVFADFDPQ-L-PEHYKDSEFVFLGN-I-APELQREVLEQVKDP-KLVVMDTM 146 (277)
T ss_pred hhhHHhhcCCC-C-hHHhhcCCEEEECC-C-CHHHHHHHHHHHHhC-CEEEEccH
Confidence 32222233321 2 24578899999984 2 567778888888877 89999973
No 47
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.6e-14 Score=115.20 Aligned_cols=163 Identities=20% Similarity=0.340 Sum_probs=127.9
Q ss_pred CceEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcC
Q 028446 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (209)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG 94 (209)
...|+++| .+.+|++-.+ +.+|.+.. ..+. .+-.+.-||.+.|+..++. +||
T Consensus 4 ~k~VLcVG-~~~lD~iTiv-----d~~~fe~~-~~r~--------------------~~g~wqRgG~asNvcTvlr-lLG 55 (308)
T KOG2947|consen 4 PKQVLCVG-CTVLDVITIV-----DKYPFEDS-EIRC--------------------LSGRWQRGGNASNVCTVLR-LLG 55 (308)
T ss_pred cceEEEec-cEEEEEEEec-----cCCCCCcc-ceeh--------------------hhhhhhcCCCcchHHHHHH-HhC
Confidence 36799999 9999999998 77887643 3221 2567889999999999998 999
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEE-cCCCCeeEEecCCcCCCCCcccCchhhhCCccE
Q 028446 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV-DASGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (209)
Q Consensus 95 ~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~-~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~ 173 (209)
.++.|+|.+.....-+++++.|++.|||+++-...+...+++.+++ ...|.||++.+..+.+.++..|+..-.+.+..|
T Consensus 56 ~~cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kvdl~qy~W 135 (308)
T KOG2947|consen 56 APCEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKVDLTQYGW 135 (308)
T ss_pred CchheeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhcccceeee
Confidence 9999999999999999999999999999999887666555555545 457999999998888999999988667889999
Q ss_pred EEEecccCCHHHHHHHHHHH-------HHCCCeEEEeCCC
Q 028446 174 LVLRFGMFNFEVIQAAIRIA-------KQEGLSVSMDLAS 206 (209)
Q Consensus 174 v~~~~~~~~~~~~~~l~~~a-------~~~g~~v~~D~~~ 206 (209)
||+...- |.+...-+.... .+.++.|++|.-.
T Consensus 136 ihfE~Rn-p~etlkM~~~I~~~N~r~pe~qrI~vSvd~en 174 (308)
T KOG2947|consen 136 IHFEARN-PSETLKMLQRIDAHNTRQPEEQRIRVSVDVEN 174 (308)
T ss_pred EEEecCC-hHHHHHHHHHHHHhhcCCCccceEEEEEEecC
Confidence 9999532 555433222211 1256888888743
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=5.2e-13 Score=113.57 Aligned_cols=166 Identities=20% Similarity=0.307 Sum_probs=117.4
Q ss_pred CCceEEEecCceeEEEEeecChh-HHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhh
Q 028446 14 QAALILGLQPAALIDHVARVDWS-LLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (209)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~-~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~r 92 (209)
.+.+|+++| ..++|.++...-+ +.++-|.+- .+ -......+|| ++|+|.+++ -
T Consensus 9 ~~~kVLVvG-DvmLDrY~~G~~~RISPEAPVPV--------------v~---------v~~e~~rlGG-AaNVa~Nia-s 62 (467)
T COG2870 9 KQAKVLVVG-DVMLDRYWYGKVSRISPEAPVPV--------------VK---------VEKEEERLGG-AANVAKNIA-S 62 (467)
T ss_pred cCCcEEEEc-ceeeeeeccccccccCCCCCCce--------------EE---------eccccccccc-HHHHHHHHH-H
Confidence 678999999 9999999886332 223444331 10 0256788898 999999999 7
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEe-cCCcCCCCC-cccCc---hhh
Q 028446 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP-CLSNAVKIQ-ADELI---AED 167 (209)
Q Consensus 93 lG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~-~~ga~~~l~-~~~i~---~~~ 167 (209)
||.++.++|.+|+|..|+.+.+.|...+++...++....+|..-.=++. +.++++. ......... ...+. ...
T Consensus 63 LGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s--~nQQllRvD~Ee~~~~~~~~~ll~~~~~~ 140 (467)
T COG2870 63 LGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLS--RNQQLLRLDFEEKFPIEDENKLLEKIKNA 140 (467)
T ss_pred cCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeec--ccceEEEecccccCcchhHHHHHHHHHHH
Confidence 9999999999999999999999999999997666655457766555553 3344443 222111111 11111 356
Q ss_pred hCCccEEEEe-cccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 168 VKGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 168 l~~~~~v~~~-~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+++.+.+.++ |.-.-...+..+++.||+.|++|..||-+.
T Consensus 141 l~~~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg~ 181 (467)
T COG2870 141 LKSFDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKGK 181 (467)
T ss_pred hhcCCEEEEeccccccchhHHHHHHHHHHcCCcEEECCCCc
Confidence 7899999999 754212227789999999999999999764
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.30 E-value=3.3e-11 Score=94.55 Aligned_cols=93 Identities=26% Similarity=0.365 Sum_probs=77.7
Q ss_pred eEEEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCC
Q 028446 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (209)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~ 96 (209)
.|+++| ++++|.++.+ +++|.++ ..... ......+||++.|+|.+++ +||.+
T Consensus 1 ~v~~iG-~~~~D~~~~~-----~~~~~~~-~~~~~--------------------~~~~~~~GG~~~n~a~~l~-~LG~~ 52 (196)
T cd00287 1 RVLVVG-SLLVDVILRV-----DALPLPG-GLVRP--------------------GDTEERAGGGAANVAVALA-RLGVS 52 (196)
T ss_pred CEEEEc-cceEEEEEEe-----ccCCCCC-CeEEe--------------------ceeeecCCCcHHHHHHHHH-HCCCc
Confidence 489999 9999999998 6677653 33322 3678999999999999999 89999
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~ 176 (209)
+.++| ++++|+
T Consensus 53 ~~~~~---------------------------------------------------------------------~~~v~i 63 (196)
T cd00287 53 VTLVG---------------------------------------------------------------------ADAVVI 63 (196)
T ss_pred EEEEE---------------------------------------------------------------------ccEEEE
Confidence 99999 899999
Q ss_pred ecccCCH-HHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 177 RFGMFNF-EVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 177 ~~~~~~~-~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++.. +. +.+.++++.+++.|+++++|+++.
T Consensus 64 ~~~~-~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 64 SGLS-PAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred eccc-CcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 9644 43 678889999999999999999864
No 50
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.77 E-value=3.3e-08 Score=85.67 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=85.5
Q ss_pred EEecCceeEEEEeecChhHHHhCCCCCCCceecCHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeE
Q 028446 19 LGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG 98 (209)
Q Consensus 19 ~~iG~~~~vD~~~~~~~~~l~~~p~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~ 98 (209)
+++| ...+|+.+.++++ + ..+|.+ ++.......||.+.|.|.+++ |||.++.
T Consensus 344 v~vG-a~i~D~~~k~d~d----~-K~dG~s---------------------y~~~~~Qa~GGVarN~A~a~~-~lg~d~~ 395 (614)
T KOG3009|consen 344 VSVG-ATIVDFEAKTDED----V-KDDGGS---------------------YNGQVVQAMGGVARNHADALA-RLGCDSV 395 (614)
T ss_pred eeec-ceEEEeEEeeccc----c-cccCCc---------------------ccchhhhhccchhhhHHHHHH-HhcCCee
Confidence 8999 9999999999542 2 223433 235678899999999999999 9999999
Q ss_pred EEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEec
Q 028446 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178 (209)
Q Consensus 99 ~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~ 178 (209)
|+++||+|. +++ |.... .....+...+++ ++++++++.
T Consensus 396 liSavG~d~-----------------------------------n~~--~~~~~----~~~~~e~~~dl~-~a~~I~~Ds 433 (614)
T KOG3009|consen 396 LISAVGDDN-----------------------------------NGH--FFRQN----SHKIVESNEDLL-SADFILLDS 433 (614)
T ss_pred EEEEeccCC-----------------------------------cch--hhhhh----hhhhhhhhhhhh-cCCEEEEcC
Confidence 999999992 111 10000 111112223344 899999998
Q ss_pred ccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 179 GMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 179 ~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++ +...+.++++ |+++.++|+|.|.+.
T Consensus 434 Ni-S~~~Ma~il~-ak~~k~~V~fEPTd~ 460 (614)
T KOG3009|consen 434 NI-SVPVMARILE-AKKHKKQVWFEPTDI 460 (614)
T ss_pred CC-CHHHHHHHHH-hhhccCceEecCCCc
Confidence 87 6677788888 999999999999875
No 51
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.69 E-value=0.88 Score=32.85 Aligned_cols=94 Identities=10% Similarity=0.113 Sum_probs=54.6
Q ss_pred EEEec-CChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcC-CCCeeEEecC--CcCCCCCcccCchhhhCCccEEE
Q 028446 100 IGAYG-DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRPCL--SNAVKIQADELIAEDVKGSKWLV 175 (209)
Q Consensus 100 ig~vG-~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~-~G~rt~~~~~--ga~~~l~~~~i~~~~l~~~~~v~ 175 (209)
++.+| ....|..+++.|.++ -+.+.+.... ... .|.+--..++ .....+..++.+.+.+.++|+++
T Consensus 2 V~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEH-PDFELVALVS---------SSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHT-STEEEEEEEE---------STTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEE
T ss_pred EEEECCCCHHHHHHHHHHhcC-CCccEEEeee---------eccccCCeeehhccccccccceeEeecchhHhhcCCEEE
Confidence 45677 678899999999883 2222222111 011 1222101111 11123344444455678999999
Q ss_pred EecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 176 ~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+.. |.+...++...+.+.|+ .++|.++.
T Consensus 72 ~a~---~~~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 72 LAL---PHGASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp E-S---CHHHHHHHHHHHHHTTS-EEEESSST
T ss_pred ecC---chhHHHHHHHHHhhCCc-EEEeCCHH
Confidence 984 66777888888888998 78888764
No 52
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.28 E-value=7.6 Score=34.66 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhH---HHHHHHHHhCCCcccceee
Q 028446 52 AIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G---~~i~~~L~~~gVd~~~v~~ 128 (209)
..+.+|+.++.+.+. .......+|.+++.+..++ .++---.++. ..+-++ +.+...+++.|+++.++..
T Consensus 62 tv~~lE~~la~leg~-----~~av~~~SG~aAi~~al~a-ll~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 62 TLAAFEQKLAELEGG-----VGAVATASGQAAIMLAVLN-ICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-hcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 356778888877652 2556778888888877776 5542112222 334455 4444557888886554411
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCCH---HHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNF---EVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~~---~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.++++++....-++.++|++...-.|. -.+.++.+.|+++|+.++.|-.
T Consensus 134 ----------------------------~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T 185 (432)
T PRK06702 134 ----------------------------NLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNT 185 (432)
T ss_pred ----------------------------CCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECC
Confidence 123333332222456777776211132 1267788888899999998863
No 53
>PRK05968 hypothetical protein; Provisional
Probab=87.73 E-value=12 Score=32.78 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHH---HHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQ---LFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~---~i~~~L~~~gVd~~~v~~ 128 (209)
.+++|+.++++.+. .......+|.+++.+...+ .+.- +..++.. ..++. .+.+.++..|+++.++..
T Consensus 65 ~~~le~~lA~l~g~-----~~av~~~sG~~Ai~~al~a-l~~~Gd~Vl~~~---~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 65 VRAFEEMLAKLEGA-----EDARGFASGMAAISSTVLS-FVEPGDRIVAVR---HVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-HhCCCCEEEEeC---CCchHHHHHHHHHHHHcCceEEEeCC
Confidence 46777777776542 2445667777777655544 3432 2233322 22332 234456666666544310
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEec--cc-CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF--GM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~--~~-~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+ +++++. +.+.+.++|+++. .. .+..-+.++.+.|+++|+++++|-.
T Consensus 136 --------------~---------------d~~~l~-~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a 185 (389)
T PRK05968 136 --------------R---------------DEEAVA-KALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNS 185 (389)
T ss_pred --------------C---------------CHHHHH-HhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 0 223332 2235567777762 11 1345577888889999999999863
No 54
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=87.63 E-value=7 Score=34.18 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcC-CCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG-VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG 131 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG-~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~ 131 (209)
.+++++.++.+.+. .......||..++.+...+ .+. .+..++....=...-..+.+.+++.|+++.++...
T Consensus 63 ~~~le~~la~l~g~-----~~~v~~ssG~~Ai~~al~a-l~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 134 (390)
T PRK08133 63 VTMFQERLAALEGA-----EACVATASGMAAILAVVMA-LLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT-- 134 (390)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-HhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC--
Confidence 45667777776542 3556777888877766554 342 22233322111111233445566777765443321
Q ss_pred CceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 132 PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 132 ~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+++++....-.+.++|+++..-.| ...+.++.+.|+++|+.++.|-.
T Consensus 135 ---------------------------d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t 184 (390)
T PRK08133 135 ---------------------------DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNC 184 (390)
T ss_pred ---------------------------CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence 112221111134566776511111 11246677778888888888863
No 55
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=85.69 E-value=1.4 Score=36.33 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=30.2
Q ss_pred hhhCCccEEEEe-cccCC--HHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 166 EDVKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 166 ~~l~~~~~v~~~-~~~~~--~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+..+.++.+++. +.+.+ .+.+..+.+.|++.|+|++|||-..
T Consensus 45 e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgv 89 (246)
T PF02110_consen 45 EFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGV 89 (246)
T ss_dssp HHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTB
T ss_pred HHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 455678889999 65533 4678888999999999999999653
No 56
>PRK06444 prephenate dehydrogenase; Provisional
Probab=84.88 E-value=5 Score=31.81 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=40.6
Q ss_pred EEecC-ChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecc
Q 028446 101 GAYGD-DQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFG 179 (209)
Q Consensus 101 g~vG~-D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~ 179 (209)
+.||. ...|+++...|++.|..+. +.++|+|.++.
T Consensus 4 ~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------~~~~DlVilav- 39 (197)
T PRK06444 4 IIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------IKKADHAFLSV- 39 (197)
T ss_pred EEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------ECCCCEEEEeC-
Confidence 44444 7799999999999996642 24788888873
Q ss_pred cCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Q 028446 180 MFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (209)
Q Consensus 180 ~~~~~~~~~l~~~a~~~g~~v~~D~~~~~ 208 (209)
|...+.+++++.. .++.|.++.|
T Consensus 40 --Pv~~~~~~i~~~~----~~v~Dv~SvK 62 (197)
T PRK06444 40 --PIDAALNYIESYD----NNFVEISSVK 62 (197)
T ss_pred --CHHHHHHHHHHhC----CeEEeccccC
Confidence 6566666665432 3577888875
No 57
>PRK07050 cystathionine beta-lyase; Provisional
Probab=84.80 E-value=15 Score=32.16 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHH---HHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQ---LFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~---~i~~~L~~~gVd~~~v~~ 128 (209)
.+++++.++++.+. .......||..++.+...+ .++- +..++.. ..++. .+...++..|+++.++..
T Consensus 67 ~~~Le~~lA~l~g~-----~~~l~~~sgt~Ai~~~l~a-l~~~GD~Vl~~~---~~y~~~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 67 SLALAQRLAEIEGG-----RHALLQPSGLAAISLVYFG-LVKAGDDVLIPD---NAYGPNRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred HHHHHHHHHHHhCC-----CeEEEeccHHHHHHHHHHH-HhCCCCEEEEec---CCcccHHHHHHHHHHhcCeEEEEECC
Confidence 46677777776542 3566778888888887776 4532 2233222 22332 233445666776553321
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEec--cc-CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF--GM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~--~~-~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
. +. +++....-.+.++|+++. +. .+...+.++.+.|+++|+.+++|-.
T Consensus 138 ~-------------~~----------------~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 138 L-------------IG----------------AGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred C-------------CH----------------HHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECC
Confidence 0 00 111111113466777661 11 1345567778888888888888854
No 58
>PRK05967 cystathionine beta-lyase; Provisional
Probab=84.73 E-value=18 Score=31.93 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHH---HHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQ---LFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~---~i~~~L~~~gVd~~~v~~ 128 (209)
.+.+++.++.+.+. ........|.++..+..++ .+.- +..++. ++.++. ++.+.+++.|+++.++..
T Consensus 66 ~~~Le~~la~le~~-----~~~v~~sSG~aAi~~~l~a-ll~~GD~Vlv~---~~~Y~~~~~l~~~~l~~~Gi~v~~vd~ 136 (395)
T PRK05967 66 TDALCKAIDALEGS-----AGTILVPSGLAAVTVPFLG-FLSPGDHALIV---DSVYYPTRHFCDTMLKRLGVEVEYYDP 136 (395)
T ss_pred HHHHHHHHHHHhCC-----CCEEEECcHHHHHHHHHHH-hcCCCCEEEEc---cCCcHHHHHHHHHHHHhcCeEEEEeCC
Confidence 45677777776542 2345555576666666655 4532 333333 333443 334667888887654321
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEec-cc--CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF-GM--FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~-~~--~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
. . .+.+....-++.++|+++. .- .....+.++.+.|+++|+.+++|-.
T Consensus 137 ~--------------~---------------~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 137 E--------------I---------------GAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred C--------------C---------------HHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence 0 0 0112211123577888882 21 1245577888889999999999854
No 59
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=83.43 E-value=1.8 Score=35.83 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=38.6
Q ss_pred CcCCCCCcccCc-hhhhCCccEEEEe-cccCC--HHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 153 SNAVKIQADELI-AEDVKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 153 ga~~~l~~~~i~-~~~l~~~~~v~~~-~~~~~--~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
|+.+-+..+.-. .+..+-++.+++. +.+.. .+.++.+.+.|++.|+|++|||-..
T Consensus 37 GaSP~Ma~~~eE~~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgv 95 (265)
T COG2145 37 GASPVMADAPEEVEEFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGV 95 (265)
T ss_pred CCCchhccCHHHHHHHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccC
Confidence 665555432222 3455677788888 55533 5778889999999999999999653
No 60
>PRK09028 cystathionine beta-lyase; Provisional
Probab=82.99 E-value=21 Score=31.45 Aligned_cols=115 Identities=13% Similarity=0.016 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHHH---HHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQL---FVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~~---i~~~L~~~gVd~~~v~~ 128 (209)
.+.+++.++.+.+. .......||.++..+..++ .+.- +..++. ++.++.. +.+.+++.|+++.++..
T Consensus 63 ~~~Le~~iA~le~~-----~~~~~~~sG~~Ai~~~l~a-ll~~GD~Vvv~---~~~Y~~t~~l~~~~l~~~Gi~v~~v~~ 133 (394)
T PRK09028 63 HFAFQAAIVELEGG-----AGTALYPSGAAAISNALLS-FLKAGDHLLMV---DSCYEPTRDLCDKILKGFGIETTYYDP 133 (394)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-HhCCCCEEEEE---CCCcHHHHHHHHHhhhhcceEEEEECC
Confidence 45777788777542 2567888888887777665 4432 222222 3334433 23445566665433211
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+ .+.+....-++.++|+++..-.| ...+.++.+.|+++|+.+++|-.
T Consensus 134 ~~-----------------------------~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t 184 (394)
T PRK09028 134 MI-----------------------------GEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNT 184 (394)
T ss_pred CC-----------------------------HHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 00 01121111135778888721112 45577888899999999999953
No 61
>PRK05939 hypothetical protein; Provisional
Probab=82.91 E-value=24 Score=30.99 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHH--HHHHHHHhCCCcccceeec
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQ--LFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~--~i~~~L~~~gVd~~~v~~~ 129 (209)
.+.+|+.++++.+. ........|.++..+...+ .++- +..++. +..++. .+.+.+++.|+...++..
T Consensus 49 ~~~lE~~la~leg~-----~~~v~~ssG~~Ai~~~l~a-ll~~Gd~Vv~~---~~~y~~t~~~~~~l~~~G~~v~~v~~- 118 (397)
T PRK05939 49 TAALEAKITKMEGG-----VGTVCFATGMAAIAAVFLT-LLRAGDHLVSS---QFLFGNTNSLFGTLRGLGVEVTMVDA- 118 (397)
T ss_pred HHHHHHHHHHHhCC-----CeEEEeCCHHHHHHHHHHH-HcCCCCEEEEC---CCccccHHHHHHHHHhcCCEEEEECC-
Confidence 45778888887652 2345555566666655554 4432 223332 223432 334557777776543321
Q ss_pred CCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 130 ~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+.+++....-.+.++|++...-.| ..-+.++.+.|+++|+.++.|-.
T Consensus 119 ----------------------------~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t 169 (397)
T PRK05939 119 ----------------------------TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNT 169 (397)
T ss_pred ----------------------------CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence 0223332222245777877621112 33467788889999999999964
No 62
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=82.68 E-value=27 Score=30.14 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=25.0
Q ss_pred CCccEEEEe-cc-c-CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLR-FG-M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~-~~-~-~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|++. .. . .+...+.++.+.|+++|+.++.|-.
T Consensus 135 ~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 135 PNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 356777775 21 1 1245577888888899999998843
No 63
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=82.17 E-value=26 Score=30.57 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHHHH---HHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLF---VSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~~i---~~~L~~~gVd~~~v~~ 128 (209)
.+.+|+.++++.+. .......+|.+++.+...+ .++- +..++. +..++... ...+++.|+++.++
T Consensus 52 ~~~lE~~lA~l~g~-----~~~~~~~sG~~Ai~~al~a-ll~~GD~Vl~~---~~~y~~t~~~~~~~~~~~gi~v~~~-- 120 (377)
T TIGR01324 52 HFALQDAMCELEGG-----AGCYLYPSGLAAVTNSILA-FVKAGDHVLMV---DSAYEPTRYFCDIVLKRMGVDITYY-- 120 (377)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECcHHHHHHHHHHH-hcCCCCEEEEc---CCCcHHHHHHHHHHHHhcCcEEEEE--
Confidence 46788888887652 3667788999988887776 5542 223322 33444322 23455566654322
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEec--cc-CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF--GM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~--~~-~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+..- .+++....-++.++|+++. +. .....+.++.+.|+++|+.++.|-.
T Consensus 121 ------------d~~~---------------~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t 173 (377)
T TIGR01324 121 ------------DPLI---------------GEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNT 173 (377)
T ss_pred ------------CCCC---------------HHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 1100 0112111113577788762 11 1244567888889999999999864
No 64
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=81.32 E-value=22 Score=31.24 Aligned_cols=118 Identities=11% Similarity=-0.059 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHHHHHHHHHhCCCcccceeecCC
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG 131 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~ 131 (209)
.+++|+.++.+.+. .+.....+|.+++.+...+ .+.- +..++...-=...-..+.+.+++.|+.+.++..
T Consensus 72 ~~~le~~lA~l~g~-----~~al~~~sG~~Ai~~~l~a-ll~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~--- 142 (403)
T PRK07810 72 VSMFEERLRLIEGA-----EACFATASGMSAVFTALGA-LLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG--- 142 (403)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECChHHHHHHHHHH-HhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC---
Confidence 56777777777652 3567777787777766554 3422 233333210011123344556667776544321
Q ss_pred CceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 132 PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 132 ~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+++++....-++.++|+++....| .-.+.++.+.|+++|+.+++|-.
T Consensus 143 --------------------------~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 143 --------------------------EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred --------------------------CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 0222222211135677776521111 11256677778888888888854
No 65
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=81.31 E-value=19 Score=31.49 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhH---HHHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G---~~i~~~L~~~gVd~~~v~~ 128 (209)
.+++|+.++++.+. .......+|.+++.+...+ .++- +..++.. ..++ ..+...+...|+.+.++..
T Consensus 61 ~~~le~~lA~l~g~-----~~av~~~sG~~Ai~~~l~a-l~~~Gd~Vi~~~---~~y~~t~~~~~~~~~~~G~~~~~vd~ 131 (391)
T TIGR01328 61 VSNLEGRIAFLEGT-----EAAVATSSGMGAIAATLLT-ILKAGDHLISDE---CLYGCTFALLEHALTKFGIQVDFINM 131 (391)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-HhCCCCEEEEec---CcchHHHHHHHHHHhcCCeEEEEECC
Confidence 46677777776652 2455666777777666554 4432 2222221 1232 2333444555544332211
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+ +++++....-.+.++|+++....| ...+.++.+.|+++|+.+++|-.
T Consensus 132 --------------~---------------d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a 182 (391)
T TIGR01328 132 --------------A---------------IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNT 182 (391)
T ss_pred --------------C---------------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 0 122222111135667777621111 11255677778888888888864
No 66
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=81.11 E-value=14 Score=31.73 Aligned_cols=92 Identities=18% Similarity=0.259 Sum_probs=52.6
Q ss_pred CeEEEEEecCChhHHHHHHHHHhCCCcccceee--cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccE
Q 028446 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (209)
Q Consensus 96 ~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~--~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~ 173 (209)
++..+|..| ..|..+++.|.+.+.....+.. ..... |++ +.+.+ ..+..++.+...++++|+
T Consensus 6 ~IaIvGATG--~vG~eLlrlL~~~~hP~~~l~~v~s~~~a----------G~~--l~~~~--~~l~~~~~~~~~~~~vD~ 69 (336)
T PRK05671 6 DIAVVGATG--TVGEALVQILEERDFPVGTLHLLASSESA----------GHS--VPFAG--KNLRVREVDSFDFSQVQL 69 (336)
T ss_pred EEEEEccCC--HHHHHHHHHHhhCCCCceEEEEEECcccC----------CCe--eccCC--cceEEeeCChHHhcCCCE
Confidence 455555555 4799999999965543322111 11111 222 11222 123333333223578999
Q ss_pred EEEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 174 v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+++.. |.+....++..+.++|++ ++|.++.
