BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028447
(209 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255581554|ref|XP_002531582.1| serine/arginine rich splicing factor, putative [Ricinus communis]
gi|223528778|gb|EEF30785.1| serine/arginine rich splicing factor, putative [Ricinus communis]
Length = 216
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/177 (81%), Positives = 153/177 (86%), Gaps = 1/177 (0%)
Query: 16 YGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT 75
YGRRYRSPSPR YGGR RDLPTSLLVRNLRHDCR EDLRGPFG FG LKDIYLPRDYYT
Sbjct: 18 YGRRYRSPSPRNRYGGRSRDLPTSLLVRNLRHDCRTEDLRGPFGHFGPLKDIYLPRDYYT 77
Query: 76 GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERF-SRSY 134
GEPRGFGFVQY+DPADAADAK+HMDG +LLGRELTVVFAEENRKKP+EMRARER RSY
Sbjct: 78 GEPRGFGFVQYVDPADAADAKHHMDGEILLGRELTVVFAEENRKKPAEMRARERVRGRSY 137
Query: 135 DGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSPYG 191
D +RSP YSRSP Y R YSRSP YYS PR+ SRSISPR RRYRE+S+SRSPY
Sbjct: 138 DRKRSPQCYSRSPRYRRSYSRSPLYYSRSPRQRNYSRSISPRDRRYREQSFSRSPYA 194
>gi|225435731|ref|XP_002285703.1| PREDICTED: uncharacterized protein LOC100263951 [Vitis vinifera]
Length = 245
Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 165/231 (71%), Positives = 176/231 (76%), Gaps = 27/231 (11%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRG--RDLPTSLLVRNLRHDCRPEDLRGPF 58
MRGRSYS PSPPR YGRR RSPSPRG YGGRG RDLPTSLLVRNLRHDCR EDLR PF
Sbjct: 1 MRGRSYS--PSPPRGYGRRGRSPSPRGRYGGRGSARDLPTSLLVRNLRHDCRGEDLRRPF 58
Query: 59 GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENR 118
GQFG LKDIYLPRDYYTGEPRGFGFVQY+DPADAA+AKY MDG +L GRELTVVFAEENR
Sbjct: 59 GQFGPLKDIYLPRDYYTGEPRGFGFVQYVDPADAAEAKYQMDGQILHGRELTVVFAEENR 118
Query: 119 KKPSEMRARERF-SRSYDGRRSPPRYSRSP--HYARGYSRSPDYYSPPPRRGRDSRSISP 175
KKPS+MRARER R YD RRSP RYSRSP +AR SR DYYSP P+R + SRS+SP
Sbjct: 119 KKPSDMRARERGRGRFYDRRRSPLRYSRSPPPRHARSPSRGRDYYSPSPKRRQYSRSVSP 178
Query: 176 RYRRY----------RERSYSRSP--YGSRS--------YSPSRSRSRSLD 206
+ RRY R RSY+RSP GSRS SPSR +SRS D
Sbjct: 179 QDRRYSRDRSYTPDGRRRSYTRSPPYNGSRSRSQSPIRGESPSRLQSRSPD 229
>gi|388509350|gb|AFK42741.1| unknown [Lotus japonicus]
Length = 221
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/195 (77%), Positives = 161/195 (82%), Gaps = 5/195 (2%)
Query: 1 MRGRSYSYSPSPPRDYGRRYR-SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFG 59
MRGRSYSYSPSPPR YG R R SPSP+G Y GR RDLPTSLLVRNL D R EDL GPF
Sbjct: 1 MRGRSYSYSPSPPRRYGGRRRRSPSPKGRYRGRERDLPTSLLVRNLHRDTRTEDLHGPFS 60
Query: 60 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 119
FG +KD+YLPRDYYTG PRGFGFVQY+DPADAADAKYH+DG +LLGRELTVVFAEENRK
Sbjct: 61 HFGPIKDVYLPRDYYTGNPRGFGFVQYVDPADAADAKYHLDGQILLGRELTVVFAEENRK 120
Query: 120 KPSEMRARERFS---RSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPR 176
KP+EMRARER S RSYD RRSP YSRSP YAR YSRSPD Y+P PRR R S+SISPR
Sbjct: 121 KPAEMRARERHSTRERSYDYRRSPRGYSRSPRYARTYSRSPD-YTPSPRRWRYSKSISPR 179
Query: 177 YRRYRERSYSRSPYG 191
RRY RSYS SPYG
Sbjct: 180 DRRYGRRSYSGSPYG 194
>gi|297746454|emb|CBI16510.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 165/255 (64%), Positives = 176/255 (69%), Gaps = 51/255 (20%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRG--RDLPTSLLVRNLRHDCRPEDLRGPF 58
MRGRSYS PSPPR YGRR RSPSPRG YGGRG RDLPTSLLVRNLRHDCR EDLR PF
Sbjct: 1 MRGRSYS--PSPPRGYGRRGRSPSPRGRYGGRGSARDLPTSLLVRNLRHDCRGEDLRRPF 58
Query: 59 GQFGRLKDIYLPRDYYTGE------------------------PRGFGFVQYIDPADAAD 94
GQFG LKDIYLPRDYYTGE PRGFGFVQY+DPADAA+
Sbjct: 59 GQFGPLKDIYLPRDYYTGEIKVLKTSINLEEFQVILKLTLAREPRGFGFVQYVDPADAAE 118
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERF-SRSYDGRRSPPRYSRSP--HYAR 151
AKY MDG +L GRELTVVFAEENRKKPS+MRARER R YD RRSP RYSRSP +AR
Sbjct: 119 AKYQMDGQILHGRELTVVFAEENRKKPSDMRARERGRGRFYDRRRSPLRYSRSPPPRHAR 178
Query: 152 GYSRSPDYYSPPPRRGRDSRSISPRYRRY----------RERSYSRSP--YGSRS----- 194
SR DYYSP P+R + SRS+SP+ RRY R RSY+RSP GSRS
Sbjct: 179 SPSRGRDYYSPSPKRRQYSRSVSPQDRRYSRDRSYTPDGRRRSYTRSPPYNGSRSRSQSP 238
Query: 195 ---YSPSRSRSRSLD 206
SPSR +SRS D
Sbjct: 239 IRGESPSRLQSRSPD 253
>gi|449442606|ref|XP_004139072.1| PREDICTED: serine/arginine-rich splicing factor 33-like [Cucumis
sativus]
gi|449528235|ref|XP_004171111.1| PREDICTED: serine/arginine-rich splicing factor 33-like [Cucumis
sativus]
Length = 285
Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 155/227 (68%), Positives = 167/227 (73%), Gaps = 24/227 (10%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSY+ PSPPR YGRR RSPSPRG Y GRGRDLPTSLLVRNL HDCRPEDLR PFGQ
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQ 58
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG +KDIYLP+DYYTGEPRGFGFVQY+DPADAADAK+HMDG +LLGRELTVVFAEENRKK
Sbjct: 59 FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKK 118
Query: 121 PSEMRARERFSRSYDGRRSPP---------------RYSRS--PHYARGYSRSPDYYSPP 163
PS+MRARER S Y RR P RYSRS P +AR SRS DY S P
Sbjct: 119 PSDMRARERGSGRYHDRRRSPPRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASQP 178
Query: 164 PRRGRDSRSISPRYR-RYRERSYSRSPYGSRSYSPSRSRSRSLDYSR 209
P++ SRS+SPR R RERS+ R RSY SRS LD SR
Sbjct: 179 PKQRAYSRSLSPRDRPDSRERSFPRQESRGRSY----SRSPRLDGSR 221
>gi|226493261|ref|NP_001151991.1| LOC100285628 [Zea mays]
gi|195651649|gb|ACG45292.1| splicing factor, arginine/serine-rich 4 [Zea mays]
gi|448878242|gb|AGE46084.1| arginine/serine-rich splicing factor SCL25B transcript I [Zea mays]
gi|448878246|gb|AGE46086.1| arginine/serine-rich splicing factor SCL25B transcript III [Zea
mays]
gi|448878250|gb|AGE46088.1| arginine/serine-rich splicing factor SCL25B transcript V [Zea mays]
gi|448878254|gb|AGE46090.1| arginine/serine-rich splicing factor SCL25B transcript VII [Zea
mays]
gi|448878256|gb|AGE46091.1| arginine/serine-rich splicing factor SCL25B transcript VIII [Zea
mays]
Length = 209
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/198 (71%), Positives = 153/198 (77%), Gaps = 14/198 (7%)
Query: 4 RSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR 63
R YSYSPSPPR Y RR RSPSP HYGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGR
Sbjct: 3 RGYSYSPSPPRGYRRRARSPSPHDHYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGR 62
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
+KDIYLPRDYYTG+PRGFGFVQY DPADAADAKY+MDG ++LGR++TVVFAEENRKKP E
Sbjct: 63 VKDIYLPRDYYTGDPRGFGFVQYYDPADAADAKYYMDGQVVLGRQITVVFAEENRKKPQE 122
Query: 124 MRARERF-SRSYDGRRSPPRYSRSPHYARGY--SRSPDYYSPPPRRGRDSRSISPRYRRY 180
MRAR+R SYD RR SRSPHY RG SRS Y PP+ +PR+ R
Sbjct: 123 MRARDRVRGHSYDDRRYS--RSRSPHYYRGRSPSRSQSYSRSPPQ--------NPRH-RL 171
Query: 181 RERSYSRSPYGSRSYSPS 198
RERSYS SP SRS S S
Sbjct: 172 RERSYSGSPVDSRSRSGS 189
>gi|297847894|ref|XP_002891828.1| hypothetical protein ARALYDRAFT_892527 [Arabidopsis lyrata subsp.
lyrata]
gi|297337670|gb|EFH68087.1| hypothetical protein ARALYDRAFT_892527 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/219 (68%), Positives = 160/219 (73%), Gaps = 17/219 (7%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSY+ PSPPR YGRR RSPSPRG YGGR RDLPTSLLVRNLRHDCR EDLR F Q
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 58
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG +KDIYLPRDYYTG+PRGFGFVQ++DPADAADAK+HMDGYLLLGRELTVVFAEENRKK
Sbjct: 59 FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 118
Query: 121 PSEMRARER---------FSRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSR 171
P+EMRARER R R S R SRS DYYSPPPRR R
Sbjct: 119 PTEMRARERGGGRSSRFRDRRRTPPRYYSRSRSPPRRRDRSRSRSGDYYSPPPRR-HHPR 177
Query: 172 SISPRYRRYR-ERSYSRSPYGS----RSYSPSRSRSRSL 205
SISPR RY RSYSRSP + RS +P+R SR+L
Sbjct: 178 SISPREERYDGRRSYSRSPASNGSRGRSLTPARGNSRNL 216
>gi|334183335|ref|NP_001185236.1| SC35-like splicing factor 33 [Arabidopsis thaliana]
gi|332195103|gb|AEE33224.1| SC35-like splicing factor 33 [Arabidopsis thaliana]
Length = 300
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/229 (67%), Positives = 164/229 (71%), Gaps = 27/229 (11%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSY+ PSPPR YGRR RSPSPRG YGGR RDLPTSLLVRNLRHDCR EDLR F Q
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 58
Query: 61 FGRLKDIYLPRDYYTG------------EPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108
FG +KDIYLPRDYYTG +PRGFGFVQ++DPADAADAK+HMDGYLLLGRE
Sbjct: 59 FGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRE 118
Query: 109 LTVVFAEENRKKPSEMRARER--FSRSYDGRRS-----PPRYSRSPHYARGYSRSPDYYS 161
LTVVFAEENRKKP+EMRARER SR D RR+ S P R SRS DYYS
Sbjct: 119 LTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYS 178
Query: 162 PPPRRGRDSRSISPRYRRYR-ERSYSRSPYGS----RSYSPSRSRSRSL 205
PPPRR RSISPR RY RSYSRSP RS +P R +SRSL
Sbjct: 179 PPPRR-HHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 226
>gi|240254274|ref|NP_001031195.4| SC35-like splicing factor 33 [Arabidopsis thaliana]
gi|332195102|gb|AEE33223.1| SC35-like splicing factor 33 [Arabidopsis thaliana]
Length = 220
Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 151/216 (69%), Positives = 161/216 (74%), Gaps = 14/216 (6%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSY+ PSPPR YGRR RSPSPRG YGGR RDLPTSLLVRNLRHDCR EDLR F Q
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 58
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG +KDIYLPRDYYTG+PRGFGFVQ++DPADAADAK+HMDGYLLLGRELTVVFAEENRKK
Sbjct: 59 FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 118
Query: 121 PSEMRARERFSRSYDGRRSP------PRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSIS 174
P+EMRARER + RR S P R SRS DYYSPPPRR RSIS
Sbjct: 119 PTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRR-HHPRSIS 177
Query: 175 PRYRRYR-ERSYSRSPYGS----RSYSPSRSRSRSL 205
PR RY RSYSRSP RS +P R +SRSL
Sbjct: 178 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 213
>gi|12323160|gb|AAG51556.1|AC027034_2 unknown protein; 47745-45927 [Arabidopsis thaliana]
Length = 220
Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 151/216 (69%), Positives = 161/216 (74%), Gaps = 14/216 (6%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSY+ PSPPR YGRR RSPSPRG YGGR RDLPTSLLVRNLRHDCR EDLR F Q
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 58
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG +KDIYLPRDYYTG+PRGFGFVQ++DPADAADAK+HMDGYLLLGRELTVVFAEENRKK
Sbjct: 59 FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 118
Query: 121 PSEMRARERFSRSYDGRRSP------PRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSIS 174
P+EMRARER + RR S P R SRS DYYSPPPRR RSIS
Sbjct: 119 PTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRR-HHPRSIS 177
Query: 175 PRYRRYR-ERSYSRSPYGS----RSYSPSRSRSRSL 205
PR RY RSYSRSP RS +P R +SRSL
Sbjct: 178 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 213
>gi|240254272|ref|NP_564685.4| SC35-like splicing factor 33 [Arabidopsis thaliana]
gi|75337149|sp|Q9SEU4.1|SR33_ARATH RecName: Full=Serine/arginine-rich splicing factor 33; AltName:
Full=SC35-like splicing factor 33; Short=At-SCL33;
Short=AtSCL33
gi|6572475|gb|AAF17288.1|AF099940_1 Serine/arginine-rich protein [Arabidopsis thaliana]
gi|9843659|emb|CAC03603.1| SC35-like splicing factor SCL33, 33 kD [Arabidopsis thaliana]
gi|56744214|gb|AAW28547.1| At1g55310 [Arabidopsis thaliana]
gi|332195101|gb|AEE33222.1| SC35-like splicing factor 33 [Arabidopsis thaliana]
Length = 287
Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 151/216 (69%), Positives = 161/216 (74%), Gaps = 14/216 (6%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSY+ PSPPR YGRR RSPSPRG YGGR RDLPTSLLVRNLRHDCR EDLR F Q
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 58
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG +KDIYLPRDYYTG+PRGFGFVQ++DPADAADAK+HMDGYLLLGRELTVVFAEENRKK
Sbjct: 59 FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 118
Query: 121 PSEMRARERFSRSYDGRRSP------PRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSIS 174
P+EMRARER + RR S P R SRS DYYSPPPRR RSIS
Sbjct: 119 PTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRR-HHPRSIS 177
Query: 175 PRYRRYR-ERSYSRSPYGS----RSYSPSRSRSRSL 205
PR RY RSYSRSP RS +P R +SRSL
Sbjct: 178 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 213
>gi|15293081|gb|AAK93651.1| unknown protein [Arabidopsis thaliana]
Length = 263
Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 151/216 (69%), Positives = 161/216 (74%), Gaps = 14/216 (6%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSY+ PSPPR YGRR RSPSPRG YGGR RDLPTSLLVRNLRHDCR EDLR F Q
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 58
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG +KDIYLPRDYYTG+PRGFGFVQ++DPADAADAK+HMDGYLLLGRELTVVFAEENRKK
Sbjct: 59 FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 118
Query: 121 PSEMRARERFSRSYDGRRSP------PRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSIS 174
P+EMRARER + RR S P R SRS DYYSPPPRR RSIS
Sbjct: 119 PTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRR-HHPRSIS 177
Query: 175 PRYRRYR-ERSYSRSPYGS----RSYSPSRSRSRSL 205
PR RY RSYSRSP RS +P R +SRSL
Sbjct: 178 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 213
>gi|194688600|gb|ACF78384.1| unknown [Zea mays]
gi|194700100|gb|ACF84134.1| unknown [Zea mays]
gi|219887871|gb|ACL54310.1| unknown [Zea mays]
gi|224035011|gb|ACN36581.1| unknown [Zea mays]
gi|238908719|gb|ACF81490.2| unknown [Zea mays]
gi|448878248|gb|AGE46087.1| arginine/serine-rich splicing factor SCL25B transcript IV [Zea
mays]
Length = 209
Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 133/202 (65%), Positives = 145/202 (71%), Gaps = 22/202 (10%)
Query: 4 RSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR 63
R YSYSPSPPR Y RR RSPSP HYGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGR
Sbjct: 3 RGYSYSPSPPRGYRRRARSPSPHDHYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGR 62
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
+KDIYLPRDYYTG+PRGFGFVQY DPADAADAKY+MDG ++LGR++TVVFAEENRKKP E
Sbjct: 63 VKDIYLPRDYYTGDPRGFGFVQYYDPADAADAKYYMDGQVVLGRQITVVFAEENRKKPQE 122
Query: 124 MRARERF-------SRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPR 176
MRAR+R R R RSP ++ YSRSP +PR
Sbjct: 123 MRARDRVRGHSYDDRRYSRSRSPRYYRGRSPSRSQSYSRSP--------------PQNPR 168
Query: 177 YRRYRERSYSRSPYGSRSYSPS 198
+ R RERSYS SP SRS S S
Sbjct: 169 H-RLRERSYSGSPVDSRSRSGS 189
>gi|9843661|emb|CAC03604.1| SC35-like splicing factor SCL30a, 30a kD [Arabidopsis thaliana]
Length = 261
Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/215 (66%), Positives = 158/215 (73%), Gaps = 14/215 (6%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGG-RGRDLPTSLLVRNLRHDCRPEDLRGPFG 59
MRGRSY+ PSPPR YGRR RSPSPRG +GG R DLPTSLLVRNLRHDCR EDLR PF
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 58
Query: 60 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 119
QFG +KDIYLPRDYYTG+PRGFGF+Q++DPADAA+AK+ MDGYLLLGRELTVVFAEENRK
Sbjct: 59 QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 118
Query: 120 KPSEMRARERFSRSY-----DGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSIS 174
KP+EMR R+R RS S R SRS Y SPP +R SRS+S
Sbjct: 119 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPRRGRRSRSRSCGYNSPPAKR-HQSRSVS 177
Query: 175 PRYRRY-RERSYSRSP--YGS--RSYSPSRSRSRS 204
P+ RRY +ERSYSRSP GS RS SP R +S S
Sbjct: 178 PQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHS 212
>gi|15231285|ref|NP_187966.1| SC35-like splicing factor 30A [Arabidopsis thaliana]
gi|13878011|gb|AAK44083.1|AF370268_1 putative serine/arginine-rich protein [Arabidopsis thaliana]
gi|11994559|dbj|BAB02599.1| unnamed protein product [Arabidopsis thaliana]
gi|17104623|gb|AAL34200.1| putative serine/arginine-rich protein [Arabidopsis thaliana]
gi|332641854|gb|AEE75375.1| SC35-like splicing factor 30A [Arabidopsis thaliana]
Length = 262
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/215 (64%), Positives = 155/215 (72%), Gaps = 13/215 (6%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGG-RGRDLPTSLLVRNLRHDCRPEDLRGPFG 59
MRGRSY+ PSPPR YGRR RSPSPRG +GG R DLPTSLLVRNLRHDCR EDLR PF
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 58
Query: 60 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 119
QFG +KDIYLPRDYYTG+PRGFGF+Q++DPADAA+AK+ MDGYLLLGRELTVVFAEENRK
Sbjct: 59 QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 118
Query: 120 KPSEMRARERFSRSY-----DGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSIS 174
KP+EMR R+R RS S P R Y+ PP + SRS+S
Sbjct: 119 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVS 178
Query: 175 PRYRRY-RERSYSRSP--YGS--RSYSPSRSRSRS 204
P+ RRY +ERSYSRSP GS RS SP R +S S
Sbjct: 179 PQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHS 213
>gi|195631119|gb|ACG36660.1| splicing factor, arginine/serine-rich 4 [Zea mays]
gi|195642888|gb|ACG40912.1| splicing factor, arginine/serine-rich 4 [Zea mays]
gi|195645762|gb|ACG42349.1| splicing factor, arginine/serine-rich 4 [Zea mays]
Length = 209
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/202 (65%), Positives = 145/202 (71%), Gaps = 22/202 (10%)
Query: 4 RSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR 63
R YSYSPSPPR Y RR RSPSP HYGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGR
Sbjct: 3 RGYSYSPSPPRGYRRRARSPSPHDHYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGR 62
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
+KDIYLPRDYYTG+PRGFGFVQY DPADAADAKY+MDG ++LGR++TVVFAEENRKKP E
Sbjct: 63 VKDIYLPRDYYTGDPRGFGFVQYYDPADAADAKYYMDGQVVLGRQITVVFAEENRKKPQE 122
Query: 124 MRARERF-------SRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPR 176
MRAR+R R R RSP ++ YSRSP +PR
Sbjct: 123 MRARDRVRGHSYDDRRYSRSRSPRYYRGRSPSRSQSYSRSP--------------PQNPR 168
Query: 177 YRRYRERSYSRSPYGSRSYSPS 198
+ R RERSYS SP SRS S S
Sbjct: 169 H-RLRERSYSGSPVDSRSRSGS 189
>gi|359487440|ref|XP_002267230.2| PREDICTED: uncharacterized protein LOC100259677 [Vitis vinifera]
Length = 225
Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/192 (78%), Positives = 161/192 (83%), Gaps = 5/192 (2%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSYS PSPPR Y RR RSPSPRG +GGRGRDLPTSLLVRNLRHDCRPEDLR PFGQ
Sbjct: 1 MRGRSYS--PSPPRGYSRRGRSPSPRGRHGGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQ 58
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG LKDIYLPRDYYTGEPRGFGFVQY+DPADAA+AKY MDG +LLGRELTVVFAEENRK+
Sbjct: 59 FGPLKDIYLPRDYYTGEPRGFGFVQYVDPADAAEAKYQMDGQVLLGRELTVVFAEENRKR 118
Query: 121 PSEMRARERF-SRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPR-YR 178
P +MRARER R D RRSPPRYSRSP YAR SRSP++Y P PRR SRS+SP+ R
Sbjct: 119 PVDMRARERTRGRPSDRRRSPPRYSRSPRYARSRSRSPNHYPPSPRRRHYSRSVSPQDKR 178
Query: 179 RYR-ERSYSRSP 189
RY E+ YS SP
Sbjct: 179 RYSGEQPYSASP 190
>gi|297834182|ref|XP_002884973.1| hypothetical protein ARALYDRAFT_478747 [Arabidopsis lyrata subsp.