T Consensus 70 vFla~---p~~~s~~~v~~~~~~G~~-VIDlS~~ 99 (336)
T PRK05671 70 AFFAA---GAAVSRSFAEKARAAGCS-VIDLSGA 99 (336)
T ss_pred EEEcC---CHHHHHHHHHHHHHCCCe-EEECchh
Confidence 99873 556677888888888875 7887753
No 67
>PRK08114 cystathionine beta-lyase; Provisional
Probab=80.64 E-value=19 Score=31.75 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhH---HHHHHHHHhCCCcccce
Q 028446 52 AIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRL 126 (209)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G---~~i~~~L~~~gVd~~~v 126 (209)
..+.+|+.++.|.+. ......+.|.++..+..++ .+.. +..+++ ++.+| +.+.+.|++.||++.++
T Consensus 63 t~~~le~~la~LEg~-----~~a~~~~SGmaAi~~~~~~-ll~~GD~Vv~~---~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 63 THFSLQEAMCELEGG-----AGCALYPCGAAAVANAILA-FVEQGDHVLMT---GTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred hHHHHHHHHHHHhCC-----CeEEEEhHHHHHHHHHHHH-HcCCCCEEEEe---CCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 467888889888762 3567778888888887776 5543 323333 44454 34446678888876553
No 68
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.41 E-value=17 Score=28.25 Aligned_cols=107 Identities=10% Similarity=0.126 Sum_probs=60.8
Q ss_pred CCeEEEEEec--CChhHHHHHHHHHhCCCcccceeecC----C-CceeEEEEEcCCCCeeEEecCCcCC-C-----CCcc
Q 028446 95 VPCGLIGAYG--DDQQGQLFVSNMQFSGVDVSRLRMKR----G-PTGQCVCLVDASGNRTMRPCLSNAV-K-----IQAD 161 (209)
Q Consensus 95 ~~~~~ig~vG--~D~~G~~i~~~L~~~gVd~~~v~~~~----~-~T~~~~i~~~~~G~rt~~~~~ga~~-~-----l~~~ 161 (209)
.+...-|.-| +-..-..+.+.|++.|...-.+...+ + .+|+.++=++ +|++..+.+.+... . ...+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHH
Confidence 3444555533 44566788999999988776655433 3 5666665553 68887776655421 1 1122
Q ss_pred cCc-------hhhhCCccEEEEe--cccC-CHHHHHHHHHHHHHCCCeEEE
Q 028446 162 ELI-------AEDVKGSKWLVLR--FGMF-NFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 162 ~i~-------~~~l~~~~~v~~~--~~~~-~~~~~~~l~~~a~~~g~~v~~ 202 (209)
.++ ..+++.+|++.++ +.+. ......++++..-+.+.++++
T Consensus 85 ~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kplia 135 (179)
T COG1618 85 GLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIA 135 (179)
T ss_pred HHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEE
Confidence 222 2355678999999 4331 122344555555555555444
No 69
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=80.12 E-value=27 Score=31.34 Aligned_cols=32 Identities=19% Similarity=-0.016 Sum_probs=26.7
Q ss_pred CceEecCChHHHHHHHHHhhcCC-CeEEEEEecC
Q 028446 73 PIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGD 105 (209)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~ 105 (209)
....+.||.+.-+|..++ ++|. +|.+-+.+..
T Consensus 100 ~~~~~mGGnAgimAn~la-~~g~~~Vil~~p~~~ 132 (445)
T cd01938 100 WDELRMGGNAGLMANRLA-GEGDLKVLLGVPQSS 132 (445)
T ss_pred CceEEeCChHHHHHHHHH-hcCCceEEEecCCCc
Confidence 457999999999999999 8998 8777766543
No 70
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=80.11 E-value=22 Score=30.64 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHH---HHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQ---LFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~---~i~~~L~~~gVd~~~v~~ 128 (209)
.+++|+.++++.+. .......+|.++|.+...+ .+.- +..++.. ..++. .+.+.++..|+.+.++..
T Consensus 42 ~~~le~~la~l~g~-----~~a~~~~sG~~Ai~~~l~~-l~~~gd~Vl~~~---~~y~~~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 42 VDALEKKLAALEGG-----EAALAFSSGMAAISTVLLA-LLKAGDHVVASD---DLYGGTYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred HHHHHHHHHHHHCC-----CCEEEEcCHHHHHHHHHHH-HcCCCCEEEECC---CCcchHHHHHHHHHhhcCeEEEEeCC
Confidence 46677777776542 3566778888888877765 4432 2233322 22332 233334455544332211
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhh-CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV-KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l-~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
+ +++++. +.+ ++.++|+++....| ..-+.++.+.|+++|+.+++|-
T Consensus 113 --------------~---------------d~~~l~-~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~ 162 (369)
T cd00614 113 --------------D---------------DPEALE-AAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDN 162 (369)
T ss_pred --------------C---------------CHHHHH-HhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 0 022222 122 25667776621111 1125577778888899888886
Q ss_pred C
Q 028446 205 A 205 (209)
Q Consensus 205 ~ 205 (209)
.
T Consensus 163 t 163 (369)
T cd00614 163 T 163 (369)
T ss_pred C
Confidence 4
No 71
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=79.78 E-value=27 Score=30.31 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHH---HHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQ---LFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~---~i~~~L~~~gVd~~~v~~ 128 (209)
.+++++.++++.+. .......+|.+++.+...+ .+.- +..++. +..+|. .+.+.+++.|+++.++..
T Consensus 56 ~~~le~~la~l~g~-----~~~~~~~sG~~Ai~~al~a-l~~~Gd~Vl~~---~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 56 VAAFEERIAALEGA-----ERAVATATGMSAIQAALMT-LLQAGDHVVAS---RSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-HhCCCCEEEEe---cCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 56677777776542 2556778888888876655 4432 223332 233442 344556777776543321
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
. +++++....-.+.++|+++....| ...+.++.+.|+++|+.+++|-.
T Consensus 127 ~-----------------------------d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 127 T-----------------------------DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred C-----------------------------CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 1 112221111124566776521111 12245667777888888888864
No 72
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=79.23 E-value=24 Score=31.52 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcC-CCeEEEEEecCChhH---HHHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG-VPCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG-~~~~~ig~vG~D~~G---~~i~~~L~~~gVd~~~v~~ 128 (209)
.+.+++.++++.+. ........|.+++.+..++ .+. .+..+++ +..+| ..+.+.+++.|+.+.++.
T Consensus 71 ~~~le~~la~l~g~-----~~~v~fsSG~~Ai~~al~~-ll~~Gd~VI~~---~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 71 VEALENRIASLEGG-----VHAVAFASGQAAETAAILN-LAGAGDHIVTS---PRLYGGTETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred HHHHHHHHHHHhCC-----CeEEEeCCHHHHHHHHHHH-hcCCCCEEEEC---CCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence 56677777776542 2455566666666655554 342 1223322 33344 334566777777655443
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+ + +++++....-++.++|++...-.| ..-+.++.+.|+++|+.+++|-.
T Consensus 141 ~~--~-------------------------d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 141 NP--D-------------------------DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred CC--C-------------------------CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECC
Confidence 11 0 112222111124556666511111 12256777788889999999976
No 73
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=79.15 E-value=25 Score=30.31 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=53.1
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCccc--CchhhhCCcc
Q 028446 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE--LIAEDVKGSK 172 (209)
Q Consensus 95 ~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~--i~~~~l~~~~ 172 (209)
.++.++|..|. .|+.+++.|++......-+.... -...-|++..- +.+- .+...+ .+...+++.|
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~A--------S~rSaG~~~~~-f~~~--~~~v~~~~~~~~~~~~~D 68 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEERHFPFEELVLLA--------SARSAGKKYIE-FGGK--SIGVPEDAADEFVFSDVD 68 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHhcCCCcceEEEEe--------cccccCCcccc-ccCc--cccCccccccccccccCC
Confidence 45777777775 79999999999755544222211 11122444111 1111 011111 2233456899
Q ss_pred EEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 173 ~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+++++. +.+...++..++.++|+. ++|-++
T Consensus 69 ivf~~a---g~~~s~~~~p~~~~~G~~-VIdnsS 98 (334)
T COG0136 69 IVFFAA---GGSVSKEVEPKAAEAGCV-VIDNSS 98 (334)
T ss_pred EEEEeC---chHHHHHHHHHHHHcCCE-EEeCCc
Confidence 999983 335567888889999954 455443
No 74
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=78.77 E-value=23 Score=31.56 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=24.5
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|++...-.| ..-+.++.+.|+++|++++.|-.
T Consensus 148 ~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 148 PNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred CCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECC
Confidence 45677777721112 12256788888999999999965
No 75
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.01 E-value=6.8 Score=27.02 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=30.6
Q ss_pred hhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 166 ~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
..+.++|+|.+-....+..++..+-+.|++.++++++--
T Consensus 44 ~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 44 SKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 356789998887333367888888899999999998854
No 76
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=77.74 E-value=28 Score=31.01 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhH---HHHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G---~~i~~~L~~~gVd~~~v~~ 128 (209)
.+.+++.++.+.+. .......+|.++..+..++ .+.. +..++.. ..++ ..+.+.+++.|+++.++..
T Consensus 66 ~~~Le~~lA~leg~-----~~al~~~sG~~Ai~~al~~-ll~~GD~Vlv~~---~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 66 TDVFEKRIAALEGG-----IGALAVSSGQAAITYSILN-IASAGDEIVSSS---SLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-HhCCCCEEEEcc---CchhhHHHHHHHHHHhCCEEEEEECC
Confidence 56677777776652 3556667776666655554 3432 2333332 2232 2344556777776644421
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEe-cccCC---HHHHHHHHHHHHHCCCeEEEeC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLR-FGMFN---FEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~-~~~~~---~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
. +++++....-.+.++|++. ..- | .-.+.++.+.|+++|+.++.|-
T Consensus 137 ~-----------------------------d~e~l~~ai~~~tklV~l~sp~N-PtG~v~di~~I~~la~~~gi~vIvD~ 186 (431)
T PRK08248 137 S-----------------------------DPENFEAAITDKTKALFAETIGN-PKGDVLDIEAVAAIAHEHGIPLIVDN 186 (431)
T ss_pred C-----------------------------CHHHHHHhcCCCCeEEEEECCCC-CCCcccCHHHHHHHHHHcCCEEEEeC
Confidence 0 2222222111356777776 211 1 1124567778888899998886
Q ss_pred C
Q 028446 205 A 205 (209)
Q Consensus 205 ~ 205 (209)
.
T Consensus 187 t 187 (431)
T PRK08248 187 T 187 (431)
T ss_pred C
Confidence 4
No 77
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=77.64 E-value=22 Score=31.25 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=22.8
Q ss_pred CccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.++|+++..-.| .-.+.++.+.|+++|+.++.|-.
T Consensus 149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t 187 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNT 187 (398)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECC
Confidence 5677877621111 11245677788899999998864
No 78
>PRK07582 cystathionine gamma-lyase; Validated
Probab=77.56 E-value=32 Score=29.75 Aligned_cols=69 Identities=19% Similarity=0.058 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHHHHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~ 128 (209)
...+++.++++.+ .+.....+|..++.+...+ .++- +..++..-+-...-..+...+++.|+.+..+..
T Consensus 53 ~~~Le~~lA~l~~------~~~v~~~sG~~Ai~~~l~a-ll~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 53 WRALEAALGELEG------AEALVFPSGMAAITAVLRA-LLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred HHHHHHHHHHHcC------CCEEEECCHHHHHHHHHHH-hcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence 4566777776552 3566777777777666655 4543 333333222212223334557778887766543
No 79
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=77.12 E-value=2.8 Score=34.32 Aligned_cols=55 Identities=25% Similarity=0.173 Sum_probs=36.1
Q ss_pred CCcCCCCCcccCc-hhhhCCccEEEEe-cccCC--HHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 152 LSNAVKIQADELI-AEDVKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 152 ~ga~~~l~~~~i~-~~~l~~~~~v~~~-~~~~~--~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
.|+.+-+....-. .+.++.++.+++. +.+.+ .+.+..+++.+++.++++++||..
T Consensus 30 ~g~sp~m~~~~~e~~~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~ 88 (249)
T TIGR00694 30 LGASPVMSEAEEEVAELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVG 88 (249)
T ss_pred cCCChhhcCCHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccc
Confidence 3665544432211 3456788999999 55433 345666677788889999999964
No 80
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=77.00 E-value=35 Score=29.78 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHHHH--HHHHHhCCCcccceeec
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLF--VSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~~i--~~~L~~~gVd~~~v~~~ 129 (209)
.+++|+.++++.+. .+.....+|..++.+...+ .++- +..++. ...++... .+.++..|+.+.++
T Consensus 55 ~~~lE~~lA~l~g~-----~~~l~~~sG~~Ai~~~l~~-ll~~GD~Vlv~---~~~y~~~~~~~~~~~~~g~~v~~~--- 122 (385)
T PRK08574 55 LRPLEEALAKLEGG-----VDALAFNSGMAAISTLFFS-LLKAGDRVVLP---MEAYGTTLRLLKSLEKFGVKVVLA--- 122 (385)
T ss_pred HHHHHHHHHHHhCC-----CcEEEeCCHHHHHHHHHHH-HhCCCCEEEEc---CCCchhHHHHHHHhhccCcEEEEE---
Confidence 56788888877652 2556678888888877665 5542 333332 23344322 22234444443211
Q ss_pred CCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhC-CccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVK-GSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 130 ~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~-~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++ +++++....-+ +.++|++...-.| .-.+.++.+.|+++|+.++.|-.
T Consensus 123 -----------~~----------------d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t 175 (385)
T PRK08574 123 -----------YP----------------STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNT 175 (385)
T ss_pred -----------CC----------------CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECC
Confidence 10 11222211112 5677777621111 11245777888899999999865
No 81
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=76.77 E-value=23 Score=30.76 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=54.5
Q ss_pred CCCeEEEEEecCChhHHHHHHHHHh-CCCcccceee--cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCC
Q 028446 94 GVPCGLIGAYGDDQQGQLFVSNMQF-SGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (209)
Q Consensus 94 G~~~~~ig~vG~D~~G~~i~~~L~~-~gVd~~~v~~--~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~ 170 (209)
+.++.++|..| ..|+.+++.|.+ ..++...+.. .+...|..+- +.+. .+..++++...+++
T Consensus 5 ~~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~------------~~~~--~l~v~~~~~~~~~~ 68 (347)
T PRK06728 5 GYHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ------------FKGR--EIIIQEAKINSFEG 68 (347)
T ss_pred CCEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee------------eCCc--ceEEEeCCHHHhcC
Confidence 34566666655 579999999995 6677543322 1112222221 1121 23333333334567
Q ss_pred ccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
.|++++.. |.+...++...+.+.|+ +++|.++
T Consensus 69 ~Divf~a~---~~~~s~~~~~~~~~~G~-~VID~Ss 100 (347)
T PRK06728 69 VDIAFFSA---GGEVSRQFVNQAVSSGA-IVIDNTS 100 (347)
T ss_pred CCEEEECC---ChHHHHHHHHHHHHCCC-EEEECch
Confidence 89988873 55677788888878885 6677765
No 82
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=74.92 E-value=31 Score=30.22 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=54.3
Q ss_pred CeEEEEEecCChhHHHHHH-HHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCccc-CchhhhCCccE
Q 028446 96 PCGLIGAYGDDQQGQLFVS-NMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE-LIAEDVKGSKW 173 (209)
Q Consensus 96 ~~~~ig~vG~D~~G~~i~~-~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~-i~~~~l~~~~~ 173 (209)
+++++|..| ..|+.+++ .|++..+....+...... ..|.+. ..+.+.. ....+ .+...++++|+
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~---------~sg~~~-~~f~g~~--~~v~~~~~~~~~~~~Di 68 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTS---------QAGGAA-PSFGGKE--GTLQDAFDIDALKKLDI 68 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecch---------hhCCcc-cccCCCc--ceEEecCChhHhcCCCE
Confidence 345555544 57999998 777777764443332110 112222 1222211 11111 11234568999
Q ss_pred EEEecccCCHHHHHHHHHHHHHCCCe-EEEeCCCC
Q 028446 174 LVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASF 207 (209)
Q Consensus 174 v~~~~~~~~~~~~~~l~~~a~~~g~~-v~~D~~~~ 207 (209)
++++. |.+...++..++.+.|++ +++|.++.
T Consensus 69 vf~a~---~~~~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 69 IITCQ---GGDYTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred EEECC---CHHHHHHHHHHHHhCCCCeEEEECChH
Confidence 98873 556778888888889985 89998764
No 83
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=74.63 E-value=21 Score=30.80 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=53.6
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCcccceee--cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCC
Q 028446 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (209)
Q Consensus 93 lG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~--~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~ 170 (209)
-..++..+|.-|- .|..+++.|.+.+.....+.. ..... |++-- +.+ ..+..++++...+.+
T Consensus 6 ~~~kVaVvGAtG~--vG~eLlrlL~~~~hP~~~l~~las~rsa----------Gk~~~--~~~--~~~~v~~~~~~~~~~ 69 (344)
T PLN02383 6 NGPSVAIVGVTGA--VGQEFLSVLTDRDFPYSSLKMLASARSA----------GKKVT--FEG--RDYTVEELTEDSFDG 69 (344)
T ss_pred CCCeEEEEcCCCh--HHHHHHHHHHhCCCCcceEEEEEccCCC----------CCeee--ecC--ceeEEEeCCHHHHcC
Confidence 4566777776664 799999999875543322211 11111 22211 112 123333444344578
Q ss_pred ccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+|++++.. |.+...++..++.+.|+ +++|.++
T Consensus 70 ~D~vf~a~---p~~~s~~~~~~~~~~g~-~VIDlS~ 101 (344)
T PLN02383 70 VDIALFSA---GGSISKKFGPIAVDKGA-VVVDNSS 101 (344)
T ss_pred CCEEEECC---CcHHHHHHHHHHHhCCC-EEEECCc
Confidence 99998873 45566777777777786 5778775
No 84
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=74.59 E-value=42 Score=29.19 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=24.7
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|+++..-.| ...+.++.+.|+++|+.+++|-.
T Consensus 130 ~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 130 PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence 35678887721111 12266778888999999999964
No 85
>PRK12412 pyridoxal kinase; Reviewed
Probab=74.16 E-value=39 Score=27.78 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=55.8
Q ss_pred EEEEecCChhH----HHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCc---hhhhC--
Q 028446 99 LIGAYGDDQQG----QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI---AEDVK-- 169 (209)
Q Consensus 99 ~ig~vG~D~~G----~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~---~~~l~-- 169 (209)
.++.-|.|+.| +.=++.++..|+..- ...+++...++.+......++. +++.+. ...++
T Consensus 4 vl~iag~D~sggaGi~aD~~t~~~lg~~~~-------~v~Ta~t~q~~~~~~~~~v~~~-----~~~~i~~q~~~l~~d~ 71 (268)
T PRK12412 4 ALTIAGSDTSGGAGIQADLKTFQELGVYGM-------TSLTTIVTMDPHNGWAHNVFPI-----PASTLKPQLETTIEGV 71 (268)
T ss_pred EEEEEeeCCCchHHHHHHHHHHHHcCCeec-------eeeeEEEeEcCCCCcEEEEEeC-----CHHHHHHHHHHHHhCC
Confidence 35666777666 233445566665432 3334555555544332222322 233332 23344
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHCCCe-EEEeCCC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~-v~~D~~~ 206 (209)
+.+++.+++.- +.+.+..+++.+++.+.+ +++||..
T Consensus 72 ~~~~ikiG~l~-~~~~v~~i~~~~~~~~~~~vv~DPv~ 108 (268)
T PRK12412 72 GVDALKTGMLG-SVEIIEMVAETIEKHNFKNVVVDPVM 108 (268)
T ss_pred CCCEEEECCCC-CHHHHHHHHHHHHhcCCCCEEECcCe
Confidence 38999999643 678888888889888876 9999964
No 86
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=74.10 E-value=27 Score=29.88 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=51.1
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCCcc---cceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCc
Q 028446 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDV---SRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (209)
Q Consensus 95 ~~~~~ig~vG~D~~G~~i~~~L~~~gVd~---~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~ 171 (209)
.++.++|.-| ..|+.+.+.|.+.+... ..+... ...+..+.+ .|. .+. ..++....+.++
T Consensus 2 ~~V~IvGAtG--~vG~~l~~lL~~~~hp~~~l~~l~s~-~~~g~~l~~---~g~-~i~----------v~d~~~~~~~~v 64 (334)
T PRK14874 2 YNVAVVGATG--AVGREMLNILEERNFPVDKLRLLASA-RSAGKELSF---KGK-ELK----------VEDLTTFDFSGV 64 (334)
T ss_pred CEEEEECCCC--HHHHHHHHHHHhCCCCcceEEEEEcc-ccCCCeeee---CCc-eeE----------EeeCCHHHHcCC
Confidence 3555666555 47999999999865443 333222 122222221 121 111 112222234578
Q ss_pred cEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 172 ~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
|+|+++. |.....+++..+.+.|+ +++|.++
T Consensus 65 DvVf~A~---g~g~s~~~~~~~~~~G~-~VIDlS~ 95 (334)
T PRK14874 65 DIALFSA---GGSVSKKYAPKAAAAGA-VVIDNSS 95 (334)
T ss_pred CEEEECC---ChHHHHHHHHHHHhCCC-EEEECCc
Confidence 9988873 44556677777777888 7888876
No 87
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=73.32 E-value=26 Score=30.14 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=49.1
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceee--cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~--~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v 174 (209)
+.++|.- ...|..+.+.|.+.+.....+.. .....+..+-+ .+. .+...+++...+.+.|++
T Consensus 2 VaIvGAt--G~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~------------~~~--~~~~~~~~~~~~~~~D~v 65 (339)
T TIGR01296 2 VAIVGAT--GAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF------------KGK--ELEVNEAKIESFEGIDIA 65 (339)
T ss_pred EEEEcCC--CHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee------------CCe--eEEEEeCChHHhcCCCEE
Confidence 3344444 45799999999886655433221 11111211111 111 122222222345789999
Q ss_pred EEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+++. +.....++++.+.+.|+ +++|.++
T Consensus 66 ~~a~---g~~~s~~~a~~~~~~G~-~VID~ss 93 (339)
T TIGR01296 66 LFSA---GGSVSKEFAPKAAKCGA-IVIDNTS 93 (339)
T ss_pred EECC---CHHHHHHHHHHHHHCCC-EEEECCH
Confidence 9873 44556677777777887 5888875
No 88
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=72.93 E-value=31 Score=29.78 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=51.0
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhCCC---cccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCc
Q 028446 95 VPCGLIGAYGDDQQGQLFVSNMQFSGV---DVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (209)
Q Consensus 95 ~~~~~ig~vG~D~~G~~i~~~L~~~gV---d~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~ 171 (209)
.++..+|..| ..|+.+++.|.+... ++..+ ..+...|..+-+ .+. .+..++++...+.+.
T Consensus 5 ~~vaIvGATG--~vG~ellrlL~~~~hP~~~l~~l-aS~~saG~~~~~------------~~~--~~~v~~~~~~~~~~~ 67 (336)
T PRK08040 5 WNIALLGATG--AVGEALLELLAERQFPVGELYAL-ASEESAGETLRF------------GGK--SVTVQDAAEFDWSQA 67 (336)
T ss_pred CEEEEEccCC--HHHHHHHHHHhcCCCCceEEEEE-EccCcCCceEEE------------CCc--ceEEEeCchhhccCC
Confidence 4555555554 579999999998432 22222 111122222221 121 222223332234678
Q ss_pred cEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 172 ~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
|++++.. |.+...+++..+.++|++ ++|.++
T Consensus 68 Dvvf~a~---p~~~s~~~~~~~~~~g~~-VIDlS~ 98 (336)
T PRK08040 68 QLAFFVA---GREASAAYAEEATNAGCL-VIDSSG 98 (336)
T ss_pred CEEEECC---CHHHHHHHHHHHHHCCCE-EEECCh
Confidence 9988874 666777888888788875 778775
No 89
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=72.79 E-value=5.9 Score=32.20 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=31.7
Q ss_pred hhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 167 ~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
.+.+.++++++..+...+.+..+++.++++++++++|+.+
T Consensus 74 ~~~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~~ 113 (254)
T cd01171 74 LLERADAVVIGPGLGRDEEAAEILEKALAKDKPLVLDADA 113 (254)
T ss_pred hhccCCEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcHH
Confidence 4568899999965523367888899999999999999864
No 90
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=71.02 E-value=5.7 Score=32.39 Aligned_cols=41 Identities=27% Similarity=0.173 Sum_probs=30.5
Q ss_pred hhhhCCccEEEEe-cccC--CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 165 AEDVKGSKWLVLR-FGMF--NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 165 ~~~l~~~~~v~~~-~~~~--~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+.++++|++++. +.+. +.+.+..+++.+++.+++|++||.
T Consensus 44 ~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~ 87 (242)
T cd01170 44 EELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPV 87 (242)
T ss_pred HHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEccc
Confidence 4567899999999 4432 134556666678899999999996
No 91
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=70.74 E-value=7.2 Score=32.21 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=31.6
Q ss_pred hhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 166 ~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
..+..++++++++.+.+.+.+.++++.+++.++++++|+..
T Consensus 88 ~~~~~~davvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa~g 128 (272)
T TIGR00196 88 ELLERYDVVVIGPGLGQDPSFKKAVEEVLELDKPVVLDADA 128 (272)
T ss_pred hhhccCCEEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEhHH
Confidence 34578899999965523344778888999999999999864
No 92
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=70.70 E-value=55 Score=28.87 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhH---HHHHHHHHhCCCcccceee
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G---~~i~~~L~~~gVd~~~v~~ 128 (209)
.+++++.++++.+. .......+|..++.+...+ .+.. +..++. +..+| ..+.+.++..|+.+..+..
T Consensus 59 ~~~le~~lA~l~g~-----~~~v~~~sG~~Ai~~al~~-l~~~Gd~Vl~~---~~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 59 TDVLEQRIAALEGG-----VAALAVASGQAAITYAILN-LAQAGDNIVSS---SYLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred HHHHHHHHHHHhCC-----CeEEEEccHHHHHHHHHHH-HhCCCCEEEEE---CCCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 45666667665542 2456667777777666554 3321 222222 23333 3344556666665433221
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+ +++++....-++.++|+++..-.| ...+.++.+.|+++|+.+++|-.
T Consensus 130 --------------~---------------d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t 180 (418)
T TIGR01326 130 --------------D---------------DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNT 180 (418)
T ss_pred --------------C---------------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 0 122222111134667777621112 11245677778888888888853
No 93
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=70.68 E-value=6.2 Score=32.62 Aligned_cols=54 Identities=22% Similarity=0.134 Sum_probs=34.3
Q ss_pred CcCCCCCcccCc-hhhhCCccEEEEe-cccCCH--HHHHHHHHHHHHCCCeEEEeCCC
Q 028446 153 SNAVKIQADELI-AEDVKGSKWLVLR-FGMFNF--EVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 153 ga~~~l~~~~i~-~~~l~~~~~v~~~-~~~~~~--~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
|+.+-+..+.-. .+.++.++.+++. +.+.+. +.+..+++.+++.++++++||..
T Consensus 36 g~sp~m~~~~~e~~~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~ 93 (263)
T PRK09355 36 GASPAMAHAPEEAEEMAKIAGALVINIGTLTEERIEAMLAAGKIANEAGKPVVLDPVG 93 (263)
T ss_pred CCCcccCCCHHHHHHHHHhcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEECCcc
Confidence 555444332211 3456788999999 554332 33555666788899999999964
No 94
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=70.21 E-value=84 Score=28.36 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=22.7
Q ss_pred CceEecCChHHHHHHHHHhhcCCCeEE
Q 028446 73 PIKTIAGGSVTNTIRGLSVGFGVPCGL 99 (209)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~rlG~~~~~ 99 (209)
....+.||.+..+|..++ ++|.++.+
T Consensus 85 ~~~~rmGGnAgimAn~la-~lg~~~Vi 110 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLS-ELGASRVV 110 (453)
T ss_pred CceEEeCChHHHHHHHHH-hcCCceEE
Confidence 557999999999999999 89998544
No 95
>PLN02242 methionine gamma-lyase
Probab=69.94 E-value=44 Score=29.55 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=22.9
Q ss_pred ccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeC
Q 028446 171 SKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 171 ~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.++|++...-.| ...+.++.+.|+++|+.++.|-
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDe 200 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDN 200 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEEC
Confidence 677887721112 2235677788888999999884
No 96
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=69.91 E-value=46 Score=29.15 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=23.5
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|+++..-.| .-.+.++.+.|+++|+.+++|-.
T Consensus 149 ~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a 188 (398)
T PRK07504 149 PNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNV 188 (398)
T ss_pred cCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECC
Confidence 46778887721111 11256677778888999988864
No 97
>PRK06234 methionine gamma-lyase; Provisional
Probab=69.78 E-value=60 Score=28.43 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHH---HHHHHHHhCCCcccce
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQ---LFVSNMQFSGVDVSRL 126 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~---~i~~~L~~~gVd~~~v 126 (209)
..++++.++++.+. .......+|.+++.+...+ .+.- +..++.. ..++. .+...++..|+...++
T Consensus 66 ~~~Le~~iA~~~g~-----~~~l~~~sG~~Ai~~al~~-ll~~Gd~Vl~~~---~~y~~~~~~~~~~~~~~G~~v~~v 134 (400)
T PRK06234 66 STEVENKLALLEGG-----EAAVVAASGMGAISSSLWS-ALKAGDHVVASD---TLYGCTFALLNHGLTRYGVEVTFV 134 (400)
T ss_pred HHHHHHHHHHHhCC-----CcEEEEcCHHHHHHHHHHH-HhCCCCEEEEec---CccchHHHHHHHHHhhCCeEEEEE
Confidence 46677777776542 2456677777777665554 4432 2222222 22332 2334456666655443
No 98
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=68.88 E-value=13 Score=32.87 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=36.6
Q ss_pred CCCCcccCchhhhCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEe
Q 028446 156 VKIQADELIAEDVKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMD 203 (209)
Q Consensus 156 ~~l~~~~i~~~~l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D 203 (209)
..+++++++...-++.+++.+. ..- .+++...++++.|+++|+.|+.|
T Consensus 158 ~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisD 211 (420)
T KOG0257|consen 158 WTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISD 211 (420)
T ss_pred ccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEh
Confidence 4566666655556789999998 321 25788999999999999999887
No 99
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=68.38 E-value=28 Score=29.89 Aligned_cols=89 Identities=6% Similarity=-0.034 Sum_probs=52.4
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~ 176 (209)
+.+ |..| ..|+.+++.|++.+.....+..-... + ...| +. +.+.| ..+..+++....+++.|++++
T Consensus 6 iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~------~-~s~g-k~-i~f~g--~~~~V~~l~~~~f~~vDia~f 71 (322)
T PRK06901 6 IAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIE------P-FGEE-QG-IRFNN--KAVEQIAPEEVEWADFNYVFF 71 (322)
T ss_pred EEE-ecCc--HHHHHHHHHHHhcCCchhheeecccc------c-ccCC-CE-EEECC--EEEEEEECCccCcccCCEEEE
Confidence 444 5444 58999999999998877654432211 0 1122 11 12222 133344444445678999888
Q ss_pred ecccCCHHHHHHHHHHHHHCCCeEEEe
Q 028446 177 RFGMFNFEVIQAAIRIAKQEGLSVSMD 203 (209)
Q Consensus 177 ~~~~~~~~~~~~l~~~a~~~g~~v~~D 203 (209)
. +.+...++...+.++|+.|+=+
T Consensus 72 -a---g~~~s~~~ap~a~~aG~~VIDn 94 (322)
T PRK06901 72 -A---GKMAQAEHLAQAAEAGCIVIDL 94 (322)
T ss_pred -c---CHHHHHHHHHHHHHCCCEEEEC
Confidence 3 4456777888888898766533
No 100
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=68.35 E-value=34 Score=29.88 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=53.4
Q ss_pred CeEEEEEecCChhHHHHHHHHH-hCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCch-hhhCCccE
Q 028446 96 PCGLIGAYGDDQQGQLFVSNMQ-FSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-EDVKGSKW 173 (209)
Q Consensus 96 ~~~~ig~vG~D~~G~~i~~~L~-~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~-~~l~~~~~ 173 (209)
+++++|+.| ..|+.+++.|. +.......+..-.. ...+.+.. .+.+. .+...++.. ..+++.|+
T Consensus 2 ~VavvGATG--~VG~~ll~~L~~e~~fp~~~~~~~ss---------~~s~g~~~-~f~~~--~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 2 NVGLVGWRG--MVGSVLMQRMQEERDFDAIRPVFFST---------SQLGQAAP-SFGGT--TGTLQDAFDIDALKALDI 67 (366)
T ss_pred eEEEEcCcC--HHHHHHHHHHHhCCCCccccEEEEEc---------hhhCCCcC-CCCCC--cceEEcCcccccccCCCE
Confidence 345555555 58999999888 55555332222110 01111211 11121 122222322 24578899
Q ss_pred EEEecccCCHHHHHHHHHHHHHCCCe-EEEeCCCC
Q 028446 174 LVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASF 207 (209)
Q Consensus 174 v~~~~~~~~~~~~~~l~~~a~~~g~~-v~~D~~~~ 207 (209)
++++. +.+...++...+.++|.+ +++|-++.
T Consensus 68 vffa~---g~~~s~~~~p~~~~aG~~~~VIDnSSa 99 (366)
T TIGR01745 68 IITCQ---GGDYTNEIYPKLRESGWQGYWIDAASS 99 (366)
T ss_pred EEEcC---CHHHHHHHHHHHHhCCCCeEEEECChh
Confidence 99873 446677888889999974 78887764
No 101
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=68.17 E-value=48 Score=28.92 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=24.8
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|+++....| ...+.++.+.|+++|+.++.|-.
T Consensus 145 ~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a 184 (388)
T PRK07811 145 PRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNT 184 (388)
T ss_pred cCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECC
Confidence 35778887621112 23466778888899999999953
No 102
>PRK06767 methionine gamma-lyase; Provisional
Probab=66.91 E-value=58 Score=28.32 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=21.6
Q ss_pred CccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.++|+++....| .-...++.+.|+++|+.+++|-.
T Consensus 146 ~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a 184 (386)
T PRK06767 146 NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNT 184 (386)
T ss_pred CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECC
Confidence 5677777621111 11245667777888888888854
No 103
>PRK07503 methionine gamma-lyase; Provisional
Probab=66.35 E-value=72 Score=27.98 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+.++|++.....| ...+.++.+.|+++|+.++.|-.
T Consensus 149 ~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a 188 (403)
T PRK07503 149 DKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNT 188 (403)
T ss_pred ccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 35778887511111 12256777888899999999864
No 104
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=66.29 E-value=80 Score=27.68 Aligned_cols=116 Identities=21% Similarity=0.110 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCC-CeEEEEEecCChhHHHHH---HHHHhCCCccccee
Q 028446 52 AIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFV---SNMQFSGVDVSRLR 127 (209)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~-~~~~ig~vG~D~~G~~i~---~~L~~~gVd~~~v~ 127 (209)
+.+.+++.++.+.+. .......||..++.+...+ .++- +..++. ++.++..+. ..+++.|+.+.+
T Consensus 54 t~~~Le~~lA~leg~-----e~ivvt~gg~~Ai~~~l~a-ll~~Gd~Il~~---~~~y~~~~~~~~~~~~~~gi~v~~-- 122 (388)
T PRK08861 54 NRGLLEQTLSELESG-----KGAVVTNCGTSALNLWVSA-LLGPDDLIVAP---HDCYGGTYRLFNTRANKGDFKVQF-- 122 (388)
T ss_pred hHHHHHHHHHHHhCC-----CeEEEECCHHHHHHHHHHH-HcCCCCEEEEc---CCchHHHHHHHHHHHhcCCeEEEE--
Confidence 457788888887652 4677888888888777766 4532 222222 344553322 222333333222
Q ss_pred ecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeC
Q 028446 128 MKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 128 ~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
++. .+.+++....-++.++|+++..-.| .-...++.+.|+++|+.+++|-
T Consensus 123 ------------vd~---------------~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDe 175 (388)
T PRK08861 123 ------------VDQ---------------SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDN 175 (388)
T ss_pred ------------ECC---------------CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEEC
Confidence 210 1223332211246778888611112 1113466777888899999886
Q ss_pred C
Q 028446 205 A 205 (209)
Q Consensus 205 ~ 205 (209)
.
T Consensus 176 a 176 (388)
T PRK08861 176 T 176 (388)
T ss_pred C
Confidence 4
No 105
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=65.04 E-value=90 Score=27.67 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=24.4
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+.++|++...-.| .-.+.++.+.|+++|+.+++|-.
T Consensus 147 ~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a 186 (427)
T PRK05994 147 PRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNT 186 (427)
T ss_pred cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 35778888621111 11256778888999999999965
No 106
>PRK07324 transaminase; Validated
Probab=64.79 E-value=74 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=26.4
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+.+++++. ..- .+.+...++++.|+++|+.++.|-
T Consensus 152 ~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 152 PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 467788876 211 145667888899999999999984
No 107
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=64.40 E-value=1.1e+02 Score=27.66 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=50.5
Q ss_pred CCceEEEecCceeEEEEeecChhHHHh----------------CCC------------------CCCCceecCHHHHHHH
Q 028446 14 QAALILGLQPAALIDHVARVDWSLLDQ----------------IPG------------------ERGGSIPVAIEELEHI 59 (209)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~----------------~p~------------------~~g~~~~~~~~~~~~i 59 (209)
+...|++-= |+++|-+.+++.+.+++ +|. -.+.+..+..++..+.
T Consensus 11 ~~~~~~~aY-N~NiDai~~l~~~~l~~li~~~~~~~v~~~~e~~p~~I~s~~Dl~~~l~~~mk~G~aaE~~v~n~~l~~~ 89 (463)
T PRK03979 11 SNVSIFTAY-NSNVDAIKYLNDEDIQKLIEEFNEEEIIERIEEYPREINEPLDFVARLIHAMKTGKPAEVPLKNEELHEW 89 (463)
T ss_pred ccCceEEEe-ecchhheeecCHHHHHHHHHHhChHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCceEeeecCHHHHHH
Confidence 355677765 99999888875533321 332 1223334443444555
Q ss_pred HHH-hhhccCCCCCCceEecCChHHHHHHHHHhhcCCCe--EEEEEecC
Q 028446 60 LSE-VKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC--GLIGAYGD 105 (209)
Q Consensus 60 ~~~-~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~--~~ig~vG~ 105 (209)
++. + .....+.||.+.-+|..+| ++|.+. .++..++.
T Consensus 90 ~~~~~--------~~~~~rmGGqAgimAn~la-~lg~~~vV~~~p~lsk 129 (463)
T PRK03979 90 FDEHL--------KYDEERMGGQAGIISNLLA-ILDLKKVIAYTPWLSK 129 (463)
T ss_pred HHHhc--------ccceEEeCChHHHHHHHHH-hcCCceEEEeCCCCCH
Confidence 543 1 2345789999999999999 899883 55555554
No 108
>PRK08818 prephenate dehydrogenase; Provisional
Probab=62.71 E-value=75 Score=27.79 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=49.2
Q ss_pred EEEEecC-ChhHHHHHHHHHhC-CCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEE
Q 028446 99 LIGAYGD-DQQGQLFVSNMQFS-GVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (209)
Q Consensus 99 ~ig~vG~-D~~G~~i~~~L~~~-gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~ 176 (209)
-|+.||- ...|.++...|++. +..+ . -.|+. ..+ ..+ ..+.++++|+|++
T Consensus 6 ~I~IIGl~GliGgslA~alk~~~~~~V---~-----------g~D~~-------d~~---~~~----~~~~v~~aDlVil 57 (370)
T PRK08818 6 VVGIVGSAGAYGRWLARFLRTRMQLEV---I-----------GHDPA-------DPG---SLD----PATLLQRADVLIF 57 (370)
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCCEE---E-----------EEcCC-------ccc---cCC----HHHHhcCCCEEEE
Confidence 3567777 88999999999975 2221 1 11111 000 001 1345789999999
Q ss_pred ecccCCHHHHHHHHHHHHH-----CCCeEEEeCCCCC
Q 028446 177 RFGMFNFEVIQAAIRIAKQ-----EGLSVSMDLASFE 208 (209)
Q Consensus 177 ~~~~~~~~~~~~l~~~a~~-----~g~~v~~D~~~~~ 208 (209)
+. |...+.++++...+ ..-.++.|.++.|
T Consensus 58 av---Pv~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK 91 (370)
T PRK08818 58 SA---PIRHTAALIEEYVALAGGRAAGQLWLDVTSIK 91 (370)
T ss_pred eC---CHHHHHHHHHHHhhhhcCCCCCeEEEECCCCc
Confidence 84 66677777766543 2346899999876
No 109
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=61.27 E-value=17 Score=29.01 Aligned_cols=32 Identities=9% Similarity=0.254 Sum_probs=26.7
Q ss_pred ccEEEEecccCCHHHHHHHHHHHHHCCCeEEEe
Q 028446 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD 203 (209)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D 203 (209)
.-++++++++ |.+...++++.+++.|+++++-
T Consensus 91 g~~vFVSfSM-P~~sLk~Ll~qa~~~G~p~VlR 122 (212)
T PRK13730 91 GALYFVSFSI-PEEGLKRMLGETRHYGIPATLR 122 (212)
T ss_pred ceEEEEEcCC-CHHHHHHHHHHHHHhCCcEEEe
Confidence 3456666777 9999999999999999999885
No 110
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=60.57 E-value=93 Score=27.77 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=24.5
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+.++|++.....| ..-+.++.+.|+++|+.+++|-.
T Consensus 154 ~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t 193 (436)
T PRK07812 154 PNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNT 193 (436)
T ss_pred CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 35677877621111 12256778888999999999974
No 111
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=59.63 E-value=52 Score=24.69 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=55.9
Q ss_pred Eec-CChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEeccc
Q 028446 102 AYG-DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM 180 (209)
Q Consensus 102 ~vG-~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~ 180 (209)
.+| +...|+.+.+.|.+.|.++..+.+.+.+... ...-+++. +. ..+++.+ .+.++++|.|+....-
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-------~~~~~~~~--~d--~~d~~~~-~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-------SPGVEIIQ--GD--LFDPDSV-KAALKGADAVIHAAGP 70 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-------CTTEEEEE--SC--TTCHHHH-HHHHTTSSEEEECCHS
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-------ccccccce--ee--ehhhhhh-hhhhhhcchhhhhhhh
Confidence 455 4689999999999999777655554332221 12223322 11 1223333 3467899999998321
Q ss_pred --CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 181 --FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 181 --~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
...+.+..+++.+++.|++-++=.++
T Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 71 PPKDVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp TTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred hcccccccccccccccccccccceeeec
Confidence 11456778888888888865554443
No 112
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=59.15 E-value=15 Score=29.99 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=25.0
Q ss_pred EEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 173 ~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.-++..+...+..+++++.|+++|++|++|..
T Consensus 41 ~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 41 YYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp EEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eeccccccchhhhhhhhhhccccccceEEEeee
Confidence 333443333567789999999999999999974
No 113
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=58.33 E-value=24 Score=30.38 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=61.3
Q ss_pred CChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCc-ccceeecCC-CceeEEEEEcCCCCeeEEecCC-cC
Q 028446 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD-VSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS-NA 155 (209)
Q Consensus 79 GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd-~~~v~~~~~-~T~~~~i~~~~~G~rt~~~~~g-a~ 155 (209)
|+...-.-..++..+|.+-.+...=|. ..+.-.|+..|+. -+.|.+..- ..++.-.+.. .|-+.++..-. ..
T Consensus 24 g~~~~~fE~~~a~~~g~~~~~~~~sgt----~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~-~G~~pv~~Di~~~~ 98 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVKYAVAVSSGT----SALHLALRALGLGPGDEVIVPAYTFPATASAILW-AGAEPVFVDIDPET 98 (363)
T ss_dssp SHHHHHHHHHHHHHHTSSEEEEESSHH----HHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHH-TT-EEEEE-BETTT
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCChh----HHHHHHHHhcCCCcCceEecCCCcchHHHHHHHH-hccEEEEEeccCCc
Confidence 444444444555456866555444443 3455556666665 233444331 1111111222 34444443322 33
Q ss_pred CCCCcccCchhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 156 VKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 156 ~~l~~~~i~~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
..++++++....-++.+.|++...+.....+.++.+.|+++|++|+-|..-
T Consensus 99 ~~id~~~~~~~i~~~t~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~ 149 (363)
T PF01041_consen 99 LNIDPEALEKAITPKTKAILVVHLFGNPADMDAIRAIARKHGIPLIEDAAQ 149 (363)
T ss_dssp SSB-HHHHHHHHHTTEEEEEEE-GGGB---HHHHHHHHHHTT-EEEEE-TT
T ss_pred CCcCHHHHHHHhccCccEEEEecCCCCcccHHHHHHHHHHcCCcEEEcccc
Confidence 456777765544467788777722222234677888899999999999753
No 114
>PLN02509 cystathionine beta-lyase
Probab=58.17 E-value=1.4e+02 Score=26.88 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=25.7
Q ss_pred CccEEEEec--cc-CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRF--GM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~--~~-~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.++|+++. +. .....+.++.+.|+++|+.+++|-.
T Consensus 217 ~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A 255 (464)
T PLN02509 217 QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNS 255 (464)
T ss_pred CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 567888772 21 1234567888889999999999964
No 115
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=56.45 E-value=1.4e+02 Score=26.22 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhH---HHHHHHHHhCCCcccceee
Q 028446 52 AIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G---~~i~~~L~~~gVd~~~v~~ 128 (209)
..+.+|+.++.|.+. ......+.|.++-.+..++ .+...-.++ +.++-+| +.+.+.+.+.||++.++
T Consensus 56 t~~~le~~la~Le~g-----~~a~~~~SGmaAi~~~l~~-ll~~Gd~iv--~~~~~Y~~t~~~~~~~l~~~gv~v~~~-- 125 (386)
T PF01053_consen 56 TVRALEQRLAALEGG-----EDALLFSSGMAAISAALLA-LLKPGDHIV--ASDDLYGGTYRLLEELLPRFGVEVTFV-- 125 (386)
T ss_dssp HHHHHHHHHHHHHT------SEEEEESSHHHHHHHHHHH-HS-TTBEEE--EESSSSHHHHHHHHHCHHHTTSEEEEE--
T ss_pred cHHHHHHHHHHhhcc-----cceeeccchHHHHHHHHHh-hcccCCceE--ecCCccCcchhhhhhhhcccCcEEEEe--
Confidence 357788888888762 2456677887777666666 553221221 1234455 33455566777765432
Q ss_pred cCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCC-CeEEEeC
Q 028446 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEG-LSVSMDL 204 (209)
Q Consensus 129 ~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g-~~v~~D~ 204 (209)
|. -+.+++....-++.++|++...-.| .--+.++.+.|+++| +++++|-
T Consensus 126 ------------d~---------------~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDn 178 (386)
T PF01053_consen 126 ------------DP---------------TDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDN 178 (386)
T ss_dssp ------------ST---------------TSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEEC
T ss_pred ------------Cc---------------hhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeec
Confidence 11 1112232212236777887721112 233667888889998 9999985
Q ss_pred C
Q 028446 205 A 205 (209)
Q Consensus 205 ~ 205 (209)
.
T Consensus 179 T 179 (386)
T PF01053_consen 179 T 179 (386)
T ss_dssp T
T ss_pred c
Confidence 4
No 116
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=54.01 E-value=25 Score=28.58 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=28.8
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHCCC-eEEEeCCC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~g~-~v~~D~~~ 206 (209)
+.+.+.+++.. +.+.+..+++.+++.+. +|++||..
T Consensus 67 ~~~aikiG~l~-~~~~~~~i~~~~~~~~~~~vVlDPv~ 103 (254)
T TIGR00097 67 PVDAAKTGMLA-SAEIVEAVARKLREYPVRPLVVDPVM 103 (254)
T ss_pred CCCEEEECCcC-CHHHHHHHHHHHHhcCCCcEEECCcc
Confidence 56888888543 67888889999999998 69999863
No 117
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=53.21 E-value=1.5e+02 Score=25.71 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=22.9
Q ss_pred CccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.++|++...-.| ...+.++.+.|+++|+.++.|-.
T Consensus 134 ~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t 172 (380)
T PRK06176 134 NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNT 172 (380)
T ss_pred CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECC
Confidence 5677777511111 12255777888899999999953
No 118
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=51.61 E-value=27 Score=27.96 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=28.8
Q ss_pred CccEEEEe-ccc-CCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 170 GSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 170 ~~~~v~~~-~~~-~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+..-|.++ +.- .-.+.+.++++.+|+.|+.+++|.|.+
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~ 77 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGD 77 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 34577777 321 125778899999999999999999864
No 119
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=51.18 E-value=1.7e+02 Score=25.69 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=23.3
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+.++|+++..-.| ...+.++.+.|+++|+.++.|-.
T Consensus 144 ~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a 183 (405)
T PRK08776 144 QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNT 183 (405)
T ss_pred cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECC
Confidence 35677777621112 22356777788888888888854
No 120
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=50.90 E-value=1e+02 Score=26.33 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=26.2
Q ss_pred hhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 167 ~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
.+.++|++++.. |.+...+++..+.+.|++ ++|.++
T Consensus 47 ~~~~~DvvFlal---p~~~s~~~~~~~~~~g~~-VIDlSa 82 (313)
T PRK11863 47 LLNAADVAILCL---PDDAAREAVALIDNPATR-VIDAST 82 (313)
T ss_pred hhcCCCEEEECC---CHHHHHHHHHHHHhCCCE-EEECCh
Confidence 446788888873 666777788877777774 778775
No 121
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=50.44 E-value=1.9e+02 Score=26.04 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=27.5
Q ss_pred eEecCChHHHHHHHHHhhcCCCe--EEEEEecCChhHHHHHHHHHhC
Q 028446 75 KTIAGGSVTNTIRGLSVGFGVPC--GLIGAYGDDQQGQLFVSNMQFS 119 (209)
Q Consensus 75 ~~~~GG~~~N~a~~la~rlG~~~--~~ig~vG~D~~G~~i~~~L~~~ 119 (209)
....||.+.-+|..++ ++|.++ .+.+.++ +..++.|.+.
T Consensus 85 ~~rmGGqAgimAn~la-~lg~~~vI~~~~~ls-----~~qa~lf~~~ 125 (446)
T TIGR02045 85 YERMGGQAGIISNLLG-RLGLKKVIAYTPFLS-----KRQAEMFVAT 125 (446)
T ss_pred eeeeCCHHHHHHHHHH-hcCCceEEEeCCCCC-----HHHHHHhCCc
Confidence 4689999999999999 899884 3444444 3344555443
No 122
>smart00642 Aamy Alpha-amylase domain.
Probab=50.24 E-value=20 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
..+..+++++.|+++|+.|++|...
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4567899999999999999999854
No 123
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=49.29 E-value=34 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=28.2
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHC-CCeEEEeCCC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~-g~~v~~D~~~ 206 (209)
+.+.+.+++.- +.+.+..+.+.+++. ++++++||..
T Consensus 68 ~~~~i~~G~l~-~~~~~~~i~~~~~~~~~~~vv~Dpv~ 104 (242)
T cd01169 68 PVDAIKIGMLG-SAEIIEAVAEALKDYPDIPVVLDPVM 104 (242)
T ss_pred CCCEEEECCCC-CHHHHHHHHHHHHhCCCCcEEECCce
Confidence 67889888532 567777888888876 8999999964
No 124
>PLN00175 aminotransferase family protein; Provisional
Probab=48.70 E-value=1.9e+02 Score=25.36 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCcccCchhhhCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 158 IQADELIAEDVKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
++++++....-.+.+++++. ..- .+.+...++++.|+++++.++.|-
T Consensus 175 ~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De 227 (413)
T PLN00175 175 VPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDE 227 (413)
T ss_pred CCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEec
Confidence 34444432222356777775 211 245667788888888898888875
No 125
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=48.43 E-value=28 Score=28.12 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=27.2
Q ss_pred CCccEEEEecccC--CHHHHHHHHHHHHHC--CCeEEEeCC
Q 028446 169 KGSKWLVLRFGMF--NFEVIQAAIRIAKQE--GLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~--~~~~~~~l~~~a~~~--g~~v~~D~~ 205 (209)
.+.+.+.+++.-. ..+.+.++++.++++ |++|++||+
T Consensus 71 ~~~~~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv 111 (254)
T cd01173 71 LEYDAVLTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPV 111 (254)
T ss_pred ccCCEEEEecCCCHHHHHHHHHHHHHHHHhCCCceEEECCC
Confidence 4678887665321 256778888888877 999999995
No 126
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=48.04 E-value=39 Score=27.90 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=34.9
Q ss_pred CchhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 163 LIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 163 i~~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+......++|+|++.....+.+.+.++++.+++.|..+.+|..+.
T Consensus 126 i~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 126 IYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 434455689999999433366788999999999999999998653
No 127
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=47.93 E-value=35 Score=22.20 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecC------ChhHHHHHHHHHhCCCcccc
Q 028446 82 VTNTIRGLSVGFGVPCGLIGAYGD------DQQGQLFVSNMQFSGVDVSR 125 (209)
Q Consensus 82 ~~N~a~~la~rlG~~~~~ig~vG~------D~~G~~i~~~L~~~gVd~~~ 125 (209)
+.=.|..++ ++|.++.++..-.. ....+.+.+.|++.||+...
T Consensus 11 g~E~A~~l~-~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 11 GIELAEALA-ELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHH-HTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHH-HhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 456777887 89999998876432 24678888999999988753
No 128
>PRK07105 pyridoxamine kinase; Validated
Probab=47.58 E-value=31 Score=28.56 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=25.1
Q ss_pred CccEEEEecccCCHH---HHHHHHHHHHHCCCeEEEeCCC
Q 028446 170 GSKWLVLRFGMFNFE---VIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~---~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+.+.|++++.- +.+ .+.++++.+++.++++++||+.