lyrata]
gi|297330813|gb|EFH61232.1| hypothetical protein ARALYDRAFT_478747 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 139/215 (64%), Positives = 153/215 (71%), Gaps = 13/215 (6%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGG-RGRDLPTSLLVRNLRHDCRPEDLRGPFG 59
MRGRSY+ PSPPR YGRR RSPSPRG YGG R RDLPTSLLVRNLRHDCR EDLR PF
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYGGSRDRDLPTSLLVRNLRHDCRQEDLRRPFE 58
Query: 60 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 119
QFG +KDIYLPRDYYTG+PRGFGF+QY+DPADAA+AK+HMDG LLGRELTVVFAEENRK
Sbjct: 59 QFGPVKDIYLPRDYYTGDPRGFGFIQYVDPADAAEAKHHMDGSHLLGRELTVVFAEENRK 118
Query: 120 KPSEMRARERFSRSY-----DGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSIS 174
KP+EMR R+R RS S P R Y P + SRS+S
Sbjct: 119 KPTEMRTRDRGGRSNRFNDRRRSPPRYSRSPPPRRGRRSRSRSRGYDSPSAKRHQSRSVS 178
Query: 175 PRYRRY-RERSYSRSP--YGS--RSYSPSRSRSRS 204
P+ RRY +ERSYSRSP GS RS SP R +S S
Sbjct: 179 PQDRRYEKERSYSRSPPHNGSRIRSGSPGRVKSHS 213
>gi|224139940|ref|XP_002323350.1| predicted protein [Populus trichocarpa]
gi|222867980|gb|EEF05111.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 112/130 (86%), Positives = 123/130 (94%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSYSYSPSPPR YGR++RSPSPRG +GGRGRDLPTSLLVRNLR DCRPEDLRGPFG+
Sbjct: 1 MRGRSYSYSPSPPRGYGRKHRSPSPRGRHGGRGRDLPTSLLVRNLRLDCRPEDLRGPFGR 60
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG LKD+YLPRDYYTGEPRGFGFVQY++PADAADAK+HMDG +L GRELTVVFAEENRKK
Sbjct: 61 FGPLKDVYLPRDYYTGEPRGFGFVQYLEPADAADAKHHMDGEILFGRELTVVFAEENRKK 120
Query: 121 PSEMRARERF 130
P+EMRAR+R
Sbjct: 121 PAEMRARDRV 130
>gi|372863947|gb|AEX99749.1| putative serine/arginine-rich protein SCL subfamily member
[Saccharum hybrid cultivar]
Length = 209
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/127 (83%), Positives = 114/127 (89%)
Query: 4 RSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR 63
R YSYSPSPPR Y R RSPSPR +YGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGR
Sbjct: 3 RGYSYSPSPPRGYRRSERSPSPRDYYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGR 62
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
LKDIYLPRDYYTGEPRGFGFVQY +P DAADAKY+MDG ++LGR++TVVFAEENRKKP E
Sbjct: 63 LKDIYLPRDYYTGEPRGFGFVQYYEPDDAADAKYYMDGQVVLGRQITVVFAEENRKKPQE 122
Query: 124 MRARERF 130
MRAR+R
Sbjct: 123 MRARDRV 129
>gi|357121831|ref|XP_003562621.1| PREDICTED: probable RNA-binding protein 19-like [Brachypodium
distachyon]
Length = 205
Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 124/183 (67%), Positives = 132/183 (72%), Gaps = 19/183 (10%)
Query: 19 RYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 78
R RSPSPR Y GRGRDLPTSLLVRNLR DCRPEDLR PFGQFGRLKD+Y+PRDYYT EP
Sbjct: 19 RARSPSPRVRYVGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGRLKDVYIPRDYYTREP 78
Query: 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERF-SRSYDGR 137
RGFGFVQY DP DAADAKY+MDG ++LGRE+ VVFA+ENRK PSEMR RE RSYD R
Sbjct: 79 RGFGFVQYFDPEDAADAKYYMDGQVVLGREIAVVFAQENRKHPSEMRTRESSRGRSYDRR 138
Query: 138 RSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRY--RRYRERSYSRSPYGSRSY 195
RS RSP R YSRSP SPRY RR+RE SYSRSP RS
Sbjct: 139 RSLSPRGRSPFRGRSYSRSP----------------SPRYERRRFREDSYSRSPVDGRSR 182
Query: 196 SPS 198
S S
Sbjct: 183 SGS 185
>gi|326532152|dbj|BAK01452.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 208
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 143/200 (71%), Gaps = 20/200 (10%)
Query: 4 RSYSYSPSPP-RDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFG 62
R YSYSPSPP R Y R RSPSPR Y GRGRDLPTSLLVRNLR DCRP+DLR PF QFG
Sbjct: 3 RGYSYSPSPPPRGYRGRARSPSPRDRYDGRGRDLPTSLLVRNLRRDCRPDDLRRPFAQFG 62
Query: 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 122
RLKD+Y+PRDYYT EPRGFGFVQY DP DAADAKY+MDG ++LGRE+ VVFA+ENRKKP+
Sbjct: 63 RLKDVYIPRDYYTQEPRGFGFVQYFDPDDAADAKYYMDGQVILGREVAVVFAQENRKKPA 122
Query: 123 EMRARERF-SRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRYR 181
EMR RE RSYD R SP R + R YSRSP SP P R RR+R
Sbjct: 123 EMRTRESSRGRSYDQRHSPSPRGRPSYRGRSYSRSP---SPRPAR-----------RRFR 168
Query: 182 ERS--YSRSPY--GSRSYSP 197
+ S SRSP GSRS SP
Sbjct: 169 DESPLRSRSPVDSGSRSVSP 188
>gi|297722159|ref|NP_001173443.1| Os03g0374575 [Oryza sativa Japonica Group]
gi|255674538|dbj|BAH92171.1| Os03g0374575 [Oryza sativa Japonica Group]
Length = 251
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/128 (84%), Positives = 115/128 (89%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFG 62
GR Y Y PSPPR+Y RR RSPSPRG YGGR RDLPTSLLVRNLR DCRP+DLR PFG+FG
Sbjct: 9 GRGYDYGPSPPREYRRRARSPSPRGRYGGRDRDLPTSLLVRNLRRDCRPDDLRRPFGKFG 68
Query: 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 122
R+KDIYLPRDYYTGEPRGFGF+QY DP DAADAKYHMDG +LLGRE+TVVFAEENRKKPS
Sbjct: 69 RVKDIYLPRDYYTGEPRGFGFIQYYDPEDAADAKYHMDGQILLGREVTVVFAEENRKKPS 128
Query: 123 EMRARERF 130
EMRARER
Sbjct: 129 EMRARERV 136
>gi|108708411|gb|ABF96206.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 218
Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/128 (84%), Positives = 115/128 (89%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFG 62
GR Y Y PSPPR+Y RR RSPSPRG YGGR RDLPTSLLVRNLR DCRP+DLR PFG+FG
Sbjct: 2 GRGYDYGPSPPREYRRRARSPSPRGRYGGRDRDLPTSLLVRNLRRDCRPDDLRRPFGKFG 61
Query: 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 122
R+KDIYLPRDYYTGEPRGFGF+QY DP DAADAKYHMDG +LLGRE+TVVFAEENRKKPS
Sbjct: 62 RVKDIYLPRDYYTGEPRGFGFIQYYDPEDAADAKYHMDGQILLGREVTVVFAEENRKKPS 121
Query: 123 EMRARERF 130
EMRARER
Sbjct: 122 EMRARERV 129
>gi|224052944|ref|XP_002297637.1| predicted protein [Populus trichocarpa]
gi|222844895|gb|EEE82442.1| predicted protein [Populus trichocarpa]
Length = 278
Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/166 (67%), Positives = 117/166 (70%), Gaps = 33/166 (19%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSYS PSPPR YGRR RSPSPRG YGGR RDLPTSLLVRNLRHDCRPEDLR PF Q
Sbjct: 1 MRGRSYS--PSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRPEDLRRPFEQ 58
Query: 61 FGRLKDIYLPRDYYTG-------------------------------EPRGFGFVQYIDP 89
FG LKDIYLPRDYYTG EPRGFGFVQ+ DP
Sbjct: 59 FGALKDIYLPRDYYTGSFEDDVNDSEDLKEVGFEYIVKRFQVLKSFKEPRGFGFVQFADP 118
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYD 135
DAA+AK+HMDG +LLGRELTVVFAEENRKKP +MR RER S D
Sbjct: 119 HDAAEAKHHMDGRVLLGRELTVVFAEENRKKPMDMRTRERTSCGVD 164
>gi|449437540|ref|XP_004136550.1| PREDICTED: serine/arginine-rich splicing factor 33-like [Cucumis
sativus]
gi|449516345|ref|XP_004165207.1| PREDICTED: serine/arginine-rich splicing factor 33-like [Cucumis
sativus]
Length = 210
Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 137/192 (71%), Positives = 148/192 (77%), Gaps = 7/192 (3%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSYSYSPSPPR YGRRYRSPS GGR RDLPTSLLVRNLRHDCRPEDLRG FG+
Sbjct: 1 MRGRSYSYSPSPPRSYGRRYRSPS-PRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGR 59
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG LKDIYLPRDYY+GEPRGFGFVQ++D ADAADAKY +DG +LLG ELTVVFAEENRK+
Sbjct: 60 FGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 119
Query: 121 PSEMRARERFSRSYDG---RRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRY 177
P EMRAR+ R SP RYS+SPHY R YSR P+YYSP R P
Sbjct: 120 PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGP-- 177
Query: 178 RRYRERSYSRSP 189
RYRE+SYSRSP
Sbjct: 178 -RYREQSYSRSP 188
>gi|31249706|gb|AAP46199.1| putative splicing factor [Oryza sativa Japonica Group]
gi|108708412|gb|ABF96207.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|218192921|gb|EEC75348.1| hypothetical protein OsI_11773 [Oryza sativa Indica Group]
gi|222625002|gb|EEE59134.1| hypothetical protein OsJ_11026 [Oryza sativa Japonica Group]
Length = 217
Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/128 (84%), Positives = 115/128 (89%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFG 62
GR Y Y PSPPR+Y RR RSPSPRG YGGR RDLPTSLLVRNLR DCRP+DLR PFG+FG
Sbjct: 2 GRGYDYGPSPPREYRRRARSPSPRGRYGGRDRDLPTSLLVRNLRRDCRPDDLRRPFGKFG 61
Query: 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 122
R+KDIYLPRDYYTGEPRGFGF+QY DP DAADAKYHMDG +LLGRE+TVVFAEENRKKPS
Sbjct: 62 RVKDIYLPRDYYTGEPRGFGFIQYYDPEDAADAKYHMDGQILLGREVTVVFAEENRKKPS 121
Query: 123 EMRARERF 130
EMRARER
Sbjct: 122 EMRARERV 129
>gi|357462657|ref|XP_003601610.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355490658|gb|AES71861.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|388503978|gb|AFK40055.1| unknown [Medicago truncatula]
Length = 248
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/214 (60%), Positives = 142/214 (66%), Gaps = 31/214 (14%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGH-----YGGRGRDLPTSLLVRNLRHDCRPEDLR 55
MRGRSYS PSPP Y RR R Y R DLPTSLLVRNLRHDCRPEDLR
Sbjct: 1 MRGRSYS--PSPPPRYSRRGGGGGGRSPSPRRRYAPRQSDLPTSLLVRNLRHDCRPEDLR 58
Query: 56 GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115
PFG FG LKDIYLP+DYYTG+PRGFGF+Q++DPADAADAKYHMDG +LLGRE+TVVFAE
Sbjct: 59 RPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGREITVVFAE 118
Query: 116 ENRKKPSEMRARERFSRSYDGRRS------------PPRYSRSPHYARGYSRSPDYYSPP 163
ENRKKP+EMR RER S GR S P P + S DY+SPP
Sbjct: 119 ENRKKPTEMRVRERSS----GRHSDRRRSPPRYSRSPRYSRSPPRHRSRSRGSRDYHSPP 174
Query: 164 PRRGRDSRSISPRYRRY--------RERSYSRSP 189
P+R SRS+SP RR+ RERSYSRSP
Sbjct: 175 PKRREYSRSVSPEDRRHSREGSQHSRERSYSRSP 208
>gi|212723388|ref|NP_001131976.1| Splicing factor, arginine/serine-rich 2 [Zea mays]
gi|194693082|gb|ACF80625.1| unknown [Zea mays]
gi|195620736|gb|ACG32198.1| splicing factor, arginine/serine-rich 2 [Zea mays]
gi|413955616|gb|AFW88265.1| Splicing factor, arginine/serine-rich 2 [Zea mays]
gi|448878236|gb|AGE46081.1| arginine/serine-rich splicing factor SCL25A transcript I [Zea mays]
Length = 216
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 137/211 (64%), Positives = 153/211 (72%), Gaps = 16/211 (7%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRG--RDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
GRSY++SPSPPR Y RR RSPSPRG YGGR RDLPTSLLVRNLR DCRP+DLR PFG+
Sbjct: 2 GRSYNHSPSPPRGYRRRTRSPSPRGRYGGRDTDRDLPTSLLVRNLRRDCRPDDLRRPFGK 61
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG +KDIYLP+DYYT EPRGFGF+QY DP DA+DAKY+MDG +LLGRE+ VVFAEENRKK
Sbjct: 62 FGPVKDIYLPKDYYTREPRGFGFIQYFDPEDASDAKYYMDGKMLLGREIAVVFAEENRKK 121
Query: 121 PSEMRARERFS---RSYDGRRSPPRYSRSPHY----ARGYSRSPDYYSPPPRRGRDSRSI 173
PS+MRARE+ S RSYDGR SRSP YSP P+R SRS
Sbjct: 122 PSDMRAREKISGRGRSYDGRLR----SRSPGLNGSPRGRSRSQSRSYSPAPKRKHYSRSP 177
Query: 174 SPRYRRYRERSYSRSPYGSRSYSPSRSRSRS 204
+P R RERS SRSP +RS S S SRS
Sbjct: 178 AP---RPRERSLSRSPAVNRSRSASPIVSRS 205
>gi|222637522|gb|EEE67654.1| hypothetical protein OsJ_25252 [Oryza sativa Japonica Group]
Length = 388
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/144 (74%), Positives = 115/144 (79%), Gaps = 12/144 (8%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
SP PR YGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGRLKDIY+PRDYY+GEPRGF
Sbjct: 197 SPIPRDRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGRLKDIYIPRDYYSGEPRGF 256
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPP 141
GFVQY DP DAADAKY+MDG ++LGRE+ VVFAEENRKKPSEMR+R+R S S GR
Sbjct: 257 GFVQYYDPDDAADAKYYMDGQVILGREVAVVFAEENRKKPSEMRSRDRISGSR-GRSYDQ 315
Query: 142 RYSRSPHYARGYSRSPDYYSPPPR 165
RYSRSP YSPPPR
Sbjct: 316 RYSRSPR-----------YSPPPR 328
>gi|242046420|ref|XP_002461081.1| hypothetical protein SORBIDRAFT_02g040350 [Sorghum bicolor]
gi|241924458|gb|EER97602.1| hypothetical protein SORBIDRAFT_02g040350 [Sorghum bicolor]
gi|448878346|gb|AGE46136.1| arginine/serine-rich splicing factor SCL25B transcript I [Sorghum
bicolor]
gi|448878348|gb|AGE46137.1| arginine/serine-rich splicing factor SCL25B transcript II [Sorghum
bicolor]
Length = 209
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/127 (85%), Positives = 115/127 (90%)
Query: 4 RSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR 63
R YSYSPSPPR Y RR RSPSPR +YGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGR
Sbjct: 3 RGYSYSPSPPRGYRRRERSPSPRDYYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGR 62
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
LKDIYLPRDYYTGEPRGFGFVQY DP DAADAKY+MDG ++LGR++TVVFAEENRKKP E
Sbjct: 63 LKDIYLPRDYYTGEPRGFGFVQYYDPDDAADAKYYMDGQVVLGRQITVVFAEENRKKPQE 122
Query: 124 MRARERF 130
MRAR+R
Sbjct: 123 MRARDRV 129
>gi|218200082|gb|EEC82509.1| hypothetical protein OsI_26989 [Oryza sativa Indica Group]
Length = 216
Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/144 (74%), Positives = 115/144 (79%), Gaps = 12/144 (8%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
SP PR YGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGRLKDIY+PRDYY+GEPRGF
Sbjct: 25 SPIPRDRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGRLKDIYIPRDYYSGEPRGF 84
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPP 141
GFVQY DP DAADAKY+MDG ++LGRE+ VVFAEENRKKPSEMR+R+R S S GR
Sbjct: 85 GFVQYYDPDDAADAKYYMDGQVILGREVAVVFAEENRKKPSEMRSRDRISGSR-GRSYDQ 143
Query: 142 RYSRSPHYARGYSRSPDYYSPPPR 165
RYSRSP YSPPPR
Sbjct: 144 RYSRSPR-----------YSPPPR 156
>gi|448878352|gb|AGE46139.1| arginine/serine-rich splicing factor SCL25B transcript IV [Sorghum
bicolor]
Length = 174
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/127 (85%), Positives = 115/127 (90%)
Query: 4 RSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR 63
R YSYSPSPPR Y RR RSPSPR +YGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGR
Sbjct: 3 RGYSYSPSPPRGYRRRERSPSPRDYYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGR 62
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
LKDIYLPRDYYTGEPRGFGFVQY DP DAADAKY+MDG ++LGR++TVVFAEENRKKP E
Sbjct: 63 LKDIYLPRDYYTGEPRGFGFVQYYDPDDAADAKYYMDGQVVLGRQITVVFAEENRKKPQE 122
Query: 124 MRARERF 130
MRAR+R
Sbjct: 123 MRARDRV 129
>gi|115473547|ref|NP_001060372.1| Os07g0633200 [Oryza sativa Japonica Group]
gi|33146902|dbj|BAC79901.1| putative SC35-like splicing factor SCL30a [Oryza sativa Japonica
Group]
gi|113611908|dbj|BAF22286.1| Os07g0633200 [Oryza sativa Japonica Group]
gi|215692446|dbj|BAG87866.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 213
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/144 (74%), Positives = 115/144 (79%), Gaps = 12/144 (8%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
SP PR YGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGRLKDIY+PRDYY+GEPRGF
Sbjct: 22 SPIPRDRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGRLKDIYIPRDYYSGEPRGF 81
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPP 141
GFVQY DP DAADAKY+MDG ++LGRE+ VVFAEENRKKPSEMR+R+R S S GR
Sbjct: 82 GFVQYYDPDDAADAKYYMDGQVILGREVAVVFAEENRKKPSEMRSRDRISGSR-GRSYDQ 140
Query: 142 RYSRSPHYARGYSRSPDYYSPPPR 165
RYSRSP YSPPPR
Sbjct: 141 RYSRSPR-----------YSPPPR 153
>gi|356553015|ref|XP_003544854.1| PREDICTED: uncharacterized protein LOC100775883 isoform 1 [Glycine
max]
gi|356553017|ref|XP_003544855.1| PREDICTED: uncharacterized protein LOC100775883 isoform 2 [Glycine
max]
Length = 249
Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 125/185 (67%), Positives = 132/185 (71%), Gaps = 20/185 (10%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
+DLPTSLLVRNLRHDCRPEDLR PFGQFG LKDIYLP+DYYTGEPRGFGFVQY+DPADAA
Sbjct: 37 QDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAA 96
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE-------RFSRSYDGRRSPPRYSRS 146
DAKYHMDG +LLGRELTVVFAEENRKKP+EMR RE R RSP
Sbjct: 97 DAKYHMDGQVLLGRELTVVFAEENRKKPTEMRTRERRGRFYDRRRSPPRYSRSPRYSRSP 156
Query: 147 PHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRY----------RERSYSRSP---YGSR 193
P R SRS DYYSPP +R SRS+SP RRY RERSYSRSP GSR
Sbjct: 157 PPRHRSRSRSRDYYSPPAKRREYSRSVSPEDRRYSRERSFSQHSRERSYSRSPPYNGGSR 216
Query: 194 SYSPS 198
S S S
Sbjct: 217 SRSQS 221
>gi|358248974|ref|NP_001239716.1| uncharacterized protein LOC100816913 [Glycine max]
gi|255645650|gb|ACU23319.1| unknown [Glycine max]
Length = 205
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 117/162 (72%), Positives = 127/162 (78%), Gaps = 12/162 (7%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
S SPRG Y G RDLPTSLLVRNL DCRPEDL GPFGQFG LKD+YLPRDYYTGEPRGF
Sbjct: 24 SLSPRGRYRGCDRDLPTSLLVRNLNRDCRPEDLHGPFGQFGPLKDVYLPRDYYTGEPRGF 83
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE-RFSRSYDGRRSP 140
GFVQY+DPADAADAKYHMDG +LLGRE+TVVFAEENRKKP+EMRARE R RS+D RRS
Sbjct: 84 GFVQYVDPADAADAKYHMDGRILLGREITVVFAEENRKKPAEMRAREHRRDRSHDYRRS- 142
Query: 141 PRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRYRE 182
SR+ + YS S PRR R RSISPR R+YR+
Sbjct: 143 ---SRTYSPSPDYSPS-------PRRRRHYRSISPRDRKYRD 174
>gi|255644989|gb|ACU22994.1| unknown [Glycine max]
Length = 214
Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 141/211 (66%), Positives = 150/211 (71%), Gaps = 24/211 (11%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGR-----GRDLPTSLLVRNLRHDCRPEDLR 55
MRGRSYS PSPP + RR G +DLPTSLLVRNLRHDCRPEDLR
Sbjct: 1 MRGRSYS--PSPPPRHSRRGGGGRSPSPRGRYPPRPRQQDLPTSLLVRNLRHDCRPEDLR 58
Query: 56 GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115
PFGQFG LKDIYLP+DYYTGEPRGFGFVQY+DPADAADAKYHMDG +LLGRELTVVFAE
Sbjct: 59 RPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAE 118
Query: 116 ENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYSRSP-------DYYSPPPRRGR 168
ENRKKP+EMR RER R YD RRSPPRYSRSP Y+R DYYSPP +R
Sbjct: 119 ENRKKPTEMRTRERRGRFYDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPAKRRE 178
Query: 169 DSRSISPRYRRY----------RERSYSRSP 189
SRS+SP RRY RERSYSRSP
Sbjct: 179 YSRSVSPEDRRYSRERSFSQHSRERSYSRSP 209
>gi|363807232|ref|NP_001242100.1| uncharacterized protein LOC100779321 [Glycine max]
gi|255635455|gb|ACU18080.1| unknown [Glycine max]
Length = 253
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/207 (60%), Positives = 138/207 (66%), Gaps = 38/207 (18%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
+DLPTSLLVRNLRHDCRPEDLR PFGQFG LKDIYLP+DYYTGEPRGFGFVQ++DPADAA
Sbjct: 37 QDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQFVDPADAA 96
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE---------------RFSRSYDGRR 138
DAKYHMDG +LLGRELTVVFAEENRKKP+EMR RE S Y
Sbjct: 97 DAKYHMDGQVLLGRELTVVFAEENRKKPTEMRTRERRGRFSDRRRSPPRYSRSPRYSRSP 156
Query: 139 SPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRY----------RERSYSRS 188
R H +R +SR DYYS P+R SRS+SP RRY RERS+SRS
Sbjct: 157 RYSRSPPPRHRSRSHSR--DYYS--PKRREYSRSVSPEGRRYSRERSYSQHNRERSFSRS 212
Query: 189 P---YGSRSYS------PSRSRSRSLD 206
P GSRS S P RSRS SL+
Sbjct: 213 PPYNGGSRSRSQSPAKGPGRSRSPSLN 239
>gi|242035637|ref|XP_002465213.1| hypothetical protein SORBIDRAFT_01g034200 [Sorghum bicolor]
gi|241919067|gb|EER92211.1| hypothetical protein SORBIDRAFT_01g034200 [Sorghum bicolor]
gi|448878340|gb|AGE46133.1| arginine/serine-rich splicing factor SCL25A transcript I [Sorghum
bicolor]
gi|448878342|gb|AGE46134.1| arginine/serine-rich splicing factor SCL25A transcript II [Sorghum
bicolor]
Length = 213
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 139/198 (70%), Positives = 151/198 (76%), Gaps = 22/198 (11%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFG 62
GRSY YSPSPPR Y RR RSPSPRG YGGRGRDLPTSLLVRNLR DCRP+DLR PFG+FG
Sbjct: 2 GRSYDYSPSPPRGYRRRTRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPDDLRRPFGKFG 61
Query: 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 122
R+KDIYLP+DYYT EP+GFGF+QY DP DA+DAKYHMDG +LLGRE+TVVFAEENRKKPS
Sbjct: 62 RVKDIYLPKDYYTREPKGFGFIQYFDPEDASDAKYHMDGQMLLGREITVVFAEENRKKPS 121
Query: 123 EMRARERF---SRSYDGRRSPPRYSRSPHYARGYSRSP--------DYYSPPPRRGRDSR 171
+MRARER SRSYD R SRSP GYS SP +SP P+R SR
Sbjct: 122 DMRARERMSGRSRSYDRRLR----SRSP----GYSDSPRGRSRSHSPSHSPAPKRKHYSR 173
Query: 172 SISPRYRRYRERSYSRSP 189
S SP R RERS SRSP
Sbjct: 174 SPSP---RPRERSMSRSP 188
>gi|357112219|ref|XP_003557907.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Brachypodium
distachyon]
Length = 219
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/206 (65%), Positives = 146/206 (70%), Gaps = 10/206 (4%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFG 62
GRSY YSPSPPR Y RR RSPSPRG YGGRGRDLPTSLLVRNLR DCRP+DLR PFG+FG
Sbjct: 2 GRSYDYSPSPPRGYRRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPDDLRRPFGKFG 61
Query: 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 122
RLKDIYLPRDYYT EPRGFGF+QY DP DAADA+YHMDG +LLGRE+ VVFAEENRKKP
Sbjct: 62 RLKDIYLPRDYYTQEPRGFGFIQYYDPEDAADAQYHMDGQILLGREVAVVFAEENRKKPF 121
Query: 123 EMRARERF-----SRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRY 177
EMR RER S R S SP Y+ SP P+R SRS +
Sbjct: 122 EMRTRERTSSRGRSYDRRSRSPRRGRSVSPGYSDRSRSRSQSKSPAPKRKHHSRSPA--- 178
Query: 178 RRYRERSYSRSPYGSRSYSPSRSRSR 203
+RERS+SRSP SRS S S S R
Sbjct: 179 --HRERSFSRSPADSRSRSGSPSEDR 202
>gi|255582554|ref|XP_002532060.1| serine/arginine rich splicing factor, putative [Ricinus communis]
gi|223528264|gb|EEF30315.1| serine/arginine rich splicing factor, putative [Ricinus communis]
Length = 246
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/150 (74%), Positives = 121/150 (80%), Gaps = 3/150 (2%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
DLPTSLLVRNLRHDCRPEDLR PF QFG LKDIYLPRDYYTGEPRGFGFVQY DP DAA+
Sbjct: 39 DLPTSLLVRNLRHDCRPEDLRRPFEQFGALKDIYLPRDYYTGEPRGFGFVQYADPQDAAE 98
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEM--RARERFSRSYDGRRSPPRYSRSPHYARG 152
AK+HMDG +LLGRELTVVFAEENRKKP +M R R R D RRSPPRYSRSP
Sbjct: 99 AKHHMDGRVLLGRELTVVFAEENRKKPVDMRARERAGRGRFRDRRRSPPRYSRSPPPRYA 158
Query: 153 YSRSPDYYSPPPRRGRDSRSISPRYRRYRE 182
SRS DY SPPP+R R S+SISP+ +RY +
Sbjct: 159 RSRSHDYGSPPPKR-RYSKSISPQGKRYSQ 187
>gi|116782736|gb|ABK22635.1| unknown [Picea sitchensis]
Length = 275
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 125/192 (65%), Gaps = 26/192 (13%)
Query: 9 SPSPPR-DYGRRYRSPSPRGHYGGRGRDLP-TSLLVRNLRHDCRPEDLRGPFGQFGRLKD 66
S SPPR YG R RSP + G GR P TSLLVRN+ DCR ++LR PF +FG LKD
Sbjct: 5 SLSPPRRGYGVRARSPPRGRYGGYGGRREPNTSLLVRNIPRDCRSDELRMPFERFGPLKD 64
Query: 67 IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRA 126
+YLP+D+YTGEPRGFGFVQ++DP DAA+A+YHMDG + GRE+TVV AE+NRKKP EMR
Sbjct: 65 VYLPKDFYTGEPRGFGFVQFMDPQDAAEAQYHMDGQYIGGREITVVLAEKNRKKPDEMRV 124
Query: 127 RE--RFSRSYDGRRSPPRYSRSPHYARGYS-------RSPDY--------YSPPPRRGRD 169
R R R Y RR RSPHYAR S RS Y YSP PRRG D
Sbjct: 125 RTSARAPRGYGRRR------RSPHYARSRSRSRSLEHRSTSYRGGHRSRSYSPVPRRGHD 178
Query: 170 SRSISPRYRRYR 181
S+SPR R +R
Sbjct: 179 Y-SVSPRDRHHR 189
>gi|168044871|ref|XP_001774903.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673797|gb|EDQ60315.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 257
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 125/197 (63%), Gaps = 14/197 (7%)
Query: 1 MRGRSYSYSPSPPRDY---GRRYRSPSPRGHYGGRGRD--LPTSLLVRNLRHDCRPEDLR 55
MRGRS SPPR G R RSPSPRG GG GRD P+SLLVRN+ DC EDLR
Sbjct: 1 MRGRS-PLGHSPPRRSHGGGNRRRSPSPRGGRGGYGRDSTEPSSLLVRNIPRDCSAEDLR 59
Query: 56 GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115
PF ++G +KD+YLPRDYYTG+PRGFGFVQ+++P DAA+A+Y +D L+ GRE+TVVFAE
Sbjct: 60 IPFERYGVVKDVYLPRDYYTGQPRGFGFVQFLEPRDAAEAQYCLDHQLIQGREITVVFAE 119
Query: 116 ENRKKPSEMRARERF--SRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRD---- 169
ENRKKP EMR +ER +RS R SRSP R + R SP P R R
Sbjct: 120 ENRKKPQEMRTKERIRPARSPSPGRENNAPSRSPSAVRSHRRRTGERSPMPSRERSPALP 179
Query: 170 --SRSISPRYRRYRERS 184
SR PR R RS
Sbjct: 180 RRSRDGEPRARELEPRS 196
>gi|448878427|gb|AGE46176.1| arginine/serine-rich splicing factor SCL42 transcript I
[Physcomitrella patens subsp. patens]
Length = 370
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/135 (63%), Positives = 102/135 (75%), Gaps = 6/135 (4%)
Query: 1 MRGRSYSYSPSPPRDY---GRRYRSPSPRGHYGGRGRD--LPTSLLVRNLRHDCRPEDLR 55
MRGRS SPPR G R RSPSPRG GG GRD P+SLLVRN+ DC EDLR
Sbjct: 1 MRGRS-PLGHSPPRRSHGGGNRRRSPSPRGGRGGYGRDSTEPSSLLVRNIPRDCSAEDLR 59
Query: 56 GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115
PF ++G +KD+YLPRDYYTG+PRGFGFVQ+++P DAA+A+Y +D L+ GRE+TVVFAE
Sbjct: 60 IPFERYGVVKDVYLPRDYYTGQPRGFGFVQFLEPRDAAEAQYCLDHQLIQGREITVVFAE 119
Query: 116 ENRKKPSEMRARERF 130
ENRKKP EMR +ER
Sbjct: 120 ENRKKPQEMRTKERI 134
>gi|448878421|gb|AGE46173.1| arginine/serine-rich splicing factor SCL33 transcript I
[Physcomitrella patens subsp. patens]
Length = 286
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 78/94 (82%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PTSLLVRN+ DC +DLR PF ++G +KD+YLPRDYYTG PRGFGFVQ+++P DAA+A+
Sbjct: 55 PTSLLVRNIPRDCTADDLRIPFERYGVVKDVYLPRDYYTGLPRGFGFVQFLEPRDAAEAQ 114
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERF 130
Y +D L+ GRE+TVVFAEENRKKP EMR +ER
Sbjct: 115 YCLDHQLIAGREITVVFAEENRKKPQEMRIKERI 148
>gi|168056094|ref|XP_001780057.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668555|gb|EDQ55160.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 78/94 (82%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PTSLLVRN+ DC +DLR PF ++G +KD+YLPRDYYTG PRGFGFVQ+++P DAA+A+
Sbjct: 55 PTSLLVRNIPRDCTADDLRIPFERYGVVKDVYLPRDYYTGLPRGFGFVQFLEPRDAAEAQ 114
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERF 130
Y +D L+ GRE+TVVFAEENRKKP EMR +ER
Sbjct: 115 YCLDHQLIAGREITVVFAEENRKKPQEMRIKERI 148
>gi|448878423|gb|AGE46174.1| arginine/serine-rich splicing factor SCL33 transcript II
[Physcomitrella patens subsp. patens]
Length = 248
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 78/94 (82%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PTSLLVRN+ DC +DLR PF ++G +KD+YLPRDYYTG PRGFGFVQ+++P DAA+A+
Sbjct: 55 PTSLLVRNIPRDCTADDLRIPFERYGVVKDVYLPRDYYTGLPRGFGFVQFLEPRDAAEAQ 114
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERF 130
Y +D L+ GRE+TVVFAEENRKKP EMR +ER
Sbjct: 115 YCLDHQLIAGREITVVFAEENRKKPQEMRIKERI 148
>gi|222622536|gb|EEE56668.1| hypothetical protein OsJ_06104 [Oryza sativa Japonica Group]
Length = 304
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 3/126 (2%)
Query: 8 YSP---SPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64
YSP SPPR PR YGGR SLLVRN+ CR EDLR PF +FG +
Sbjct: 43 YSPPYRSPPRRGYGGRGRSPPRRGYGGRKEQGSGSLLVRNIPLSCRAEDLRVPFERFGPV 102
Query: 65 KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
+D+YLP+DYYTGEPRGF FV+++DP DA++A+YHM+ ++ GRE+TVV A E+RK+P EM
Sbjct: 103 RDVYLPKDYYTGEPRGFAFVEFVDPYDASEAQYHMNRQVVFGREITVVLAAESRKRPEEM 162
Query: 125 RARERF 130
R+R R
Sbjct: 163 RSRARV 168
>gi|225449547|ref|XP_002283722.1| PREDICTED: uncharacterized protein LOC100258210 [Vitis vinifera]
Length = 276
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 94/142 (66%), Gaps = 20/142 (14%)
Query: 18 RRYRSP---SPRGHYGGRGRDLPT---------------SLLVRNLRHDCRPEDLRGPFG 59
RRY P +PR YGGR R P SLLVRN+ +CRPEDLR PF
Sbjct: 2 RRYSPPYYSAPRRGYGGRERSPPRRGYGGYGRRKEQNHGSLLVRNIPLNCRPEDLRVPFE 61
Query: 60 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 119
+FG ++D+YLP+DYYTGEPRGF FVQ++DP +A++A+YHM+G + GRE++VV A E RK
Sbjct: 62 RFGLVRDVYLPKDYYTGEPRGFAFVQFVDPYEASEAQYHMNGQIFAGREISVVVAAETRK 121
Query: 120 KPSEMRARERF--SRSYDGRRS 139
+P EMR R R SY GRRS
Sbjct: 122 RPEEMRTRARVRGPSSYGGRRS 143
>gi|218190416|gb|EEC72843.1| hypothetical protein OsI_06591 [Oryza sativa Indica Group]
Length = 289
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 3/126 (2%)
Query: 8 YSP---SPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64
YSP SPPR PR YGGR SLLVRN+ CR EDLR PF +FG +
Sbjct: 28 YSPPYRSPPRRGYGGRGRSPPRRGYGGRKEQGSGSLLVRNIPLSCRAEDLRVPFERFGPV 87
Query: 65 KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
+D+YLP+DYYTGEPRGF FV+++DP DA++A+YHM+ ++ GRE+TVV A E+RK+P EM
Sbjct: 88 RDVYLPKDYYTGEPRGFAFVEFVDPYDASEAQYHMNRQVVFGREITVVLAAESRKRPEEM 147
Query: 125 RARERF 130
R+R R
Sbjct: 148 RSRARV 153
>gi|115445337|ref|NP_001046448.1| Os02g0252100 [Oryza sativa Japonica Group]
gi|47497118|dbj|BAD19168.1| putative pre-mRNA splicing factor [Oryza sativa Japonica Group]
gi|47497696|dbj|BAD19762.1| putative pre-mRNA splicing factor [Oryza sativa Japonica Group]
gi|66394215|gb|AAG43284.2| pre-mRNA splicing factor [Oryza sativa]
gi|113535979|dbj|BAF08362.1| Os02g0252100 [Oryza sativa Japonica Group]
gi|215704460|dbj|BAG93894.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 3/126 (2%)
Query: 8 YSP---SPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64
YSP SPPR PR YGGR SLLVRN+ CR EDLR PF +FG +
Sbjct: 4 YSPPYRSPPRRGYGGRGRSPPRRGYGGRKEQGSGSLLVRNIPLSCRAEDLRVPFERFGPV 63
Query: 65 KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
+D+YLP+DYYTGEPRGF FV+++DP DA++A+YHM+ ++ GRE+TVV A E+RK+P EM
Sbjct: 64 RDVYLPKDYYTGEPRGFAFVEFVDPYDASEAQYHMNRQVVFGREITVVLAAESRKRPEEM 123
Query: 125 RARERF 130
R+R R
Sbjct: 124 RSRARV 129
>gi|296086246|emb|CBI31687.3| unnamed protein product [Vitis vinifera]
Length = 353
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 94/142 (66%), Gaps = 20/142 (14%)
Query: 18 RRYRSP---SPRGHYGGRGRDLPT---------------SLLVRNLRHDCRPEDLRGPFG 59
RRY P +PR YGGR R P SLLVRN+ +CRPEDLR PF
Sbjct: 79 RRYSPPYYSAPRRGYGGRERSPPRRGYGGYGRRKEQNHGSLLVRNIPLNCRPEDLRVPFE 138
Query: 60 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 119
+FG ++D+YLP+DYYTGEPRGF FVQ++DP +A++A+YHM+G + GRE++VV A E RK
Sbjct: 139 RFGLVRDVYLPKDYYTGEPRGFAFVQFVDPYEASEAQYHMNGQIFAGREISVVVAAETRK 198
Query: 120 KPSEMRARERF--SRSYDGRRS 139
+P EMR R R SY GRRS
Sbjct: 199 RPEEMRTRARVRGPSSYGGRRS 220
>gi|302760651|ref|XP_002963748.1| hypothetical protein SELMODRAFT_79810 [Selaginella moellendorffii]
gi|300169016|gb|EFJ35619.1| hypothetical protein SELMODRAFT_79810 [Selaginella moellendorffii]
Length = 100
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Query: 48 DC-RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 106
DC RPED+RGPF QFG +KD+YLP+D+YTGEPRGFGFVQY++P DAA AK+HMD +L G
Sbjct: 3 DCHRPEDVRGPFEQFGHIKDVYLPKDFYTGEPRGFGFVQYMNPEDAARAKHHMDRQVLGG 62
Query: 107 RELTVVFAEENRKKPSEMRARERFSRSYD 135
RE+TVVFAEENRKKPSEMR + R +D
Sbjct: 63 REITVVFAEENRKKPSEMRMKSRVRSVFD 91
>gi|302782525|ref|XP_002973036.1| hypothetical protein SELMODRAFT_8400 [Selaginella moellendorffii]
gi|302805506|ref|XP_002984504.1| hypothetical protein SELMODRAFT_8401 [Selaginella moellendorffii]
gi|300147892|gb|EFJ14554.1| hypothetical protein SELMODRAFT_8401 [Selaginella moellendorffii]
gi|300159637|gb|EFJ26257.1| hypothetical protein SELMODRAFT_8400 [Selaginella moellendorffii]
Length = 93
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 78/92 (84%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PTSLLVRN+ D R +DLRGPF ++G +KD+YLP+D+Y+GEPRGFGFVQ+IDP DA +A+
Sbjct: 2 PTSLLVRNISRDTRADDLRGPFERYGAVKDVYLPKDFYSGEPRGFGFVQFIDPRDAIEAQ 61
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
Y M+ L+ GRE++VVFAEE RKKP+EMR +E
Sbjct: 62 YKMNHQLIRGREVSVVFAEETRKKPAEMRMKE 93
>gi|302786120|ref|XP_002974831.1| hypothetical protein SELMODRAFT_102070 [Selaginella moellendorffii]
gi|300157726|gb|EFJ24351.1| hypothetical protein SELMODRAFT_102070 [Selaginella moellendorffii]
Length = 95
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 73/86 (84%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109
RPED+RGPF QFG +KD+YLP+D+YTGEPRGFGFVQY++P DAA AK+HMD +L GRE+
Sbjct: 1 RPEDVRGPFEQFGHIKDVYLPKDFYTGEPRGFGFVQYMNPEDAARAKHHMDRQVLGGREI 60
Query: 110 TVVFAEENRKKPSEMRARERFSRSYD 135
TVVFAEENRKKPSEMR + R +D
Sbjct: 61 TVVFAEENRKKPSEMRMKSRVRSVFD 86
>gi|115489208|ref|NP_001067091.1| Os12g0572400 [Oryza sativa Japonica Group]
gi|77556878|gb|ABA99674.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649598|dbj|BAF30110.1| Os12g0572400 [Oryza sativa Japonica Group]
gi|215694562|dbj|BAG89555.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222617335|gb|EEE53467.1| hypothetical protein OsJ_36595 [Oryza sativa Japonica Group]
Length = 263
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/179 (51%), Positives = 111/179 (62%), Gaps = 15/179 (8%)
Query: 8 YSP---SPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64
YSP SPPR PR YGGR SLLVRN+ CR EDLR PF +FG +
Sbjct: 4 YSPPYRSPPRRGYGGRGRSPPRRGYGGRREQGSGSLLVRNIPLSCRGEDLRVPFERFGPV 63
Query: 65 KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
+D+YLP+DYY+GEPRGF FV+++DP DA++A+YHM+ + GRE+TVV A E+RK+P EM
Sbjct: 64 RDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEEM 123
Query: 125 RARERFSRSYDGRR--------SPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISP 175
R+R R R Y G SRSPHY RG RS YSP PRR RD S SP
Sbjct: 124 RSRARV-RGYSGNEGRRSSYYGRSRSRSRSPHY-RGRPRS-RSYSPAPRR-RDDYSASP 178
>gi|218187112|gb|EEC69539.1| hypothetical protein OsI_38819 [Oryza sativa Indica Group]
Length = 263
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 90/132 (68%), Gaps = 4/132 (3%)
Query: 8 YSP---SPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64
YSP SPPR PR YGGR SLLVRN+ CR EDLR PF +FG +
Sbjct: 4 YSPPYRSPPRRGYGGRGRSPPRRGYGGRREQGSGSLLVRNIPLSCRGEDLRVPFERFGPV 63
Query: 65 KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
+D+YLP+DYY+GEPRGF FV+++DP DA++A+YHM+ + GRE+TVV A E+RK+P EM
Sbjct: 64 RDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEEM 123
Query: 125 RARERFSRSYDG 136
R+R R R Y G
Sbjct: 124 RSRARV-RGYSG 134
>gi|326510839|dbj|BAJ91767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/132 (54%), Positives = 89/132 (67%), Gaps = 4/132 (3%)
Query: 8 YSP---SPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64
YSP SPPR PR YGGR SLLVRN+ CRPEDLR PF +FG +
Sbjct: 4 YSPQYRSPPRRGYGGRGRSPPRRGYGGRREQGSGSLLVRNIPLSCRPEDLRVPFERFGPV 63
Query: 65 KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
+D+YLP+DYYT EPRGF FV+++DP DA+DA+YH++ L GRE+TVV A E+RK+P +M
Sbjct: 64 RDVYLPKDYYTREPRGFAFVEFVDPYDASDAQYHLNRSLFFGREITVVVAAESRKRPDDM 123
Query: 125 RARERFSRSYDG 136
R R R R Y G
Sbjct: 124 RNRARV-RGYSG 134
>gi|356553842|ref|XP_003545260.1| PREDICTED: uncharacterized protein LOC100792397 [Glycine max]
Length = 271
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 82/108 (75%), Gaps = 3/108 (2%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SLLVRN+ DCRPE+LR PF +FG ++D+Y+P+DYY+GEPRGF FVQ++DP DA++
Sbjct: 37 DSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASE 96
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE---RFSRSYDGRRS 139
A+YHM+ + GRE++VV AEE RK+P EMR R R SY GRRS
Sbjct: 97 AQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTSRFRGPASYGGRRS 144
>gi|449459926|ref|XP_004147697.1| PREDICTED: uncharacterized protein LOC101221788 [Cucumis sativus]
Length = 286
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLVRN+ DCRPE+LR PF +FG ++D+Y+P+DYYTGEPRGF FV+++DP +A++A+YH
Sbjct: 52 SLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYH 111
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRS-YDGRRS 139
M+G GRE+TVV A E+RK+P +MR R R S Y GRRS
Sbjct: 112 MNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRS 153
>gi|118484981|gb|ABK94355.1| unknown [Populus trichocarpa]
Length = 252
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 87/123 (70%), Gaps = 5/123 (4%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ LL+RNL D RPEDLRGPF +FG LKDIYLP++Y+TGEPRGFGFV+Y DAA+AK
Sbjct: 48 SGLLIRNLPLDARPEDLRGPFEKFGPLKDIYLPKNYHTGEPRGFGFVKYRYGEDAAEAKK 107
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR---RSPPRYSRSPHYARGYS 154
MD ++ GRE+ +VFAEENRK P EMR R S + G R+PPR R H R YS
Sbjct: 108 RMDHKIIGGREIRIVFAEENRKTPQEMRRTPRTSDRHGGSHGGRTPPRSPR--HRYRSYS 165
Query: 155 RSP 157
RSP
Sbjct: 166 RSP 168
>gi|224107319|ref|XP_002314444.1| predicted protein [Populus trichocarpa]
gi|222863484|gb|EEF00615.1| predicted protein [Populus trichocarpa]
Length = 252
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 87/123 (70%), Gaps = 5/123 (4%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ LL+RNL D RPEDLRGPF +FG LKDIYLP++Y+TGEPRGFGFV+Y DAA+AK
Sbjct: 48 SGLLIRNLPLDARPEDLRGPFEKFGPLKDIYLPKNYHTGEPRGFGFVKYRYGEDAAEAKK 107
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR---RSPPRYSRSPHYARGYS 154
MD ++ GRE+ +VFAEENRK P EMR R S + G R+PPR R H R YS
Sbjct: 108 RMDHKIIGGREIRIVFAEENRKTPQEMRRTPRTSDRHGGSHGGRTPPRSPR--HRYRSYS 165
Query: 155 RSP 157
RSP
Sbjct: 166 RSP 168
>gi|449524006|ref|XP_004169014.1| PREDICTED: uncharacterized protein LOC101227075 [Cucumis sativus]
Length = 305
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLVRN+ DCRPE+LR PF +FG ++D+Y+P+DYYTGEPRGF FV+++DP +A++A+YH
Sbjct: 54 SLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYH 113
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRS-YDGRRS 139
M+G GRE+TVV A E+RK+P +MR R R S Y GRRS
Sbjct: 114 MNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRS 155
>gi|225451102|ref|XP_002265951.1| PREDICTED: uncharacterized protein LOC100262434 [Vitis vinifera]
gi|298205010|emb|CBI34317.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 77/100 (77%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P+ LLVRN+ D RPEDLR PF +FG +KD+YLP++YYTGEPRGFGFV++ + DAA+AK
Sbjct: 43 PSGLLVRNIALDARPEDLRVPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRNAEDAAEAK 102
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDG 136
+H++ ++ GRE+ +VFAEENRK P EMR R S + G
Sbjct: 103 HHLNHSVIGGREIAIVFAEENRKTPQEMRTNSRVSGRHGG 142
>gi|255551589|ref|XP_002516840.1| serine/arginine rich splicing factor, putative [Ricinus communis]
gi|223543928|gb|EEF45454.1| serine/arginine rich splicing factor, putative [Ricinus communis]
Length = 257
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 87/124 (70%), Gaps = 5/124 (4%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P+ LLVRNL D RPEDLRGPF ++G +KD+YLP++YYTGEPRGFGFV+Y DAA+AK
Sbjct: 51 PSGLLVRNLPLDARPEDLRGPFEKYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAK 110
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR---RSPPRYSRSPHYARGY 153
M+ ++ GRE+ +V+AEENRK P EMR R S + G R+PP+ R H R Y
Sbjct: 111 QRMNHKIIGGREIRIVYAEENRKTPQEMRTTARVSGRHGGSTRGRTPPKSPRRRH--RSY 168
Query: 154 SRSP 157
S SP
Sbjct: 169 SHSP 172
>gi|356499101|ref|XP_003518382.1| PREDICTED: uncharacterized protein LOC100804294 [Glycine max]
Length = 276
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 75/93 (80%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SLLVRN+ DCRPE+LR PF +FG ++D+Y+P+DYY+GEPRGF FVQ++DP DA++
Sbjct: 44 DSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASE 103
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
A+YHM+ + GRE++VV AEE RK+P EMR R
Sbjct: 104 AQYHMNRQIFAGREISVVVAEETRKRPEEMRHR 136
>gi|357160417|ref|XP_003578758.1| PREDICTED: uncharacterized protein LOC100826288 [Brachypodium
distachyon]
Length = 295
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 90/136 (66%), Gaps = 4/136 (2%)
Query: 4 RSYSYSP---SPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
R Y SP SPPR PR YGGR SLLVRN+ R EDLR PF +
Sbjct: 28 RGYGGSPPHRSPPRRGYGGRGRSPPRRGYGGRKEQGSGSLLVRNIPLSARAEDLRVPFER 87
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG ++D+YLP+DYY+GEPRGF FV+++DP DA++A+YHM+ + GRE+TVV A E+RK+
Sbjct: 88 FGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKR 147
Query: 121 PSEMRARERFSRSYDG 136
P +MR+R R R Y G
Sbjct: 148 PEDMRSRTRI-RGYSG 162
>gi|32352198|dbj|BAC78592.1| pre-mRNA splicing factor [Oryza sativa Japonica Group]
Length = 232
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 98/145 (67%), Gaps = 12/145 (8%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLVRN+ CR EDLR PF +FG ++D+YLP+DYY+GEPRGF FV+++DP DA++A+YH
Sbjct: 7 SLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYH 66
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRR--------SPPRYSRSPHYA 150
M+ + GRE+TVV A E+RK+P EMR+R R R Y G SRSPHY
Sbjct: 67 MNRQVFFGREITVVLAAESRKRPEEMRSRARV-RGYSGNEGRRSSYYGRSRSRSRSPHY- 124
Query: 151 RGYSRSPDYYSPPPRRGRDSRSISP 175
RG RS YSP PRR RD S SP
Sbjct: 125 RGRPRS-RSYSPAPRR-RDDYSASP 147
>gi|326504506|dbj|BAJ91085.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508622|dbj|BAJ95833.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 239
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 100/165 (60%), Gaps = 24/165 (14%)
Query: 13 PRDYGRRYRSPSPRGHYGGRGRD---LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYL 69
PRD RYR+ PR RG D PT LLVRN+ R ED+RGPF QFG +KD+YL
Sbjct: 36 PRD---RYRAGPPR-----RGYDRPSAPTGLLVRNISLTARLEDIRGPFEQFGPIKDVYL 87
Query: 70 PRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
PR+++T E RGFGFV++ P DAA AK M+ ++ GRE+T+VFAEENRK P EMR R R
Sbjct: 88 PRNFHTKELRGFGFVKFRHPEDAAYAKQEMNHQVICGREITIVFAEENRKTPQEMRFRTR 147
Query: 130 FSRSYDGR--------RSP----PRYSRSPHYARGYSRSPDYYSP 162
SR DG RSP P YS P R SR D YSP
Sbjct: 148 -SRHMDGNYRRRQSMSRSPRPRYPSYSPEPSPVRQNSRDRDNYSP 191
>gi|255584869|ref|XP_002533150.1| serine/arginine rich splicing factor, putative [Ricinus communis]
gi|223527045|gb|EEF29231.1| serine/arginine rich splicing factor, putative [Ricinus communis]
Length = 265
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLVRN+ DCRPE+LR PF +FG ++D+Y+P+DYYTGEPRGF FVQ++D DA +A++
Sbjct: 44 SLLVRNIPLDCRPEELRAPFERFGVVRDVYIPKDYYTGEPRGFAFVQFVDTYDAMEAQHR 103
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSR--SYDGRRS 139
M+G + GRE++VV A E RK+P EMR R R R Y GR S
Sbjct: 104 MNGQIFAGREISVVVAAETRKRPEEMRQRSRIGRPSGYGGRSS 146
>gi|224098431|ref|XP_002311171.1| predicted protein [Populus trichocarpa]
gi|222850991|gb|EEE88538.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 75/92 (81%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLVRN+ DCRPE+LRG F +FG ++D+Y+P+DY+TGEPRGFGFVQ+++P+DA +A++H
Sbjct: 45 SLLVRNIPRDCRPEELRGMFERFGVVRDVYIPKDYHTGEPRGFGFVQFVEPSDAMEAQHH 104
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERF 130
M+G + GR++ VV A E RK+P EMR R R
Sbjct: 105 MNGQVFAGRQMFVVVAAETRKRPEEMRHRTRV 136
>gi|116793427|gb|ABK26743.1| unknown [Picea sitchensis]
Length = 252
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 76/98 (77%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
LPT LLVRN+ D RPEDLR PF +FG +KD+YLP+++YT EPRGFGFV+Y + DAA+A
Sbjct: 53 LPTGLLVRNISLDARPEDLRIPFERFGPVKDVYLPKNFYTREPRGFGFVKYRNHDDAAEA 112
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRS 133
K HM+ ++ GRE+++VFAEENRK P EMRA R S
Sbjct: 113 KRHMNHQVIGGREISIVFAEENRKNPQEMRATARVRTS 150
>gi|448878226|gb|AGE46076.1| arginine/serine-rich splicing factor SCL30 transcript II [Zea mays]
Length = 259
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 101/152 (66%), Gaps = 6/152 (3%)
Query: 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
YGGR ++ SLLVRN+ R EDLR PF +FG ++D+Y+P+DYY+GEPRGF FV+++D
Sbjct: 30 YGGR-KEGSGSLLVRNIPLSVRAEDLRVPFERFGPVRDVYIPKDYYSGEPRGFAFVEFVD 88
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS--RSYDGRRS--PPRYS 144
P DA++A+YHM+ + GRE+ VV A E+RK+P EMR+R R ++GRRS R
Sbjct: 89 PYDASEAQYHMNRQVFFGREIAVVLAAESRKRPEEMRSRTRVRGYSGHEGRRSSYYGRSR 148
Query: 145 RSPHYARGYSRSPDYYSPPPRRGRDSRSISPR 176
RG RS YSP PRRG D S SPR
Sbjct: 149 SRSPRYRGRPRSSRSYSPAPRRGNDY-SASPR 179
>gi|253760757|ref|XP_002489004.1| hypothetical protein SORBIDRAFT_0514s002010 [Sorghum bicolor]
gi|241947359|gb|EES20504.1| hypothetical protein SORBIDRAFT_0514s002010 [Sorghum bicolor]
Length = 208
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Query: 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
YGGR ++ SLLVRN+ R E+LR PF +FG ++D+Y+P+DYY+GEPRGF FV+++D
Sbjct: 82 YGGRNKEGSGSLLVRNIPLSVRAEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVEFVD 141
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDG 136
P DA++A+YHM+ + GRE+ VV A E+RK+P EMR+R R R Y G
Sbjct: 142 PYDASEAQYHMNRQVFFGREIAVVLAAESRKRPEEMRSRARV-RGYSG 188
>gi|224112763|ref|XP_002316285.1| predicted protein [Populus trichocarpa]
gi|222865325|gb|EEF02456.1| predicted protein [Populus trichocarpa]
Length = 232
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLVRN+ DCRP++LRGPF +FG ++D+Y+P+DYYTGEPRGF FVQ++DP +A +A++
Sbjct: 7 SLLVRNIPLDCRPDELRGPFERFGVVRDVYIPKDYYTGEPRGFAFVQFVDPYEAMEAQHR 66
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEM--RARERFSRSYDGRRS 139
M+G + GR+++VV A E RK+P EM RAR R S+ GR S
Sbjct: 67 MNGQIFAGRQISVVLAAETRKRPEEMRHRARVRGPSSHGGRSS 109
>gi|357492235|ref|XP_003616406.1| Splicing factor, arginine/serine-rich 13A [Medicago truncatula]
gi|355517741|gb|AES99364.1| Splicing factor, arginine/serine-rich 13A [Medicago truncatula]
Length = 286
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 80/105 (76%), Gaps = 4/105 (3%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLVRN+ DCRPE+LR PF +FG ++D+Y+P+DYY+G+PRGF FVQ++D +A++A+YH
Sbjct: 48 SLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEASEAQYH 107
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSR----SYDGRRS 139
MD + GRE++VV A E RK+P EMR R SR SY G+RS
Sbjct: 108 MDRQIFAGREISVVVAAETRKRPEEMRHRTSRSRGPGGSYGGQRS 152
>gi|302760313|ref|XP_002963579.1| hypothetical protein SELMODRAFT_8343 [Selaginella moellendorffii]
gi|302799491|ref|XP_002981504.1| hypothetical protein SELMODRAFT_8339 [Selaginella moellendorffii]
gi|300150670|gb|EFJ17319.1| hypothetical protein SELMODRAFT_8339 [Selaginella moellendorffii]