T Consensus 75 ~~~aik~G~l~-~~~~~~~v~~~~~~~~~~~~~vv~DPv~ 113 (284)
T PRK07105 75 KFDAIYSGYLG-SPRQIQIVSDFIKYFKKKDLLVVVDPVM 113 (284)
T ss_pred ccCEEEECcCC-CHHHHHHHHHHHHHhccCCCeEEECCcc
Confidence 68899988643 443 3444555556678999999974
No 129
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=46.88 E-value=2e+02 Score=25.50 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcC--CCeEEEEEecCChhH---HHHHHHHHhCCCcccce
Q 028446 52 AIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG--VPCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRL 126 (209)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG--~~~~~ig~vG~D~~G---~~i~~~L~~~gVd~~~v 126 (209)
..+.+|+.+++|.+. ......+.|.++-++..++ .+. -.+.. .+|-|| +.+...|++.||++.++
T Consensus 64 T~~~lE~~~a~LEg~-----~~~~afsSGmaAI~~~~l~-ll~~GD~vl~----~~~~YG~t~~~~~~~l~~~gi~~~~~ 133 (396)
T COG0626 64 TRDALEEALAELEGG-----EDAFAFSSGMAAISTALLA-LLKAGDHVLL----PDDLYGGTYRLFEKILQKFGVEVTFV 133 (396)
T ss_pred cHHHHHHHHHHhhCC-----CcEEEecCcHHHHHHHHHH-hcCCCCEEEe----cCCccchHHHHHHHHHHhcCeEEEEE
Confidence 467788888888753 3677888888888887776 553 33322 233455 55667778888887755
Q ss_pred e
Q 028446 127 R 127 (209)
Q Consensus 127 ~ 127 (209)
-
T Consensus 134 d 134 (396)
T COG0626 134 D 134 (396)
T ss_pred C
Confidence 4
No 130
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=46.77 E-value=1.6e+02 Score=24.72 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEeC
Q 028446 183 FEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 183 ~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+...++++.|+++|+.+++|-
T Consensus 144 ~~~~~~l~~~a~~~~~~ii~De 165 (330)
T TIGR01140 144 PETLLALAARLRARGGWLVVDE 165 (330)
T ss_pred HHHHHHHHHHhHhcCCEEEEEC
Confidence 4556666666777777777764
No 131
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=46.21 E-value=91 Score=27.37 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=51.8
Q ss_pred CCeEEEEEecCChhHHHHHHHHHhC-CCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccE
Q 028446 95 VPCGLIGAYGDDQQGQLFVSNMQFS-GVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (209)
Q Consensus 95 ~~~~~ig~vG~D~~G~~i~~~L~~~-gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~ 173 (209)
.++.++|..|- .|..+++.|.++ .+++..+... ...+..+-... ..+.. + ...+.++++...++++|+
T Consensus 39 ~kVaIvGATG~--vG~eLlrlL~~hP~~el~~l~s~-~saG~~i~~~~----~~l~~--~--~~~~~~~~~~~~~~~~Dv 107 (381)
T PLN02968 39 KRIFVLGASGY--TGAEVRRLLANHPDFEITVMTAD-RKAGQSFGSVF----PHLIT--Q--DLPNLVAVKDADFSDVDA 107 (381)
T ss_pred cEEEEECCCCh--HHHHHHHHHHhCCCCeEEEEECh-hhcCCCchhhC----ccccC--c--cccceecCCHHHhcCCCE
Confidence 46777776664 799999999888 4444433321 11221111000 11110 1 112223344334578999
Q ss_pred EEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 174 v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
|++.. |.+...+++..+ +.| ..++|.++
T Consensus 108 Vf~Al---p~~~s~~i~~~~-~~g-~~VIDlSs 135 (381)
T PLN02968 108 VFCCL---PHGTTQEIIKAL-PKD-LKIVDLSA 135 (381)
T ss_pred EEEcC---CHHHHHHHHHHH-hCC-CEEEEcCc
Confidence 99973 556677777776 456 45777765
No 132
>PRK07671 cystathionine beta-lyase; Provisional
Probab=45.55 E-value=2e+02 Score=24.89 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=23.0
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|+++..-.| ...+.++.+.|+++|+.+++|-.
T Consensus 133 ~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a 172 (377)
T PRK07671 133 PNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNT 172 (377)
T ss_pred CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 35677777621112 22356677778888888888853
No 133
>PRK10785 maltodextrin glucosidase; Provisional
Probab=45.40 E-value=27 Score=32.53 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 183 FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 183 ~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+...++++.|+++|++|++|..
T Consensus 225 ~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 225 DAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 46789999999999999999974
No 134
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=45.36 E-value=1.8e+02 Score=25.72 Aligned_cols=37 Identities=19% Similarity=0.059 Sum_probs=24.6
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|++...-.| .-.+.++.+.|+++|+.++.|-.
T Consensus 142 ~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a 181 (425)
T PRK06084 142 ERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNT 181 (425)
T ss_pred cCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 46788888721112 11256778888999999999964
No 135
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.54 E-value=1e+02 Score=26.97 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=54.7
Q ss_pred ecCChhHHHHHHHHHhC-CCcccceeecCC-Ccee--E---EE-EEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEE
Q 028446 103 YGDDQQGQLFVSNMQFS-GVDVSRLRMKRG-PTGQ--C---VC-LVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (209)
Q Consensus 103 vG~D~~G~~i~~~L~~~-gVd~~~v~~~~~-~T~~--~---~i-~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v 174 (209)
.|-|..++...+.|.+. |+++..+.-.++ --|. . +- .+|+.-.-.++.-.|.....+ .+.+++.|+|
T Consensus 8 tgv~~~~~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~~v~~~~D~~tglpVySLYG~~~~Pt-----~~mL~~vDvl 82 (365)
T PF07075_consen 8 TGVDSDGRHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGEKVEDYIDPRTGLPVYSLYGKTRKPT-----PEMLKGVDVL 82 (365)
T ss_pred cccCCCCcCHHHHHhhCCCCCEEEEecCCCCCccchhcCCcCCCCcCCCCCCeEEECCCCCCCCC-----HHHHhCCCEE
Confidence 34455678888999888 898877765542 1111 1 00 112211112333334432222 3467799999
Q ss_pred EEe-cccCC-----HHHHHHHHHHHHHCCCeE-EEe
Q 028446 175 VLR-FGMFN-----FEVIQAAIRIAKQEGLSV-SMD 203 (209)
Q Consensus 175 ~~~-~~~~~-----~~~~~~l~~~a~~~g~~v-~~D 203 (209)
+++ -.+.. -..+..+++.|.++|+++ ++|
T Consensus 83 vfDiQDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLD 118 (365)
T PF07075_consen 83 VFDIQDVGVRFYTYISTLYYVMEAAAENGKPVVVLD 118 (365)
T ss_pred EEeCccCCchHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 999 33311 356778889999999865 455
No 136
>PLN02721 threonine aldolase
Probab=43.74 E-value=1.9e+02 Score=24.11 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.1
Q ss_pred CccEEEEec--cc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 170 GSKWLVLRF--GM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 170 ~~~~v~~~~--~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
++++|+++. +. .+.+...++.+.|+++|+.+++|-
T Consensus 137 ~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~ 178 (353)
T PLN02721 137 TTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDG 178 (353)
T ss_pred cceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEc
Confidence 677888852 11 134557889999999999999995
No 137
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=43.57 E-value=1.5e+02 Score=25.47 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=24.8
Q ss_pred hhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 167 ~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
.+.++|+|.+.. |......+...+.+.|++| +|.++
T Consensus 70 ~~~~~DvVf~a~---p~~~s~~~~~~~~~~G~~V-IDlsg 105 (341)
T TIGR00978 70 ASKDVDIVFSAL---PSEVAEEVEPKLAEAGKPV-FSNAS 105 (341)
T ss_pred HhccCCEEEEeC---CHHHHHHHHHHHHHCCCEE-EECCh
Confidence 446789888873 5555666777777888875 55553
No 138
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=43.46 E-value=51 Score=22.26 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcc
Q 028446 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDV 123 (209)
Q Consensus 79 GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~ 123 (209)
+|.+...+..+. ..|.++.+.+.+|.. .++.|++.||..
T Consensus 47 ~~~~~~~~~~l~-~~~v~~vi~~~iG~~-----a~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLA-LEGCDAVLVGGIGGP-----AAAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHH-HCCCcEEEEcccCcc-----HHHHHHHcCCEE
Confidence 355678888887 789999999998876 556788889886
No 139
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=43.21 E-value=68 Score=26.49 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=30.6
Q ss_pred CccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 170 GSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 170 ~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
..+-|.+++.= | .+.+.++++.||+.|+.+++|.|.+
T Consensus 83 ~~~gvt~SGGE-P~~q~e~~~~~~~~ake~Gl~~~l~TnG~ 122 (260)
T COG1180 83 SGGGVTFSGGE-PTLQAEFALDLLRAAKERGLHVALDTNGF 122 (260)
T ss_pred CCCEEEEECCc-chhhHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 67888888432 3 5788999999999999999999865
No 140
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=42.72 E-value=63 Score=26.06 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=31.8
Q ss_pred CCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
..+||+.+.+.- +.+++..+++.|++.|+.+.+|+-.
T Consensus 79 aGAd~~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~ 115 (217)
T COG0269 79 AGADWVTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIG 115 (217)
T ss_pred cCCCEEEEEecC-CHHHHHHHHHHHHHcCCeEEEEeec
Confidence 589999998643 7889999999999999999999754
No 141
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=42.40 E-value=86 Score=19.71 Aligned_cols=45 Identities=7% Similarity=0.021 Sum_probs=29.4
Q ss_pred eEEEEEecCCh----hHHHHHHHHHhCCCcccceeecCCCceeEEEEEc
Q 028446 97 CGLIGAYGDDQ----QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141 (209)
Q Consensus 97 ~~~ig~vG~D~----~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~ 141 (209)
...++.+|++- ....+.+.|.+.||+...+.........++++-+
T Consensus 2 ~a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~ 50 (66)
T cd04915 2 VAIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDR 50 (66)
T ss_pred EEEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEH
Confidence 56788888643 3456778889999998666554434555555443
No 142
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=42.16 E-value=2.3e+02 Score=25.19 Aligned_cols=48 Identities=19% Similarity=0.058 Sum_probs=31.3
Q ss_pred CCcccCchhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 158 IQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++++++....-.+.++|++......+..+.++.+.|+++|+.|+.|..
T Consensus 147 id~~~le~~i~~~tkaVi~~~~~G~p~dl~~I~~la~~~gi~vIeDaa 194 (438)
T PRK15407 147 IDASLLEAAVSPKTKAIMIAHTLGNPFDLAAVKAFCDKHNLWLIEDNC 194 (438)
T ss_pred cCHHHHHHHcCcCCeEEEEeCCCCChhhHHHHHHHHHHCCCEEEEECc
Confidence 445554432224678888762222234467888899999999999974
No 143
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=41.85 E-value=79 Score=21.73 Aligned_cols=46 Identities=11% Similarity=0.015 Sum_probs=29.5
Q ss_pred CChhHHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEEe
Q 028446 105 DDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRP 150 (209)
Q Consensus 105 ~D~~G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~~ 150 (209)
+...=+.+.+.|++.|+.+........ ..+..+.+.||+|.+--+.
T Consensus 70 ~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~ 116 (121)
T cd07266 70 SEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFY 116 (121)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEE
Confidence 334445688889999998754322222 2345778889999985443
No 144
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=41.58 E-value=53 Score=26.70 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=27.6
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHCCC-eEEEeCC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~g~-~v~~D~~ 205 (209)
+.+.+.+++.. +.+.+..+++.+++.+. ++++||.
T Consensus 73 ~~~ai~iG~l~-~~~~~~~i~~~~~~~~~~~vv~DPv 108 (266)
T PRK06427 73 RIDAVKIGMLA-SAEIIETVAEALKRYPIPPVVLDPV 108 (266)
T ss_pred CCCEEEECCcC-CHHHHHHHHHHHHhCCCCCEEEcCc
Confidence 67889998643 56777788888888876 8999996
No 145
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=41.21 E-value=67 Score=28.84 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCceec-CHHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeE-EEEEecCChhHHHHHHHHHhCCCcc
Q 028446 46 GGSIPV-AIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG-LIGAYGDDQQGQLFVSNMQFSGVDV 123 (209)
Q Consensus 46 g~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~-~ig~vG~D~~G~~i~~~L~~~gVd~ 123 (209)
+.+..+ +.+.+.++++.-.+ ......||.++-+|-.|| .++.... +.+.++. +.+.+.| +.+|-.
T Consensus 68 aaE~~~~~~~~f~~~~~~~~~-------~~~~r~GGnA~imAn~la-~l~~~~Vil~~p~~s----k~~~~l~-~~~i~~ 134 (444)
T PF04587_consen 68 AAERFVSNSELFRELVDAAFK-------YDEERMGGNAGIMANRLA-NLEGCPVILYAPILS----KEQAELF-NDNIYV 134 (444)
T ss_dssp -EEEEB--THHHHHHHHHHH---------SEEEEESHHHHHHHHHC-CTT-SEEEEE-SS------HHHHTTS-SSSEEE
T ss_pred ceEEEeechHHHHHHHHHhhc-------ccccccCchHHHHHHHHH-hCCCCEEEEecCcCC----HHHHHhc-ccCccc
Confidence 344455 55667777752111 223459999999999998 7865544 4443544 3344555 333311
Q ss_pred cce--------e----ecC-CCceeEEEEEcCCC-----------CeeEEecCCcCCCCCc-ccCc---hhhhCCccEEE
Q 028446 124 SRL--------R----MKR-GPTGQCVCLVDASG-----------NRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLV 175 (209)
Q Consensus 124 ~~v--------~----~~~-~~T~~~~i~~~~~G-----------~rt~~~~~ga~~~l~~-~~i~---~~~l~~~~~v~ 175 (209)
--+ . ..+ .+.-.-+|+=-+.| +|-++.+.-.+..+.. +++. .+...++|.++
T Consensus 135 P~v~~~~~~l~~~~~a~~~~~~~~iH~IlEy~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~v 214 (444)
T PF04587_consen 135 PVVENGELKLIHPREAFKEDDEDDIHLILEYKKGEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAV 214 (444)
T ss_dssp EEEETTEEEEEEGGGS-STT----EEEEEEE-TTEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEE
T ss_pred ccccCCcccccCchhccccCCccceEEEEEcCCCCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEE
Confidence 100 0 000 12222333322233 3434444433444443 2332 12335699999
Q ss_pred Ee-ccc-C----C---H----HHHHHHHHHHH-HCCCeEEEeCCCC
Q 028446 176 LR-FGM-F----N---F----EVIQAAIRIAK-QEGLSVSMDLASF 207 (209)
Q Consensus 176 ~~-~~~-~----~---~----~~~~~l~~~a~-~~g~~v~~D~~~~ 207 (209)
++ +.+ . + . +.+.+.++..+ ..+++|-|...++
T Consensus 215 lSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~ 260 (444)
T PF04587_consen 215 LSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASF 260 (444)
T ss_dssp EE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----
T ss_pred EeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEeccc
Confidence 99 433 2 1 1 22334444455 6889998887654
No 146
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=40.80 E-value=2.4e+02 Score=24.47 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcC
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG 94 (209)
.+++++.++++.+. .......||..+..++..+ .++
T Consensus 53 ~~~le~~lA~l~g~-----~~v~~~~gg~~Ai~~~l~a-ll~ 88 (382)
T TIGR02080 53 RDLLQQALAELEGG-----AGAVVTNTGMSAIHLVTTA-LLG 88 (382)
T ss_pred HHHHHHHHHHHhCC-----CcEEEEcCHHHHHHHHHHH-HcC
Confidence 56777888876542 3566777877777776665 443
No 147
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=40.77 E-value=36 Score=25.80 Aligned_cols=28 Identities=39% Similarity=0.431 Sum_probs=22.9
Q ss_pred eEecCChHHHHHHHHHhhcCCC-eEEEEE
Q 028446 75 KTIAGGSVTNTIRGLSVGFGVP-CGLIGA 102 (209)
Q Consensus 75 ~~~~GG~~~N~a~~la~rlG~~-~~~ig~ 102 (209)
....||+.+|+|+.+|..||.+ +.++|+
T Consensus 135 ~~~~g~sV~~~a~~lA~~lG~~~I~L~G~ 163 (170)
T PF01973_consen 135 ILYSGGSVANTALQLAYYLGFKPIYLIGQ 163 (170)
T ss_pred cCCCCccHHHHHHHHHHHHCCCcEEEEee
Confidence 6889999999999999888975 556553
No 148
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=40.59 E-value=65 Score=21.77 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEE
Q 028446 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 108 ~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~ 149 (209)
.=+.+.+.+++.|+............+..+.+.||+|.+--+
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi 108 (113)
T cd08345 67 EFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLEL 108 (113)
T ss_pred HHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEE
Confidence 456688899999998753322222346677788999988543
No 149
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=40.03 E-value=2e+02 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=26.1
Q ss_pred hhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 167 ~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
...+.|+|++.. |.+...+++..+.++|+ .++|.++.
T Consensus 65 ~~~~vD~Vf~al---P~~~~~~~v~~a~~aG~-~VID~S~~ 101 (343)
T PRK00436 65 ILAGADVVFLAL---PHGVSMDLAPQLLEAGV-KVIDLSAD 101 (343)
T ss_pred HhcCCCEEEECC---CcHHHHHHHHHHHhCCC-EEEECCcc
Confidence 446789999873 55666777777777774 66787753
No 150
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=39.70 E-value=75 Score=18.27 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhCCCcccceeecCCCceeEEEE
Q 028446 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL 139 (209)
Q Consensus 108 ~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~ 139 (209)
+-..+.+.|.+.+++...+.........++++
T Consensus 16 ~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v 47 (60)
T cd04868 16 VAAKIFSALAEAGINVDMISQSESEVNISFTV 47 (60)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEE
Confidence 44568889999999998776543224444444
No 151
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=39.52 E-value=52 Score=28.85 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=33.7
Q ss_pred CCCcccCchhhhCCccEEEEec-cc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 157 KIQADELIAEDVKGSKWLVLRF-GM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 157 ~l~~~~i~~~~l~~~~~v~~~~-~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.++.+++....-++.+++++.+ +- .+.+.+.++++.|+++++.++.|=
T Consensus 150 ~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DE 203 (393)
T COG0436 150 KPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDE 203 (393)
T ss_pred cCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeh
Confidence 3444444433334689999983 21 246889999999999999999883
No 152
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=38.78 E-value=2.6e+02 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=25.6
Q ss_pred CccEEEEeccc---CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~~~---~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.++|+++..- ....-+.++.+.|+++|+.+++|-.
T Consensus 158 ~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a 196 (387)
T PRK09331 158 PPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGA 196 (387)
T ss_pred CCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECC
Confidence 57788887211 1233467788889999999999974
No 153
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=38.71 E-value=2.4e+02 Score=23.73 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=31.1
Q ss_pred ceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCC
Q 028446 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGV 121 (209)
Q Consensus 74 ~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gV 121 (209)
...-.||.+.-++.+|+ .+|.+-..|-.-- .+.++.+.+.+.+.+.
T Consensus 130 lilGAGGAarAv~~aL~-~~g~~~i~V~NRt-~~ra~~La~~~~~~~~ 175 (283)
T COG0169 130 LILGAGGAARAVAFALA-EAGAKRITVVNRT-RERAEELADLFGELGA 175 (283)
T ss_pred EEECCcHHHHHHHHHHH-HcCCCEEEEEeCC-HHHHHHHHHHhhhccc
Confidence 35567888888888888 7886533333222 2467888888888765
No 154
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=38.53 E-value=63 Score=26.78 Aligned_cols=37 Identities=5% Similarity=0.087 Sum_probs=24.2
Q ss_pred hCCccEEEEecccCCHH---HHHHHHHHHHH--CCCeEEEeCC
Q 028446 168 VKGSKWLVLRFGMFNFE---VIQAAIRIAKQ--EGLSVSMDLA 205 (209)
Q Consensus 168 l~~~~~v~~~~~~~~~~---~~~~l~~~a~~--~g~~v~~D~~ 205 (209)
+.+.|.+++++.- +.+ .+.++++..++ .+.++++||.
T Consensus 86 l~~~d~i~~G~l~-s~~~~~~i~~~l~~~~~~~~~~~vv~DPv 127 (281)
T PRK08176 86 LRQLRAVTTGYMG-SASQIKILAEWLTALRADHPDLLIMVDPV 127 (281)
T ss_pred cccCCEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCcEEeCCc
Confidence 3478999999643 434 34444444333 5789999997
No 155
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=38.25 E-value=2.8e+02 Score=24.45 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=49.4
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhh--CCccEE
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV--KGSKWL 174 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l--~~~~~v 174 (209)
-.++..- ..||+.+.+.++++|.+...+....+ ..++++++...+- .+.+.|
T Consensus 82 kVLv~~n--G~FG~R~~~ia~~~g~~v~~~~~~wg------------------------~~v~p~~v~~~L~~~~~~~~V 135 (383)
T COG0075 82 KVLVVVN--GKFGERFAEIAERYGAEVVVLEVEWG------------------------EAVDPEEVEEALDKDPDIKAV 135 (383)
T ss_pred eEEEEeC--ChHHHHHHHHHHHhCCceEEEeCCCC------------------------CCCCHHHHHHHHhcCCCccEE
Confidence 3444444 45899999999999988754443211 2355666643221 133333
Q ss_pred ---EEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 175 ---VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 175 ---~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
|.+.+-.-..-+.++.+.+|++|..+++|.-+
T Consensus 136 ~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVs 170 (383)
T COG0075 136 AVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVS 170 (383)
T ss_pred EEEeccCcccccCcHHHHHHHHHHcCCEEEEEecc
Confidence 44321100122556777888999999999743
No 156
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=38.02 E-value=98 Score=21.44 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCcccceeec---CCCceeEEEEEcCCCCeeEEec
Q 028446 109 GQLFVSNMQFSGVDVSRLRMK---RGPTGQCVCLVDASGNRTMRPC 151 (209)
Q Consensus 109 G~~i~~~L~~~gVd~~~v~~~---~~~T~~~~i~~~~~G~rt~~~~ 151 (209)
=+.+.+.|++.|+........ ....+..+.+.||+|.+--+.+
T Consensus 82 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 82 VDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred HHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 456778899999987654332 1234556677899999865544
No 157
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=37.73 E-value=1.1e+02 Score=24.90 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=32.2
Q ss_pred hCCccEEEEeccc-CCHHHHHHHHHHHHHCCCeEEEeCCCCC
Q 028446 168 VKGSKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (209)
Q Consensus 168 l~~~~~v~~~~~~-~~~~~~~~l~~~a~~~g~~v~~D~~~~~ 208 (209)
....|.+.++++. ...+.+.++++..|+..+++++-|++..
T Consensus 30 ~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~ 71 (232)
T PRK04169 30 ESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIE 71 (232)
T ss_pred hcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 3578999999654 2456788888888888899999998653
No 158
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=36.68 E-value=37 Score=25.90 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCccc
Q 028446 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 82 ~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~ 124 (209)
-.|+++.++ .+|...-+|-.+|=+ ..+ +.|++.|.|..
T Consensus 16 TGNI~R~ca-~tga~LhlI~PlGF~-l~d---k~lkRAGlDY~ 53 (155)
T COG0219 16 TGNIIRTCA-ATGAELHLIEPLGFD-LDD---KRLKRAGLDYH 53 (155)
T ss_pred hhHHHHHHH-hcCCeEEEEccCCCc-cch---hhhhhcccchH
Confidence 579999999 899999999999966 222 45677888863
No 159
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.67 E-value=1.3e+02 Score=26.46 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=25.7
Q ss_pred ecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCc
Q 028446 77 IAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD 122 (209)
Q Consensus 77 ~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd 122 (209)
-.|+.|.-.|..|+ +.|.+|.++..-..+.. +...+.|.+.|+.
T Consensus 12 G~g~~G~~~A~~l~-~~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 12 GAGVSGLALAKFLK-KLGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred CCCHHHHHHHHHHH-HCCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 34556677777887 78998877654222222 2233456666654
No 160
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=36.65 E-value=65 Score=28.82 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=27.2
Q ss_pred ccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+.+.+++ +.+.+.+..+++.+++.|++++|||.
T Consensus 72 ~~~ik~G~-l~~~e~~~~i~~~~k~~g~~vv~DPv 105 (448)
T PRK08573 72 IDAAKTGM-LSNREIIEAVAKTVSKYGFPLVVDPV 105 (448)
T ss_pred CCEEEECC-cCCHHHHHHHHHHHHHcCCCEEEcCc
Confidence 45666664 33678889999999999999999995
No 161
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=35.94 E-value=1.1e+02 Score=23.70 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=26.4
Q ss_pred CCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEe-CCC
Q 028446 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD-LAS 206 (209)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D-~~~ 206 (209)
.+++++.+...- +.+...++++.++++|+++.++ +++
T Consensus 76 aGad~i~~h~~~-~~~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 76 AGADIVTVLGAA-PLSTIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred cCCCEEEEEeeC-CHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 478888887432 3345677888888899988876 544
No 162
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=35.76 E-value=94 Score=27.47 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCCcccCchhhhCCccEEEEe--ccc-CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 156 VKIQADELIAEDVKGSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 156 ~~l~~~~i~~~~l~~~~~v~~~--~~~-~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+..+++....-++.++|.++ .+. ....-+.++.+.||++|+.|++|..