gi|300168847|gb|EFJ35450.1| hypothetical protein SELMODRAFT_8343 [Selaginella moellendorffii]
Length = 79
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 70/78 (89%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109
RPE++R PF +FG +KD+YLP+DYY+GEPRGFGFVQ+I+P DAADAK++MD LL GRE+
Sbjct: 2 RPEEVRVPFEKFGPVKDVYLPKDYYSGEPRGFGFVQFIEPGDAADAKFNMDHQLLGGREI 61
Query: 110 TVVFAEENRKKPSEMRAR 127
TVVFAEENRKKPSEMR +
Sbjct: 62 TVVFAEENRKKPSEMRIK 79
>gi|357478559|ref|XP_003609565.1| Splicing factor, arginine/serine-rich 13A [Medicago truncatula]
gi|355510620|gb|AES91762.1| Splicing factor, arginine/serine-rich 13A [Medicago truncatula]
Length = 314
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
LP+ LLVRNL D RPEDLRGPF ++G +KD+YLPR+YYTGEPRGFGFV+Y DAA+A
Sbjct: 46 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEA 105
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMRA 126
K ++ ++ GRE+ +VFAEENRK P EMR
Sbjct: 106 KQQLNHTIIGGREIRIVFAEENRKTPQEMRV 136
>gi|226492712|ref|NP_001150206.1| LOC100283836 [Zea mays]
gi|195637558|gb|ACG38247.1| SR repressor protein [Zea mays]
Length = 258
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 84/113 (74%), Gaps = 3/113 (2%)
Query: 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
YGGR ++ SLLVRN+ R EDLR PF +FG ++D+Y+P+DYY+GEPRGF FV+++D
Sbjct: 30 YGGR-KEGSGSLLVRNIPLSVRAEDLRVPFERFGPVRDVYIPKDYYSGEPRGFAFVEFVD 88
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS--RSYDGRRS 139
P DA++A+YHM+ + GRE+ VV A E+RK+P EMR+R R ++GRRS
Sbjct: 89 PYDASEAQYHMNRQVFFGREIAVVLAAESRKRPEEMRSRTRVRGYSGHEGRRS 141
>gi|194699092|gb|ACF83630.1| unknown [Zea mays]
gi|448878224|gb|AGE46075.1| arginine/serine-rich splicing factor SCL30 transcript I [Zea mays]
Length = 258
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 84/113 (74%), Gaps = 3/113 (2%)
Query: 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
YGGR ++ SLLVRN+ R EDLR PF +FG ++D+Y+P+DYY+GEPRGF FV+++D
Sbjct: 30 YGGR-KEGSGSLLVRNIPLSVRAEDLRVPFERFGPVRDVYIPKDYYSGEPRGFAFVEFVD 88
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS--RSYDGRRS 139
P DA++A+YHM+ + GRE+ VV A E+RK+P EMR+R R ++GRRS
Sbjct: 89 PYDASEAQYHMNRQVFFGREIAVVLAAESRKRPEEMRSRTRVRGYSGHEGRRS 141
>gi|448878244|gb|AGE46085.1| arginine/serine-rich splicing factor SCL25B transcript II [Zea
mays]
gi|448878252|gb|AGE46089.1| arginine/serine-rich splicing factor SCL25B transcript VI [Zea
mays]
gi|448878258|gb|AGE46092.1| arginine/serine-rich splicing factor SCL25B transcript IX [Zea
mays]
Length = 84
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 65/73 (89%)
Query: 4 RSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR 63
R YSYSPSPPR Y RR RSPSP HYGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGR
Sbjct: 3 RGYSYSPSPPRGYRRRARSPSPHDHYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGR 62
Query: 64 LKDIYLPRDYYTG 76
+KDIYLPRDYYTG
Sbjct: 63 VKDIYLPRDYYTG 75
>gi|242072089|ref|XP_002451321.1| hypothetical protein SORBIDRAFT_05g027700 [Sorghum bicolor]
gi|241937164|gb|EES10309.1| hypothetical protein SORBIDRAFT_05g027700 [Sorghum bicolor]
Length = 270
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 72/90 (80%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRN+ CRPE+LR PF +FG ++D+YLPRDY+TGEPRGFGFV+++D DA++A+Y
Sbjct: 40 VSLLVRNIPLRCRPEELRVPFERFGPVRDVYLPRDYHTGEPRGFGFVEFVDAYDASEAQY 99
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
HM+ + GRE+TVV A + RK+P +MR R
Sbjct: 100 HMNRQMFAGREITVVLAADTRKRPEDMRRR 129
>gi|448878332|gb|AGE46129.1| arginine/serine-rich splicing factor SCL31 [Sorghum bicolor]
Length = 270
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 72/90 (80%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRN+ CRPE+LR PF +FG ++D+YLPRDY+TGEPRGFGFV+++D DA++A+Y
Sbjct: 40 VSLLVRNIPLRCRPEELRVPFERFGPVRDVYLPRDYHTGEPRGFGFVEFVDAYDASEAQY 99
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
HM+ + GRE+TVV A + RK+P +MR R
Sbjct: 100 HMNRQMFAGREITVVLAADTRKRPEDMRRR 129
>gi|194700364|gb|ACF84266.1| unknown [Zea mays]
Length = 267
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 72/90 (80%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRN+ CRPE+LR PF +FG ++D+YLPRDY+TGEPRGFGFV+++D DA++A+Y
Sbjct: 38 VSLLVRNIPLRCRPEELRVPFERFGPVRDVYLPRDYHTGEPRGFGFVEFVDAYDASEAQY 97
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
HM+ + GRE+TVV A + RK+P +MR R
Sbjct: 98 HMNRQMFAGREITVVLAADTRKRPEDMRRR 127
>gi|194706612|gb|ACF87390.1| unknown [Zea mays]
Length = 269
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 72/90 (80%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRN+ CRPE+LR PF +FG ++D+YLPRDY+TGEPRGFGFV+++D DA++A+Y
Sbjct: 38 VSLLVRNIPLRCRPEELRVPFERFGPVRDVYLPRDYHTGEPRGFGFVEFVDAYDASEAQY 97
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
HM+ + GRE+TVV A + RK+P +MR R
Sbjct: 98 HMNRQMFAGREITVVLAADTRKRPEDMRRR 127
>gi|363543465|ref|NP_001241742.1| SR repressor protein [Zea mays]
gi|195625068|gb|ACG34364.1| SR repressor protein [Zea mays]
Length = 269
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 71/90 (78%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRN+ CRPE+LR PF +FG ++D YLPRDY+TGEPRGFGFV+++D DA++A+Y
Sbjct: 38 VSLLVRNIPLRCRPEELRVPFERFGPVRDFYLPRDYHTGEPRGFGFVEFVDAYDASEAQY 97
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
HM+ + GRE+TVV A + RK+P +MR R
Sbjct: 98 HMNRQMFAGREITVVLAADTRKRPEDMRRR 127
>gi|388503430|gb|AFK39781.1| unknown [Medicago truncatula]
Length = 336
Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
LP+ LLVRNL D RPEDLRGPF ++G +KD+YLPR+YYTGEPRGFGFV+Y DAA A
Sbjct: 46 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAGA 105
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMRA 126
K ++ ++ GRE+ +VFAEENRK P EMR
Sbjct: 106 KQQLNHTIIGGREIRIVFAEENRKTPQEMRV 136
>gi|297829752|ref|XP_002882758.1| hypothetical protein ARALYDRAFT_897406 [Arabidopsis lyrata subsp.
lyrata]
gi|297328598|gb|EFH59017.1| hypothetical protein ARALYDRAFT_897406 [Arabidopsis lyrata subsp.
lyrata]
Length = 139
Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 66/74 (89%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFG 62
GRSYSYSPSPPR YGRRYRSPSP +Y GR RD PTSLLVRNLRHDCR +DLR PFG+FG
Sbjct: 2 GRSYSYSPSPPRSYGRRYRSPSPVDYYRGRSRDPPTSLLVRNLRHDCRQDDLRRPFGRFG 61
Query: 63 RLKDIYLPRDYYTG 76
RLKDIYLPR+YYTG
Sbjct: 62 RLKDIYLPRNYYTG 75
>gi|449432785|ref|XP_004134179.1| PREDICTED: uncharacterized protein LOC101216537 [Cucumis sativus]
gi|449495419|ref|XP_004159835.1| PREDICTED: uncharacterized LOC101216537 [Cucumis sativus]
Length = 248
Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 70/90 (77%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P+ LLVRNL D RPEDLR PF +FG +KD+YLP++YYTGEPRGFGFV++ DAA+AK
Sbjct: 49 PSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAK 108
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRA 126
++ ++ GRE+ +VFAEENRK P EMR
Sbjct: 109 QQLNHTVIGGREIRIVFAEENRKTPQEMRV 138
>gi|224102541|ref|XP_002312718.1| predicted protein [Populus trichocarpa]
gi|222852538|gb|EEE90085.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 68/89 (76%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P+ LL+RNL D RPEDLR F +FG LKDIYLP++YYTGEPRGFGFV+Y DAA+AK
Sbjct: 39 PSGLLIRNLPLDARPEDLRRSFEKFGPLKDIYLPKNYYTGEPRGFGFVKYRHSEDAAEAK 98
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMR 125
MD + GRE+ +VFAEENRK P EMR
Sbjct: 99 QRMDHKTIGGREIRIVFAEENRKTPQEMR 127
>gi|125543974|gb|EAY90113.1| hypothetical protein OsI_11679 [Oryza sativa Indica Group]
Length = 254
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PT LLVRN+ RPED+R PF QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 60 PTGLLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAK 119
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS-RSYDG 136
++ ++ GRE+++VFAEENRK P EMR R R S R DG
Sbjct: 120 QELNHQVIGGREISIVFAEENRKTPQEMRMRTRTSGRYMDG 160
>gi|255639915|gb|ACU20250.1| unknown [Glycine max]
Length = 270
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 71/91 (78%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
LP+ LLVRNL D RPEDLR PF ++G +KD+YLP++YYTGEPRGFGFV+Y DAA+A
Sbjct: 47 LPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEA 106
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMRA 126
K H++ ++ GRE+ +VFAEENRK EMR
Sbjct: 107 KQHLNHTIIGGREIRIVFAEENRKTSQEMRV 137
>gi|125586354|gb|EAZ27018.1| hypothetical protein OsJ_10948 [Oryza sativa Japonica Group]
Length = 254
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PT LLVRN+ RPED+R PF QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 60 PTGLLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAK 119
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS-RSYDG 136
++ ++ GRE+++VFAEENRK P EMR R R S R DG
Sbjct: 120 QELNHQVIGGREISIVFAEENRKTPQEMRMRTRTSGRYMDG 160
>gi|115453135|ref|NP_001050168.1| Os03g0363800 [Oryza sativa Japonica Group]
gi|108708312|gb|ABF96107.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548639|dbj|BAF12082.1| Os03g0363800 [Oryza sativa Japonica Group]
gi|215737124|dbj|BAG96053.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 243
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 72/98 (73%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PT LLVRN+ RPED+R PF QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 60 PTGLLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAK 119
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
++ ++ GRE+++VFAEENRK P EMR R R S Y
Sbjct: 120 QELNHQVIGGREISIVFAEENRKTPQEMRMRTRTSGRY 157
>gi|108708313|gb|ABF96108.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 238
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PT LLVRN+ RPED+R PF QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 60 PTGLLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAK 119
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS-RSYDG 136
++ ++ GRE+++VFAEENRK P EMR R R S R DG
Sbjct: 120 QELNHQVIGGREISIVFAEENRKTPQEMRMRTRTSGRYMDG 160
>gi|297816842|ref|XP_002876304.1| hypothetical protein ARALYDRAFT_485973 [Arabidopsis lyrata subsp.
lyrata]
gi|297322142|gb|EFH52563.1| hypothetical protein ARALYDRAFT_485973 [Arabidopsis lyrata subsp.
lyrata]
Length = 260
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 70/90 (77%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLVRN+ DCRPE+LR PF +FG ++D+Y+PRDYY+GEPRGF FV+++D DA +A+ M
Sbjct: 48 LLVRNIPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSM 107
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARER 129
+ + GRE+TVV A E+RK+P EMR + R
Sbjct: 108 NRRIFAGREITVVVASESRKRPEEMRVKTR 137
>gi|357112195|ref|XP_003557895.1| PREDICTED: uncharacterized protein LOC100829528 [Brachypodium
distachyon]
Length = 244
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 72/100 (72%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PT LLVRN+ R ED+RGPF QFG +KD+YLPR+++T E RGFGFV++ DAA AK
Sbjct: 57 PTGLLVRNISLTARLEDIRGPFEQFGPIKDVYLPRNFHTKELRGFGFVKFRYSEDAAYAK 116
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDG 136
++ ++ GRE+++VFAEENRK P EMR R R +DG
Sbjct: 117 QELNHQVICGREISIVFAEENRKTPQEMRFRTRTGGRHDG 156
>gi|115486805|ref|NP_001068546.1| Os11g0704700 [Oryza sativa Japonica Group]
gi|62733154|gb|AAX95271.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77552711|gb|ABA95508.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113645768|dbj|BAF28909.1| Os11g0704700 [Oryza sativa Japonica Group]
Length = 502
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 66/88 (75%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL CRPED++ PF +FG ++D+YLP+DY TGEPRGF FV++ +DA+ A+Y
Sbjct: 35 VSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARY 94
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
HM+ +L GRE++V FA + RK+P EMR
Sbjct: 95 HMNRKMLSGREISVAFAVQTRKRPEEMR 122
>gi|215734873|dbj|BAG95595.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 478
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 66/88 (75%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL CRPED++ PF +FG ++D+YLP+DY TGEPRGF FV++ +DA+ A+Y
Sbjct: 35 VSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARY 94
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
HM+ +L GRE++V FA + RK+P EMR
Sbjct: 95 HMNRKMLSGREISVAFAVQTRKRPEEMR 122
>gi|413950003|gb|AFW82652.1| hypothetical protein ZEAMMB73_474332 [Zea mays]
Length = 221
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 88/135 (65%), Gaps = 15/135 (11%)
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS---RS 133
EPRGFGF+QY DP DA+DAKYHMDG +LLGRE VVFAEENRKKPS+MRARE+ S RS
Sbjct: 85 EPRGFGFIQYFDPEDASDAKYHMDGKMLLGRETVVVFAEENRKKPSDMRAREKISGRGRS 144
Query: 134 YDGR---RSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSPY 190
YDGR RSP R SRS YSP ++ SRS +P RERS SRS
Sbjct: 145 YDGRLRSRSPGLNDSPRGRLRSQSRS---YSPALKQKHYSRSPAP----PRERSLSRSLA 197
Query: 191 G--SRSYSPSRSRSR 203
SRS SP SRSR
Sbjct: 198 INRSRSASPIVSRSR 212
>gi|18410283|ref|NP_567021.1| SC35-like splicing factor 30 [Arabidopsis thaliana]
gi|20466366|gb|AAM20500.1| putative RNA binding protein [Arabidopsis thaliana]
gi|21554261|gb|AAM63336.1| putative RNA binding protein [Arabidopsis thaliana]
gi|22136316|gb|AAM91236.1| putative RNA binding protein [Arabidopsis thaliana]
gi|332645866|gb|AEE79387.1| SC35-like splicing factor 30 [Arabidopsis thaliana]
Length = 262
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 69/90 (76%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLVRN+ DCRPE+LR PF +FG ++D+Y+PRDYY+G+PRGF FV+++D DA +A+ M
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARER 129
+ GRE+TVV A E+RK+P EMR + R
Sbjct: 109 NRRSFAGREITVVVASESRKRPEEMRVKTR 138
>gi|448878334|gb|AGE46130.1| arginine/serine-rich splicing factor SCL28 transcript I [Sorghum
bicolor]
Length = 241
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 71/97 (73%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ LL+RN+ RPED+R PF QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 57 SGLLIRNISLTARPEDIRVPFEQFGPIKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKQ 116
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
M+ ++ GRE+++V+AEENRK P EMR R R S Y
Sbjct: 117 EMNHQVIGGREISIVYAEENRKTPQEMRRRTRTSGRY 153
>gi|9843657|emb|CAC03602.1| SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana]
Length = 262
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 69/90 (76%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLVRN+ DCRPE+LR PF +FG ++D+Y+PRDYY+G+PRGF FV+++D DA +A+ M
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARER 129
+ GRE+TVV A E+RK+P EMR + R
Sbjct: 109 NRRSFSGREITVVVASESRKRPEEMRVKTR 138
>gi|7076789|emb|CAB75904.1| putative RNA binding protein [Arabidopsis thaliana]
Length = 309
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 69/90 (76%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLVRN+ DCRPE+LR PF +FG ++D+Y+PRDYY+G+PRGF FV+++D DA +A+ M
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARER 129
+ GRE+TVV A E+RK+P EMR + R
Sbjct: 109 NRRSFAGREITVVVASESRKRPEEMRVKTR 138
>gi|218186222|gb|EEC68649.1| hypothetical protein OsI_37086 [Oryza sativa Indica Group]
Length = 773
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 66/88 (75%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL CRPED++ PF +FG ++D+YLP+DY TGEPRGF FV++ +DA+ A+Y
Sbjct: 331 VSLFVSNLTRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARY 390
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
HM+ +L GRE++V FA + RK+P EMR
Sbjct: 391 HMNRKMLSGREISVAFAVQTRKRPEEMR 418
>gi|242040845|ref|XP_002467817.1| hypothetical protein SORBIDRAFT_01g034590 [Sorghum bicolor]
gi|241921671|gb|EER94815.1| hypothetical protein SORBIDRAFT_01g034590 [Sorghum bicolor]
Length = 190
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 71/97 (73%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ LL+RN+ RPED+R PF QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 57 SGLLIRNISLTARPEDIRVPFEQFGPIKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKQ 116
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
M+ ++ GRE+++V+AEENRK P EMR R R S Y
Sbjct: 117 EMNHQVIGGREISIVYAEENRKTPQEMRRRTRTSGRY 153
>gi|224033195|gb|ACN35673.1| unknown [Zea mays]
gi|413955617|gb|AFW88266.1| hypothetical protein ZEAMMB73_484317 [Zea mays]
gi|413955618|gb|AFW88267.1| hypothetical protein ZEAMMB73_484317 [Zea mays]
Length = 143
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 88/135 (65%), Gaps = 14/135 (10%)
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS---RS 133
EPRGFGF+QY DP DA+DAKY+MDG +LLGRE+ VVFAEENRKKPS+MRARE+ S RS
Sbjct: 5 EPRGFGFIQYFDPEDASDAKYYMDGKMLLGREIAVVFAEENRKKPSDMRAREKISGRGRS 64
Query: 134 YDGRRSPPRYSRSPHY----ARGYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSP 189
YDGR SRSP YSP P+R SRS +P R RERS SRSP
Sbjct: 65 YDGR----LRSRSPGLNGSPRGRSRSQSRSYSPAPKRKHYSRSPAP---RPRERSLSRSP 117
Query: 190 YGSRSYSPSRSRSRS 204
+RS S S SRS
Sbjct: 118 AVNRSRSASPIVSRS 132
>gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group]
Length = 864
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 66/88 (75%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL CRPED++ PF +FG ++D+YLP+DY TGEPRGF FV++ +DA+ A+Y
Sbjct: 397 VSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARY 456
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
HM+ +L GRE++V FA + RK+P EMR
Sbjct: 457 HMNRKMLSGREISVAFAVQTRKRPEEMR 484
>gi|224031575|gb|ACN34863.1| unknown [Zea mays]
Length = 240
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ LL+RN+ RPED+R F QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 57 SGLLIRNISLTARPEDIRATFEQFGPIKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKR 116
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSP 147
M ++ GRE+++V+AEENRK P EMR R R S Y R R SRSP
Sbjct: 117 EMHHQVIGGREISIVYAEENRKTPQEMRMRTRTSGRYMDERY-TRLSRSP 165
>gi|448878336|gb|AGE46131.1| arginine/serine-rich splicing factor SCL28 transcript II [Sorghum
bicolor]
Length = 190
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 71/97 (73%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ LL+R++ RPED+R PF QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 57 SGLLIRDISLTARPEDIRVPFEQFGPIKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKQ 116
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
M+ ++ GRE+++V+AEENRK P EMR R R S Y
Sbjct: 117 EMNHQVIGGREISIVYAEENRKTPQEMRRRTRTSGRY 153
>gi|448878350|gb|AGE46138.1| arginine/serine-rich splicing factor SCL25B transcript III
[Sorghum bicolor]
Length = 81
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 67/76 (88%)
Query: 4 RSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR 63
R YSYSPSPPR Y RR RSPSPR +YGGRGRDLPTSLLVRNLR DCRPEDLR PFGQFGR
Sbjct: 3 RGYSYSPSPPRGYRRRERSPSPRDYYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGR 62
Query: 64 LKDIYLPRDYYTGEPR 79
LKDIYLPRDYYTG +
Sbjct: 63 LKDIYLPRDYYTGNVK 78
>gi|448878234|gb|AGE46080.1| arginine/serine-rich splicing factor SCL28 transcript III [Zea
mays]
Length = 232
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ LL+RN+ RPED+R F QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 57 SGLLIRNISLTARPEDIRATFEQFGPIKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKR 116
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
M ++ GRE+++V+AEENRK P EMR R R S Y
Sbjct: 117 EMHHQVIGGREISIVYAEENRKTPQEMRMRTRTSGRY 153
>gi|226504024|ref|NP_001140489.1| uncharacterized protein LOC100272550 [Zea mays]
gi|194699696|gb|ACF83932.1| unknown [Zea mays]
gi|448878232|gb|AGE46079.1| arginine/serine-rich splicing factor SCL28 transcript II [Zea mays]
Length = 188
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 73/107 (68%), Gaps = 4/107 (3%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ LL+RN+ RPED+R F QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 57 SGLLIRNISLTARPEDIRATFEQFGPIKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKR 116
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYS 144
M ++ GRE+++V+AEENRK P EMR R R S GR RY+
Sbjct: 117 EMHHQVIGGREISIVYAEENRKTPQEMRMRTRTS----GRYMDERYT 159
>gi|357478561|ref|XP_003609566.1| Splicing factor, arginine/serine-rich 13A [Medicago truncatula]
gi|355510621|gb|AES91763.1| Splicing factor, arginine/serine-rich 13A [Medicago truncatula]
Length = 192
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 68/92 (73%), Gaps = 7/92 (7%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
LP+ LLVRNL D RPEDLRGPF ++G +KD+YLPR+YYTGEPRGFGFV+Y DAA+A
Sbjct: 46 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEA 105
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
K ++ ++ GRE+ +VFAEENRK
Sbjct: 106 KQQLNHTIIGGREIRIVFAEENRKT------- 130
>gi|30687014|ref|NP_197382.3| SC35-like splicing factor 28 [Arabidopsis thaliana]
gi|91806878|gb|ABE66166.1| 28 kDa SC35-like splicing factor [Arabidopsis thaliana]
gi|332005232|gb|AED92615.1| SC35-like splicing factor 28 [Arabidopsis thaliana]
Length = 236
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 96/175 (54%), Gaps = 14/175 (8%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P+ LL+RNL D RP DLR F +FG LKDIYLPR+YYTGEPRGFGFV+Y DAA+A
Sbjct: 46 PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAM 105
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS-RSYDGRRSPPRYSRSPHYA----- 150
M+ ++ GRE+ +VFAEENRK P EMR S R D +R+ R R + +
Sbjct: 106 KRMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSR 165
Query: 151 --------RGYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSPYGSRSYSP 197
R D YSP R SRS PR R + RSP R +P
Sbjct: 166 SPPRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTP 220
>gi|116831499|gb|ABK28702.1| unknown [Arabidopsis thaliana]
Length = 237
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 96/175 (54%), Gaps = 14/175 (8%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P+ LL+RNL D RP DLR F +FG LKDIYLPR+YYTGEPRGFGFV+Y DAA+A
Sbjct: 46 PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAM 105
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS-RSYDGRRSPPRYSRSPHYA----- 150
M+ ++ GRE+ +VFAEENRK P EMR S R D +R+ R R + +
Sbjct: 106 KRMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSR 165
Query: 151 --------RGYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSPYGSRSYSP 197
R D YSP R SRS PR R + RSP R +P
Sbjct: 166 SPPRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTP 220
>gi|302834547|ref|XP_002948836.1| hypothetical protein VOLCADRAFT_120666 [Volvox carteri f.