T Consensus 148 g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 148 GLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred CCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 3454444433222468999998 222 1123378899999999999999975
No 163
>PRK10534 L-threonine aldolase; Provisional
Probab=35.02 E-value=1.1e+02 Score=25.44 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=24.7
Q ss_pred CccEEEEec----ccCCHHHHHHHHHHHHHCCCeEEEe
Q 028446 170 GSKWLVLRF----GMFNFEVIQAAIRIAKQEGLSVSMD 203 (209)
Q Consensus 170 ~~~~v~~~~----~~~~~~~~~~l~~~a~~~g~~v~~D 203 (209)
+.++|+++. .+.+.+.+.++++.++++++.+++|
T Consensus 129 ~~~lv~l~np~~G~v~~~~~l~~i~~~~~~~~~~lvvD 166 (333)
T PRK10534 129 RTRLLSLENTHNGKVLPREYLKQAWEFTRERNLALHVD 166 (333)
T ss_pred cceEEEEecCCCCeecCHHHHHHHHHHHHHcCCeEEee
Confidence 367888872 1125667778888898889999888
No 164
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=34.96 E-value=1.5e+02 Score=24.06 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=25.8
Q ss_pred cCCCeEEEEEecCChhHHHHHHHHHhCCCcccce
Q 028446 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL 126 (209)
Q Consensus 93 lG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v 126 (209)
-+.++.|++..-++ .-+.+.+.|++-|++++--
T Consensus 38 ~~~kVkFvTNttk~-Sk~~l~~rL~rlgf~v~ee 70 (262)
T KOG3040|consen 38 QHVKVKFVTNTTKE-SKRNLHERLQRLGFDVSEE 70 (262)
T ss_pred cCceEEEEecCcch-hHHHHHHHHHHhCCCccHH
Confidence 46789999988887 4556778899999988643
No 165
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=34.89 E-value=1.2e+02 Score=23.51 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeC-CC
Q 028446 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL-AS 206 (209)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~-~~ 206 (209)
..+|++.+.+.. +.....++++.++++|+++..+. ++
T Consensus 75 ~Gad~i~vh~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~ 112 (206)
T TIGR03128 75 AGADIVTVLGVA-DDATIKGAVKAAKKHGKEVQVDLINV 112 (206)
T ss_pred cCCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 478888887543 44456788888999999999884 54
No 166
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=34.88 E-value=2.2e+02 Score=24.72 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=44.7
Q ss_pred EEEEec-CChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEe
Q 028446 99 LIGAYG-DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLR 177 (209)
Q Consensus 99 ~ig~vG-~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~ 177 (209)
-++.+| -...|..+...|++.|.++..+-+. . . ++ ..+.+.++|+|.++
T Consensus 100 ~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~--~-------------------------~--~~-~~~~~~~aDlVila 149 (374)
T PRK11199 100 PVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD--D-------------------------W--DR-AEDILADAGMVIVS 149 (374)
T ss_pred eEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC--c-------------------------c--hh-HHHHHhcCCEEEEe
Confidence 366776 6789999999999988653222211 0 0 00 12345678888887
Q ss_pred cccCCHHHHHHHHHHHHHC-CCeEEEeCCCCC
Q 028446 178 FGMFNFEVIQAAIRIAKQE-GLSVSMDLASFE 208 (209)
Q Consensus 178 ~~~~~~~~~~~l~~~a~~~-g~~v~~D~~~~~ 208 (209)
. |......+++..... .-.+++|.++.+
T Consensus 150 v---P~~~~~~~~~~l~~l~~~~iv~Dv~SvK 178 (374)
T PRK11199 150 V---PIHLTEEVIARLPPLPEDCILVDLTSVK 178 (374)
T ss_pred C---cHHHHHHHHHHHhCCCCCcEEEECCCcc
Confidence 3 444444444433221 235788887754
No 167
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=34.84 E-value=2.9e+02 Score=23.61 Aligned_cols=66 Identities=9% Similarity=-0.034 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCc
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD 122 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd 122 (209)
.+++++.+++..+. .+.......||..+|.+...+ .++-.-..+-..-+.+.-..+...++-.|..
T Consensus 56 ~~~Le~~lA~~~g~---~~e~ilv~~gg~~a~~~~~~a-l~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~ 121 (346)
T TIGR03576 56 EEKVQELGREHLGG---PEEKILVFNRTSSAILATILA-LEPPGRKVVHYLPEKPAHPSIPRSCKLAGAE 121 (346)
T ss_pred HHHHHHHHHHHcCC---CcceEEEECCHHHHHHHHHHH-hCCCCCEEEECCCCCCCchhHHHHHHHcCCE
Confidence 34444445444331 123667788888899888876 5543222222223333444455666666643
No 168
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=34.75 E-value=63 Score=23.06 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecC
Q 028446 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL 152 (209)
Q Consensus 108 ~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ 152 (209)
.=+.+.+.|++.|+....-.......+..+.+.||+|.+-.+...
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~ 115 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTG 115 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecC
Confidence 346688889999998642211111345677788999999655543
No 169
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=34.65 E-value=28 Score=24.31 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=57.3
Q ss_pred CChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCC
Q 028446 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKI 158 (209)
Q Consensus 79 GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l 158 (209)
|.-+......+. +......+++.+..++ +...+..++.|+.. +-...+- +-+++-+--++..+. ..
T Consensus 9 G~~g~~~~~~~~-~~~~~~~v~~v~d~~~--~~~~~~~~~~~~~~-~~~~~~l-------l~~~~~D~V~I~tp~---~~ 74 (120)
T PF01408_consen 9 GSIGRRHLRALL-RSSPDFEVVAVCDPDP--ERAEAFAEKYGIPV-YTDLEEL-------LADEDVDAVIIATPP---SS 74 (120)
T ss_dssp SHHHHHHHHHHH-HTTTTEEEEEEECSSH--HHHHHHHHHTTSEE-ESSHHHH-------HHHTTESEEEEESSG---GG
T ss_pred cHHHHHHHHHHH-hcCCCcEEEEEEeCCH--HHHHHHHHHhcccc-hhHHHHH-------HHhhcCCEEEEecCC---cc
Confidence 444555555665 5666777777777763 33444466667661 1111110 000111111121111 01
Q ss_pred CcccCchhhhCCccEEEEe-cccCCHHHHHHHHHHHHHCCCeEEEe
Q 028446 159 QADELIAEDVKGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMD 203 (209)
Q Consensus 159 ~~~~i~~~~l~~~~~v~~~-~~~~~~~~~~~l~~~a~~~g~~v~~D 203 (209)
.. ++-...++....|+++ ....+.+...++++.++++|+++.++
T Consensus 75 h~-~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 75 HA-EIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp HH-HHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred hH-HHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 11 1113456666788888 32235677889999999999888764
No 170
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.55 E-value=99 Score=18.69 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=27.0
Q ss_pred EEEEEecCC-----hhHHHHHHHHHhCCCcccceeecCCCceeEEEEE
Q 028446 98 GLIGAYGDD-----QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (209)
Q Consensus 98 ~~ig~vG~D-----~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~ 140 (209)
.+++.+|.. .....+.+.|.+.||+.+.+.........++++-
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~ 49 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVA 49 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 466677753 2234688889999999987764322344555443
No 171
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=34.54 E-value=1.2e+02 Score=20.43 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCcccceeecCCCce-eEEEEEcCCCCeeEE
Q 028446 109 GQLFVSNMQFSGVDVSRLRMKRGPTG-QCVCLVDASGNRTMR 149 (209)
Q Consensus 109 G~~i~~~L~~~gVd~~~v~~~~~~T~-~~~i~~~~~G~rt~~ 149 (209)
-+.+.+.|++.|+....-.. ..+-+ ..+.+.||+|.+-.+
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DP~Gn~i~~ 108 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPT-DEPWGVRRFFVRDPFGKLVNI 108 (112)
T ss_pred HHHHHHHHHhcCCeEecCCc-cCCCceEEEEEECCCCCEEEE
Confidence 35677889999988643221 12223 466788999988544
No 172
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=34.39 E-value=86 Score=21.01 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCC
Q 028446 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSG 120 (209)
Q Consensus 82 ~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~g 120 (209)
....++. + ++|..+.|-+|=++|-..+.+.+.|.+.|
T Consensus 24 ~L~~ai~-~-~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 24 ELKAAII-E-KFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHHHH-H-HhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 3455555 4 79999999999999999999999998876
No 173
>PRK05957 aspartate aminotransferase; Provisional
Probab=34.38 E-value=1.2e+02 Score=26.07 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCcccCchhhhCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 158 IQADELIAEDVKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.+++....-.+.+++++. ..- .+.+...++++.|+++|+.++.|-.
T Consensus 148 ~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~ 201 (389)
T PRK05957 148 LQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEA 201 (389)
T ss_pred cCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEecc
Confidence 44444433222357788776 211 2456688899999999999998853
No 174
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=34.08 E-value=83 Score=20.95 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCe
Q 028446 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNR 146 (209)
Q Consensus 109 G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~r 146 (209)
=+.+.+.+++.|+....-..........+.+.||+|.+
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ 104 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNR 104 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-E
T ss_pred HHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCE
Confidence 34567789999988543222222334778888999987
No 175
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=33.77 E-value=3.2e+02 Score=23.78 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=22.7
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|+++..-.| .-...++.+.|+++|+.+++|-.
T Consensus 136 ~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDea 175 (386)
T PRK08045 136 EKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNT 175 (386)
T ss_pred cCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECC
Confidence 35677777721112 11245667778888888888864
No 176
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=33.39 E-value=1.2e+02 Score=20.44 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhCCCcccceeecCCCc-eeEEEEEcCCCCeeEEe
Q 028446 108 QGQLFVSNMQFSGVDVSRLRMKRGPT-GQCVCLVDASGNRTMRP 150 (209)
Q Consensus 108 ~G~~i~~~L~~~gVd~~~v~~~~~~T-~~~~i~~~~~G~rt~~~ 150 (209)
.=+.+.+.+++.|+....-.. ..+. +..+.+.||+|.+-.+.
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DP~Gn~iei~ 119 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQ-DVFWGGYSGYFADPDGHLWEVA 119 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCc-cCCCCceEEEEECCCCCEEEEe
Confidence 346677888899987643221 1233 56777889999885554
No 177
>PRK08064 cystathionine beta-lyase; Provisional
Probab=32.87 E-value=3.3e+02 Score=23.66 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=23.2
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|+++..-.| ...+.++.+.|++.|+.+++|-.
T Consensus 137 ~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a 176 (390)
T PRK08064 137 PNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNT 176 (390)
T ss_pred CCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECC
Confidence 35677777721111 12245677778888999988864
No 178
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=32.75 E-value=72 Score=22.72 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=31.4
Q ss_pred EEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEec
Q 028446 100 IGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPC 151 (209)
Q Consensus 100 ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~ 151 (209)
++..-++..=+.+.+.|++.|+.+.........-+.++.+.||+|..--+..
T Consensus 70 iaf~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~ 121 (131)
T cd08364 70 IAFKISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHT 121 (131)
T ss_pred EEEEcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEec
Confidence 4433333334568899999999764322111123567778899998855544
No 179
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=32.49 E-value=2.8e+02 Score=22.69 Aligned_cols=28 Identities=18% Similarity=-0.005 Sum_probs=17.3
Q ss_pred cEEEEecccCCHHHHHHHHHHHHHCCCeEE
Q 028446 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVS 201 (209)
Q Consensus 172 ~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~ 201 (209)
..++++....|.+. .+++.|+++|++++
T Consensus 207 ~~~v~D~~y~p~~T--~ll~~A~~~G~~~v 234 (270)
T TIGR00507 207 GMVVYDMVYNPGET--PFLAEAKSLGTKTI 234 (270)
T ss_pred CCEEEEeccCCCCC--HHHHHHHHCCCeee
Confidence 34556622224433 58899999998764
No 180
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=32.44 E-value=1.6e+02 Score=19.80 Aligned_cols=36 Identities=3% Similarity=-0.044 Sum_probs=29.0
Q ss_pred CCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+++.|++.... +.+....+...|+.+++++.+..+
T Consensus 23 gkakLViiA~Da-~~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 23 CNVLQVYIAKDA-EEHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred CCeeEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEeCC
Confidence 468889988654 678888899999999999976654
No 181
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=32.40 E-value=30 Score=23.10 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=31.7
Q ss_pred EecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcc
Q 028446 76 TIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDV 123 (209)
Q Consensus 76 ~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~ 123 (209)
...+|.+...+..|. ..|..+.+++.+|. ...+.|++.||.+
T Consensus 36 ~~~~~~~~~~~~~l~-~~~v~~li~~~iG~-----~~~~~L~~~gI~v 77 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLA-EEGVDVLICGGIGE-----GAFRALKEAGIKV 77 (94)
T ss_dssp CCSSCHSTHHHHHHH-HTTESEEEESCSCH-----HHHHHHHHTTSEE
T ss_pred ccccccchhHHHHHH-HcCCCEEEEeCCCH-----HHHHHHHHCCCEE
Confidence 334567778888887 68889888888754 4677888888876
No 182
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=32.19 E-value=98 Score=20.68 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=28.4
Q ss_pred HHhhcCCCeEEEEEecCChhHHHHHHHHHhCC
Q 028446 89 LSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSG 120 (209)
Q Consensus 89 la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~g 120 (209)
.+ ++|..+.|-+|-.+|-..+.+++.|.+.|
T Consensus 28 ~~-~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 28 EQ-KFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred HH-HhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 35 79999999999999999999999999877
No 183
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=31.79 E-value=87 Score=20.24 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=22.6
Q ss_pred eEEEEEecCChhH--HHHHHHHHhCCCcccceee
Q 028446 97 CGLIGAYGDDQQG--QLFVSNMQFSGVDVSRLRM 128 (209)
Q Consensus 97 ~~~ig~vG~D~~G--~~i~~~L~~~gVd~~~v~~ 128 (209)
..+++.+|.|..| ..+.+.|.+.|.++..+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~ 35 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQ 35 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEE
Confidence 3578999999888 6788889999988765543
No 184
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=31.73 E-value=2.9e+02 Score=22.71 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=30.1
Q ss_pred CCCcccCchhhh--CCccEEEEe-ccc-CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 157 KIQADELIAEDV--KGSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 157 ~l~~~~i~~~~l--~~~~~v~~~-~~~-~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.++++++....- .+.++|+++ ... ....-+.++.+.|+++|+.+++|-.
T Consensus 139 ~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 139 GIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred CCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECc
Confidence 355666643221 357777777 221 1112256788889999999999953
No 185
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=31.70 E-value=1.5e+02 Score=24.29 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=32.7
Q ss_pred hhCCccEEEEeccc-CCHHHHHHHHHHHH-HCCCeEEEeCCCC
Q 028446 167 DVKGSKWLVLRFGM-FNFEVIQAAIRIAK-QEGLSVSMDLASF 207 (209)
Q Consensus 167 ~l~~~~~v~~~~~~-~~~~~~~~l~~~a~-~~g~~v~~D~~~~ 207 (209)
.-...|.+.++++. ...+.+.++++..| +.++++++-|++.
T Consensus 38 ~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 38 AEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred HHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCCh
Confidence 34579999999755 24567888888888 8999999999875
No 186
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=31.64 E-value=1.2e+02 Score=24.63 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=23.9
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.+.+.+++.- +.+.+..+.+..++.+.++++||-
T Consensus 60 ~~~aikiG~l~-~~~~v~~i~~~l~~~~~~vV~DPV 94 (246)
T PF08543_consen 60 KFDAIKIGYLG-SAEQVEIIADFLKKPKIPVVLDPV 94 (246)
T ss_dssp C-SEEEE-S-S-SHHHHHHHHHHHHHTTTEEEEE--
T ss_pred cccEEEEcccC-CchhhhhHHHHHhccCCCEEEecc
Confidence 68999999643 566677777777778889999994
No 187
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=31.46 E-value=2.7e+02 Score=22.18 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=24.0
Q ss_pred hhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEE
Q 028446 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 166 ~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~ 202 (209)
+.++++|+|..... +.+....+-+.|++++++.+.
T Consensus 107 ~~~~~~DvVi~~~d--~~~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 107 ELIAGYDLVLDCTD--NFATRYLINDACVKLGKPLVS 141 (228)
T ss_pred HHHhCCCEEEEcCC--CHHHHHHHHHHHHHcCCCEEE
Confidence 35678898887732 344555677788888887754
No 188
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=31.44 E-value=1.4e+02 Score=25.77 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEecCChhHHHHHHHHHhCCCccccee
Q 028446 100 IGAYGDDQQGQLFVSNMQFSGVDVSRLR 127 (209)
Q Consensus 100 ig~vG~D~~G~~i~~~L~~~gVd~~~v~ 127 (209)
|+.+|...+|..+...|.+.|-++..+-
T Consensus 4 I~ViGaGswGTALA~~la~ng~~V~lw~ 31 (329)
T COG0240 4 IAVIGAGSWGTALAKVLARNGHEVRLWG 31 (329)
T ss_pred EEEEcCChHHHHHHHHHHhcCCeeEEEe
Confidence 5778888888888888888774444333
No 189
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=31.36 E-value=2e+02 Score=20.76 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=25.3
Q ss_pred hhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEE
Q 028446 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 165 ~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~ 202 (209)
...+.+.|+|..+.. +.+....+.+.+++.+++++.
T Consensus 84 ~~~~~~~diVi~~~d--~~~~~~~l~~~~~~~~i~~i~ 119 (143)
T cd01483 84 DDFLDGVDLVIDAID--NIAVRRALNRACKELGIPVID 119 (143)
T ss_pred HHHhcCCCEEEECCC--CHHHHHHHHHHHHHcCCCEEE
Confidence 345678898887732 345566778889999987654
No 190
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=31.20 E-value=89 Score=19.52 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEE
Q 028446 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 109 G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~ 149 (209)
-..|-...-=.|+...... ...++-.++++++.+|.|.+.
T Consensus 20 ~~~i~~FCfP~G~~~~~~~-~~~~~~f~FvLT~~~G~r~Yg 59 (65)
T PF03456_consen 20 PPSIPMFCFPDGIEISSQS-RPPPQFFSFVLTDEDGSRLYG 59 (65)
T ss_dssp HHHHHHHHS-S-CCCCGGG--GSSCEEEEEEE-TTS-EEEE
T ss_pred hhhCCccCCCCCcEeeccc-cCCCeEEEEEEECCCCCEEEE
Confidence 3444455555677765444 234889999999999999764
No 191
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=31.04 E-value=3.1e+02 Score=22.80 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=24.7
Q ss_pred eEecCChHHHHHHHHHhhcCCCeEEEEEecCC-hhHHHHHHHHHh
Q 028446 75 KTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDD-QQGQLFVSNMQF 118 (209)
Q Consensus 75 ~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D-~~G~~i~~~L~~ 118 (209)
..-.||.+.-++.+|+ .+|.+- +..+..+ .-.+.+.+.+++
T Consensus 132 IlGaGGaaraia~aL~-~~G~~~--I~I~nR~~~ka~~la~~l~~ 173 (284)
T PRK12549 132 QLGAGGAGAAVAHALL-TLGVER--LTIFDVDPARAAALADELNA 173 (284)
T ss_pred EECCcHHHHHHHHHHH-HcCCCE--EEEECCCHHHHHHHHHHHHh
Confidence 4557888888888887 788743 2233333 345555555544
No 192
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=30.99 E-value=1e+02 Score=20.21 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCe
Q 028446 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNR 146 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~r 146 (209)
+.+.+.+++.|+....... +......+.+.||+|.+
T Consensus 76 ~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~DP~G~~ 111 (114)
T cd07245 76 DAFRARLKAAGVPYTESDV-PGDGVRQLFVRDPDGNR 111 (114)
T ss_pred HHHHHHHHHcCCCcccccC-CCCCccEEEEECCCCCE
Confidence 4567889999998654332 12455667788998876
No 193
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=30.82 E-value=85 Score=26.94 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=27.7
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+.++|++. ..- .+.+...++++.|+++++.++.|-.
T Consensus 165 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~ 207 (385)
T PRK09276 165 KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAA 207 (385)
T ss_pred ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecc
Confidence 467888887 221 2466788899999999999998853
No 194
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.80 E-value=1.3e+02 Score=24.99 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=30.2
Q ss_pred hhhCCccEEEEecccC------CHHHHHHHHHHHHHCCCeEEEe
Q 028446 166 EDVKGSKWLVLRFGMF------NFEVIQAAIRIAKQEGLSVSMD 203 (209)
Q Consensus 166 ~~l~~~~~v~~~~~~~------~~~~~~~l~~~a~~~g~~v~~D 203 (209)
..+..-+||.++++-. .++-++.+.++|+++|++++|=
T Consensus 184 ~~~~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFffK 227 (261)
T PF07505_consen 184 LDLEGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFFK 227 (261)
T ss_pred ccCCCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 3556789999996431 2688999999999999999883
No 195
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=30.61 E-value=3.5e+02 Score=23.21 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=24.8
Q ss_pred hhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 167 ~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
.+.++|++++.. |.+...++++.+.+.|+++ +|.++
T Consensus 73 ~~~~~DvVf~a~---p~~~s~~~~~~~~~~G~~v-IDls~ 108 (349)
T PRK08664 73 AVDDVDIVFSAL---PSDVAGEVEEEFAKAGKPV-FSNAS 108 (349)
T ss_pred HhcCCCEEEEeC---ChhHHHHHHHHHHHCCCEE-EECCc
Confidence 346889987763 5555667777777888875 66554
No 196
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=30.41 E-value=51 Score=21.50 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCeEEEeCCCC
Q 028446 186 IQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 186 ~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
..++++.|++.+.+++++.++.
T Consensus 6 ~~~al~~A~~~~kpvlv~f~a~ 27 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFGAD 27 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEETT
T ss_pred HHHHHHHHHHcCCCEEEEEECC
Confidence 4567888999999999998654
No 197
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.17 E-value=1.4e+02 Score=18.51 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCcccceeecCCCceeEEEEE
Q 028446 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (209)
Q Consensus 109 G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~ 140 (209)
...+.+.|.+.||+...+.....+...++++-
T Consensus 17 ~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~ 48 (65)
T cd04918 17 LERAFHVLYTKGVNVQMISQGASKVNISLIVN 48 (65)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 45677888999999876665444555555543
No 198
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=30.09 E-value=4.2e+02 Score=24.00 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=23.0
Q ss_pred ceEecCChHHHHHHHHHhhcCCCeEEEEEecC
Q 028446 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGD 105 (209)
Q Consensus 74 ~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~ 105 (209)
-....||.+..+|-.+|...|.+| ++.++.
T Consensus 105 ~~~rmGGnAgimAn~la~~~g~~V--ia~~~~ 134 (453)
T PRK14038 105 DELRMGGQVGIMANLLGGVYGVPV--IAHVPQ 134 (453)
T ss_pred ceEEeCChHHHHHHHHHhhcCCce--EEECCC
Confidence 369999999999999973456776 666664
No 199
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.02 E-value=1.4e+02 Score=20.33 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=25.8
Q ss_pred ecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCee
Q 028446 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (209)
Q Consensus 103 vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt 147 (209)
+.+...=+.+.+.|++.|+...............+.+.||+|..-
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~i 122 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRI 122 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEE
Confidence 333234467888899999876532211112222345679998763
No 200
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=29.99 E-value=3.5e+02 Score=22.98 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=30.4
Q ss_pred CCcccCchhhhCCccEEEEec-cc--CCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 158 IQADELIAEDVKGSKWLVLRF-GM--FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~~-~~--~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++++++...+-.+.++|+++. .. .-..-+.++.+.||++|+.+++|...
T Consensus 127 ~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~ 178 (371)
T PF00266_consen 127 LDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQ 178 (371)
T ss_dssp CSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TT
T ss_pred hhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechh
Confidence 334555433337888898882 21 10112557778888999999999864
No 201
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=29.74 E-value=60 Score=29.77 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+..+++++.|+++|++|++|..
T Consensus 74 t~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 74 TIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEec
Confidence 457789999999999999999974
No 202
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=29.67 E-value=1.5e+02 Score=20.33 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCcccceeecCC-CceeEEEEEcCCCCeeEE
Q 028446 109 GQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 109 G~~i~~~L~~~gVd~~~v~~~~~-~T~~~~i~~~~~G~rt~~ 149 (209)
=+.+.+.|++.|+.......... ..+..+.+.||+|.+--+
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~ 116 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMEL 116 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEE
Confidence 35688889999998643221112 345677788999998543
No 203
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=29.35 E-value=1.8e+02 Score=19.64 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=28.4
Q ss_pred CCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+..|++.... .+..+..+...|.++++++++-++
T Consensus 28 g~~~~v~iA~Da-~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 28 DQVTSLIIAEDV-EVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred CCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEECC
Confidence 357888888555 345778899999999999998765
No 204
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=29.32 E-value=1.5e+02 Score=21.77 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=22.8
Q ss_pred CeEEEEEecCC--hhHH-HHHHHHHhCCCccccee
Q 028446 96 PCGLIGAYGDD--QQGQ-LFVSNMQFSGVDVSRLR 127 (209)
Q Consensus 96 ~~~~ig~vG~D--~~G~-~i~~~L~~~gVd~~~v~ 127 (209)
+..++++++.| ..|. .+.-.|+..|.++.++-
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG 38 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLG 38 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECC
Confidence 45688999988 4554 44556688899887664
No 205
>PRK12313 glycogen branching enzyme; Provisional
Probab=29.25 E-value=59 Score=30.47 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+..+++++.|+++|+.|++|..
T Consensus 218 t~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 218 TPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 457789999999999999999964
No 206
>PRK06545 prephenate dehydrogenase; Validated
Probab=29.17 E-value=2.5e+02 Score=24.21 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=47.0
Q ss_pred EEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEecc
Q 028446 100 IGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFG 179 (209)
Q Consensus 100 ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~~ 179 (209)
|+.||-...|..+...|++.|.+....-+.+....... .. ..+...... .++ .+.++++|+|.++.
T Consensus 3 I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~----a~-------~~~~~~~~~-~~~-~~~~~~aDlVilav- 68 (359)
T PRK06545 3 VLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR----AL-------GFGVIDELA-ADL-QRAAAEADLIVLAV- 68 (359)
T ss_pred EEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH----Hh-------cCCCCcccc-cCH-HHHhcCCCEEEEeC-
Confidence 56778888888888888888865432222211100000 00 001100000 111 23457888888873
Q ss_pred cCCHHHHHHHHHHHHH---CCCeEEEeCCCCC
Q 028446 180 MFNFEVIQAAIRIAKQ---EGLSVSMDLASFE 208 (209)
Q Consensus 180 ~~~~~~~~~l~~~a~~---~g~~v~~D~~~~~ 208 (209)
|......+++..++ ..-.++.|.++.+
T Consensus 69 --P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK 98 (359)
T PRK06545 69 --PVDATAALLAELADLELKPGVIVTDVGSVK 98 (359)
T ss_pred --CHHHHHHHHHHHhhcCCCCCcEEEeCcccc
Confidence 44455555555442 1225777877764
No 207
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=29.16 E-value=91 Score=25.70 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=26.6
Q ss_pred hCCccEEEEecccC--CHHHHHHHHHHHHHCC--CeEEEeCC
Q 028446 168 VKGSKWLVLRFGMF--NFEVIQAAIRIAKQEG--LSVSMDLA 205 (209)
Q Consensus 168 l~~~~~v~~~~~~~--~~~~~~~l~~~a~~~g--~~v~~D~~ 205 (209)
+.+.|++++++.-. ..+.+.++++.+++.| +.+++||.