nagariensis]
gi|300266027|gb|EFJ50216.1| hypothetical protein VOLCADRAFT_120666 [Volvox carteri f.
nagariensis]
Length = 262
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 61/87 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL+VRNL D R EDLR F ++G LKD+Y+PRDYYT PRGFGFV++ D DA DA Y
Sbjct: 17 VSLVVRNLPLDIRAEDLRSKFEKYGELKDVYIPRDYYTQRPRGFGFVEFKDTRDAEDAMY 76
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEM 124
+D + GRE++V F+ E RK P +M
Sbjct: 77 SLDRSTINGREISVTFSREGRKTPRDM 103
>gi|413935498|gb|AFW70049.1| hypothetical protein ZEAMMB73_947633 [Zea mays]
Length = 143
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 85/135 (62%), Gaps = 14/135 (10%)
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS---RS 133
EPRGFGF+QY D DA+DAKYHMDG +LLGRE+ VVFAEEN KKP +MRARE+ S RS
Sbjct: 5 EPRGFGFIQYFDTEDASDAKYHMDGKMLLGREIVVVFAEENWKKPFDMRAREKISGRGRS 64
Query: 134 YDGRRSPPRYSRSPHY----ARGYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSP 189
YDGR +SRSP YSP ++ SRS +P R RERS SRSP
Sbjct: 65 YDGR----LHSRSPGLNDSPRGRSRSQSRSYSPTLKQKHYSRSPAP---RPRERSLSRSP 117
Query: 190 YGSRSYSPSRSRSRS 204
+RS S S SRS
Sbjct: 118 AVNRSRSASPIVSRS 132
>gi|26452521|dbj|BAC43345.1| putative Serine/arginine rich protein [Arabidopsis thaliana]
Length = 236
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 94/181 (51%), Gaps = 26/181 (14%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P+ LL+RNL D RP DLR F +FG LKDIYLPR+YYTGEPRGFGFV+Y DAA+A
Sbjct: 46 PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAM 105
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYA------ 150
M+ ++ GRE+ +VFAEENRK EMR + GRR Y R+ H +
Sbjct: 106 KRMNHKVIGGREIAIVFAEENRKTTQEMRT----TNGTSGRRGD--YKRTSHRSPRRRYR 159
Query: 151 --------------RGYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSPYGSRSYS 196
R D YSP R SRS PR R + RSP R +
Sbjct: 160 SHSRSRSPPRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLT 219
Query: 197 P 197
P
Sbjct: 220 P 220
>gi|301118214|ref|XP_002906835.1| splicing factor, arginine/serine-rich, putative [Phytophthora
infestans T30-4]
gi|262108184|gb|EEY66236.1| splicing factor, arginine/serine-rich, putative [Phytophthora
infestans T30-4]
Length = 233
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 67/95 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRN+ RPED+R F ++G ++D+Y+P+D+YT EP+GF FV++ +A DA+
Sbjct: 7 ISLLVRNISRRLRPEDIRKEFERYGEVRDVYIPKDFYTKEPKGFAFVEFRSEREAEDARR 66
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSR 132
++DG + GR++ VVFA+E RK +MR RER +
Sbjct: 67 NLDGVRIDGRDIRVVFAQERRKSTDQMRERERTEK 101
>gi|159470953|ref|XP_001693621.1| SR protein factor [Chlamydomonas reinhardtii]
gi|158283124|gb|EDP08875.1| SR protein factor [Chlamydomonas reinhardtii]
Length = 286
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL+VRNL D R EDLR F ++G LKD+Y+PRDYYT PRGFGF+++ + DA DA Y
Sbjct: 51 VSLVVRNLPLDIRMEDLRAKFEKYGELKDVYIPRDYYTQRPRGFGFIEFKETRDAEDAMY 110
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEM 124
++D ++ GRE++V F+ E RK P +M
Sbjct: 111 NLDRSVVNGREISVTFSREGRKTPRDM 137
>gi|219888887|gb|ACL54818.1| unknown [Zea mays]
gi|414887750|tpg|DAA63764.1| TPA: splicing factor, arginine/serine-rich 4 [Zea mays]
Length = 138
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 80/129 (62%), Gaps = 22/129 (17%)
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERF------ 130
+PRGFGFVQY DPADAADAKY+MDG ++LGR++TVVFAEENRKKP EMRAR+R
Sbjct: 5 DPRGFGFVQYYDPADAADAKYYMDGQVVLGRQITVVFAEENRKKPQEMRARDRVRGHSYD 64
Query: 131 -SRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSP 189
R R RSP ++ YSRSP +PR+ R RERSYS SP
Sbjct: 65 DRRYSRSRSPRYYRGRSPSRSQSYSRSPPQ--------------NPRH-RLRERSYSGSP 109
Query: 190 YGSRSYSPS 198
SRS S S
Sbjct: 110 VDSRSRSGS 118
>gi|413947426|gb|AFW80075.1| hypothetical protein ZEAMMB73_562035 [Zea mays]
Length = 661
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110
P+DLR PFG+FG +KDIYL DYYT EPRGFGF+Q DP DA+DAKYHMDG +LLGRE+
Sbjct: 589 PDDLRRPFGKFGPVKDIYLSNDYYTREPRGFGFIQNFDPEDASDAKYHMDGKMLLGREIV 648
Query: 111 VVF 113
VV
Sbjct: 649 VVL 651
>gi|58331865|ref|NP_001011096.1| serine/arginine-rich splicing factor 10 [Xenopus (Silurana)
tropicalis]
gi|54038246|gb|AAH84490.1| FUS interacting protein (serine/arginine-rich) 1 [Xenopus
(Silurana) tropicalis]
Length = 258
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P DYYT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDKKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|390337101|ref|XP_800412.2| PREDICTED: serine/arginine-rich splicing factor 12-like
[Strongylocentrotus purpuratus]
Length = 205
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 38 TSLLVRNLRHDC-RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
TSL VRNL D R ED+R FG++G + DIY+P DYYT EPRGF +VQ+ D DA DA
Sbjct: 12 TSLYVRNLPDDVSRAEDMRNLFGKYGPISDIYIPLDYYTREPRGFAYVQFDDIRDAEDAM 71
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
Y +D Y GREL + +AE +RK P++MR +ER
Sbjct: 72 YALDRYRFYGRELEIQYAEGDRKTPTQMRGKER 104
>gi|89272025|emb|CAJ83230.1| FUS interacting protein (serine/arginine-rich) 1 [Xenopus
(Silurana) tropicalis]
Length = 257
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P DYYT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDKKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|209879626|ref|XP_002141253.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556859|gb|EEA06904.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 266
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 98/181 (54%), Gaps = 21/181 (11%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRNLR + P +R F ++G ++D+YLP DYYT PRGFGFV+Y+DP DA DA
Sbjct: 86 CSLLVRNLRFETSPSRVRRHFERYGTVRDVYLPLDYYTRRPRGFGFVEYMDPRDAEDAVN 145
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYSR-- 155
++DG +L G + VV A + RK P MR + + R+SRS Y+ + R
Sbjct: 146 NLDGSVLDGSTIRVVVAHDRRKSPETMRKIQ---------KDAARFSRSSGYSSRFDRPG 196
Query: 156 ----SPDY---YSPPPRRG---RDSRSISPRYRRYRERSYSRSPYGSRSYSPSRSRSRSL 205
+ DY Y P R R+ S RRY +S SRSPY RS S RS S +
Sbjct: 197 GHPPAIDYRNRYRSEPYRHSSYREDDRYSRSKRRYPSKSASRSPYRGRSGSRDRSCSNNR 256
Query: 206 D 206
D
Sbjct: 257 D 257
>gi|413949176|gb|AFW81825.1| hypothetical protein ZEAMMB73_636417 [Zea mays]
Length = 143
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%), Gaps = 6/73 (8%)
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS---RS 133
EPRGFGF+QY DP DA++AKYHMDG +LLGR++ VVF EENRKKPS+MRARE+ S RS
Sbjct: 8 EPRGFGFIQYFDPEDASNAKYHMDGKMLLGRKIAVVFVEENRKKPSDMRAREKISGRGRS 67
Query: 134 YDGR---RSPPRY 143
YDGR RSP Y
Sbjct: 68 YDGRLRSRSPGLY 80
>gi|291399268|ref|XP_002716024.1| PREDICTED: FUS interacting protein (serine-arginine rich) 1
[Oryctolagus cuniculus]
Length = 182
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
R L TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA
Sbjct: 6 RSLNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
DA +++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 66 DALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|9843655|emb|CAC03601.1| SC35-like splicing factor SCL28, 28 kD [Arabidopsis thaliana]
Length = 236
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 95/175 (54%), Gaps = 14/175 (8%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P+ LL+RNL D RP DLR F +FG LKDIYLPR++ +GEPRGFGFV+Y DAA+A
Sbjct: 46 PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNFNSGEPRGFGFVKYRYAEDAAEAM 105
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS-RSYDGRRSPPRYSRSPHYA----- 150
M+ ++ GRE+ +VFAEENRK P EMR S R D +R+ R R + +
Sbjct: 106 KRMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSR 165
Query: 151 --------RGYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSPYGSRSYSP 197
R D YSP R SRS PR R + RSP R +P
Sbjct: 166 SPPRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTP 220
>gi|195648951|gb|ACG43943.1| FUS-interacting serine-arginine-rich protein 1 [Zea mays]
gi|448878230|gb|AGE46078.1| arginine/serine-rich splicing factor SCL28 transcript I [Zea mays]
Length = 240
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 63/86 (73%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ LL+RN+ RPED+R F QFG +KD+YLPR+++T E RGFGFV++ P DAA AK
Sbjct: 57 SGLLIRNISLTARPEDIRATFEQFGPIKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKR 116
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSE 123
M ++ GRE+++V+AEENRK P E
Sbjct: 117 EMHHQVIGGREISIVYAEENRKTPQE 142
>gi|307219223|ref|NP_001182527.1| splicing factor, arginine/serine-rich 13B [Sus scrofa]
Length = 261
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 65/92 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA Y
Sbjct: 10 TSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>gi|302844725|ref|XP_002953902.1| hypothetical protein VOLCADRAFT_121229 [Volvox carteri f.
nagariensis]
gi|300260714|gb|EFJ44931.1| hypothetical protein VOLCADRAFT_121229 [Volvox carteri f.
nagariensis]
Length = 294
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 66/94 (70%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
R RDL TSLL RNL +DLR +FG ++DIYLP+D+YTG+PRG GFV++ DP D
Sbjct: 23 RERDLRTSLLFRNLSKTTTADDLRHTTERFGPIRDIYLPKDFYTGDPRGLGFVEFSDPKD 82
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
A +A++ +DG L GR ++V FA+ RK+P + R
Sbjct: 83 AEEARHSLDGSTLAGRVISVQFAQHGRKRPEDYR 116
>gi|449488891|ref|XP_004174435.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 10 [Taeniopygia guttata]
Length = 262
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|71897267|ref|NP_001026077.1| splicing factor, arginine/serine-rich 13A [Gallus gallus]
gi|53126728|emb|CAG30979.1| hypothetical protein RCJMB04_1g4 [Gallus gallus]
Length = 262
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|355557671|gb|EHH14451.1| hypothetical protein EGK_00378 [Macaca mulatta]
gi|355745027|gb|EHH49652.1| hypothetical protein EGM_00350 [Macaca fascicularis]
Length = 261
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|126328572|ref|XP_001362618.1| PREDICTED: serine/arginine-rich splicing factor 10-like
[Monodelphis domestica]
Length = 262
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|296476640|tpg|DAA18755.1| TPA: FUS interacting protein (serine-arginine rich) 1-like [Bos
taurus]
Length = 262
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKCICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|16905517|ref|NP_473357.1| serine/arginine-rich splicing factor 10 isoform 2 [Homo sapiens]
gi|122937372|ref|NP_001073856.1| serine/arginine-rich splicing factor 10 isoform 2 [Mus musculus]
gi|332807987|ref|XP_003307925.1| PREDICTED: uncharacterized protein LOC456627 [Pan troglodytes]
gi|344287388|ref|XP_003415435.1| PREDICTED: serine/arginine-rich splicing factor 10-like isoform 1
[Loxodonta africana]
gi|397140010|ref|XP_003846472.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|397478979|ref|XP_003810811.1| PREDICTED: serine/arginine-rich splicing factor 10 [Pan paniscus]
gi|403287348|ref|XP_003934911.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
gi|403287350|ref|XP_003934912.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
gi|441676930|ref|XP_004092715.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|47605579|sp|O75494.1|SRS10_HUMAN RecName: Full=Serine/arginine-rich splicing factor 10; AltName:
Full=40 kDa SR-repressor protein; Short=SRrp40; AltName:
Full=FUS-interacting serine-arginine-rich protein 1;
AltName: Full=Splicing factor SRp38; AltName:
Full=Splicing factor, arginine/serine-rich 13A; AltName:
Full=TLS-associated protein with Ser-Arg repeats;
Short=TASR; Short=TLS-associated protein with SR
repeats; AltName: Full=TLS-associated serine-arginine
protein; Short=TLS-associated SR protein
gi|47605750|sp|Q9R0U0.2|SRS10_MOUSE RecName: Full=Serine/arginine-rich splicing factor 10; AltName:
Full=FUS-interacting serine-arginine-rich protein 1;
AltName: Full=Neural-salient serine/arginine-rich
protein; AltName: Full=Neural-specific SR protein;
AltName: Full=Splicing factor, arginine/serine-rich 13A;
AltName: Full=TLS-associated protein with Ser-Arg
repeats; Short=TASR; Short=TLS-associated protein with
SR repeats; AltName: Full=TLS-associated serine-arginine
protein; Short=TLS-associated SR protein
gi|18034489|gb|AAL57514.1|AF449427_1 SRrp40 [Homo sapiens]
gi|3327957|gb|AAC26715.1| TLS-associated protein TASR-2 [Mus musculus]
gi|3327976|gb|AAC26727.1| TLS-associated protein TASR-2 [Homo sapiens]
gi|12852132|dbj|BAB29286.1| unnamed protein product [Mus musculus]
gi|13477159|gb|AAH05039.1| FUS interacting protein (serine/arginine-rich) 1 [Homo sapiens]
gi|15787483|gb|AAL06099.1| TLS-associated SR protein 2 [Homo sapiens]
gi|25006522|gb|AAN65380.1| splicing factor SRp38 [Homo sapiens]
gi|29144881|gb|AAH43060.1| FUS interacting protein (serine-arginine rich) 1 [Mus musculus]
gi|52789308|gb|AAH83082.1| FUS interacting protein (serine-arginine rich) 1 [Mus musculus]
gi|74214326|dbj|BAE40403.1| unnamed protein product [Mus musculus]
gi|74214388|dbj|BAE40431.1| unnamed protein product [Mus musculus]
gi|410223010|gb|JAA08724.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410261892|gb|JAA18912.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410261896|gb|JAA18914.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410261898|gb|JAA18915.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410302464|gb|JAA29832.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410302466|gb|JAA29833.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410302468|gb|JAA29834.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410330569|gb|JAA34231.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410330573|gb|JAA34233.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|417398022|gb|JAA46044.1| Putative serine/arginine-rich splicing factor 10 [Desmodus
rotundus]
Length = 262
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|346986281|ref|NP_001231298.1| serine/arginine-rich splicing factor 10 isoform 1 [Sus scrofa]
gi|338784425|gb|AEI98875.1| serine/arginine-rich splicing factor 10 isoform 2 [Sus scrofa]
Length = 262
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|300360547|ref|NP_001177934.1| serine/arginine-rich splicing factor 10 isoform 3 [Homo sapiens]
gi|307133714|ref|NP_001182513.1| splicing factor, arginine/serine-rich 13A [Macaca mulatta]
gi|16265859|gb|AAL16666.1|AF419332_1 TLS-associated protein TASR-2 [Homo sapiens]
gi|193786066|dbj|BAG50956.1| unnamed protein product [Homo sapiens]
Length = 261
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|359318927|ref|XP_003638945.1| PREDICTED: serine/arginine-rich splicing factor 10 [Canis lupus
familiaris]
Length = 262
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|4001720|dbj|BAA35092.1| neural specific sr protein NSSR 1 [Mus musculus]
Length = 262
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|74141008|dbj|BAE22085.1| unnamed protein product [Mus musculus]
Length = 278
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|148612890|ref|NP_542781.3| serine/arginine-rich splicing factor 12 [Homo sapiens]
gi|47606193|sp|Q8WXF0.1|SRS12_HUMAN RecName: Full=Serine/arginine-rich splicing factor 12; AltName:
Full=35 kDa SR repressor protein; Short=SRrp35; AltName:
Full=Splicing factor, arginine/serine-rich 13B; AltName:
Full=Splicing factor, arginine/serine-rich 19
gi|18034491|gb|AAL57515.1|AF449428_1 SRrp35 [Homo sapiens]
gi|189054199|dbj|BAG36719.1| unnamed protein product [Homo sapiens]
gi|261859278|dbj|BAI46161.1| 35 kDa SR repressor protein [synthetic construct]
gi|380809714|gb|AFE76732.1| serine/arginine-rich splicing factor 12 [Macaca mulatta]
gi|384945376|gb|AFI36293.1| serine/arginine-rich splicing factor 12 [Macaca mulatta]
Length = 261
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 65/92 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA Y
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>gi|348519627|ref|XP_003447331.1| PREDICTED: serine/arginine-rich splicing factor 10-like
[Oreochromis niloticus]
Length = 240
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 74/112 (66%), Gaps = 8/112 (7%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ + RPEDLR FG++G + D+Y+P D+YT +PRGF ++Q+ D DA DA +
Sbjct: 10 TSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYTRQPRGFAYIQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHY 149
+D + GR++ + FA+ +RK P++M+++E RRSP R SR Y
Sbjct: 70 SLDRKWVCGRQIEIQFAQGDRKTPNQMKSKE--------RRSPGRSSRYDDY 113
>gi|296207043|ref|XP_002750472.1| PREDICTED: serine/arginine-rich splicing factor 10 isoform 2
[Callithrix jacchus]
Length = 262
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|410910852|ref|XP_003968904.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Takifugu
rubripes]
Length = 238
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 68/94 (72%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ + RPEDLR FG++G + D+Y+P D+YT +PRGF ++Q+ D DA DA +
Sbjct: 10 TSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYTRQPRGFAYIQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFS 131
+D + GR++ + FA+ +RK P++M+++ER S
Sbjct: 70 SLDRKWVCGRQIEIQFAQGDRKTPNQMKSKERRS 103
>gi|56118384|ref|NP_001007946.1| serine/arginine-rich splicing factor 12 [Xenopus (Silurana)
tropicalis]
gi|51513232|gb|AAH80452.1| serine-arginine repressor protein (35 kDa) [Xenopus (Silurana)
tropicalis]
gi|89272962|emb|CAJ83214.1| serine-arginine repressor protein (35 kDa) [Xenopus (Silurana)
tropicalis]
Length = 253
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 67/96 (69%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ RPEDLR FG++G + D+Y+P D+YT PRGF ++Q+ D DA DA Y
Sbjct: 10 TSLFVRNVADATRPEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYIQFEDVRDAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRS 133
+++ + GR++ + FA+ +RK P +M+++ER + S
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHACS 105
>gi|410170856|ref|XP_003960061.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|426328339|ref|XP_004024960.1| PREDICTED: serine/arginine-rich splicing factor 10 [Gorilla gorilla
gorilla]
Length = 217
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|387018626|gb|AFJ51431.1| Serine/arginine-rich splicing factor 12-like [Crotalus adamanteus]
Length = 234
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 65/92 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ RPEDLR FG++G + D+Y+P D+YT PRGF ++Q+ D DA DA Y
Sbjct: 10 TSLFVRNVADATRPEDLRREFGRYGPVVDVYIPLDFYTRRPRGFAYIQFEDVRDAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>gi|168042923|ref|XP_001773936.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674780|gb|EDQ61284.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 216
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 49/55 (89%)
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS 131
EPRGFGF+QY+DPADAADA+YHMD + GRE+TVVFAEENRKKPSEMR +ER S
Sbjct: 52 EPRGFGFIQYLDPADAADAQYHMDRQFIAGREITVVFAEENRKKPSEMRVKERSS 106
>gi|395854840|ref|XP_003799887.1| PREDICTED: serine/arginine-rich splicing factor 10 [Otolemur
garnettii]
Length = 221
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|327285770|ref|XP_003227605.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 10-like [Anolis carolinensis]
Length = 262
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAFH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|389584299|dbj|GAB67032.1| Ser/Arg-rich splicing factor [Plasmodium cynomolgi strain B]
Length = 352
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
R+ P SLL+R L++D P +R F +FG +KD+YLP DYYT EPRGFGFV++ DP DA
Sbjct: 8 RNQPMSLLIRKLKYDTSPSMVREKFKKFGAIKDVYLPIDYYTKEPRGFGFVEFYDPKDAE 67
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
A M+G + G + V A++ R P MR +E+
Sbjct: 68 QALKEMNGSEIDGNRIEVFVAQKGRSDPRLMRYKEK 103
>gi|22902265|gb|AAH37591.1| FUS interacting protein (serine-arginine rich) 1 [Mus musculus]
Length = 261
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D + EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTQSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|197097312|ref|NP_001125358.1| splicing factor, arginine/serine-rich 13A [Pongo abelii]
gi|55727814|emb|CAH90660.1| hypothetical protein [Pongo abelii]
Length = 262
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 64/91 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+ +E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKVKE 100
>gi|62897549|dbj|BAD96714.1| FUS interacting protein (serine-arginine rich) 1 isoform 2 variant
[Homo sapiens]
Length = 262
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++++A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQIKAKE 100
>gi|74204113|dbj|BAE29044.1| unnamed protein product [Mus musculus]
gi|74211878|dbj|BAE29284.1| unnamed protein product [Mus musculus]
Length = 183
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|5730079|ref|NP_006616.1| serine/arginine-rich splicing factor 10 isoform 1 [Homo sapiens]
gi|6753820|ref|NP_034308.1| serine/arginine-rich splicing factor 10 isoform 1 [Mus musculus]
gi|346986279|ref|NP_001231297.1| serine/arginine-rich splicing factor 10 isoform 2 [Sus scrofa]
gi|114554649|ref|XP_001166460.1| PREDICTED: uncharacterized protein LOC456627 isoform 3 [Pan
troglodytes]
gi|332266729|ref|XP_003282350.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|344287394|ref|XP_003415438.1| PREDICTED: serine/arginine-rich splicing factor 10-like isoform 4
[Loxodonta africana]
gi|403287342|ref|XP_003934908.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
gi|410032453|ref|XP_003949372.1| PREDICTED: uncharacterized protein LOC456627 [Pan troglodytes]
gi|426328337|ref|XP_004024959.1| PREDICTED: serine/arginine-rich splicing factor 10 [Gorilla gorilla
gorilla]
gi|441676940|ref|XP_004092716.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|16265857|gb|AAL16665.1|AF419331_1 TLS-associated protein TASR-1 [Homo sapiens]
gi|2961107|gb|AAC70916.1| TLS-associated protein with SR repeats [Mus musculus]
gi|2961149|gb|AAC70918.1| TLS-associated protein TASR [Homo sapiens]
gi|7022446|dbj|BAA91601.1| unnamed protein product [Homo sapiens]
gi|12654547|gb|AAH01107.1| FUS interacting protein (serine/arginine-rich) 1 [Homo sapiens]
gi|15787482|gb|AAL06098.1| TLS-associated SR protein 1 [Homo sapiens]
gi|25006524|gb|AAN65381.1| splicing factor SRp38-2 [Homo sapiens]
gi|74178032|dbj|BAE29809.1| unnamed protein product [Mus musculus]
gi|74195900|dbj|BAE30509.1| unnamed protein product [Mus musculus]
gi|74214411|dbj|BAE40441.1| unnamed protein product [Mus musculus]
gi|261861046|dbj|BAI47045.1| splicing factor, arginine/serine-rich 13A [synthetic construct]