T Consensus 72 ~~~~d~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv 113 (286)
T TIGR00687 72 LNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPV 113 (286)
T ss_pred cccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCe
Confidence 35889987665321 1357788888888775 77899994
No 208
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=29.15 E-value=97 Score=20.90 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcc
Q 028446 80 GSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDV 123 (209)
Q Consensus 80 G~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~ 123 (209)
|.+...+..|. ..|.++.+++.+|.. .++.|++.||..
T Consensus 50 ~~~~~~~~~l~-~~~v~~vi~~~iG~~-----~~~~l~~~gI~v 87 (103)
T cd00851 50 GAGGKAAEFLA-DEGVDVVIVGGIGPR-----ALNKLRNAGIKV 87 (103)
T ss_pred CCchHHHHHHH-HcCCCEEEeCCCCcC-----HHHHHHHCCCEE
Confidence 44577777887 789999999887754 667788999886
No 209
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.80 E-value=1.4e+02 Score=20.19 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeE
Q 028446 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM 148 (209)
Q Consensus 108 ~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~ 148 (209)
.=+.+.+.+++.|+++..-... .+.+..+.+.||+|.+--
T Consensus 72 ~~~~~~~~~~~~g~~v~~~~~~-~~~g~~~~~~DPdGn~ie 111 (114)
T cd07261 72 AVDALYAEWQAKGVKIIQEPTE-MDFGYTFVALDPDGHRLR 111 (114)
T ss_pred HHHHHHHHHHHCCCeEecCccc-cCCccEEEEECCCCCEEE
Confidence 3467888899999887543222 255667788999998843
No 210
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=28.59 E-value=94 Score=26.32 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=32.1
Q ss_pred CCcccCchhhhCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 158 IQADELIAEDVKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++++++....-++.+++++. ..- .+.+...++++.|+++|+.++.|-.
T Consensus 124 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~ 177 (350)
T TIGR03537 124 LRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDEC 177 (350)
T ss_pred cCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEecc
Confidence 45555543223467888877 221 1456688899999999999998853
No 211
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.48 E-value=83 Score=20.19 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=23.5
Q ss_pred EEEEecCChhH--HHHHHHHHhCCCccccee
Q 028446 99 LIGAYGDDQQG--QLFVSNMQFSGVDVSRLR 127 (209)
Q Consensus 99 ~ig~vG~D~~G--~~i~~~L~~~gVd~~~v~ 127 (209)
+++.+|.|.-| ..+-+.|.+.|+++..+.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~ 31 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVG 31 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecc
Confidence 36789999888 778899999999886553
No 212
>PRK07777 aminotransferase; Validated
Probab=28.45 E-value=3.8e+02 Score=22.93 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=29.9
Q ss_pred CCcccCchhhhCCccEEEEe-cc-c----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 158 IQADELIAEDVKGSKWLVLR-FG-M----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~-~~-~----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
++++++....-++.++|++. .. - .+.+...++++.|+++++.++.|-
T Consensus 147 ~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De 199 (387)
T PRK07777 147 LDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDE 199 (387)
T ss_pred CCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEec
Confidence 44444432222356778776 11 1 145668889999999999999984
No 213
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.39 E-value=1.6e+02 Score=23.69 Aligned_cols=59 Identities=15% Similarity=0.053 Sum_probs=37.7
Q ss_pred CceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCcee
Q 028446 73 PIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQ 135 (209)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~ 135 (209)
..-....|+|+++|+.. ++..+|.-+=.+. ...+.-++.|++.|++--.+...++..|.
T Consensus 75 ~VLEIGtGsGY~aAvla--~l~~~V~siEr~~--~L~~~A~~~L~~lg~~nV~v~~gDG~~G~ 133 (209)
T COG2518 75 RVLEIGTGSGYQAAVLA--RLVGRVVSIERIE--ELAEQARRNLETLGYENVTVRHGDGSKGW 133 (209)
T ss_pred eEEEECCCchHHHHHHH--HHhCeEEEEEEcH--HHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 33445568888888874 5766665555544 46777888899999854344444445553
No 214
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=28.31 E-value=1.6e+02 Score=19.70 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEe
Q 028446 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (209)
Q Consensus 108 ~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~ 150 (209)
.=+.+.+.|++.|+...........-+..+.+.||+|.+--+.
T Consensus 70 ~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 112 (117)
T cd07240 70 DLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELF 112 (117)
T ss_pred HHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEE
Confidence 3456778899999886443321113446677889999985544
No 215
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=28.21 E-value=3.9e+02 Score=22.97 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=26.0
Q ss_pred hCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 168 l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+.++|++++.. |.+...+++..+.++| ..++|.++
T Consensus 66 ~~~~DvVf~al---P~~~s~~~~~~~~~~G-~~VIDlS~ 100 (346)
T TIGR01850 66 AEDADVVFLAL---PHGVSAELAPELLAAG-VKVIDLSA 100 (346)
T ss_pred hcCCCEEEECC---CchHHHHHHHHHHhCC-CEEEeCCh
Confidence 35799999874 5567778888887888 56777765
No 216
>PRK07681 aspartate aminotransferase; Provisional
Probab=28.06 E-value=97 Score=26.83 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=27.2
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+.++|+++ ..- .+.+...++++.|+++++.++.|=
T Consensus 165 ~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De 206 (399)
T PRK07681 165 DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDF 206 (399)
T ss_pred ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEec
Confidence 467888888 221 145678889999999999998874
No 217
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=28.05 E-value=2.9e+02 Score=21.56 Aligned_cols=35 Identities=9% Similarity=-0.069 Sum_probs=23.9
Q ss_pred hhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEE
Q 028446 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 166 ~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~ 202 (209)
+.++++|+|..... +.+....+-+.|++++++++.
T Consensus 107 ~~~~~~D~Vi~~~d--~~~~r~~l~~~~~~~~ip~i~ 141 (202)
T TIGR02356 107 LLINNVDLVLDCTD--NFATRYLINDACVALGTPLIS 141 (202)
T ss_pred HHHhCCCEEEECCC--CHHHHHHHHHHHHHcCCCEEE
Confidence 45788998877632 345555667788888887654
No 218
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=28.04 E-value=79 Score=19.20 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=26.0
Q ss_pred EEEEEecCC-----hhHHHHHHHHHhCCCcccceeecCCCceeEEEEE
Q 028446 98 GLIGAYGDD-----QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (209)
Q Consensus 98 ~~ig~vG~D-----~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~ 140 (209)
.+++.+|.+ .....+.+.|.+.||+...+.........++++-
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~ 49 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVID 49 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEe
Confidence 345555642 2345688889999999876654322445555443
No 219
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=27.97 E-value=90 Score=26.75 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=30.8
Q ss_pred CcccCchhhhCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 159 QADELIAEDVKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 159 ~~~~i~~~~l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
+.+++....-.+.++|++. ..- .+.+...++++.|+++++.++.|=
T Consensus 153 d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De 204 (383)
T TIGR03540 153 DFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDN 204 (383)
T ss_pred CHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEec
Confidence 3344433223467888887 221 146778889999999999998884
No 220
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=27.84 E-value=2.9e+02 Score=25.89 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=58.5
Q ss_pred cCCCeEEEEEecCChhH-HHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCe-eEEecCCcCCCCCcccCchhhhCC
Q 028446 93 FGVPCGLIGAYGDDQQG-QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNR-TMRPCLSNAVKIQADELIAEDVKG 170 (209)
Q Consensus 93 lG~~~~~ig~vG~D~~G-~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~r-t~~~~~ga~~~l~~~~i~~~~l~~ 170 (209)
|--+.=.++.+|-=..| ..+++.|++..|-..---=.....|-..+-+ ++|++ ||+-.||-+. + +.....-..-
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~-p~G~~iTFLDTPGHaA-F--~aMRaRGA~v 224 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTL-PSGKSITFLDTPGHAA-F--SAMRARGANV 224 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEec-CCCCEEEEecCCcHHH-H--HHHHhccCcc
Confidence 44444455666643344 6789999998765431100001233333333 48877 6665666332 1 1111122234
Q ss_pred ccEEEEeccc--CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 171 SKWLVLRFGM--FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 171 ~~~v~~~~~~--~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+|++++--.- .-.....++++.||..++++++-.+
T Consensus 225 tDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAin 261 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAIN 261 (683)
T ss_pred ccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEe
Confidence 6776664111 0123467889999999999988655
No 221
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=27.75 E-value=71 Score=23.96 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=22.6
Q ss_pred ceEecCChHHHHHHHHHhhcCCCeEEEEEe
Q 028446 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (209)
Q Consensus 74 ~~~~~GG~~~N~a~~la~rlG~~~~~ig~v 103 (209)
+.-..||++.|+|..+. ..+-++..++-+
T Consensus 65 ltDl~GGSP~N~A~~l~-~~~~~~~viaGv 93 (143)
T COG2893 65 LTDLFGGSPFNVASRLA-MEGPRVEVIAGV 93 (143)
T ss_pred EEecCCCCHhHHHHHHH-hhCCCceEEecC
Confidence 46678999999999998 677666666543
No 222
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=27.62 E-value=1.2e+02 Score=27.81 Aligned_cols=127 Identities=12% Similarity=0.087 Sum_probs=58.7
Q ss_pred eEecCChHHHHHHHHHhhcCC--CeEEEEEecCCh---hHHHHHHHHHhC--CCcccceeecCC-C--ceeEEEEEcCCC
Q 028446 75 KTIAGGSVTNTIRGLSVGFGV--PCGLIGAYGDDQ---QGQLFVSNMQFS--GVDVSRLRMKRG-P--TGQCVCLVDASG 144 (209)
Q Consensus 75 ~~~~GG~~~N~a~~la~rlG~--~~~~ig~vG~D~---~G~~i~~~L~~~--gVd~~~v~~~~~-~--T~~~~i~~~~~G 144 (209)
..-..|+.+|.++..+ .+.- +.-.+++-|+-. ..+.=.+.+++. |=.+-.+....+ . ++... .-.|
T Consensus 115 vqp~Sg~~An~~v~~a-ll~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~---n~~~ 190 (493)
T PRK13580 115 VQPHSGADANLVAFWA-ILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRP---NISG 190 (493)
T ss_pred ccCCCcHHHHHHHHHH-HhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCccc---chhh
Confidence 3446789999999998 6753 122345566311 222233444443 211111111221 2 22111 1112
Q ss_pred CeeEEecCCcC---CCCCcccCchhhhCCccEEEEe-cccCC-HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 145 NRTMRPCLSNA---VKIQADELIAEDVKGSKWLVLR-FGMFN-FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 145 ~rt~~~~~ga~---~~l~~~~i~~~~l~~~~~v~~~-~~~~~-~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
....+...+.. ..++.+++....-.....|.+. .+..+ .--+.++.+.|++.|+.+++|.+
T Consensus 191 ~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~A 256 (493)
T PRK13580 191 KMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMA 256 (493)
T ss_pred heeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECc
Confidence 22112222221 2345555443232344444444 32212 12256778889999999999975
No 223
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=27.54 E-value=3e+02 Score=21.45 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecC
Q 028446 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR 130 (209)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~ 130 (209)
+++...-+.++...++ ......-.+..-++..+. +||.+ |+..-++ +++..+++.|++.+++...+....
T Consensus 48 tpe~~~W~~e~k~~gi----~v~vvSNn~e~RV~~~~~-~l~v~--fi~~A~K-P~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 48 TPELRAWLAELKEAGI----KVVVVSNNKESRVARAAE-KLGVP--FIYRAKK-PFGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred CHHHHHHHHHHHhcCC----EEEEEeCCCHHHHHhhhh-hcCCc--eeecccC-ccHHHHHHHHHHcCCChhHEEEEc
Confidence 3556666777766542 555666678888888887 88876 5666666 699999999999999987766553
No 224
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=27.48 E-value=3.3e+02 Score=22.02 Aligned_cols=35 Identities=14% Similarity=-0.011 Sum_probs=24.7
Q ss_pred hhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEE
Q 028446 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 166 ~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~ 202 (209)
+.++++|+|..... +.+....+-+.|++.+++++.
T Consensus 110 ~~~~~~DlVvd~~D--~~~~r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 110 ALIAEHDIVVDCTD--NVEVRNQLNRQCFAAKVPLVS 144 (240)
T ss_pred HHhhcCCEEEEcCC--CHHHHHHHHHHHHHcCCCEEE
Confidence 46778998887632 345555666788899988875
No 225
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=27.44 E-value=1.6e+02 Score=21.29 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=29.5
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++..|++.-...|.+....+-..|.++++++++=++
T Consensus 43 ~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~s 78 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGS 78 (116)
T ss_pred CCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 588899986555788888888999999999988554
No 226
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=27.18 E-value=99 Score=26.70 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=30.7
Q ss_pred CCcccCchhhhCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEe
Q 028446 158 IQADELIAEDVKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMD 203 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D 203 (209)
++++.+......+.+++++. ..- .+.+...++++.|+++++.++.|
T Consensus 154 ~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 205 (396)
T PRK09147 154 PDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASD 205 (396)
T ss_pred cCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEee
Confidence 44444433233567888887 221 14677888999999999988877
No 227
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=27.08 E-value=2.8e+02 Score=21.05 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCcccceeecC---CCceeEEEEEcC-CCCeeEEecCCcC-------CCCCcccCc-------hhhhCCc
Q 028446 110 QLFVSNMQFSGVDVSRLRMKR---GPTGQCVCLVDA-SGNRTMRPCLSNA-------VKIQADELI-------AEDVKGS 171 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~---~~T~~~~i~~~~-~G~rt~~~~~ga~-------~~l~~~~i~-------~~~l~~~ 171 (209)
..+.+.|++.|+.+.+....+ +.....+-+++- +|++..+...... ..+..+.+. ...+.++
T Consensus 17 ~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~ 96 (168)
T PF03266_consen 17 KKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLESFEEIGLPALRNALSSS 96 (168)
T ss_dssp HHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCC
T ss_pred HHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHHHHHHHHHHHHhhcCCC
Confidence 567778888888877665322 333334444443 6777666544311 112212111 1233688
Q ss_pred cEEEEe--cccC-CHHHHHHHHHHHHHCCCeEEE
Q 028446 172 KWLVLR--FGMF-NFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 172 ~~v~~~--~~~~-~~~~~~~l~~~a~~~g~~v~~ 202 (209)
+++.++ +.+. ......+.+..+-+.+.+++.
T Consensus 97 ~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~ 130 (168)
T PF03266_consen 97 DLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIG 130 (168)
T ss_dssp HEEEE---STTCCC-CHHHHHHHHHHCTTSEEEE
T ss_pred CEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEE
Confidence 999999 4331 122233444444345555543
No 228
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=27.07 E-value=69 Score=29.46 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
..+...++++.|+++|++|++|...
T Consensus 73 t~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 73 TMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECc
Confidence 4577899999999999999999743
No 229
>PRK05764 aspartate aminotransferase; Provisional
Probab=27.06 E-value=96 Score=26.61 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=25.9
Q ss_pred CCccEEEEe-cc-----cCCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-FG-----MFNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~~-----~~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+.+++++. .. ..+.+...++++.|+++|+.++.|-
T Consensus 163 ~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De 204 (393)
T PRK05764 163 PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDE 204 (393)
T ss_pred ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEec
Confidence 356777765 21 1145668889999999999999994
No 230
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=26.89 E-value=1.2e+02 Score=27.61 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+.+.+++. .+- .+.+...++++.|+++++.|+.|=
T Consensus 280 ~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE 321 (517)
T PRK13355 280 SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDE 321 (517)
T ss_pred cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeh
Confidence 467777776 221 246778899999999999998873
No 231
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=26.87 E-value=1.6e+02 Score=24.49 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=25.6
Q ss_pred CccEEEEe-cc-c---CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 170 GSKWLVLR-FG-M---FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 170 ~~~~v~~~-~~-~---~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
+.++|+++ .. . .+.+.+.++++.|+++|+.+++|-
T Consensus 127 ~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDe 166 (338)
T cd06502 127 PPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDG 166 (338)
T ss_pred cceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeech
Confidence 56788876 11 1 145667888999999999999993
No 232
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=26.77 E-value=4.3e+02 Score=23.55 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=33.8
Q ss_pred CceEecCCh-HHHHHHHHHhhcCCCeEEEEEe------cCChhHHHHHHHHHhCCCccc
Q 028446 73 PIKTIAGGS-VTNTIRGLSVGFGVPCGLIGAY------GDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 73 ~~~~~~GG~-~~N~a~~la~rlG~~~~~ig~v------G~D~~G~~i~~~L~~~gVd~~ 124 (209)
+.....||. +.-.|..++ ++|.++.++..- .+....+.+.+.|++.||++.
T Consensus 185 ~vvVvGgG~~g~E~A~~l~-~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~ 242 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWR-RLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIH 242 (475)
T ss_pred eEEEECCCHHHHHHHHHHH-HcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEE
Confidence 344443443 345566777 789999988642 233567788899999998864
No 233
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=26.75 E-value=1.5e+02 Score=24.46 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=11.8
Q ss_pred EEEecCChhHHHHHHHHHhCCC
Q 028446 100 IGAYGDDQQGQLFVSNMQFSGV 121 (209)
Q Consensus 100 ig~vG~D~~G~~i~~~L~~~gV 121 (209)
|+.||-...|..+...|.+.|.
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~ 24 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGH 24 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCC
Confidence 3444555555555555555554
No 234
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=26.67 E-value=1.9e+02 Score=19.43 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=28.8
Q ss_pred EEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCee
Q 028446 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (209)
Q Consensus 99 ~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt 147 (209)
.+..--+| =+.+.+.|++.|+.+..-.......+..+.+.||+|.+-
T Consensus 64 ~~~f~v~d--i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~ 110 (114)
T cd07247 64 LVYFAVDD--VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVF 110 (114)
T ss_pred EEEEEeCC--HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEE
Confidence 34444455 345667889999876432222123557788889999874
No 235
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=26.44 E-value=1.2e+02 Score=25.01 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=34.2
Q ss_pred CcccCchhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 159 QADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 159 ~~~~i~~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
++-++.+....+||.|.+-..+.+.+.+.++++.|++.|..+.+...+
T Consensus 120 d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~ 167 (254)
T PF00218_consen 120 DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHN 167 (254)
T ss_dssp SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECC
Confidence 343444556679999888843347777899999999999999887654
No 236
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=26.23 E-value=83 Score=28.33 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+..+++++.|+++|++|++|..
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V 102 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVV 102 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 567789999999999999999974
No 237
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=26.18 E-value=1.7e+02 Score=25.29 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=55.9
Q ss_pred ceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCC
Q 028446 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLS 153 (209)
Q Consensus 74 ~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~g 153 (209)
...-.||+|.|++-.+. +.+.+-.-+-.+-.|. +.|++...+.+ +......|.- ....+++.. |
T Consensus 21 ~viGvGg~G~n~v~~l~-~~~~~~~~~iainTD~------~~L~~~~a~~k-i~iG~~~t~G----~GaG~~~~~----G 84 (349)
T TIGR00065 21 KVIGVGGGGNNTVNRML-EEGVEGVEFIAINTDA------QHLKTTKADKK-ILIGKKLTRG----LGAGGNPEI----G 84 (349)
T ss_pred EEEEeCCcHHHHHHHHH-HcCCCceEEEEEECCH------HHHhcCCCCeE-EEcCCCCCCC----CCCCCCHHH----H
Confidence 45678999999999998 7886544445566663 44555443322 1211111110 001112211 1
Q ss_pred cCC-CCCcccCchhhhCCccEEEEecccC--C-HHHHHHHHHHHHHCCCeE
Q 028446 154 NAV-KIQADELIAEDVKGSKWLVLRFGMF--N-FEVIQAAIRIAKQEGLSV 200 (209)
Q Consensus 154 a~~-~l~~~~i~~~~l~~~~~v~~~~~~~--~-~~~~~~l~~~a~~~g~~v 200 (209)
... .-..+.+ .+.++++|.|.+...+. . .....-+.+.+++.++.+
T Consensus 85 ~~~aee~~d~I-r~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~ 134 (349)
T TIGR00065 85 RKAAEESRDEI-RKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALT 134 (349)
T ss_pred HHHHHHHHHHH-HHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCE
Confidence 100 0011122 34678899988874441 1 233445566777777543
No 238
>PRK05942 aspartate aminotransferase; Provisional
Probab=26.18 E-value=97 Score=26.77 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=32.6
Q ss_pred CCcccCchhhhCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 158 IQADELIAEDVKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++++++....-.+.+++++. ..- .+.+...++++.|+++++.|+.|-.
T Consensus 158 ~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~ 211 (394)
T PRK05942 158 IDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLC 211 (394)
T ss_pred cCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEecc
Confidence 44455433233578888887 221 2466788999999999999998853
No 239
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.06 E-value=1.6e+02 Score=17.85 Aligned_cols=43 Identities=2% Similarity=0.090 Sum_probs=26.9
Q ss_pred EEEEEecCC-----hhHHHHHHHHHhCCCcccceeecCCCceeEEEEE
Q 028446 98 GLIGAYGDD-----QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (209)
Q Consensus 98 ~~ig~vG~D-----~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~ 140 (209)
.+++.+|.+ .....+.+.|.+.||+...+.........++++-
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~ 49 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVID 49 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 456667753 2345688889999999876654332444555443
No 240
>PLN00196 alpha-amylase; Provisional
Probab=26.00 E-value=85 Score=28.03 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.+..+++++.|+++|++|++|..
T Consensus 90 t~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 90 NEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 567789999999999999999963
No 241
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=25.98 E-value=49 Score=23.23 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=17.4
Q ss_pred ccccccccCCCceEEEecCce
Q 028446 5 HLIINREASQAALILGLQPAA 25 (209)
Q Consensus 5 ~~~~~~~~~~~~~v~~iG~~~ 25 (209)
+|.|+.|.+.+.||++.| ++
T Consensus 10 ~l~P~d~ep~k~DvV~f~-~~ 29 (99)
T PF15084_consen 10 FLLPDDEEPKKVDVVVFG-NV 29 (99)
T ss_pred EeCCCCCccceeeEEEec-ce
Confidence 378999989999999999 55
No 242
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=25.98 E-value=71 Score=29.50 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+...++++.|+++|++|++|..
T Consensus 79 t~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 79 TLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 456788999999999999999975
No 243
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=25.96 E-value=81 Score=26.40 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCChhH---------HHHHHHHHhCCC
Q 028446 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQG---------QLFVSNMQFSGV 121 (209)
Q Consensus 82 ~~N~a~~la~rlG~~~~~ig~vG~D~~G---------~~i~~~L~~~gV 121 (209)
+.|.+.++| .+|.+|..+||=-+-..- ..+++.+++.|.
T Consensus 17 ~~Nlsaala-~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~ 64 (273)
T PF00142_consen 17 ASNLSAALA-EMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGS 64 (273)
T ss_dssp HHHHHHHHH-HTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCT
T ss_pred hhHHHHHHH-hccceeeEecccCCCccceeccCCccchhHHHHHhhccc
Confidence 689999999 899999999985432111 236777777764
No 244
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=25.91 E-value=87 Score=27.12 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=28.2
Q ss_pred CccEEEEeccc-CC-----HHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 170 GSKWLVLRFGM-FN-----FEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 170 ~~~~v~~~~~~-~~-----~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+.+-|+.+... .+ .+...++++.|++.|.++++|.+|-
T Consensus 29 Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 29 GFKRIFTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred CccceeeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 56667777333 11 2457789999999999999999874
No 245
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=25.87 E-value=2.1e+02 Score=19.70 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCcccceeec-------CCCceeEEEEEcCCCCeeEE
Q 028446 109 GQLFVSNMQFSGVDVSRLRMK-------RGPTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 109 G~~i~~~L~~~gVd~~~v~~~-------~~~T~~~~i~~~~~G~rt~~ 149 (209)
=+.+.+.|++.|+........ +..-+..+.+.||+|.+--+
T Consensus 71 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl 118 (123)
T cd08351 71 FDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEI 118 (123)
T ss_pred HHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEE
Confidence 466778899999986332111 11234667778999988433
No 246
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=25.86 E-value=1.2e+02 Score=23.01 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=35.2
Q ss_pred cCChHHHHHHHHHhhcCCCeEEEEEec-CChhHHHHHHHHHhCCCcccceeec
Q 028446 78 AGGSVTNTIRGLSVGFGVPCGLIGAYG-DDQQGQLFVSNMQFSGVDVSRLRMK 129 (209)
Q Consensus 78 ~GG~~~N~a~~la~rlG~~~~~ig~vG-~D~~G~~i~~~L~~~gVd~~~v~~~ 129 (209)
.||-+.-.+..|+.+-..++.++|.-+ .....+...+.|++.|..+.++..+
T Consensus 9 ~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D 61 (181)
T PF08659_consen 9 LGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCD 61 (181)
T ss_dssp TSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--
T ss_pred ccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccC
Confidence 466677788888733345778888884 4455667889999999988877654
No 247
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=25.69 E-value=81 Score=29.05 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+..+++++.|+++|+.|++|..
T Consensus 158 ~~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 158 GPDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEc
Confidence 456789999999999999999964
No 248
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=25.27 E-value=81 Score=27.27 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=25.8
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+.++|++...-.| ...+.++.+.|+++|+.+++|-.
T Consensus 135 ~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t 174 (364)
T PRK07269 135 EDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNT 174 (364)
T ss_pred cCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 46788887721112 12366788889999999999965
No 249
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=25.15 E-value=1.2e+02 Score=23.56 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=22.8
Q ss_pred CccEEEEec-ccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRF-GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~-~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.++++...+ .+ +.+.+..+-+.++++|+.|+.||-
T Consensus 22 d~~~I~T~Gs~i-~~~~i~~i~~~~~~rgVIIfTDpD 57 (174)
T TIGR00334 22 DVDVIETNGSAL-KDETINLIKKAQKKQGVIILTDPD 57 (174)
T ss_pred CceEEEECCCcc-CHHHHHHHHHHhhcCCEEEEeCCC
Confidence 467777773 33 555555555556678888888884
No 250
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=24.78 E-value=1.5e+02 Score=21.22 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEe
Q 028446 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (209)
Q Consensus 109 G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~ 150 (209)
=+.+.+.|++.|+....-.......+..+.+.||+|.+--+.
T Consensus 76 v~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~ 117 (139)
T PRK04101 76 FDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFH 117 (139)
T ss_pred HHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEE
Confidence 456778899999986321111123557777889999985544
No 251
>PRK08068 transaminase; Reviewed
Probab=24.57 E-value=1.2e+02 Score=26.04 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=26.8
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+.++|++. ..- .+.+...++++.|+++++.++.|=
T Consensus 166 ~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~De 207 (389)
T PRK08068 166 EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDF 207 (389)
T ss_pred ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeh
Confidence 467888888 321 146777888899999999998874
No 252
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.51 E-value=1.5e+02 Score=19.71 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhCCCcccceeecCCCceeEEEEEc
Q 028446 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141 (209)
Q Consensus 108 ~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~ 141 (209)
+++.+++.|+++||..+++.. +--..++++-+
T Consensus 17 F~rk~L~I~E~~~is~Eh~PS--GID~~Siii~~ 48 (76)
T cd04911 17 FGRKLLSILEDNGISYEHMPS--GIDDISIIIRD 48 (76)
T ss_pred HHHHHHHHHHHcCCCEeeecC--CCccEEEEEEc
Confidence 788999999999999988764 33335555543
No 253
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=24.41 E-value=1.2e+02 Score=25.61 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHH
Q 028446 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNM 116 (209)
Q Consensus 82 ~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L 116 (209)
.-+..-.|. +.|.+..|+..+|-|..|+.+...+
T Consensus 20 ~~~~~~~~~-~~~~~a~f~~~~gpd~~g~~~~r~~ 53 (296)
T PRK15394 20 VPRLLEILS-KHGIQASFFFSVGPDNMGRHLWRLL 53 (296)
T ss_pred HHHHHHHHH-HcCCCEEEEeccCCCchhHHHHHHh
Confidence 467777787 8999999999999999997776555
No 254
>PRK09505 malS alpha-amylase; Reviewed
Probab=24.38 E-value=82 Score=30.02 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+..+.+++.|+++|++|++|..
T Consensus 290 t~~dfk~Lv~~aH~~Gi~VilD~V 313 (683)
T PRK09505 290 TEADLRTLVDEAHQRGIRILFDVV 313 (683)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 356789999999999999999974
No 255
>PRK06108 aspartate aminotransferase; Provisional
Probab=24.28 E-value=4.4e+02 Score=22.29 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=25.6
Q ss_pred CccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 170 GSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 170 ~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
+.++++++ ..- .+.+...++++.|+++|+.++.|-
T Consensus 158 ~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De 198 (382)
T PRK06108 158 RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADE 198 (382)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeh
Confidence 56777776 211 145677889999999999999983
No 256
>PRK13018 cell division protein FtsZ; Provisional
Probab=24.18 E-value=1.8e+02 Score=25.53 Aligned_cols=111 Identities=23% Similarity=0.285 Sum_probs=57.7
Q ss_pred ceEecCChHHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecCC
Q 028446 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLS 153 (209)
Q Consensus 74 ~~~~~GG~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~g 153 (209)
...-.||+|.|+.-.+. +.|..-.=+-.+-.|. +.|.+...+.+ +...+..|.- ....+++..- . .
T Consensus 32 ~ViGvGGaG~N~v~~m~-~~~~~~v~~iaiNTD~------q~L~~~~a~~k-i~iG~~~t~G----~GaG~dp~~G-~-~ 97 (378)
T PRK13018 32 VVVGCGGAGNNTINRLY-EIGIEGAETIAINTDA------QHLAMIKADKK-ILIGKSLTRG----LGAGGDPEVG-R-K 97 (378)
T ss_pred EEEEeCCcHHHHHHHHH-HcCCCCceEEEEECCH------HHHhcCCCCcE-EecCCccCCC----CCCCCChHHH-H-H
Confidence 45678999999999998 7886533334566774 55655444432 2222111100 0011222210 0 0
Q ss_pred cCCCCCcccCchhhhCCccEEEEecccC---CHHHHHHHHHHHHHCCCeE
Q 028446 154 NAVKIQADELIAEDVKGSKWLVLRFGMF---NFEVIQAAIRIAKQEGLSV 200 (209)
Q Consensus 154 a~~~l~~~~i~~~~l~~~~~v~~~~~~~---~~~~~~~l~~~a~~~g~~v 200 (209)
+. .-..+++ .+.++++|.|++...+. -......+++.+++.+..+
T Consensus 98 aa-ee~~d~I-~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~lt 145 (378)
T PRK13018 98 AA-EESRDEI-KEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALV 145 (378)
T ss_pred HH-HHHHHHH-HHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCe
Confidence 00 0011222 35678999988884441 1344556777788877653
No 257
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.17 E-value=4.3e+02 Score=22.15 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHhhcCCCeEEEEEecCChhHHH---HHHHHHhCCCcccceeecCCCceeEEEEEc---CCCCeeEEecCC
Q 028446 80 GSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQL---FVSNMQFSGVDVSRLRMKRGPTGQCVCLVD---ASGNRTMRPCLS 153 (209)
Q Consensus 80 G~~~N~a~~la~rlG~~~~~ig~vG~D~~G~~---i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~---~~G~rt~~~~~g 153 (209)
|.+.-+|.+++ ...-+-..|+..||..+... =+....+.++++.++...++..+.+-.... +.|.++-....+
T Consensus 63 G~alp~AiGak-lA~pd~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g 141 (280)
T PRK11869 63 GRAIPAATAVK-ATNPELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWG 141 (280)
T ss_pred ccHHHHHHHHH-HHCCCCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCC
Confidence 45777777765 33334566788888654322 223446678998887776543232111111 112121111111
Q ss_pred cCCCCCcccCc-hhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 154 NAVKIQADELI-AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 154 a~~~l~~~~i~-~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
. ...+-++. ...--.+.++-..+.- ..+.+.+++++|.+++-+.++|.-.
T Consensus 142 ~--~~~~~D~~~lA~a~G~~~va~~~~~-~~~~l~~~i~~Al~~~Gp~lIeV~~ 192 (280)
T PRK11869 142 V--FEEPFNPIALAIALDASFVARTFSG-DIEETKEILKEAIKHKGLAIVDIFQ 192 (280)
T ss_pred c--cCCCCCHHHHHHHCCCCEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 1 11111221 1122356655544221 3456778888888887788877643
No 258
>PRK05402 glycogen branching enzyme; Provisional
Probab=24.14 E-value=79 Score=30.27 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 183 FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 183 ~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+..+++++.|+++|+.|++|..
T Consensus 314 ~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 314 PDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 46789999999999999999964
No 259
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=24.07 E-value=2.4e+02 Score=19.19 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCcccceeecCCCce-eEEEEEcCCCCeeE
Q 028446 109 GQLFVSNMQFSGVDVSRLRMKRGPTG-QCVCLVDASGNRTM 148 (209)
Q Consensus 109 G~~i~~~L~~~gVd~~~v~~~~~~T~-~~~i~~~~~G~rt~ 148 (209)
=+.+.+.|++.|+.+..-.. +.+-+ ..+.+.||+|..--
T Consensus 80 vd~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~ie 119 (122)
T cd07235 80 VDALYAELVGAGYPGHKEPW-DAPWGQRYAIVKDPDGNLVD 119 (122)
T ss_pred HHHHHHHHHHCCCCcCCCCc-cCCCCCEEEEEECCCCCEEE
Confidence 56777889999987643222 12333 45567899998743
No 260
>PRK04296 thymidine kinase; Provisional
Probab=23.98 E-value=2e+02 Score=22.19 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=23.3
Q ss_pred CccEEEEe-cccCCHHHHHHHHHHHHHCCCeEEE
Q 028446 170 GSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 170 ~~~~v~~~-~~~~~~~~~~~l~~~a~~~g~~v~~ 202 (209)
+.++|.++ ..+.+.+.+.++++.+++.|+.|++
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~ 111 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVIC 111 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 56788888 3222555577788888888887776
No 261
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=23.97 E-value=4e+02 Score=21.75 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=25.3
Q ss_pred CccEEEEec--c----cCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRF--G----MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~--~----~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.++|++.. + +.|.+.+.++++.|+++|+.+++|-.
T Consensus 132 ~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a 173 (350)
T cd00609 132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEA 173 (350)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecc
Confidence 566677652 1 12456677888899999999999974
No 262
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=23.93 E-value=1.6e+02 Score=20.17 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=23.9
Q ss_pred hhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEE
Q 028446 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 167 ~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~ 202 (209)
.+.++++|+.... .++.-..+.+.|+++|+++-.
T Consensus 57 ~l~~~~lV~~at~--d~~~n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 57 DLDGADLVFAATD--DPELNEAIYADARARGILVNV 90 (103)
T ss_dssp GCTTESEEEE-SS---HHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhheEEEecCC--CHHHHHHHHHHHhhCCEEEEE
Confidence 4667888888742 356667788899999988754
No 263
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=23.78 E-value=1.5e+02 Score=24.14 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=24.9
Q ss_pred hhhCCccEEEEecccCCHHHHHHHHHHHHH--CCCeEEEeCCCCC
Q 028446 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQ--EGLSVSMDLASFE 208 (209)
Q Consensus 166 ~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~--~g~~v~~D~~~~~ 208 (209)
+.++++|+|.++. |.+.+..+++.... ..-.++.|.++.|
T Consensus 41 ~~~~~~Dlvvlav---P~~~~~~~l~~~~~~~~~~~iv~Dv~SvK 82 (258)
T PF02153_consen 41 EAVEDADLVVLAV---PVSAIEDVLEEIAPYLKPGAIVTDVGSVK 82 (258)
T ss_dssp HHGGCCSEEEE-S----HHHHHHHHHHHHCGS-TTSEEEE--S-C
T ss_pred hHhcCCCEEEEcC---CHHHHHHHHHHhhhhcCCCcEEEEeCCCC
Confidence 4678899999984 66667777776554 2237899998875
No 264
>PLN02361 alpha-amylase
Probab=23.44 E-value=1e+02 Score=27.32 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+..+++++.|+++|++|++|..
T Consensus 74 t~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 74 SEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEc
Confidence 466789999999999999999973
No 265
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.38 E-value=2.1e+02 Score=20.30 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=19.1
Q ss_pred EEEEecCC--hhH-HHHHHHHHhCCCccccee
Q 028446 99 LIGAYGDD--QQG-QLFVSNMQFSGVDVSRLR 127 (209)
Q Consensus 99 ~ig~vG~D--~~G-~~i~~~L~~~gVd~~~v~ 127 (209)
++++++.| ..| ..+...|+..|.++.++-
T Consensus 3 v~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG 34 (122)
T cd02071 3 LVAKPGLDGHDRGAKVIARALRDAGFEVIYTG 34 (122)
T ss_pred EEEecCCChhHHHHHHHHHHHHHCCCEEEECC
Confidence 56777776 344 455566788888876654
No 266
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=23.25 E-value=2.4e+02 Score=23.23 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=54.6
Q ss_pred EEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeE-----------EecCCcCCCCCcccCchhh
Q 028446 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM-----------RPCLSNAVKIQADELIAED 167 (209)
Q Consensus 99 ~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~-----------~~~~ga~~~l~~~~i~~~~ 167 (209)
.+|-||=...|+++.+.++..-++.+.+.+.+...-.+--+...-+.|.. +.-.-|..+- ..++-.+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~A-v~e~~~~~ 80 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEA-VREYVPKI 80 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHH-HHHHhHHH
Confidence 36778888999999998887655555544433110000000000011111 0000000000 00111233
Q ss_pred h-CCccEEEEe-cccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 168 V-KGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 168 l-~~~~~v~~~-~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+ ...|++.++ +.+..++...++...|+..|.++.+=.+
T Consensus 81 L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSG 120 (255)
T COG1712 81 LKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSG 120 (255)
T ss_pred HhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCc
Confidence 4 458999999 7664566677777788888888876443
No 267
>PRK09265 aminotransferase AlaT; Validated
Probab=23.23 E-value=1.5e+02 Score=25.77 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=25.7
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEe
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMD 203 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D 203 (209)
.+.+.|++. ..- .+.+...++++.|+++|+.++.|
T Consensus 167 ~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D 207 (404)
T PRK09265 167 PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFAD 207 (404)
T ss_pred ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 457777776 221 24566888999999999999988
No 268
>PRK09330 cell division protein FtsZ; Validated
Probab=23.19 E-value=2.3e+02 Score=25.03 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=56.3
Q ss_pred ceEecCChHHHHHHHHHhhcCCC-eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEEecC
Q 028446 74 IKTIAGGSVTNTIRGLSVGFGVP-CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL 152 (209)
Q Consensus 74 ~~~~~GG~~~N~a~~la~rlG~~-~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~~~~ 152 (209)
...-.||+|.|+.-.+. +.|.+ +.| -++-.|. +.|++...+.+ ++..+.-|.= ....+++. .
T Consensus 17 kViGvGG~G~Nav~~m~-~~~~~~v~f-ia~NTD~------q~L~~~~a~~k-i~lG~~~t~G----lGaG~~pe----~ 79 (384)
T PRK09330 17 KVIGVGGGGGNAVNRMI-EEGIQGVEF-IAANTDA------QALLKSKAPVK-IQLGEKLTRG----LGAGANPE----V 79 (384)
T ss_pred EEEEECCcHHHHHHHHH-HcCCCCceE-EEEeCcH------HHHhcCCCCeE-EEcCCccccc----CCCCCCHH----H
Confidence 45778999999999998 78854 444 4455662 34555544432 2222111100 00111111 0
Q ss_pred CcCC-CCCcccCchhhhCCccEEEEecccC---CHHHHHHHHHHHHHCCCeE
Q 028446 153 SNAV-KIQADELIAEDVKGSKWLVLRFGMF---NFEVIQAAIRIAKQEGLSV 200 (209)
Q Consensus 153 ga~~-~l~~~~i~~~~l~~~~~v~~~~~~~---~~~~~~~l~~~a~~~g~~v 200 (209)
|... .-+.+++ .+.++.+|+|++...+. -.....-+.+.||+.|+.+
T Consensus 80 G~~aaee~~e~I-~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~lt 130 (384)
T PRK09330 80 GRKAAEESREEI-REALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILT 130 (384)
T ss_pred HHHHHHHHHHHH-HHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcE
Confidence 1100 0011122 35678999998884441 1233445667788888654
No 269
>PRK01076 L-rhamnose isomerase; Provisional
Probab=23.18 E-value=79 Score=28.02 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 184 EVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 184 ~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
+-...+.+.|+++|+.+=|+|+.+
T Consensus 113 ~~f~~w~~~Ak~~GlglDfNpn~F 136 (419)
T PRK01076 113 EHFKNWVEWAKENGLGLDFNPTCF 136 (419)
T ss_pred ccHHHHHHHHHHcCCCcCcCcccC
Confidence 557789999999999887777654
No 270
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=23.17 E-value=1.1e+02 Score=26.30 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=30.4
Q ss_pred CCcccCchhhhCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 158 IQADELIAEDVKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
++.+++.....++.+++++. ..- .+.+...++++.|+++++.|+.|=
T Consensus 153 ~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De 205 (393)
T TIGR03538 153 PDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDE 205 (393)
T ss_pred CCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECc
Confidence 34444433223467888887 221 135678889999999999888774
No 271
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=23.03 E-value=2.3e+02 Score=19.37 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEE
Q 028446 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~ 149 (209)
+.+.+.|++.|+....-......-...+.+.||+|.+-.+
T Consensus 80 d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l 119 (122)
T cd08355 80 DAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTF 119 (122)
T ss_pred HHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEE
Confidence 7788888888887642221111223556688999988544
No 272
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=23.00 E-value=4.8e+02 Score=22.89 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=18.2
Q ss_pred CccEEEEec-cc-CCHHHHHHHHHHHHHCCCeEEE
Q 028446 170 GSKWLVLRF-GM-FNFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 170 ~~~~v~~~~-~~-~~~~~~~~l~~~a~~~g~~v~~ 202 (209)
+.+.|+++. +. ....-+.++.+.|+++|+.+++
T Consensus 204 ~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 204 DTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIV 238 (447)
T ss_pred CeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEE
Confidence 455666652 11 0112255667777888877766
No 273
>PRK05756 pyridoxamine kinase; Validated
Probab=22.94 E-value=1.5e+02 Score=24.44 Aligned_cols=38 Identities=16% Similarity=-0.008 Sum_probs=25.7
Q ss_pred hCCccEEEEecccC--CHHHHHHHHHHHHHCC--CeEEEeCC
Q 028446 168 VKGSKWLVLRFGMF--NFEVIQAAIRIAKQEG--LSVSMDLA 205 (209)
Q Consensus 168 l~~~~~v~~~~~~~--~~~~~~~l~~~a~~~g--~~v~~D~~ 205 (209)
+.+.+++..++.-. ..+.+.++++.+++.+ +.+++||.
T Consensus 72 l~~~~~v~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv 113 (286)
T PRK05756 72 LGECDAVLSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPV 113 (286)
T ss_pred cccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCc
Confidence 34788776665321 1466778888887766 56899986
No 274
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=22.83 E-value=94 Score=29.08 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
..+..+++++.|+++|+.|++|..
T Consensus 204 t~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 204 TPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEec
Confidence 356789999999999999999974
No 275
>PRK11478 putative lyase; Provisional
Probab=22.76 E-value=2.6e+02 Score=19.23 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCee
Q 028446 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt 147 (209)
+...+.|++.|+........+......+.+.||+|..-
T Consensus 87 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~i 124 (129)
T PRK11478 87 DAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPL 124 (129)
T ss_pred HHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEE
Confidence 45678899999986433222212223344568888874
No 276
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=22.69 E-value=79 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHH
Q 028446 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQ 117 (209)
Q Consensus 82 ~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~ 117 (209)
+.|.|++|+ ++|.+|.++ --|..|..+-..+.
T Consensus 18 a~~lA~aLa-~~G~kVg~l---D~Di~q~S~~r~l~ 49 (261)
T PF09140_consen 18 AVNLAVALA-RMGKKVGLL---DLDIRQPSLPRYLE 49 (261)
T ss_dssp HHHHHHHHH-CTT--EEEE---E--TTT-HHHHHHH
T ss_pred HHHHHHHHH-HCCCeEEEE---ecCCCCCCHHHHHh
Confidence 789999999 899998665 45666655555553
No 277
>PRK12616 pyridoxal kinase; Reviewed
Probab=22.62 E-value=1.6e+02 Score=24.08 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=27.6
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHCC-CeEEEeCCC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~g-~~v~~D~~~ 206 (209)
+.+.+.+++.- +.+.+..+.+.+++.+ .++++||..
T Consensus 74 ~~~aikiG~l~-s~~~i~~i~~~l~~~~~~~vV~DPV~ 110 (270)
T PRK12616 74 GVDAMKTGMLP-TVDIIELAADTIKEKQLKNVVIDPVM 110 (270)
T ss_pred CCCEEEECCCC-CHHHHHHHHHHHHhcCCCCEEEccce
Confidence 57889888642 5677788888888876 469999975
No 278
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.57 E-value=2.5e+02 Score=18.89 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEE
Q 028446 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~ 149 (209)
+.+.+.+.+.|+....... ....+..+.+.||+|.+--+
T Consensus 81 ~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~DP~G~~ie~ 119 (122)
T cd08354 81 AEWEAHLEAKGVAIESEVQ-WPRGGRSLYFRDPDGNLLEL 119 (122)
T ss_pred HHHHHHHHhcCCceecccc-CCCCeeEEEEECCCCCEEEE
Confidence 4567888889987643322 12456677888999988433
No 279
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.47 E-value=2.2e+02 Score=25.35 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=34.8
Q ss_pred CceEecCC-hHHHHHHHHHhhcCCCeEEEEEec------CChhHHHHHHHHHhCCCccc
Q 028446 73 PIKTIAGG-SVTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 73 ~~~~~~GG-~~~N~a~~la~rlG~~~~~ig~vG------~D~~G~~i~~~L~~~gVd~~ 124 (209)
+....-|| .+.-.|..++ ++|.++.++-.-. +....+.+.+.|++.||++.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~-~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLK-NYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred eEEEECCcHHHHHHHHHHH-HcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEE
Confidence 33333333 2556778887 8999998875421 22467888999999999864
No 280
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=22.34 E-value=1.3e+02 Score=24.22 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=22.1
Q ss_pred CccEEEEe-cccCCHHHHHHHHHHHH-HCCCeEEEeCCC
Q 028446 170 GSKWLVLR-FGMFNFEVIQAAIRIAK-QEGLSVSMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~-~~~~~~~~~~~l~~~a~-~~g~~v~~D~~~ 206 (209)
..++..+. +.+.+.+....+++.++ +++++|+|||+.
T Consensus 68 ~~~~~~i~~G~l~~~~~~~~~~~~~~~~~~~~vv~DPv~ 106 (253)
T PRK12413 68 DVPFSAIKIGLLPNVEIAEQALDFIKGHPGIPVVLDPVL 106 (253)
T ss_pred CCCCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCce
Confidence 34444444 33323455566666665 478999999864
No 281
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=22.24 E-value=85 Score=27.78 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCcccceeecCCCceeEE---EEEcCCCCeeEEecCCcCCCCCc--ccCc--hhhhCCccE--EEEeccc
Q 028446 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCV---CLVDASGNRTMRPCLSNAVKIQA--DELI--AEDVKGSKW--LVLRFGM 180 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~~~T~~~~---i~~~~~G~rt~~~~~ga~~~l~~--~~i~--~~~l~~~~~--v~~~~~~ 180 (209)
+.+++.|++..|.+...+-++ -+|+-. .+ ..|-|....|+|......+ +|+. .+++..+.- +|+.|.-
T Consensus 20 e~a~~~L~~~~Is~hcWqgdd-v~gf~~~~~~l--tGGir~tgn~PG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~ 96 (414)
T TIGR01748 20 EEALRQLDRLPISMHCWQGDD-VSGFENPEGEL--TGGIQATGNYPGKARTPSELRADLEKAMSLIPGKHRLNLHAIYLE 96 (414)
T ss_pred HHHHHHHhcCceeeccCCCCc-ccccccCCCCC--CCceeeecCCCCCCCCHHHHHHHHHHHHHhcCCCCceeeeccccc
Confidence 445566666665554444211 222210 01 2577766778887544322 1222 234433332 4444411
Q ss_pred -C--------CHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 181 -F--------NFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 181 -~--------~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
. .++-...+++.|+++|+.+=|+|+-+
T Consensus 97 ~d~~vdrd~~~p~hf~~w~~~Ak~~glglDfNpn~F 132 (414)
T TIGR01748 97 TDEPVSRDEIKPEHFKNWVEWAKANGLGLDFNPTCF 132 (414)
T ss_pred CCCcccccccCcccHHHHHHHHHHcCCCcCcCcccC
Confidence 1 13557789999999999887777654
No 282
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.21 E-value=2.4e+02 Score=18.62 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCeeEE
Q 028446 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt~~ 149 (209)
+.+.+.|++.|+...... .+...+..+.+.||+|.+-.+
T Consensus 79 ~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~DP~G~~ie~ 117 (119)
T cd07263 79 DATYEELKARGVEFSEEP-REMPYGTVAVFRDPDGNLFVL 117 (119)
T ss_pred HHHHHHHHhCCCEEeecc-ccCCCceEEEEECCCCCEEEE
Confidence 457778888897654333 123456788888999988543
No 283
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=22.17 E-value=2.5e+02 Score=21.97 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=24.1
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHCCCeE--EEeCCC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSV--SMDLAS 206 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v--~~D~~~ 206 (209)
++|++.+.+.. ..+...++++.+++.|+++ +++++.
T Consensus 80 gad~vtvh~e~-g~~~l~~~i~~~~~~g~~~~v~~~~~~ 117 (215)
T PRK13813 80 GAWGIIVHGFT-GRDSLKAVVEAAAESGGKVFVVVEMSH 117 (215)
T ss_pred CCCEEEEcCcC-CHHHHHHHHHHHHhcCCeEEEEEeCCC
Confidence 57887777543 3455667778888888777 556653
No 284
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.94 E-value=4.7e+02 Score=21.79 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.6
Q ss_pred EEEecCChhHHHHHHHHHhCCCccc
Q 028446 100 IGAYGDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 100 ig~vG~D~~G~~i~~~L~~~gVd~~ 124 (209)
|+.+|-...|..+-..|.+.|.++.
T Consensus 7 I~iiG~G~~G~~lA~~l~~~G~~V~ 31 (308)
T PRK14619 7 IAILGAGAWGSTLAGLASANGHRVR 31 (308)
T ss_pred EEEECccHHHHHHHHHHHHCCCEEE
Confidence 6777888888888888888876553
No 285
>PRK05839 hypothetical protein; Provisional
Probab=21.91 E-value=2e+02 Score=24.65 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=27.2
Q ss_pred hCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 168 VKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 168 l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
+++.++|++. ..- .+.+...++++.|+++|+.++.|=
T Consensus 153 ~~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE 195 (374)
T PRK05839 153 LQEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDE 195 (374)
T ss_pred hccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEecc
Confidence 3568888887 211 146778889999999999998873
No 286
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=21.91 E-value=3e+02 Score=19.56 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.+..++++.....+ .....++.+.++++|+.+++|..
T Consensus 91 ~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a 130 (170)
T cd01494 91 PNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAA 130 (170)
T ss_pred CceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecc
Confidence 35666776621111 11125677788899999999964
No 287
>PRK12414 putative aminotransferase; Provisional
Probab=21.81 E-value=1.3e+02 Score=25.99 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=29.7
Q ss_pred CCcccCchhhhCCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 158 IQADELIAEDVKGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
++++.+....-.+.++|++. ..- .+.+...++++.|+++++.++.|-
T Consensus 150 ~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De 202 (384)
T PRK12414 150 VNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDE 202 (384)
T ss_pred cCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhh
Confidence 44444432222467788886 211 135667888999999999998774
No 288
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=21.77 E-value=1.1e+02 Score=21.05 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=25.2
Q ss_pred eEEEEEecCChhH--HHHHHHHHhCCCccccee
Q 028446 97 CGLIGAYGDDQQG--QLFVSNMQFSGVDVSRLR 127 (209)
Q Consensus 97 ~~~ig~vG~D~~G--~~i~~~L~~~gVd~~~v~ 127 (209)
-++++.+|.|..| .-+-..|.+.|+++..+.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldis 35 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS 35 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH
Confidence 3688999999888 677888999999976543
No 289
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=21.74 E-value=2.8e+02 Score=19.14 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCcccceeecC------C-----CceeEEEEEcCCCCeeEEecCCcCCCCCcccCchhhhCCccEEEEec
Q 028446 110 QLFVSNMQFSGVDVSRLRMKR------G-----PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~------~-----~T~~~~i~~~~~G~rt~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~~ 178 (209)
+.+++.|++.|+|.-.+.... + ..+.++++++++|. .++...+. ............+++...-
T Consensus 3 ~rl~~~m~~~gid~lll~~~~ni~YltG~~~~~~~~~~~l~i~~~~~-~l~~~~~~-----~~~~~~~~~~~~~v~~~~~ 76 (132)
T PF01321_consen 3 ERLRAAMAEAGIDALLLTSPENIRYLTGFRWQPGERPVLLVITADGA-VLFVPKGE-----YERAAEESAPDDEVVEYED 76 (132)
T ss_dssp HHHHHHHHHTT-SEEEEESHHHHHHHHS--ST-TSSEEEEEEESSSE-EEEEEGGG-----HHHHHHHHTTSSEEEEEST
T ss_pred HHHHHHHHHCCCCEEEEcChhhceEecCCCcCCCcceEEEEecccCc-EEEecccc-----HHHHHHhhcCCceEEEEec
Confidence 357788888888864333222 1 12233443666776 55543221 1111111112334433321
Q ss_pred ccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 179 GMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 179 ~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+.+.+.++++..-..+.+|.+|.+.