gi|312153330|gb|ADQ33177.1| FUS interacting protein (serine/arginine-rich) 1 [synthetic
construct]
gi|410223008|gb|JAA08723.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410261894|gb|JAA18913.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410302462|gb|JAA29831.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410330571|gb|JAA34232.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|417396659|gb|JAA45363.1| Putative serine/arginine-rich splicing factor [Desmodus rotundus]
Length = 183
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|208973274|ref|NP_001129183.1| 35 kDa SR repressor protein [Rattus norvegicus]
Length = 261
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 65/92 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ RPEDLR FG++G + D+Y+P D+Y+ PRGF +VQ+ D DA DA Y
Sbjct: 10 TSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYVQFEDVRDAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>gi|301754964|ref|XP_002913325.1| PREDICTED: splicing factor, arginine/serine-rich 13A-like
[Ailuropoda melanoleuca]
gi|359318923|ref|XP_003638943.1| PREDICTED: serine/arginine-rich splicing factor 10 [Canis lupus
familiaris]
Length = 183
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|118151320|ref|NP_001071594.1| splicing factor, arginine/serine-rich 13A [Bos taurus]
gi|73586753|gb|AAI03101.1| FUS interacting protein (serine/arginine-rich) 1 [Bos taurus]
gi|296490040|tpg|DAA32153.1| TPA: FUS interacting protein (serine/arginine-rich) 1 [Bos taurus]
Length = 182
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|300360549|ref|NP_001177936.1| serine/arginine-rich splicing factor 10 isoform 5 [Homo sapiens]
gi|291393216|ref|XP_002713069.1| PREDICTED: FUS interacting protein (serine-arginine rich) 1
[Oryctolagus cuniculus]
gi|410170859|ref|XP_003960062.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|74139434|dbj|BAE40858.1| unnamed protein product [Mus musculus]
Length = 182
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|4001722|dbj|BAA35093.1| neural specific sr protein NSSR 2 [Mus musculus]
Length = 183
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|383415877|gb|AFH31152.1| serine/arginine-rich splicing factor 12 [Macaca mulatta]
Length = 261
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 65/92 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D +A DA Y
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVREAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>gi|300360545|ref|NP_001177935.1| serine/arginine-rich splicing factor 10 isoform 4 [Homo sapiens]
gi|332266731|ref|XP_003282351.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|397140012|ref|XP_003846473.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|426328341|ref|XP_004024961.1| PREDICTED: serine/arginine-rich splicing factor 10 [Gorilla gorilla
gorilla]
gi|14603220|gb|AAH10074.1| FUSIP1 protein [Homo sapiens]
Length = 173
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|344287390|ref|XP_003415436.1| PREDICTED: serine/arginine-rich splicing factor 10-like isoform 2
[Loxodonta africana]
Length = 173
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|348570784|ref|XP_003471177.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Cavia
porcellus]
Length = 173
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|359318925|ref|XP_003638944.1| PREDICTED: serine/arginine-rich splicing factor 10 [Canis lupus
familiaris]
Length = 173
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|403287344|ref|XP_003934909.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
Length = 173
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|390473557|ref|XP_003734621.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Callithrix
jacchus]
Length = 262
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ +D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA
Sbjct: 10 TSLFVRNVANDTRSEDLRREFGRYGPIVDVYVPPDFYTRRPRGFAYVQFEDVRDAEDALR 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQMEIQFAQGDRKTPNQMKAKE 100
>gi|68063653|ref|XP_673822.1| Ser/Arg-rich splicing factor [Plasmodium berghei strain ANKA]
gi|56491949|emb|CAH95915.1| Ser/Arg-rich splicing factor, putative [Plasmodium berghei]
Length = 297
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 59/93 (63%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P SLL+R L+ + P +R F +FG +KD+YLP DYYT EPRGFGFV++ DP DA A
Sbjct: 11 PMSLLIRKLKFNTSPSMVRDKFKKFGAIKDVYLPIDYYTKEPRGFGFVEFYDPKDAEQAL 70
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
M+G L G + V A++ R P MR +ER
Sbjct: 71 KEMNGSELDGNRIEVFVAQKGRSDPRIMRYKER 103
>gi|298708752|emb|CBJ30714.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 270
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 65/94 (69%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRNL R +D++ F FG ++D+YLP D+ T +PRGF FV++ DP DAA A+
Sbjct: 33 VSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHARD 92
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFS 131
+DGY L GR ++V++A+E RK+P EM +ER
Sbjct: 93 RLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVE 126
>gi|332807982|ref|XP_513202.3| PREDICTED: uncharacterized protein LOC456627 isoform 5 [Pan
troglodytes]
Length = 176
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|221057297|ref|XP_002259786.1| Arg-rich splicing factor [Plasmodium knowlesi strain H]
gi|193809858|emb|CAQ40562.1| Arg-rich splicing factor, putative [Plasmodium knowlesi strain H]
Length = 327
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
R+ P SLL+R L++D P +R F +FG +KD+YLP DYYT EPRGFGFV++ DP DA
Sbjct: 8 RNQPMSLLIRKLKYDTSPSMVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDPKDAE 67
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
A M+G + G + V A++ R P MR +E+
Sbjct: 68 VALKEMNGAEIDGNRVEVFVAQKGRSDPRVMRYKEK 103
>gi|156094342|ref|XP_001613208.1| Ser/Arg-rich splicing factor [Plasmodium vivax Sal-1]
gi|148802082|gb|EDL43481.1| Ser/Arg-rich splicing factor, putative [Plasmodium vivax]
Length = 328
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
R+ P SLL+R L++D P +R F ++G +KD+YLP DYYT EPRGFGFV++ DP DA
Sbjct: 8 RNQPMSLLIRKLKYDTSPSMVREKFKKYGAIKDVYLPIDYYTKEPRGFGFVEFYDPKDAE 67
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
A M+G + G + V A++ R P MR +E+
Sbjct: 68 QALKEMNGSEIDGNRIEVFVAQKGRSDPRLMRYKEK 103
>gi|71043780|ref|NP_001020909.1| serine/arginine-rich splicing factor 10 [Rattus norvegicus]
gi|68533686|gb|AAH98831.1| FUS interacting protein (serine-arginine rich) 1 [Rattus
norvegicus]
Length = 164
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|74179690|dbj|BAE22485.1| unnamed protein product [Mus musculus]
Length = 262
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 64/91 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ + K P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDLKTPNQMKAKE 100
>gi|90079587|dbj|BAE89473.1| unnamed protein product [Macaca fascicularis]
Length = 219
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|300360554|ref|NP_001177938.1| serine/arginine-rich splicing factor 10 isoform 6 [Homo sapiens]
gi|332266733|ref|XP_003282352.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|332807985|ref|XP_001166490.2| PREDICTED: uncharacterized protein LOC456627 isoform 4 [Pan
troglodytes]
gi|344287392|ref|XP_003415437.1| PREDICTED: serine/arginine-rich splicing factor 10-like isoform 3
[Loxodonta africana]
gi|345793665|ref|XP_866416.2| PREDICTED: serine/arginine-rich splicing factor 10 isoform 5 [Canis
lupus familiaris]
gi|403287346|ref|XP_003934910.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
gi|410170861|ref|XP_003960063.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|426328343|ref|XP_004024962.1| PREDICTED: serine/arginine-rich splicing factor 10 [Gorilla gorilla
gorilla]
gi|194382312|dbj|BAG58911.1| unnamed protein product [Homo sapiens]
gi|410223012|gb|JAA08725.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
Length = 165
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|147903707|ref|NP_001088237.1| serine/arginine-rich splicing factor 12 [Xenopus laevis]
gi|54038377|gb|AAH84231.1| LOC495068 protein [Xenopus laevis]
Length = 251
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 67/98 (68%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ RPEDLR FG++G + D+Y+P D+Y PRGF ++Q+ D DA DA Y
Sbjct: 10 TSLFVRNVGDATRPEDLRREFGRYGPIVDVYVPLDFYNRRPRGFAYIQFEDVRDAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYD 135
+++ + GR++ + FA+ +RK P +M+++ER + S D
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHASSPD 107
>gi|147899629|ref|NP_001079656.1| serine/arginine-rich splicing factor 10 [Xenopus laevis]
gi|28302303|gb|AAH46695.1| MGC53149 protein [Xenopus laevis]
Length = 258
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 63/91 (69%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL VRN+ D R EDLR FG++G + D+Y+P DYY PRGF +VQ+ D DA DA +
Sbjct: 10 SSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P +M+A+E
Sbjct: 70 NLDKKWICGRQIEIQFAQGDRKTPHQMKAKE 100
>gi|224073164|ref|XP_002304003.1| predicted protein [Populus trichocarpa]
gi|222841435|gb|EEE78982.1| predicted protein [Populus trichocarpa]
Length = 188
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 49/57 (85%)
Query: 73 YYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+ EPRGFGFVQY DP DAA+AK+HMDG + LGRELTVVFAEENRKKP +MRARER
Sbjct: 20 FLLLEPRGFGFVQYADPHDAAEAKHHMDGRVFLGRELTVVFAEENRKKPVDMRARER 76
>gi|291404036|ref|XP_002718366.1| PREDICTED: FUS interacting protein (serine-arginine rich) 1
[Oryctolagus cuniculus]
Length = 182
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 64/91 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPIDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + G ++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGHQIEIQFAQGDRKTPNQMKAKE 100
>gi|18203864|gb|AAH21715.1| Serine-arginine repressor protein (35 kDa) [Homo sapiens]
gi|123982510|gb|ABM82996.1| serine-arginine repressor protein (35 kDa) [synthetic construct]
gi|123997175|gb|ABM86189.1| serine-arginine repressor protein (35 kDa) [synthetic construct]
Length = 261
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 64/92 (69%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D A DA Y
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRGAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>gi|41055271|ref|NP_956827.1| splicing factor, arginine/serine-rich 13A [Danio rerio]
gi|33604116|gb|AAH56275.1| Zgc:65772 protein [Danio rerio]
gi|42542503|gb|AAH66442.1| Zgc:65772 [Danio rerio]
Length = 248
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 66/94 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL VRN+ + RPEDLR FG++G + D+Y+P D+Y+ PRGF ++Q+ D DA DA +
Sbjct: 10 SSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFS 131
++D + GR++ + FA+ +RK P +M+ +ER S
Sbjct: 70 NLDRKWVCGRQIEIQFAQGDRKTPGQMKNKERSS 103
>gi|384247695|gb|EIE21181.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 184
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 65/93 (69%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
GR R SLLVRNL +DLR ++GRL+D+Y+P+DYY+GEPRG GF+++ DP
Sbjct: 7 GRERADGCSLLVRNLSRSVTLDDLRYVAEKYGRLRDVYIPKDYYSGEPRGIGFLEFTDPR 66
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
DA DA Y +D ++ G+E++VV A + RK+P +
Sbjct: 67 DAEDAIYGLDRKVIQGKEVSVVLALQGRKRPDD 99
>gi|224002947|ref|XP_002291145.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972921|gb|EED91252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 324
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 5/104 (4%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRN+ + +DL+ FG+ G ++D+Y+PRD+++ +P+GF F++Y P A +A+
Sbjct: 189 VSLLVRNVNGEISTQDLQMAFGRIGEVRDVYIPRDFHSQQPKGFAFIEYATPEQAREARD 248
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPP 141
M+ +++ GRE+ VV+A+E RK P+EMR R DGR P
Sbjct: 249 EMNHFMMKGREIEVVYAQEKRKTPNEMRG-----RVVDGREVRP 287
>gi|413955615|gb|AFW88264.1| hypothetical protein ZEAMMB73_484317, partial [Zea mays]
Length = 148
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 65/75 (86%), Gaps = 2/75 (2%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRG--RDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
GRSY++SPSPPR Y RR RSPSPRG YGGR RDLPTSLLVRNLR DCRP+DLR PFG+
Sbjct: 73 GRSYNHSPSPPRGYRRRTRSPSPRGRYGGRDTDRDLPTSLLVRNLRRDCRPDDLRRPFGK 132
Query: 61 FGRLKDIYLPRDYYT 75
FG +KDIYLP+DYYT
Sbjct: 133 FGPVKDIYLPKDYYT 147
>gi|410170863|ref|XP_003960064.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
Length = 146
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>gi|124505987|ref|XP_001351591.1| Ser/Arg-rich splicing factor, putative [Plasmodium falciparum 3D7]
gi|23504518|emb|CAD51398.1| Ser/Arg-rich splicing factor, putative [Plasmodium falciparum 3D7]
Length = 308
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
++ P SLL+R L+ D P +R F +FG +KD+YLP DYYT EPRGFGFV++ D DA
Sbjct: 8 KNQPMSLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAE 67
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
A M+G + G + V A++ R P MR +E+
Sbjct: 68 QALKEMNGSEIDGSRIEVFVAQKGRSDPRHMRYKEK 103
>gi|66362632|ref|XP_628282.1| splicing factor RRM domain containing protein; T22E16.120 SC35-like
splicing factor [Cryptosporidium parvum Iowa II]
gi|67590297|ref|XP_665474.1| dentin phosphoryn [Cryptosporidium hominis TU502]
gi|46229752|gb|EAK90570.1| splicing factor RRM domain containing protein; T22E16.120 SC35-like
splicing factor [Cryptosporidium parvum Iowa II]
gi|54656181|gb|EAL35244.1| dentin phosphoryn [Cryptosporidium hominis]
gi|323508677|dbj|BAJ77232.1| cgd7_940 [Cryptosporidium parvum]
gi|323510599|dbj|BAJ78193.1| cgd7_940 [Cryptosporidium parvum]
Length = 286
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 96/187 (51%), Gaps = 21/187 (11%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRNLR + P +R F ++G ++D+YLP DYYT PRGFGFV+Y+DP DA DA
Sbjct: 90 CSLLVRNLRFETSPGRVRHHFERYGPVRDVYLPLDYYTRRPRGFGFVEYMDPRDAQDAVN 149
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPP-RYSRSP-------HY 149
+DG LL G + VV A + RK P MR +R S PP RY P H
Sbjct: 150 RLDGSLLDGSTIRVVVAHDRRKSPETMRRIQRDSGRGPRMGGPPSRYDHRPSGGYPPEHG 209
Query: 150 ARGYSRSPDYYSPPPRRG-RDS----------RSISPRYRRYRERSYSRSPYGSRSYSPS 198
RG DYY + G RD S SP Y R RS SRSPY R S S
Sbjct: 210 YRGGRYRDDYYGGRRQGGYRDDDRNYRPKRRYSSRSPSYHSPRGRSVSRSPY--RGGSIS 267
Query: 199 RSRSRSL 205
R S S+
Sbjct: 268 REHSHSI 274
>gi|354466061|ref|XP_003495494.1| PREDICTED: serine/arginine-rich splicing factor 12-like, partial
[Cricetulus griseus]
Length = 249
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 62/88 (70%)
Query: 42 VRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101
VRN D RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA Y+++
Sbjct: 2 VRNCAGDSRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNR 61
Query: 102 YLLLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 62 KWVCGRQIEIQFAQGDRKTPGQMKSKER 89
>gi|414589482|tpg|DAA40053.1| TPA: hypothetical protein ZEAMMB73_656721 [Zea mays]
Length = 110
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 49/53 (92%)
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
EPRGFGF+QY DP DA+DAKYHMDG +LLGRE+ VVFAEENRKKP+++RARE+
Sbjct: 5 EPRGFGFIQYFDPEDASDAKYHMDGKMLLGREIAVVFAEENRKKPADIRAREK 57
>gi|449684562|ref|XP_002161704.2| PREDICTED: serine/arginine-rich splicing factor 12-like, partial
[Hydra magnipapillata]
Length = 131
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL +RNL R +DLR F ++G ++DIY+P DYYT EPRGF +VQ+ D DA DA Y
Sbjct: 12 TSLYIRNLSSSTRSDDLRRMFAKYGPIRDIYIPLDYYTREPRGFCYVQFEDIRDAEDALY 71
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
H L GREL + +AE +RK P +MR RE
Sbjct: 72 HESHARLHGRELDIQYAEGDRKTPGQMRTRE 102
>gi|388521979|gb|AFK49051.1| unknown [Lotus japonicus]
Length = 122
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/96 (78%), Positives = 78/96 (81%), Gaps = 4/96 (4%)
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFS---RSYDGRRSPPRYSRSPHYARGYSR 155
MDG +LLGRELTVVFAEENRKKP+EMRARER S RSYD RRSP YSRSP YAR YSR
Sbjct: 1 MDGQILLGRELTVVFAEENRKKPAEMRARERHSARERSYDYRRSPRGYSRSPRYARTYSR 60
Query: 156 SPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSPYG 191
SPDY +P PRR R SRSISPR RRY RSYS SPYG
Sbjct: 61 SPDY-TPSPRRRRYSRSISPRDRRYGRRSYSGSPYG 95
>gi|348526131|ref|XP_003450574.1| PREDICTED: serine/arginine-rich splicing factor 10-like
[Oreochromis niloticus]
Length = 257
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 7/101 (6%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDPA 90
TSL VRN+ + RPEDLR FG++G + D+Y+P D+YT PRGF ++QY D
Sbjct: 10 TSLFVRNIADESRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYIQYPLFFHMFEDVR 69
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS 131
DA DA +++D + GR++ + FA+ +RK P++M+A+ER S
Sbjct: 70 DAEDALHNLDRKWVCGRQIEIQFAQGDRKTPNQMKAKERHS 110
>gi|159463786|ref|XP_001690123.1| predicted protein [Chlamydomonas reinhardtii]
gi|158284111|gb|EDP09861.1| predicted protein [Chlamydomonas reinhardtii]
Length = 118
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 64/94 (68%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
R RD TSLL RNL EDLR ++G ++DIYLP+D+ TGEPRG GFV++ DP D
Sbjct: 24 RERDPSTSLLFRNLSKTTTTEDLRHYAERYGPIRDIYLPKDFQTGEPRGLGFVEFSDPKD 83
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
A +A++ MDG + GR ++V FA+ RK+P + R
Sbjct: 84 AEEARHCMDGSTVAGRVISVTFAQHGRKRPEDYR 117
>gi|227204479|dbj|BAH57091.1| AT1G55310 [Arabidopsis thaliana]
Length = 203
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 86/130 (66%), Gaps = 12/130 (9%)
Query: 87 IDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSP------ 140
+DPADAADAK+HMDGYLLLGRELTVVFAEENRKKP+EMRARER + RR
Sbjct: 1 MDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYS 60
Query: 141 PRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRYR-ERSYSRSPYGS----RSY 195
S P R SRS DYYSPPPRR RSISPR RY RSYSRSP RS
Sbjct: 61 RSRSPPPRRGRSRSRSGDYYSPPPRR-HHPRSISPREERYDGRRSYSRSPASDGSRGRSL 119
Query: 196 SPSRSRSRSL 205
+P R +SRSL
Sbjct: 120 TPVRGKSRSL 129
>gi|327261517|ref|XP_003215576.1| PREDICTED: serine/arginine-rich splicing factor 12-like [Anolis
carolinensis]
Length = 261
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 66/97 (68%), Gaps = 5/97 (5%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-----IDPADA 92
TSL VRN+ RPEDLR FG++G + D+Y+P D+YT PRGF ++QY D DA
Sbjct: 10 TSLFVRNVADATRPEDLRHEFGRYGPVVDVYVPLDFYTRRPRGFAYIQYPLFMFEDVRDA 69
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA Y+++ + GR++ + FA+ +RK P++M+++ER
Sbjct: 70 EDALYNLNRKWVCGRQIEIQFAQGDRKTPNQMKSKER 106
>gi|219118652|ref|XP_002180094.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408351|gb|EEC48285.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 106
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 63/88 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL+RN+ D + +DL FG+ G ++D+Y+PRD+++ +P+GF F++Y A +A+
Sbjct: 18 VSLLIRNVAPDIQSQDLLTAFGRIGEVRDVYIPRDFHSQQPKGFAFIEYATAEQAREARD 77
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
MD +++ GREL VVFA+E RK P+EMR
Sbjct: 78 EMDRFVVRGRELEVVFAQERRKTPTEMR 105
>gi|297478612|ref|XP_002690241.1| PREDICTED: uncharacterized protein LOC787762 [Bos taurus]
gi|296484064|tpg|DAA26179.1| TPA: serine-arginine repressor protein (35kDa) (SRrp35)-like [Bos
taurus]
Length = 268
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 7/99 (7%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDPA 90
TSL VRN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D
Sbjct: 10 TSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFYFIFEDVR 69
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 DAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 108
>gi|443711870|gb|ELU05439.1| hypothetical protein CAPTEDRAFT_124300 [Capitella teleta]
Length = 135
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 63/96 (65%), Gaps = 4/96 (4%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY----IDPADAA 93
TSL VRN+ R E+LR FG++G + D+YLP D+YT PRGF ++QY IDP DA
Sbjct: 10 TSLYVRNVPDTTRSEELRSLFGKYGPISDVYLPLDFYTRRPRGFSYIQYPSFSIDPRDAE 69
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA YH+D G +L + FA +RK PS+MR +ER
Sbjct: 70 DALYHLDRTRFFGCDLEIEFARGDRKTPSQMRTKER 105
>gi|448878238|gb|AGE46082.1| arginine/serine-rich splicing factor SCL25A transcript II [Zea
mays]
Length = 80
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 65/75 (86%), Gaps = 2/75 (2%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRG--RDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
GRSY++SPSPPR Y RR RSPSPRG YGGR RDLPTSLLVRNLR DCRP+DLR PFG+
Sbjct: 2 GRSYNHSPSPPRGYRRRTRSPSPRGRYGGRDTDRDLPTSLLVRNLRRDCRPDDLRRPFGK 61
Query: 61 FGRLKDIYLPRDYYT 75
FG +KDIYLP+DYYT
Sbjct: 62 FGPVKDIYLPKDYYT 76
>gi|209878256|ref|XP_002140569.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556175|gb|EEA06220.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 244
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLL+R+LR + P +R F +FG+++D+YLP D++T PRGFGFV+Y++ +DA A
Sbjct: 14 SLLIRSLRFETPPSLVRRVFERFGQIRDVYLPVDFHTKRPRGFGFVEYVEESDALAAIQR 73
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHY 149
M+G L G ++ V FA+E RK P MR R+ + +Y RRS S HY
Sbjct: 74 MNGANLDGSQIHVTFAQEGRKSPESMRHRD--NENYYTRRSIDSRYNSSHY 122
>gi|307133716|ref|NP_001182514.1| splicing factor, arginine/serine-rich 13B [Macaca mulatta]
gi|402867628|ref|XP_003897943.1| PREDICTED: serine/arginine-rich splicing factor 12 [Papio anubis]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 6/98 (6%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY------IDPAD 91
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D D
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLLFIFEDVRD 69
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
A DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 AEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 107
>gi|448878240|gb|AGE46083.1| arginine/serine-rich splicing factor SCL25A transcript III [Zea
mays]
Length = 77
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 65/75 (86%), Gaps = 2/75 (2%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRG--RDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
GRSY++SPSPPR Y RR RSPSPRG YGGR RDLPTSLLVRNLR DCRP+DLR PFG+
Sbjct: 2 GRSYNHSPSPPRGYRRRTRSPSPRGRYGGRDTDRDLPTSLLVRNLRRDCRPDDLRRPFGK 61
Query: 61 FGRLKDIYLPRDYYT 75
FG +KDIYLP+DYYT
Sbjct: 62 FGPVKDIYLPKDYYT 76
>gi|302834399|ref|XP_002948762.1| hypothetical protein VOLCADRAFT_73973 [Volvox carteri f.
nagariensis]
gi|300265953|gb|EFJ50142.1| hypothetical protein VOLCADRAFT_73973 [Volvox carteri f.
nagariensis]
Length = 274
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
S+LVRN+ + EDLR F +FG L+D+Y+PRDYYT RGFGF+++ D DA +A Y
Sbjct: 21 VSVLVRNIPLNYTAEDLRAKFEKFGELRDVYIPRDYYTQRSRGFGFIEFRDARDADEAIY 80
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
D +L GRE+ V ++E RK P EM E
Sbjct: 81 QTDRTMLDGREINVCLSKEGRKTPREMMILE 111
>gi|296198765|ref|XP_002746858.1| PREDICTED: serine/arginine-rich splicing factor 12 [Callithrix
jacchus]
Length = 268
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 7/99 (7%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDPA 90
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFYFIFEDVR 69
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 DAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 108
>gi|114608450|ref|XP_518634.2| PREDICTED: serine/arginine-rich splicing factor 12 [Pan
troglodytes]
Length = 268
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 7/99 (7%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDPA 90
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFYFIFEDVR 69
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 DAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 108
>gi|348688880|gb|EGZ28694.1| hypothetical protein PHYSODRAFT_537360 [Phytophthora sojae]
Length = 460
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
Query: 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
G RG SLLVRN+ RPED+R F ++G ++D+Y+P+DYYT EP+GF FV++
Sbjct: 226 MGDRG---GISLLVRNISRRLRPEDIRKEFERYGEVRDVYIPKDYYTKEPKGFAFVEFRS 282
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
+A DA+ ++DG + GR++ VVFA+E RK +M
Sbjct: 283 EREADDARRNLDGVRIDGRDIRVVFAQERRKSTDQM 318
>gi|325179763|emb|CCA14166.1| splicing factor putative [Albugo laibachii Nc14]
Length = 207
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 61/87 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL+RN+ R ++LR F +FG ++D+Y+PRD++T E +GF FV++ + DA +A
Sbjct: 7 ISLLIRNISRRMRSDELRKTFEEFGDVRDVYIPRDFHTREVKGFAFVEFKNERDAEEALR 66
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEM 124
++DG L GRE+TVVFA+E RK EM
Sbjct: 67 NLDGSRLDGREITVVFAQEKRKSTDEM 93
>gi|294933970|ref|XP_002780926.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
gi|239891073|gb|EER12721.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
Length = 235
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL+VRNL +D P+ +R F ++G ++D+YLP DY +G PRGFGFV++ DP D +AK
Sbjct: 68 CSLIVRNLNYDTSPQHVRSLFSRYGEIRDVYLPLDYNSGRPRGFGFVEFCDPRDVVEAKN 127
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
MDG ++ G + V A+ RK P MR
Sbjct: 128 AMDGKVVDGNAIQVDIAQRGRKSPRTMR 155
>gi|426224259|ref|XP_004006291.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Ovis
aries]
Length = 262
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 63/91 (69%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R DLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRYGDLRREFGRYGPVVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+ +E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKGKE 100
>gi|297678669|ref|XP_002817185.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 12 [Pongo abelii]
Length = 261
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 61/92 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA D +
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDXLF 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 70 ITHRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>gi|198438407|ref|XP_002126373.1| PREDICTED: similar to FUS interacting protein (serine-arginine
rich) 1 [Ciona intestinalis]
Length = 221
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 59/91 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL VRN+ + RP+DLR F +FG + D+Y+P DYY PRGF ++Q+ D DA DA Y
Sbjct: 8 ASLFVRNIADNIRPDDLRREFVRFGPVSDVYIPLDYYNRRPRGFAYIQFEDTRDAEDALY 67
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
MD + GR + V FA +RK P++MR +E
Sbjct: 68 AMDRKWICGRYIEVQFAAGDRKTPNQMRTKE 98
>gi|126310597|ref|XP_001376489.1| PREDICTED: serine/arginine-rich splicing factor 12-like
[Monodelphis domestica]
Length = 257
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 9/101 (8%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY---------ID 88
TSL VRN+ RPEDLR FG++G + D+Y+P D+YT PRGF ++QY D
Sbjct: 10 TSLFVRNVTDATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYIQYPLFHSLVIFED 69
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 VRDAEDALYNLNKKWVCGRQIEIQFAQGDRKTPGQMKSKER 110
>gi|213513443|ref|NP_001133450.1| FUS-interacting serine-arginine-rich protein 1 [Salmo salar]
gi|209154048|gb|ACI33256.1| FUS-interacting serine-arginine-rich protein 1 [Salmo salar]
Length = 271
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL +RN+ + RPEDLR FG++G + D+Y+P D+Y+ PRGF ++Q+ D DA DA +
Sbjct: 10 TSLFIRNISDESRPEDLRREFGRYGPVVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+ +E
Sbjct: 70 NLDRKWVCGRQIEIQFAQGDRKTPNQMQGKE 100
>gi|390480607|ref|XP_003735962.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Callithrix
jacchus]
Length = 123
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 64/91 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+ +E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKDKE 100
>gi|119568946|gb|EAW48561.1| serine-arginine repressor protein (35 kDa), isoform CRA_a [Homo
sapiens]
Length = 262
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGF-VQYIDPADAADAK 96
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF + V + D DA DA
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYLVIFEDVRDAEDAL 69
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 YNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 102
>gi|70928216|ref|XP_736352.1| Ser/Arg-rich splicing factor [Plasmodium chabaudi chabaudi]
gi|56510813|emb|CAH84192.1| Ser/Arg-rich splicing factor, putative [Plasmodium chabaudi
chabaudi]
Length = 129
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 59/92 (64%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P SLL+R L+ + P +R F +FG +KD+YLP DYYT EPRGFGFV++ DP DA +A
Sbjct: 11 PMSLLIRKLKFNTSPSMVREKFKKFGAIKDVYLPIDYYTKEPRGFGFVEFYDPKDAEEAL 70
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
M+G + G + V A++ R P MR +E
Sbjct: 71 KEMNGSEIDGNRIEVFVAQKGRSDPRVMRYKE 102
>gi|82541600|ref|XP_725030.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479883|gb|EAA16595.1| PR264 [Plasmodium yoelii yoelii]
Length = 121
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 59/93 (63%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P SLL+R L+ + P +R F +FG +KD+YLP DYYT EPRGFGFV++ DP DA +A
Sbjct: 11 PMSLLIRKLKFNTSPSMVRDKFKKFGAIKDVYLPIDYYTKEPRGFGFVEFYDPKDAXEAL 70
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
M+G L + V A++ R P MR +ER
Sbjct: 71 KEMNGXELXXNRIEVFVAQKGRSDPRIMRYKER 103
>gi|442761097|gb|JAA72707.1| Putative splicing factor sc35, partial [Ixodes ricinus]
Length = 226
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL +RN+ RPEDLR FG++G + D+Y+P DYY PRGF +VQ+ D DA DA Y
Sbjct: 32 SSLFIRNVPDGTRPEDLRSLFGKYGPITDVYIPVDYYARRPRGFAYVQFEDLRDAEDAMY 91
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEM 124
+D GREL + FA+ +RK PSEM
Sbjct: 92 SLDRTRFYGRELEIEFAQGDRKTPSEM 118
>gi|313231155|emb|CBY19153.1| unnamed protein product [Oikopleura dioica]
gi|313242052|emb|CBY34232.1| unnamed protein product [Oikopleura dioica]
Length = 266
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 58/90 (64%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL VRN+ D ++L F ++G +KD+Y+PRDYY PRGF +VQ+ D DA DA+
Sbjct: 12 SLFVRNIADDIDQDELTREFSRYGSIKDVYIPRDYYNKRPRGFAYVQFADIHDAEDAQEG 71
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARE 128
MDG + GR + V FA+ +RK P MR R+
Sbjct: 72 MDGRKVCGRFIDVQFAKGDRKSPGSMRTRD 101
>gi|449685942|ref|XP_002169071.2| PREDICTED: serine/arginine-rich splicing factor 10-like [Hydra
magnipapillata]
Length = 171
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 61/97 (62%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
RG PTS+ VRN+ HD R EDLR F ++G + D+Y+P DYYT EPRGF +VQ+ D
Sbjct: 4 RGGRTPTSVFVRNVHHDVRSEDLRRIFEKYGDISDVYIPLDYYTREPRGFAYVQFDYEDD 63
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A DA +DG L GR++ A RK P +MR ++
Sbjct: 64 AEDAVDGLDGTTLFGRQIFCKNARGGRKTPHQMRYKD 100
>gi|156084456|ref|XP_001609711.1| RNA recognition motif containing protein [Babesia bovis]
gi|154796963|gb|EDO06143.1| RNA recognition motif containing protein [Babesia bovis]
Length = 253
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 59/87 (67%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+L+RNL++ R ++R F FG+++D+YLP+DY +G PRGFGFV++++ A A DA
Sbjct: 10 SVLIRNLKYSTRASEVREAFECFGKIRDVYLPQDYSSGMPRGFGFVEFVEEAAALDAIRK 69
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
MD G+ +T A++ RK P+ MR
Sbjct: 70 MDNTTFNGKVITCCEAQDRRKSPNSMR 96
>gi|156407025|ref|XP_001641345.1| predicted protein [Nematostella vectensis]
gi|156228483|gb|EDO49282.1| predicted protein [Nematostella vectensis]
Length = 95
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG--FVQYIDPADAADA 95
+S+ VRNL D RP+DLR FG++GR+ D+Y+P DYYT EPRGF ++ + D DA DA
Sbjct: 10 SSIYVRNLHPDTRPDDLRRMFGKYGRITDVYIPLDYYTREPRGFCYIYITFEDIRDAEDA 69
Query: 96 KYHMDGYLLLGRELTVVFAEENRK 119
Y++D +LLGREL V FAE +RK
Sbjct: 70 LYYLDRAMLLGRELEVQFAEGDRK 93
>gi|156086728|ref|XP_001610772.1| Ser/Arg-rich splicing factor [Babesia bovis T2Bo]
gi|154798025|gb|EDO07204.1| Ser/Arg-rich splicing factor, putative [Babesia bovis]
Length = 188
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 58/87 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRNL+++ P+ LR F +FG ++D+YLP DYYT +PRGFGFV++ +DA +A
Sbjct: 12 ASLLVRNLKYETSPDQLRAAFSRFGEIRDVYLPLDYYTRKPRGFGFVEFFSHSDADEAMR 71
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEM 124
M GY L G ++ V A+ R P +M
Sbjct: 72 EMFGYELDGNKIEVFVAKHGRSDPYQM 98
>gi|402853376|ref|XP_003891372.1| PREDICTED: serine/arginine-rich splicing factor 10 [Papio anubis]
Length = 261
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRG + + D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGL-LITFEDVRDAEDALH 68
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 69 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 99
>gi|226481705|emb|CAX79118.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 210
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 63/92 (68%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL +R+L CR +DLR FG++GR+ D+ +P D++TG +G+ F+++ +P DA DA Y
Sbjct: 6 SSLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHY 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+MD +GR++ V F RK P+EMR +ER
Sbjct: 66 YMDHTRFMGRDIEVEFTRGYRKTPAEMRLKER 97
>gi|226476570|emb|CAX72177.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481290|emb|CAX79110.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481296|emb|CAX79113.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 210
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 63/92 (68%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL +R+L CR +DLR FG++GR+ D+ +P D++TG +G+ F+++ +P DA DA Y
Sbjct: 6 SSLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHY 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+MD +GR++ V F RK P+EMR +ER
Sbjct: 66 YMDHTRFMGRDIEVEFTRGYRKTPAEMRLKER 97
>gi|29841102|gb|AAP06115.1| similar to NM_080743 serine-arginine repressor protein (35 kDa) in
Homo sapiens [Schistosoma japonicum]
gi|226476576|emb|CAX72180.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481266|emb|CAX79098.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481268|emb|CAX79099.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481270|emb|CAX79100.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481274|emb|CAX79102.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481276|emb|CAX79103.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481278|emb|CAX79104.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481280|emb|CAX79105.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481282|emb|CAX79106.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481284|emb|CAX79107.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481286|emb|CAX79108.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481288|emb|CAX79109.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481292|emb|CAX79111.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481294|emb|CAX79112.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481300|emb|CAX79114.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481699|emb|CAX79115.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481701|emb|CAX79116.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 210
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 63/92 (68%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL +R+L CR +DLR FG++GR+ D+ +P D++TG +G+ F+++ +P DA DA Y
Sbjct: 6 SSLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHY 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+MD +GR++ V F RK P+EMR +ER
Sbjct: 66 YMDHTRFMGRDIEVEFTRGYRKTPAEMRLKER 97
>gi|414877624|tpg|DAA54755.1| TPA: hypothetical protein ZEAMMB73_495943 [Zea mays]
Length = 474
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 50/64 (78%), Gaps = 2/64 (3%)
Query: 68 YLPRDYYTGE--PRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
YL +D G FGF+QY DP DA+DAKYHMDG +LLGRE+ VVFAEENRKKP++MR
Sbjct: 201 YLHKDNEKGNWNLEDFGFIQYFDPEDASDAKYHMDGKMLLGREIAVVFAEENRKKPADMR 260
Query: 126 ARER 129
ARE+
Sbjct: 261 AREK 264
>gi|448878344|gb|AGE46135.1| arginine/serine-rich splicing factor SCL25A transcript III
[Sorghum bicolor]
Length = 78
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 66/73 (90%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFG 62
GRSY YSPSPPR Y RR RSPSPRG YGGRGRDLPTSLLVRNLR DCRP+DLR PFG+FG
Sbjct: 2 GRSYDYSPSPPRGYRRRTRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPDDLRRPFGKFG 61
Query: 63 RLKDIYLPRDYYT 75
R+KDIYLP+DYYT
Sbjct: 62 RVKDIYLPKDYYT 74
>gi|226481272|emb|CAX79101.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 210
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 63/92 (68%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL +R+L CR +DLR FG++GR+ D+ +P D++TG +G+ F+++ +P DA DA Y
Sbjct: 6 SSLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFGNPRDAEDAHY 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+MD +GR++ V F RK P+EMR +ER
Sbjct: 66 YMDHTRFMGRDIEVEFTRGYRKTPAEMRLKER 97
>gi|67623223|ref|XP_667894.1| splicing factor [Cryptosporidium hominis TU502]
gi|54659062|gb|EAL37659.1| splicing factor [Cryptosporidium hominis]
Length = 330
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 59/96 (61%)
Query: 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
RD SLL+R+LR D +R F +FG ++D+YLP DY + PRGFGFV+Y++ DA
Sbjct: 8 NRDPRRSLLIRSLRFDTPTSLVRREFERFGAIRDVYLPLDYRSRRPRGFGFVEYVEEEDA 67
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A MDG L G + V FA+E RK P MR RE
Sbjct: 68 RAALEKMDGATLDGVTINVTFAQEGRKSPESMRHRE 103
>gi|32398853|emb|CAD98563.1| splicing factor, possible [Cryptosporidium parvum]
Length = 330
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 59/96 (61%)
Query: 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
RD SLL+R+LR D +R F +FG ++D+YLP DY + PRGFGFV+Y++ DA
Sbjct: 8 NRDPRRSLLIRSLRFDTPTSLVRREFERFGAIRDVYLPLDYRSRRPRGFGFVEYVEEEDA 67
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A MDG L G + V FA+E RK P MR RE
Sbjct: 68 RAALEKMDGATLDGVTINVTFAQEGRKSPESMRHRE 103
>gi|346469351|gb|AEO34520.1| hypothetical protein [Amblyomma maculatum]
Length = 204
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 57/85 (67%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL +RN+ RP+DLR FG++G L D+Y+P DYYT PRGF +VQ+ D DA DA Y
Sbjct: 11 SSLFIRNVPDGTRPDDLRSLFGKYGPLTDVYIPVDYYTRRPRGFAYVQFEDLRDAEDAMY 70
Query: 98 HMDGYLLLGRELTVVFAEENRKKPS 122
+D GREL + FA+ +RK PS
Sbjct: 71 SLDRTRFYGRELEIEFAQGDRKTPS 95
>gi|256076749|ref|XP_002574672.1| serine/arginine rich splicing factor [Schistosoma mansoni]
gi|360045341|emb|CCD82889.1| putative serine/arginine rich splicing factor [Schistosoma mansoni]
Length = 210
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 63/92 (68%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL +R+L CR +DLR FG++GR+ D+ +P D++TG +G+ F+++ +P DA DA Y
Sbjct: 6 SSLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHY 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+MD +GR++ V F RK P+EMR +ER
Sbjct: 66 YMDHTRFMGRDIEVEFTRGYRKTPAEMRLKER 97
>gi|226481703|emb|CAX79117.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 115
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 63/92 (68%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL +R+L CR +DLR FG++GR+ D+ +P D++TG +G+ F+++ +P DA DA Y
Sbjct: 6 SSLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHY 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+MD +GR++ V F RK P+EMR +ER
Sbjct: 66 YMDHTRFMGRDIEVEFTRGYRKTPAEMRLKER 97
>gi|294947288|ref|XP_002785313.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
gi|239899086|gb|EER17109.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
Length = 281
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 30 GGRG--RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87
GGRG R+ SLLVRNL + P LR F +FG ++D+Y+P DYY+ PRGFGFV++
Sbjct: 135 GGRGGAREGSCSLLVRNLPDEVNPMRLRDAFERFGYVRDVYIPLDYYSKRPRGFGFVEFD 194
Query: 88 DPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
DP DA +A+ MDG L + V A++ RK P MR
Sbjct: 195 DPRDADEARDAMDGQRLGSNYVEVEVAKQRRKSPRTMR 232
>gi|226476572|emb|CAX72178.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226476574|emb|CAX72179.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 125
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 63/92 (68%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL +R+L CR +DLR FG++GR+ D+ +P D++TG +G+ F+++ +P DA DA Y
Sbjct: 6 SSLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHY 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+MD +GR++ V F RK P+EMR +ER
Sbjct: 66 YMDHTRFMGRDIEVEFTRGYRKTPAEMRLKER 97
>gi|194685575|ref|XP_001788719.1| PREDICTED: serine/arginine-rich splicing factor 12, partial [Bos
taurus]
Length = 145
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 7/99 (7%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDPA 90
TSL VRN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D
Sbjct: 10 TSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFYFIFEDVR 69
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 DAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 108
>gi|66475620|ref|XP_627626.1| RRM domain containing protein; T22E16.120 Sc35-like splicing factor
[Cryptosporidium parvum Iowa II]
gi|46229295|gb|EAK90144.1| RRM domain containing protein; T22E16.120 Sc35-like splicing factor
[Cryptosporidium parvum Iowa II]
Length = 344
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 59/96 (61%)
Query: 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
RD SLL+R+LR D +R F +FG ++D+YLP DY + PRGFGFV+Y++ DA
Sbjct: 22 NRDPRRSLLIRSLRFDTPTSLVRREFERFGAIRDVYLPLDYRSRRPRGFGFVEYVEEEDA 81
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A MDG L G + V FA+E RK P MR RE
Sbjct: 82 RAALEKMDGATLDGVTINVTFAQEGRKSPESMRHRE 117
>gi|170585176|ref|XP_001897362.1| RNA recognition motif domain containing protein [Brugia malayi]
gi|158595237|gb|EDP33806.1| RNA recognition motif domain containing protein [Brugia malayi]
Length = 340
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 8/124 (6%)
Query: 26 RGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQ 85
RG Y R ++PT L VR + + RP+DLR F Q G ++D+Y+P DYYT E RGF +V+
Sbjct: 5 RGSY--RDDEIPT-LYVRQVHYSARPDDLRALFEQMGPVRDVYIPLDYYTRESRGFAYVK 61
Query: 86 YIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRY-S 144
+ DA DA ++G +LGR + V +AE RK +EMRAR+ SY+ R RY S
Sbjct: 62 FEFTRDAEDALRELNGTSILGRRIEVEWAEGQRKTKTEMRARD----SYNSYRVRNRYRS 117
Query: 145 RSPH 148
RSP+
Sbjct: 118 RSPY 121
>gi|357017461|gb|AET50759.1| hypothetical protein [Eimeria tenella]
Length = 196
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 9/131 (6%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRNL + PE +R F G +KD+YLP DY++ PRGFGFV++ DA A
Sbjct: 10 MSLLVRNLSYQTSPEAVRSAFAVHGSVKDVYLPLDYHSRMPRGFGFVEFWHREDAERALE 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYSRSP 157
MDG+ L G+ + V A++ R P +M+ R+ R R PR R R YSR
Sbjct: 70 KMDGFELDGKAIEVAIAKKGRSAPQQMKQRDERGR----REGSPR-GRRYEDERRYSR-- 122
Query: 158 DYYSPPPRRGR 168
PPRRGR
Sbjct: 123 --MDSPPRRGR 131
>gi|241100004|ref|XP_002409732.1| conserved hypothetical protein [Ixodes scapularis]
gi|215492805|gb|EEC02446.1| conserved hypothetical protein [Ixodes scapularis]
Length = 211
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-IDPADAADAK 96
+SL VRNL RPEDLR F + G L D+Y+P DY+T PRGFG+VQY + DA DAK
Sbjct: 11 SSLFVRNLPDGTRPEDLRSFFSKHGPLTDVYIPMDYHTRRPRGFGYVQYPLYLRDAEDAK 70
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEM 124
Y +D GRE+ + FA +RK P+EM
Sbjct: 71 YALDKARFCGREIEIEFARGDRKTPTEM 98
>gi|70942643|ref|XP_741463.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519859|emb|CAH77253.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 254
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL+RNL + P+ +R F FG+++D+YLP D+YT PRGFGFV+Y DP A +A
Sbjct: 6 CSLLIRNLSFETSPDKVRKIFEHFGKIRDVYLPLDHYTRRPRGFGFVEYYDPKHAKEALN 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
++ + G+E+ ++ A+ RK P M+
Sbjct: 66 ILNNSKIDGKEIRIIVAQNRRKSPDTMK 93
>gi|84996673|ref|XP_953058.1| RNA-binding protein [Theileria annulata strain Ankara]
gi|65304054|emb|CAI76433.1| RNA-binding protein, putative [Theileria annulata]
Length = 245
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 55/86 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S L+RNLR P+ +R F +FG+++D+YLP D+ T PRGFGFV++ D ADA DA
Sbjct: 8 STLLRNLRFSTSPQVVREAFEKFGKIRDVYLPLDFNTRRPRGFGFVEFYDKADALDAVRA 67
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEM 124
MD L G +T A++ RK PS M
Sbjct: 68 MDNTELDGSVITCCIAQDRRKSPSSM 93
>gi|429329487|gb|AFZ81246.1| RNA recognition motif domain-containing protein [Babesia equi]
Length = 212
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLL+RNLR+ P+ ++ F +FGR++D+YLP DY T PRGFGFV+Y + D +A
Sbjct: 8 SLLIRNLRYSTSPQIVKETFERFGRIRDVYLPLDYNTRRPRGFGFVEYYEKEDVLEAVKA 67
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSR 132
MD L G +T A++ RK P+ MR R SR
Sbjct: 68 MDNADLDGSVITCCLAQDRRKSPNSMRRAYRGSR 101
>gi|71028770|ref|XP_764028.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350982|gb|EAN31745.1| hypothetical protein, conserved [Theileria parva]
Length = 245
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 55/86 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S L+RNLR P+ +R F +FG+++D+YLP D+ T PRGFGFV++ D ADA DA
Sbjct: 8 STLLRNLRFSTSPQVVREAFEKFGKIRDVYLPLDFNTRRPRGFGFVEFYDKADALDAVRA 67
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEM 124
MD L G +T A++ RK PS M
Sbjct: 68 MDNTELDGSVITCCIAQDRRKSPSSM 93
>gi|344264100|ref|XP_003404132.1| PREDICTED: serine/arginine-rich splicing factor 12-like [Loxodonta
africana]
Length = 387
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 58/80 (72%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109
+PEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA Y+++ + GR++
Sbjct: 148 QPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 207
Query: 110 TVVFAEENRKKPSEMRARER 129
+ FA+ +RK P +M+++ER
Sbjct: 208 EIQFAQGDRKTPGQMKSKER 227
>gi|241779177|ref|XP_002399858.1| splicing factor SC35, putative [Ixodes scapularis]
gi|215508537|gb|EEC17991.1| splicing factor SC35, putative [Ixodes scapularis]
Length = 209
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY---IDPA-DAA 93
+SL +RN+ RPEDLR FG++G + D+Y+P DYY PRGF +VQY +D DA
Sbjct: 11 SSLFIRNVPDGTRPEDLRSLFGKYGPITDVYIPVDYYARRPRGFAYVQYPLFLDHLRDAE 70
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
DA Y +D GREL + FA+ +RK PSEM
Sbjct: 71 DAMYSLDRTRFYGRELEIEFAQGDRKTPSEM 101
>gi|395521768|ref|XP_003764987.1| PREDICTED: serine/arginine-rich splicing factor 10 [Sarcophilus
harrisii]
Length = 347
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 60/89 (67%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +++
Sbjct: 97 LRVWRLVKDAGSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 156
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
D + GR++ + FA+ +RK P++M+A+E
Sbjct: 157 DRKWICGRQIEIQFAQGDRKTPNQMKAKE 185
>gi|403224014|dbj|BAM42144.1| Ser/Arg-rich splicing factor [Theileria orientalis strain Shintoku]
Length = 267
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 54/86 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S LVRNLR P+ +R F +FG+++D+YLP D+ T PRGFGFV+Y + +DA DA
Sbjct: 8 STLVRNLRFSTTPQVVREAFERFGKIRDVYLPLDFNTKRPRGFGFVEYYEKSDAVDAVKA 67
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEM 124
MD L G + A++ RK PS M
Sbjct: 68 MDNTDLDGSIINCCLAQDRRKSPSSM 93
>gi|47209886|emb|CAF94406.1| unnamed protein product [Tetraodon nigroviridis]
Length = 98
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI--DPADAADA 95
TSL VRN+ + RPEDLR FG++G + D+Y+P D+YT +PRGF ++QYI D DA DA
Sbjct: 10 TSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYTRQPRGFAYIQYIFEDVRDAEDA 69
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPS 122
+ +D + GR++ + FA+ +RK S
Sbjct: 70 LHSLDRKWVCGRQIEIQFAQGDRKSKS 96
>gi|301106558|ref|XP_002902362.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098982|gb|EEY57034.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 373
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQ-FGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