T Consensus 77 ---~~~~~~~~l~~~~~~~~~igve~~~ 101 (132)
T PF01321_consen 77 ---PYEAIAEALKKLGPEGKRIGVEPDS 101 (132)
T ss_dssp ---HHHHHHHHHHHHTTTTSEEEEETTT
T ss_pred ---ccchHHHHHHHhCCCCCEEEEcCCc
Confidence 2455566666554445778888764
No 290
>PRK08912 hypothetical protein; Provisional
Probab=21.74 E-value=1.3e+02 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=26.0
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+.+++++. ..- .+.+...++++.|+++++.++.|-
T Consensus 158 ~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De 199 (387)
T PRK08912 158 PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDE 199 (387)
T ss_pred ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhh
Confidence 456778777 211 145667888999999999998884
No 291
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=21.65 E-value=4.3e+02 Score=22.09 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=50.1
Q ss_pred EEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCee-EEecCCcCCCCCcccCchhhhCCccEEEEe
Q 028446 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT-MRPCLSNAVKIQADELIAEDVKGSKWLVLR 177 (209)
Q Consensus 99 ~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt-~~~~~ga~~~l~~~~i~~~~l~~~~~v~~~ 177 (209)
-++.+|-...|..+...|++.|.....+-++.. .... .-...|....... +........+|+|.++
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~------------~~~~~~a~~lgv~d~~~~-~~~~~~~~~aD~Viva 71 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS------------AATLKAALELGVIDELTV-AGLAEAAAEADLVIVA 71 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCc------------HHHHHHHhhcCccccccc-chhhhhcccCCEEEEe
Confidence 356677778999999999999876543332211 1000 0001121111111 1112345678999888
Q ss_pred cccCCHHHHHHHHHHHHH--CCCeEEEeCCCCC
Q 028446 178 FGMFNFEVIQAAIRIAKQ--EGLSVSMDLASFE 208 (209)
Q Consensus 178 ~~~~~~~~~~~l~~~a~~--~g~~v~~D~~~~~ 208 (209)
- |...+..++++... .-=.++.|.++.|
T Consensus 72 v---Pi~~~~~~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 72 V---PIEATEEVLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred c---cHHHHHHHHHHhcccCCCCCEEEeccccc
Confidence 3 55556666665542 1124677887765
No 292
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.60 E-value=2.6e+02 Score=18.72 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCee
Q 028446 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt 147 (209)
+...+.|++.|+...............+.+.||+|.+-
T Consensus 84 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~i 121 (125)
T cd08352 84 EAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPL 121 (125)
T ss_pred HHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEE
Confidence 34778899999987543322222333455678888763
No 293
>PRK10565 putative carbohydrate kinase; Provisional
Probab=21.58 E-value=1.6e+02 Score=26.94 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=26.6
Q ss_pred hCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 168 l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++.+.+...+...+....+++.+++.++++++|+.
T Consensus 318 ~~~~~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDAd 355 (508)
T PRK10565 318 LEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDAD 355 (508)
T ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEch
Confidence 46788999983332333345666778888999999985
No 294
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=21.55 E-value=71 Score=27.97 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHCCCeEEEeCCC
Q 028446 185 VIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 185 ~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
...++.+.|++++++++.|.++
T Consensus 158 ~~~el~~la~~~~lp~i~Dlgs 179 (367)
T PF03841_consen 158 SLEELAELAKEHGLPVIVDLGS 179 (367)
T ss_dssp ---HHHHHHHHHT--EEEE-TT
T ss_pred cHHHHHHHHhhcCCcEEEECCC
Confidence 4678899999999999999987
No 295
>PRK14727 putative mercuric reductase; Provisional
Probab=21.54 E-value=2.2e+02 Score=25.45 Aligned_cols=50 Identities=12% Similarity=0.298 Sum_probs=33.5
Q ss_pred CceEecCCh-HHHHHHHHHhhcCCCeEEEEEec------CChhHHHHHHHHHhCCCccc
Q 028446 73 PIKTIAGGS-VTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 73 ~~~~~~GG~-~~N~a~~la~rlG~~~~~ig~vG------~D~~G~~i~~~L~~~gVd~~ 124 (209)
+....-||. +.-.|..++ ++|.+|.++.. . +...++.+.+.|++.||++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~-~~G~~Vtlv~~-~~~l~~~d~~~~~~l~~~L~~~GV~i~ 246 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYA-RLGSRVTILAR-STLLFREDPLLGETLTACFEKEGIEVL 246 (479)
T ss_pred eEEEECCCHHHHHHHHHHH-HcCCEEEEEEc-CCCCCcchHHHHHHHHHHHHhCCCEEE
Confidence 333333443 344556677 79999999865 2 22467888999999999864
No 296
>PRK06348 aspartate aminotransferase; Provisional
Probab=21.52 E-value=1.6e+02 Score=25.32 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=26.4
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+.+.|++. ..- .+.+...++++.|+++++.++.|=
T Consensus 161 ~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De 202 (384)
T PRK06348 161 SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDE 202 (384)
T ss_pred cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEec
Confidence 467888876 211 145678889999999999998884
No 297
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=21.47 E-value=1e+02 Score=24.77 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCC
Q 028446 184 EVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 184 ~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+.+.++++.|+++|+.|++|+..
T Consensus 62 ~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEecc
Confidence 56788999999999999999864
No 298
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=21.47 E-value=1.5e+02 Score=25.46 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=26.4
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEe
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMD 203 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D 203 (209)
.+++++++. ..- .+.+...++++.|+++++.|+.|
T Consensus 164 ~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 204 (388)
T PRK07366 164 AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHD 204 (388)
T ss_pred ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEe
Confidence 467888887 221 14677888999999999998877
No 299
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=21.46 E-value=1.8e+02 Score=24.69 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=28.9
Q ss_pred CCcccCchhhhCCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 158 IQADELIAEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++++++....-++.++|+++..-.+ ...+.++.+.|+++|+.+++|..
T Consensus 127 ~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a 177 (373)
T cd06453 127 LDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGA 177 (373)
T ss_pred cCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhh
Confidence 4455554323346778887621101 12246788888899999999963
No 300
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=21.46 E-value=1.9e+02 Score=23.43 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCccEEEEeccc-CCHHHHHHHHHHHHHCCCeEEEeCCCCC
Q 028446 169 KGSKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (209)
Q Consensus 169 ~~~~~v~~~~~~-~~~~~~~~l~~~a~~~g~~v~~D~~~~~ 208 (209)
...|.+.++++. ...+.+.++++..|+..+++++-|++..
T Consensus 26 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~ 66 (223)
T TIGR01768 26 SGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPT 66 (223)
T ss_pred cCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCcc
Confidence 468999999654 2467788888989999999999998653
No 301
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=21.35 E-value=2.3e+02 Score=18.04 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=30.1
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCe
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNR 146 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~r 146 (209)
...++..-+|. +.+.+.|++.|+...............+.+.||+|.+
T Consensus 62 ~~~~~~~v~~~--~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~ 109 (112)
T cd06587 62 GVHLAFEVDDV--DAAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNL 109 (112)
T ss_pred eeEEEEECCCH--HHHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcE
Confidence 34444444553 6788899999987654332223445667777888765
No 302
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=21.35 E-value=2.4e+02 Score=23.75 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=24.4
Q ss_pred CCccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++.++|+++..-.+ ...+.++.+.|+++|+.+++|-.
T Consensus 137 ~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a 176 (353)
T TIGR03235 137 PDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAA 176 (353)
T ss_pred CCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEch
Confidence 35677777721111 12256788888999999999974
No 303
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.30 E-value=1.8e+02 Score=21.21 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=19.9
Q ss_pred hCCccEEEEe-cccCCHHHHHHHHHHHHHCCCeEEE
Q 028446 168 VKGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSM 202 (209)
Q Consensus 168 l~~~~~v~~~-~~~~~~~~~~~l~~~a~~~g~~v~~ 202 (209)
+++.|++..= .+ .....+.+++++||++|++|+.
T Consensus 101 ~~~gDvli~iS~S-G~s~~vi~a~~~Ak~~G~~vIa 135 (138)
T PF13580_consen 101 IRPGDVLIVISNS-GNSPNVIEAAEEAKERGMKVIA 135 (138)
T ss_dssp --TT-EEEEEESS-S-SHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEECCC-CCCHHHHHHHHHHHHCCCEEEE
Confidence 5677765543 21 1234578899999999998863
No 304
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=21.26 E-value=2.1e+02 Score=19.24 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=29.0
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEEEcCCCCee
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~~~~~G~rt 147 (209)
...++..-+| . +.+.+.|++.|+....-... ...+..+.+.||+|.+-
T Consensus 71 ~~~i~~~v~d-i-d~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~DpdG~~i 118 (121)
T cd07233 71 FGHLAFAVDD-V-YAACERLEEMGVEVTKPPGD-GGMKGIAFIKDPDGYWI 118 (121)
T ss_pred eEEEEEEeCC-H-HHHHHHHHHCCCEEeeCCcc-CCCceEEEEECCCCCEE
Confidence 3445544455 3 44678899999987532221 24445556678988874
No 305
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=21.25 E-value=5e+02 Score=21.85 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=27.7
Q ss_pred ceEecCChHHHHHHHHHhhcC-CCeEEEEEecCChhHHHHHHHHHhCCCcccce
Q 028446 74 IKTIAGGSVTNTIRGLSVGFG-VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL 126 (209)
Q Consensus 74 ~~~~~GG~~~N~a~~la~rlG-~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v 126 (209)
.....||+.++.++..+ .+. ....++.. +..++..+.+.+++.|+++..+
T Consensus 57 i~~t~~~t~al~~~~~~-l~~~~~~vlv~~--~~~~~~~~~~~a~~~g~~~~~v 107 (363)
T TIGR02326 57 VLLQGSGTFAVEAVIGS-AVPKDGKLLVVI--NGAYGARIVQIAEYLGIPHHVV 107 (363)
T ss_pred EEEcCCCHHHHHHHHHh-cCCCCCeEEEEe--CChhhHHHHHHHHHcCCceEEE
Confidence 34567777777776655 332 12233322 4456766666667777665443
No 306
>PRK15447 putative protease; Provisional
Probab=21.21 E-value=2e+02 Score=24.25 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=27.6
Q ss_pred CCccEEEEeccc------CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGM------FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~------~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.+|.||++... ...+.+.++++.++++|++|.+-..
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p 69 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTL 69 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 379999998221 1457788899999999999887543
No 307
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=21.18 E-value=1.4e+02 Score=25.07 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=31.9
Q ss_pred hhhhCCccEEEEecccC--C--HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 165 AEDVKGSKWLVLRFGMF--N--FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 165 ~~~l~~~~~v~~~~~~~--~--~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.++.+-..++++..+. | ...+..+++.++++++++++|.-
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaD 140 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDAD 140 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCC
Confidence 45778889999994442 2 35577889999999999999974
No 308
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.07 E-value=2.5e+02 Score=19.63 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=14.4
Q ss_pred eEEEEEecCChhHHHHHHHHHhCCCcc
Q 028446 97 CGLIGAYGDDQQGQLFVSNMQFSGVDV 123 (209)
Q Consensus 97 ~~~ig~vG~D~~G~~i~~~L~~~gVd~ 123 (209)
+.++|.=+....++.+...|.+.|.+.
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~ 29 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPA 29 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCce
Confidence 344444444456666666666555444
No 309
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=21.04 E-value=3.7e+02 Score=20.29 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeC
Q 028446 182 NFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 182 ~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
..+....+++.+.+.+.+.++|.
T Consensus 150 ~~~el~~al~~a~~~~~p~lIev 172 (175)
T cd02009 150 SLDELEQALESALAQDGPHVIEV 172 (175)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEE
Confidence 35567788888888888888875
No 310
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.03 E-value=2.6e+02 Score=18.54 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=27.6
Q ss_pred CCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
.++..|++.... ++.....+...|+.+++++.+-.+
T Consensus 26 gkaklViiA~D~-~~~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 26 GSVKEVVVAEDA-DPRLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred CCeeEEEEECCC-CHHHHHHHHHHHHHcCCCEEEECC
Confidence 467888888655 566777888899999999976553
No 311
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.85 E-value=2.4e+02 Score=19.14 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCcccceeecC-C-CceeEEEEEcCCCCeeEE
Q 028446 110 QLFVSNMQFSGVDVSRLRMKR-G-PTGQCVCLVDASGNRTMR 149 (209)
Q Consensus 110 ~~i~~~L~~~gVd~~~v~~~~-~-~T~~~~i~~~~~G~rt~~ 149 (209)
+.+.+.|.+.|+......... . ..+..+.+.||+|.+--+
T Consensus 73 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~ 114 (120)
T cd07254 73 AEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEV 114 (120)
T ss_pred HHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEE
Confidence 567888999998764322111 1 234567788999999543
No 312
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=20.75 E-value=2e+02 Score=24.61 Aligned_cols=43 Identities=9% Similarity=-0.082 Sum_probs=24.2
Q ss_pred cccCchhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 160 ADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 160 ~~~i~~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+++++|.. .+.|+++.+.. .....+.+..+-+.|.+++..-.|
T Consensus 80 p~~~~w~~-~gvDiVie~tG---~~~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 80 PEALPWRA-LGVDLVLDCTG---VYGNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred hhhccccc-cCCCEEEEccc---hhccHHHHHHHHHcCCeEEEecCC
Confidence 44455422 36899888721 122334445555678777766555
No 313
>PRK06460 hypothetical protein; Provisional
Probab=20.71 E-value=5.5e+02 Score=22.13 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=20.7
Q ss_pred CccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeC
Q 028446 170 GSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 170 ~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
+.++|+++..-.| .-...++.+.|+++|+.++.|-
T Consensus 130 ~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDe 167 (376)
T PRK06460 130 RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDA 167 (376)
T ss_pred CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEEC
Confidence 5667777721112 1113456677788888888884
No 314
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=20.70 E-value=5e+02 Score=21.66 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=22.3
Q ss_pred CccEEEEecccCC---HHHHHHHHHHHHHCCCeEEEeCC
Q 028446 170 GSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 170 ~~~~v~~~~~~~~---~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
+.++|+++..-.+ ...+.++.+.|+++|+.+++|..
T Consensus 124 ~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~ 162 (356)
T cd06451 124 DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAV 162 (356)
T ss_pred CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeee
Confidence 5677777621111 11245567778889999999974
No 315
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.67 E-value=1.1e+02 Score=28.37 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.7
Q ss_pred hcCCCeEEEEEecCChhHHHHHHHHHhCCCcc
Q 028446 92 GFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDV 123 (209)
Q Consensus 92 rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~ 123 (209)
..|..|.|++ |.|+.|..|....+++|++.
T Consensus 40 l~G~~v~fvt--GtDeHGt~I~~~A~~~g~tP 69 (558)
T COG0143 40 LRGYEVFFLT--GTDEHGTKIELKAEKEGITP 69 (558)
T ss_pred hcCCeEEEEe--ccCCCCCHHHHHHHHcCCCH
Confidence 4588998876 88999988877777777764
No 316
>PRK09082 methionine aminotransferase; Validated
Probab=20.62 E-value=1.6e+02 Score=25.40 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCccEEEEe-c-cc----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-F-GM----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~-~~----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
++.+++++. . +- .+.+...++++.|+++++.++.|-
T Consensus 162 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De 203 (386)
T PRK09082 162 PRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDE 203 (386)
T ss_pred ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEeh
Confidence 457788886 1 11 135677888999999999999875
No 317
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=20.49 E-value=1.8e+02 Score=23.93 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=34.3
Q ss_pred cccCchhhhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 160 ADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 160 ~~~i~~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
+.++.+...-+||.|.+-..+.+.+...++++.|++.|..+.+...+
T Consensus 114 ~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~ 160 (247)
T PRK13957 114 EIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHT 160 (247)
T ss_pred HHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECC
Confidence 33333445568999988843336677899999999999998887654
No 318
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=20.43 E-value=2.1e+02 Score=24.50 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=26.3
Q ss_pred hhCCccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCC
Q 028446 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (209)
Q Consensus 167 ~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~ 206 (209)
.++++|++++.. |.+...+++..+.+.|++ ++|.|+
T Consensus 46 ~~~~~D~vFlal---p~~~s~~~~~~~~~~g~~-VIDlSa 81 (310)
T TIGR01851 46 LLNAADVAILCL---PDDAAREAVSLVDNPNTC-IIDAST 81 (310)
T ss_pred hhcCCCEEEECC---CHHHHHHHHHHHHhCCCE-EEECCh
Confidence 446789888874 666777788877777775 778774
No 319
>PRK06290 aspartate aminotransferase; Provisional
Probab=20.40 E-value=1.6e+02 Score=25.75 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+.++|++. ..- .+.+...++++.|+++++.|+.|=
T Consensus 178 ~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DE 219 (410)
T PRK06290 178 EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDA 219 (410)
T ss_pred ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEec
Confidence 467888888 221 146778899999999999988773
No 320
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=20.39 E-value=1e+02 Score=22.75 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=22.3
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
..+...++-. ..+.+.+++++|.+.+-+.++|.
T Consensus 121 G~~~~~v~~~--~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 121 GIKGARVTTP--DPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp TSEEEEESCH--SHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCcEEEEccC--CHHHHHHHHHHHHhCCCcEEEEc
Confidence 4554544310 23678889999999998888873
No 321
>PRK14012 cysteine desulfurase; Provisional
Probab=20.37 E-value=3.3e+02 Score=23.56 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=28.5
Q ss_pred CCcccCchhhhCCccEEEEe-ccc--CCHHHHHHHHHHHHHCCCeEEEeCC
Q 028446 158 IQADELIAEDVKGSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLA 205 (209)
Q Consensus 158 l~~~~i~~~~l~~~~~v~~~-~~~--~~~~~~~~l~~~a~~~g~~v~~D~~ 205 (209)
++++++....-++.++|++. ... ....-+.++.+.|+++|+.++.|..
T Consensus 132 ~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a 182 (404)
T PRK14012 132 IDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAA 182 (404)
T ss_pred CCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcc
Confidence 34444432222356677776 221 1122356778889999999999974
No 322
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=20.33 E-value=82 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEeC
Q 028446 183 FEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 183 ~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
.+...++++.|+++|+++.-||
T Consensus 31 G~iAe~II~~Ake~~Vpi~edp 52 (92)
T COG2257 31 GEIAEKIIEKAKEHGVPIQEDP 52 (92)
T ss_pred hHHHHHHHHHHHHcCCCcccCH
Confidence 4567899999999999998876
No 323
>PRK13748 putative mercuric reductase; Provisional
Probab=20.32 E-value=2.4e+02 Score=25.67 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=33.9
Q ss_pred ceEecCCh-HHHHHHHHHhhcCCCeEEEEEe-----cCChhHHHHHHHHHhCCCccc
Q 028446 74 IKTIAGGS-VTNTIRGLSVGFGVPCGLIGAY-----GDDQQGQLFVSNMQFSGVDVS 124 (209)
Q Consensus 74 ~~~~~GG~-~~N~a~~la~rlG~~~~~ig~v-----G~D~~G~~i~~~L~~~gVd~~ 124 (209)
....-||. +.=.|..++ ++|.+|.++..- .+...++.+.+.|++.||++.
T Consensus 273 vvViGgG~ig~E~A~~l~-~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~ 328 (561)
T PRK13748 273 LAVIGSSVVALELAQAFA-RLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVL 328 (561)
T ss_pred EEEECCCHHHHHHHHHHH-HcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE
Confidence 33333333 345566777 799999998641 123577889999999999864
No 324
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=20.30 E-value=5.2e+02 Score=21.67 Aligned_cols=35 Identities=6% Similarity=0.165 Sum_probs=26.9
Q ss_pred ccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeCCCC
Q 028446 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (209)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~~~~ 207 (209)
++.|.+++. .++.+...++.|.++|++++.-.+.+
T Consensus 69 ~d~VvIDFT--~P~~~~~n~~~~~~~gv~~ViGTTG~ 103 (275)
T TIGR02130 69 PELICIDYT--HPSAVNDNAAFYGKHGIPFVMGTTGG 103 (275)
T ss_pred CCEEEEECC--ChHHHHHHHHHHHHCCCCEEEcCCCC
Confidence 787888874 46777788888999999888766543
No 325
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=20.28 E-value=1.1e+02 Score=20.47 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.1
Q ss_pred CChhHHHHHHHHHhCCCc
Q 028446 105 DDQQGQLFVSNMQFSGVD 122 (209)
Q Consensus 105 ~D~~G~~i~~~L~~~gVd 122 (209)
-|+.|+.+++.|++.|.+
T Consensus 14 lDPqG~ai~~al~~lG~~ 31 (80)
T PF02700_consen 14 LDPQGEAIKRALHRLGYD 31 (80)
T ss_dssp --HHHHHHHHHHHHTT-T
T ss_pred cCcHHHHHHHHHHHcCCc
Confidence 589999999999998866
No 326
>PTZ00072 40S ribosomal protein S13; Provisional
Probab=20.15 E-value=75 Score=23.96 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCChh---------HHHHHHHHHhCCC
Q 028446 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQ---------GQLFVSNMQFSGV 121 (209)
Q Consensus 82 ~~N~a~~la~rlG~~~~~ig~vG~D~~---------G~~i~~~L~~~gV 121 (209)
.-...+-|| +-|....-||.+=.|.+ |..|.+.|++.|+
T Consensus 30 Ve~~I~kla-KkG~~pSqIG~iLRD~~gi~~vk~vtG~kI~rILk~~Gl 77 (148)
T PTZ00072 30 VEDQICKLA-KKGLTPSQIGVILRDSMGIPQVKNVTGSKILRILKKNGL 77 (148)
T ss_pred HHHHHHHHH-HCCCCHhHhhhhhhhccCccceeeccchHHHHHHHhcCC
Confidence 345667777 78988888898889999 9999999999994
No 327
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.15 E-value=1.9e+02 Score=23.87 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=19.7
Q ss_pred CccEEEEecccCCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
..+++.+.......+.+.++++.+|++|..|.+.+
T Consensus 95 gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 95 VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEE
Confidence 34555555322234556666666666676666654
No 328
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=20.11 E-value=1.1e+02 Score=24.94 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=38.6
Q ss_pred cCChHHHHHHHHHhhc-CCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCce
Q 028446 78 AGGSVTNTIRGLSVGF-GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTG 134 (209)
Q Consensus 78 ~GG~~~N~a~~la~rl-G~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~ 134 (209)
.-|-..-.....+ .| ..++.++|.+|.-.-.+.+++.|++.|++-..+.+...|.|
T Consensus 169 th~h~~D~~~L~~-aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~~~~~l~ri~~PiG 225 (246)
T TIGR02964 169 THDHALDLELCHA-ALRRGDFAYFGLIGSKTKRARFEHRLRARGVDPAQIARMTCPIG 225 (246)
T ss_pred eCChHHHHHHHHH-HHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCCHHHHhhEeCCCC
Confidence 3343445444444 46 46788999999999999999999999987654443333444
No 329
>PRK06207 aspartate aminotransferase; Provisional
Probab=20.09 E-value=1.8e+02 Score=25.29 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=25.7
Q ss_pred CCccEEEEe-ccc-----CCHHHHHHHHHHHHHCCCeEEEeC
Q 028446 169 KGSKWLVLR-FGM-----FNFEVIQAAIRIAKQEGLSVSMDL 204 (209)
Q Consensus 169 ~~~~~v~~~-~~~-----~~~~~~~~l~~~a~~~g~~v~~D~ 204 (209)
++.+.+++. ..- .+.+...++++.|+++++.++.|=
T Consensus 177 ~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De 218 (405)
T PRK06207 177 AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQ 218 (405)
T ss_pred hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 356766666 321 146678889999999999998874
No 330
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=20.06 E-value=2.1e+02 Score=23.09 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecCCCceeEEEE--EcCCCCe--eEEecCCcCCC
Q 028446 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL--VDASGNR--TMRPCLSNAVK 157 (209)
Q Consensus 82 ~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~T~~~~i~--~~~~G~r--t~~~~~ga~~~ 157 (209)
|--+|..+. ++|..+.++.. |..++.+...|....-.-..+....+.-+..++. +...|-. .+..|......
T Consensus 86 G~~Ta~~l~-~~G~~~~~~p~---~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~ 161 (248)
T COG1587 86 GEKTAEALR-KLGIKVDFIPE---DGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPP 161 (248)
T ss_pred cHHHHHHHH-HhCCCCCcCCC---ccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCC
Confidence 467888887 78988877655 5567777777877654312222221111111110 0112333 22335443333
Q ss_pred CCcccCc-hhhhCCccEEEEecccCCHHHHHHHHHHHHHCCC
Q 028446 158 IQADELI-AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGL 198 (209)
Q Consensus 158 l~~~~i~-~~~l~~~~~v~~~~~~~~~~~~~~l~~~a~~~g~ 198 (209)
++++.+. .....+.|+|.+. +...++.+++.+++.+.
T Consensus 162 ~~~~~~~~~~~~~~~d~v~ft----S~~~v~~~~~~~~~~~~ 199 (248)
T COG1587 162 LDEATLIELLKLGEVDAVVFT----SSSAVRALLALAPESGI 199 (248)
T ss_pred ccHHHHHHHHHhCCCCEEEEe----CHHHHHHHHHHccccch
Confidence 3322221 2244678888886 34556666666666553
No 331
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.02 E-value=3.3e+02 Score=22.60 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCChhHHHHHHHHHhCCCcccceeecC
Q 028446 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR 130 (209)
Q Consensus 82 ~~N~a~~la~rlG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~ 130 (209)
++=.|-.|. .+|.++..+..||||.. .|.+.|+..-=..+.+....
T Consensus 23 a~~la~~L~-~~G~~v~~~~~VgD~~~--~I~~~l~~a~~r~D~vI~tG 68 (255)
T COG1058 23 AAFLADELT-ELGVDLARITTVGDNPD--RIVEALREASERADVVITTG 68 (255)
T ss_pred HHHHHHHHH-hcCceEEEEEecCCCHH--HHHHHHHHHHhCCCEEEECC
Confidence 455566676 68999999999999832 23344433211234455444
Done!