RGR P SLLVRNL D ++LR F + G + D+Y+P++Y + PRGF F+++ D
Sbjct: 105 RGRREPISLLVRNLSPDTTGDELRRAFSRRAGDILDVYIPKEYSSNRPRGFAFIEFADAR 164
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
D K+ MD L GRE+ V+FA+++RK P EMR
Sbjct: 165 VGRDVKFEMDRTQLGGREIAVLFAKQHRKSPQEMR 199
>gi|354485618|ref|XP_003504980.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Cricetulus
griseus]
Length = 172
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 60/89 (67%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V L R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +++
Sbjct: 1 MYVEILEACFRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 60
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
D + GR++ + FA+ +RK P++M+A+E
Sbjct: 61 DRKWICGRQIEIQFAQGDRKTPNQMKAKE 89
>gi|301774570|ref|XP_002922705.1| PREDICTED: splicing factor, arginine/serine-rich 13B-like
[Ailuropoda melanoleuca]
Length = 269
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 8/100 (8%)
Query: 38 TSLLV-RNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDP 89
TSL V R R RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D
Sbjct: 10 TSLFVSRARRPGDRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFYFIFEDV 69
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 RDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 109
>gi|393906773|gb|EFO27553.2| hypothetical protein LOAG_00933 [Loa loa]
Length = 344
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
R ++PT L VR + + RP+DLR F + G ++D+Y+P DYYT E RGF +V++ D
Sbjct: 9 RDDEIPT-LYVRQVHYSARPDDLRALFERMGPVRDVYIPLDYYTRESRGFAYVKFEFTRD 67
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRY-SRSPH 148
A DA ++G +LGR + V +AE RK +EMRAR+ SY R RY SRSPH
Sbjct: 68 AEDALRKLNGASILGRPIEVEWAEGQRKTKTEMRARD----SYSSYRVRNRYRSRSPH 121
>gi|237832865|ref|XP_002365730.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|211963394|gb|EEA98589.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
Length = 208
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 59/88 (67%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL+RNL + P+ +R F +FGR++D+YLP D++T PRGFGFV++ + + A +A
Sbjct: 5 CSLLIRNLCFETSPDRVRQIFEKFGRVRDVYLPLDHFTKRPRGFGFVEFYEESTAQEAMR 64
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
MD ++ G E+ V+ A++ RK P MR
Sbjct: 65 EMDRTMIDGNEVHVIIAQDRRKSPETMR 92
>gi|221488187|gb|EEE26401.1| hypothetical protein TGGT1_109290 [Toxoplasma gondii GT1]
gi|221508700|gb|EEE34269.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 208
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 59/88 (67%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL+RNL + P+ +R F +FGR++D+YLP D++T PRGFGFV++ + + A +A
Sbjct: 5 CSLLIRNLCFETSPDRVRQIFEKFGRVRDVYLPLDHFTKRPRGFGFVEFYEESTAQEAMR 64
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
MD ++ G E+ V+ A++ RK P MR
Sbjct: 65 EMDRTMIDGNEVHVIIAQDRRKSPETMR 92
>gi|159471227|ref|XP_001693758.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283261|gb|EDP09012.1| predicted protein [Chlamydomonas reinhardtii]
Length = 86
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+LVRN+ +DLR F +FG L+D+Y+PRDYYT RGFGF+++ D DA +A Y
Sbjct: 1 SVLVRNIPLHMTVDDLRKKFEKFGELRDVYIPRDYYTQRSRGFGFIEFRDARDADEAIYQ 60
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEM 124
+D + GRE+ V ++E RK P +M
Sbjct: 61 LDKTSIDGREINVCLSKEGRKTPRDM 86
>gi|323448916|gb|EGB04809.1| hypothetical protein AURANDRAFT_17068, partial [Aureococcus
anophagefferens]
Length = 112
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
R+ S+LVRNL EDLR F +FG +KD+Y+P DY T EPRGF F++ A+A
Sbjct: 9 REEGVSVLVRNLTFKLSKEDLREEFEKFGSVKDVYIPLDYMTREPRGFAFIEMSCKAEAD 68
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
+A +DG L GR + V+ A + RK+P EM
Sbjct: 69 EAIAGLDGKDLDGRVIKVLLAAQKRKRPEEM 99
>gi|326933179|ref|XP_003212685.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Meleagris
gallopavo]
Length = 278
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 8/101 (7%)
Query: 36 LPTSLLVRNLRHDCR--------PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87
L + +V L+ CR EDLR FG++G + D+Y+P D+YT PRGF +VQ+
Sbjct: 75 LRNNYVVAKLKRTCRGLAERSSQSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 134
Query: 88 DPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
D DA DA +++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 135 DVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 175
>gi|389583810|dbj|GAB66544.1| RNA binding protein [Plasmodium cynomolgi strain B]
Length = 1084
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL++NL PE +R F FG+++D+YLP D+YT PRGFGFV+Y +P A +A
Sbjct: 6 CSLLIKNLSFHTSPEKIRKIFQSFGKIRDVYLPLDHYTRRPRGFGFVEYYEPEYAKEAMS 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
++ + G+E+ ++ A+ RK P M+
Sbjct: 66 ILNHSKIDGKEIKIIIAQNRRKSPETMK 93
>gi|410966510|ref|XP_003989775.1| PREDICTED: serine/arginine-rich splicing factor 10 [Felis catus]
Length = 191
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 57/79 (72%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109
R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +++D + GR++
Sbjct: 40 RSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQI 99
Query: 110 TVVFAEENRKKPSEMRARE 128
+ FA+ +RK P++M+A+E
Sbjct: 100 EIQFAQGDRKTPNQMKAKE 118
>gi|351699563|gb|EHB02482.1| 35 kDa SR repressor protein, partial [Heterocephalus glaber]
Length = 246
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 6/86 (6%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY------IDPADAADAKYHMDGYL 103
RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D DA DA Y+++
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFFIFEDVRDAEDALYNLNRKW 60
Query: 104 LLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 61 VCGRQIEIQFAQGDRKTPGQMKSKER 86
>gi|399217453|emb|CCF74340.1| unnamed protein product [Babesia microti strain RI]
Length = 203
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
GGR SLLVRNL+++ PE LR F +FG ++D+Y+P +YYT +PRGFGFV++ D
Sbjct: 31 GGR----TMSLLVRNLKYETTPEILREAFEKFGPIRDVYIPLEYYTKKPRGFGFVEFHDF 86
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 124
DA A MDG L G ++ V A+ R P +M
Sbjct: 87 RDANMALREMDGGELDGNKIEVFAAKRGRSDPYQM 121
>gi|397567508|gb|EJK45626.1| hypothetical protein THAOC_35749 [Thalassiosira oceanica]
Length = 359
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 7/97 (7%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPR-------GFGFVQYIDPA 90
SLLVRN+ + +DL+ F + G ++D+Y+P DY++ +P+ GF F++Y PA
Sbjct: 154 VSLLVRNVSSEITSQDLQQAFSRIGEVRDVYIPMDYHSHQPKVRAFNDPGFAFIEYATPA 213
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
A +A+ MD + + G L VVFA++ RK P EMR R
Sbjct: 214 MAREAREEMDRFKIKGCNLEVVFAQQKRKTPHEMRGR 250
>gi|114613263|ref|XP_519086.2| PREDICTED: uncharacterized protein LOC463398 isoform 2 [Pan
troglodytes]
Length = 293
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D +DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRSDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR---------RSPPRYSR 145
A+ MDG +L GREL V A R+ E RS+ GR SR
Sbjct: 71 AEAAMDGAVLDGRELRVQMARYGRRDLPRSSQEEPSGRSWGGRYGRRSRSPRGRHRSQSR 130
Query: 146 SPHYARGYSRSP---DYYSPPP-RRGRDSRSISPRYRR--YRERSYSRSPY 190
P Y++ SRS YSP P RR R SRS YRR YR Y RSPY
Sbjct: 131 GPSYSKSRSRSHYGGSGYSPSPYRRSRYSRSP---YRRSHYRGSRYGRSPY 178
>gi|156098735|ref|XP_001615383.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148804257|gb|EDL45656.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 1057
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL++NL PE +R F FGR++D+YLP D+YT PRGFGFV+Y +P A +A
Sbjct: 6 CSLLIKNLSFHTSPEKIRKIFQSFGRIRDVYLPLDHYTRRPRGFGFVEYYEPQYAKEALT 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
++ + G+E+ ++ A+ RK P M+
Sbjct: 66 ILNHSKIDGKEIKIIIAQNRRKSPETMK 93
>gi|401408831|ref|XP_003883864.1| CBR-RSP-4 protein, related [Neospora caninum Liverpool]
gi|325118281|emb|CBZ53832.1| CBR-RSP-4 protein, related [Neospora caninum Liverpool]
Length = 192
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 59/88 (67%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL+RNL + P+ +R F +FGR++D+YLP D++T PRGFGFV++ + A A +A
Sbjct: 5 CSLLIRNLCFETSPDRVRQIFEKFGRVRDVYLPLDHFTKRPRGFGFVEFYEEAAAQEAMR 64
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
MD ++ G E+ V+ A++ RK P MR
Sbjct: 65 EMDRTMIDGNEVYVIIAQDRRKSPETMR 92
>gi|338721847|ref|XP_001504243.3| PREDICTED: serine/arginine-rich splicing factor 10 [Equus caballus]
Length = 153
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +++D + GR++ +
Sbjct: 4 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 63
Query: 112 VFAEENRKKPSEMRARE 128
FA+ +RK P++M+A+E
Sbjct: 64 QFAQGDRKTPNQMKAKE 80
>gi|68065706|ref|XP_674837.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56493667|emb|CAH97904.1| conserved hypothetical protein [Plasmodium berghei]
Length = 245
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL+RNL + P+ +R F FG+++D+YLP D+YT PRGFGFV+Y DP A +A
Sbjct: 6 CSLLIRNLSFET-PDKVRKIFEHFGKIRDVYLPLDHYTRRPRGFGFVEYYDPKHAKEALN 64
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
++ + G+E+ ++ A+ RK P M+
Sbjct: 65 ILNNSKIDGKEIRIIVAQNRRKSPDTMK 92
>gi|410959688|ref|XP_003986434.1| PREDICTED: serine/arginine-rich splicing factor 12 [Felis catus]
Length = 285
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 10/97 (10%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDPADA 92
LL NL +PEDLR FG++G + D+Y+P D+YT PRGF +VQY D DA
Sbjct: 32 LLNHNLY---KPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFYFIFEDVRDA 88
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 89 EDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 125
>gi|255084900|ref|XP_002504881.1| predicted protein [Micromonas sp. RCC299]
gi|226520150|gb|ACO66139.1| predicted protein [Micromonas sp. RCC299]
Length = 85
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLVR L D R E+L F ++G++ D+Y+PRDYYT P+G FVQ+ +P +AADA+
Sbjct: 1 SLLVRQLPPDARAEELEEAFSKYGKVIDVYIPRDYYTKRPKGIAFVQFPNPEEAADAERA 60
Query: 99 MDGYLLLGRE-LTVVFAEENRKKPS 122
+DG L G E ++V A + RK PS
Sbjct: 61 LDGTTLCGVENISVQVALQKRKDPS 85
>gi|426222784|ref|XP_004005562.1| PREDICTED: serine/arginine-rich splicing factor 10 [Ovis aries]
Length = 225
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +++D + GR++ +
Sbjct: 66 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 125
Query: 112 VFAEENRKKPSEMRARE 128
FA+ +RK P++M+A+E
Sbjct: 126 QFAQGDRKTPNQMKAKE 142
>gi|395849978|ref|XP_003797581.1| PREDICTED: serine/arginine-rich splicing factor 12 [Otolemur
garnettii]
Length = 366
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 8/88 (9%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--------IDPADAADAKYHMDG 101
RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D DA DA Y+++
Sbjct: 119 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFTLVIFEDVRDAEDALYNLNR 178
Query: 102 YLLLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 179 KWVCGRQIEIQFAQGDRKTPGQMKSKER 206
>gi|168042827|ref|XP_001773888.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674732|gb|EDQ61236.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 46/54 (85%)
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERF 130
+PRGFGFVQ++DP DAA+A+Y++D + GRE+T+VFAEENRK+P EMR +ER
Sbjct: 156 QPRGFGFVQFLDPQDAAEAQYYLDHEFIAGREITIVFAEENRKRPQEMRLKERV 209
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 55/89 (61%), Gaps = 16/89 (17%)
Query: 1 MRGRSYSYS-----PSPPRD-YGRRYRSPSPRGHYGGRGR-------DLPTSLLVRNLRH 47
MRGRS YS SPPR YG R RS SP GRGR + PTSLLVRN+
Sbjct: 1 MRGRSPYYSDRRGYSSPPRSGYGGRRRSLSP---LPGRGRGDYVREPEPPTSLLVRNIPR 57
Query: 48 DCRPEDLRGPFGQFGRLKDIYLPRDYYTG 76
D +DLR PF ++G +KD+YLPRDYYTG
Sbjct: 58 DFTADDLRIPFERYGAIKDVYLPRDYYTG 86
>gi|324520554|gb|ADY47664.1| Serine/arginine-rich splicing factor 12 [Ascaris suum]
Length = 183
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 60/99 (60%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D T+L VR + + RPEDLR F + G ++D+Y+P DYYT E RGF +V+Y DA
Sbjct: 11 DEGTTLYVRQVHYAARPEDLRTLFERMGPVRDVYIPLDYYTHESRGFAYVKYEYVGDAER 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRS 133
A + G +LGR + + +A+ RK +EMR +E + +
Sbjct: 71 AYKQLHGCAILGRRIAIDWAQGERKTKAEMREKEEMAHA 109
>gi|281344246|gb|EFB19830.1| hypothetical protein PANDA_011704 [Ailuropoda melanoleuca]
Length = 241
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGF-VQYIDPADAADAKYHMDGYLLLGRE 108
RPEDLR FG++G + D+Y+P D+YT PRGF + V + D DA DA Y+++ + GR+
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYLVIFEDVRDAEDALYNLNRKWVCGRQ 60
Query: 109 LTVVFAEENRKKPSEMRARER 129
+ + FA+ +RK P +M+++ER
Sbjct: 61 IEIQFAQGDRKTPGQMKSKER 81
>gi|291396606|ref|XP_002714518.1| PREDICTED: serine-arginine repressor protein-like [Oryctolagus
cuniculus]
Length = 248
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDPADAADAKYHMDGY 102
+PEDLR FG++G + D+Y+P D+YT PRGF +VQY D DA DA Y+++
Sbjct: 2 KPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFYFIFEDVRDAEDALYNLNRK 61
Query: 103 LLLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 62 WVCGRQIEIQFAQGDRKTPGQMKSKER 88
>gi|403261884|ref|XP_003923335.1| PREDICTED: serine/arginine-rich splicing factor 12 [Saimiri
boliviensis boliviensis]
Length = 271
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 18/114 (15%)
Query: 23 PSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG 82
P+PR H GRG +PEDLR FG++G + D+Y+P D+YT PRGF
Sbjct: 9 PAPR-HTSGRGTSFTGG----------QPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFA 57
Query: 83 FVQY-------IDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+VQY D DA DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 58 YVQYPLFYFIFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 111
>gi|440911383|gb|ELR61059.1| Serine/arginine-rich splicing factor 12, partial [Bos grunniens
mutus]
Length = 241
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGF-VQYIDPADAADAKYHMDGYLLLGRE 108
RPEDLR FG++G + D+Y+P D+YT PRGF + V + D DA DA Y+++ + GR+
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYLVIFEDVRDAEDALYNLNRKWVCGRQ 60
Query: 109 LTVVFAEENRKKPSEMRARER 129
+ + FA+ +RK P +M+++ER
Sbjct: 61 IEIQFAQGDRKTPGQMKSKER 81
>gi|395534618|ref|XP_003769337.1| PREDICTED: serine/arginine-rich splicing factor 12 [Sarcophilus
harrisii]
Length = 317
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 22/132 (16%)
Query: 12 PPRDYGRRYRSPSPRGHY-GGR--GR--DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD 66
PP G SP+P+ Y GGR GR P++ + RPEDLR FG++G + D
Sbjct: 47 PPEPEGLANTSPTPQFKYVGGRSPGRRGSRPSNTI--------RPEDLRREFGRYGPIVD 98
Query: 67 IYLPRDYYTGEPRGFGFVQY---------IDPADAADAKYHMDGYLLLGRELTVVFAEEN 117
+Y+P D+YT PRGF +VQY D DA DA Y+++ + GR++ + FA+ +
Sbjct: 99 VYIPLDFYTRRPRGFAYVQYPLFHSLVIFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGD 158
Query: 118 RKKPSEMRARER 129
RK P +M+++ER
Sbjct: 159 RKTPGQMKSKER 170
>gi|431838154|gb|ELK00086.1| 35 kDa SR repressor protein, partial [Pteropus alecto]
Length = 241
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGF-VQYIDPADAADAKYHMDGYLLLGRE 108
RPEDLR FG++G + D+Y+P D+YT PRGF + V + D DA DA Y+++ + GR+
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYLVIFEDVRDAEDALYNLNRKWVCGRQ 60
Query: 109 LTVVFAEENRKKPSEMRARER 129
+ + FA+ +RK P +M+++ER
Sbjct: 61 IEIQFAQGDRKTPGQMKSKER 81
>gi|348563359|ref|XP_003467475.1| PREDICTED: serine/arginine-rich splicing factor 12-like [Cavia
porcellus]
Length = 422
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 6/86 (6%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY------IDPADAADAKYHMDGYL 103
RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D DA DA Y+++
Sbjct: 177 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFFIFEDVRDAEDALYNLNRKW 236
Query: 104 LLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 237 VCGRQIEIQFAQGDRKTPGQMKSKER 262
>gi|397504738|ref|XP_003822938.1| PREDICTED: serine/arginine-rich splicing factor 12 [Pan paniscus]
gi|426353976|ref|XP_004044448.1| PREDICTED: serine/arginine-rich splicing factor 12 [Gorilla gorilla
gorilla]
Length = 257
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDPADAADAKYHMDGY 102
+PEDLR FG++G + D+Y+P D+YT PRGF +VQY D DA DA Y+++
Sbjct: 11 QPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFYFIFEDVRDAEDALYNLNRK 70
Query: 103 LLLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 71 WVCGRQIEIQFAQGDRKTPGQMKSKER 97
>gi|332218114|ref|XP_003258205.1| PREDICTED: serine/arginine-rich splicing factor 12 [Nomascus
leucogenys]
Length = 249
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-------IDPADAADAKYHMDGY 102
+PEDLR FG++G + D+Y+P D+YT PRGF +VQY D DA DA Y+++
Sbjct: 3 QPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFYFIFEDVRDAEDALYNLNRK 62
Query: 103 LLLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 63 WVCGRQIEIQFAQGDRKTPGQMKSKER 89
>gi|355561899|gb|EHH18531.1| hypothetical protein EGK_15157, partial [Macaca mulatta]
gi|355757706|gb|EHH61231.1| hypothetical protein EGM_19190, partial [Macaca fascicularis]
Length = 241
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGF-VQYIDPADAADAKYHMDGYLLLGRE 108
RPEDLR FG++G + D+Y+P D+YT PRGF + V + D DA DA Y+++ + GR+
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYLVIFEDVRDAEDALYNLNRKWVCGRQ 60
Query: 109 LTVVFAEENRKKPSEMRARER 129
+ + FA+ +RK P +M+++ER
Sbjct: 61 IEIQFAQGDRKTPGQMKSKER 81
>gi|221056270|ref|XP_002259273.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|193809344|emb|CAQ40046.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 946
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLL++NL P+ +R F FG+++D+YLP D+YT PRGFGFV+Y +P A +A
Sbjct: 6 CSLLIKNLSFHTSPDKIRKIFQSFGKVRDVYLPLDHYTRRPRGFGFVEYYEPQYAKEALI 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
++ + G E+ ++ A+ RK P M+
Sbjct: 66 TLNHTKIDGNEVKIIIAQNRRKSPETMK 93
>gi|325191972|emb|CCA26441.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 248
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQF-GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
P SLLVRNL +DLR F + G ++D+Y+P+D+ T E R F FV++ D +A +
Sbjct: 142 PQSLLVRNLNPKTTGDDLRRAFSRRPGDIRDVYIPKDHSTNELRTFAFVEFRDAREAREV 201
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
KY MD L G E+ V+FA++ RK P +MR
Sbjct: 202 KYEMDRTTLDGNEIAVLFAQQRRKTPDQMR 231
>gi|399216355|emb|CCF73043.1| unnamed protein product [Babesia microti strain RI]
Length = 298
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+LVRNL PE +R F +FG ++D+YLP D++T +PRGFGFV++ A +A
Sbjct: 9 SVLVRNLLETTTPELVRETFEKFGEIRDVYLPTDFFTHKPRGFGFVEFYKLESAKEAVKE 68
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSP 140
MD + G ++V A++ RK P MR RFS G P
Sbjct: 69 MDNKTIDGATVSVTPAQDRRKSPESMR---RFSSRNQGSHIP 107
>gi|73973899|ref|XP_532229.2| PREDICTED: serine/arginine-rich splicing factor 12 [Canis lupus
familiaris]
Length = 326
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 8/88 (9%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--------IDPADAADAKYHMDG 101
RPEDLR FG++G + D+Y+P D+YT PRGF +VQY D DA DA Y+++
Sbjct: 79 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFSLVIFEDVRDAEDALYNLNR 138
Query: 102 YLLLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 139 KWVCGRQIEIQFAQGDRKTPGQMKSKER 166
>gi|338710589|ref|XP_001915964.2| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 12 [Equus caballus]
Length = 284
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 9/88 (10%)
Query: 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY---------IDPADAADAKYHMDG 101
PEDLR FG++G + D+Y+P D+YT PRGF +VQY D DA DA Y+++
Sbjct: 37 PEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLSYRLVIFEDVRDAEDALYNLNR 96
Query: 102 YLLLGRELTVVFAEENRKKPSEMRARER 129
+ GR++ + FA+ +RK P +M+++ER
Sbjct: 97 KWVCGRQIEIQFAQGDRKTPGQMKSKER 124
>gi|326427558|gb|EGD73128.1| hypothetical protein PTSG_04841 [Salpingoeca sp. ATCC 50818]
Length = 285
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V NL +D + D+ FG+FG++KD++LP TG RGFGFV + D +A DA+ M
Sbjct: 82 LFVGNLNYDTKVSDMEEAFGKFGKVKDVFLPMHRVTGTCRGFGFVTFADRTEAEDAEKGM 141
Query: 100 DGYLLLGRELTVVFA 114
+G LGRE+ V FA
Sbjct: 142 NGTTFLGREVAVNFA 156
>gi|348544446|ref|XP_003459692.1| PREDICTED: hypothetical protein LOC100710640 [Oreochromis
niloticus]
Length = 227
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 51/77 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFLDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|303282859|ref|XP_003060721.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458192|gb|EEH55490.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 93
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 58/85 (68%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLVRNL +D E++R F ++G ++D+Y+P+DY+T P+GF FV++ DP +A A+
Sbjct: 1 VSLLVRNLPYDATVEEIRTAFEEYGEVRDVYIPKDYHTKRPKGFAFVEFPDPREAELAED 60
Query: 98 HMDGYLLLGRELTVVFAEENRKKPS 122
+D L G E++V A++ RK PS
Sbjct: 61 KLDKTRLCGVEVSVQVAKQKRKDPS 85
>gi|397468421|ref|XP_003805885.1| PREDICTED: uncharacterized protein LOC100969202 [Pan paniscus]
Length = 293
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 86/171 (50%), Gaps = 18/171 (10%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+PR+ +T PR F FV++ D +DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRSFAFVRFHDRSDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR---------RSPPRYSR 145
A+ MDG +L GREL V A R+ E RS+ GR SR
Sbjct: 71 AEAAMDGAVLDGRELRVQMARYGRRDLPRSSQEEPSGRSWGGRYGRRSRSPRGRHRSQSR 130
Query: 146 SPHYARGYSRS----PDYYSPPPRRGRDSRSISPRYRR--YRERSYSRSPY 190
P Y++ SRS Y P RR R SRS YRR YR Y RSPY
Sbjct: 131 GPSYSKSRSRSHYGGSGYSRSPYRRSRYSRSP---YRRSHYRGSRYGRSPY 178
>gi|426235141|ref|XP_004011549.1| PREDICTED: serine/arginine-rich splicing factor 12 [Ovis aries]
Length = 301
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 5/83 (6%)
Query: 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-----IDPADAADAKYHMDGYLLLG 106
EDLR FG++G + D+Y+P D+YT PRGF +VQY D DA DA Y+++ + G
Sbjct: 59 EDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFIFEDVRDAEDALYNLNRKWVCG 118
Query: 107 RELTVVFAEENRKKPSEMRARER 129
R++ + FA+ +RK P +M+++ER
Sbjct: 119 RQIEIQFAQGDRKTPGQMKSKER 141
>gi|317419577|emb|CBN81614.1| Splicing factor, arginine/serine-rich 2 [Dicentrarchus labrax]
Length = 228
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 51/77 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFLDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|410929633|ref|XP_003978204.1| PREDICTED: uncharacterized protein LOC101070858 [Takifugu rubripes]
Length = 229
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 51/77 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFLDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|410925942|ref|XP_003976438.1| PREDICTED: uncharacterized protein LOC101074667 [Takifugu rubripes]
Length = 225
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 VSLKVDNLTYRTAPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFFDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|41946787|gb|AAH65971.1| Zgc:55876 protein [Danio rerio]
Length = 220
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 51/80 (63%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA D
Sbjct: 11 DGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 71 AMDAMDGAILDGRELRVQMA 90
>gi|428673153|gb|EKX74066.1| serine/arginine rich splicing factor, putative [Babesia equi]
Length = 183
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SLLV+NL+++ P+ +R F ++G ++D+YLP DYYT +PRGFGFV++ DA +A
Sbjct: 13 ISLLVKNLKYETSPDKVRSLFSRYGEIRDVYLPLDYYTKKPRGFGFVEFYKEEDADEALR 72
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEM 124
MDG + G ++ V A+ R P EM
Sbjct: 73 GMDGEEIDGNKVEVFPAKHGRSDPREM 99
>gi|307106096|gb|EFN54343.1| hypothetical protein CHLNCDRAFT_135593 [Chlorella variabilis]
Length = 224
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 34 RDLPT--SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
RD PT SLLVRNL D +DLR ++GR+KD+Y+P+DYYTG PRG FV++ D D
Sbjct: 5 RDPPTGCSLLVRNLAPDVSGDDLRYAAEKYGRVKDVYVPKDYYTGRPRGIAFVEFDDRRD 64
Query: 92 AADAKYHMDGYLLLGRELTVVFA 114
A DAKY MD +L E+ V FA
Sbjct: 65 AEDAKYGMDRSMLGSGEIAVQFA 87
>gi|355566974|gb|EHH23353.1| hypothetical protein EGK_06805 [Macaca mulatta]
Length = 287
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 57/94 (60%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+PR+++T PRGF FV++ D DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREHHTKAPRGFAFVRFHDRRDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A+ MDG L GREL V A R+ P R RE
Sbjct: 71 AEAAMDGAELDGRELRVQVARYGRRDPPRSRQRE 104
>gi|41054475|ref|NP_955945.1| serine/arginine-rich splicing factor 2b [Danio rerio]
gi|28278933|gb|AAH45480.1| Zgc:55876 [Danio rerio]
Length = 218
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 51/80 (63%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA D
Sbjct: 11 DGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 71 AMDAMDGAILDGRELRVQMA 90
>gi|427783535|gb|JAA57219.1| Putative splicing factor sr protein superfamily [Rhipicephalus
pulchellus]
Length = 401
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 50/80 (62%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D TSL V NL + PEDL+ F ++G + D+Y+PR YT E RGF FV++ D D D
Sbjct: 11 DGMTSLKVDNLTYRTTPEDLKRVFEKYGDVGDVYIPRHPYTRESRGFAFVRFYDKRDCED 70
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A +DGY+L GREL V A
Sbjct: 71 AMDSLDGYILDGRELRVQMA 90
>gi|348680240|gb|EGZ20056.1| hypothetical protein PHYSODRAFT_354260 [Phytophthora sojae]
Length = 251
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQ-FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
P SLLVRNL + ++LR F + G + D+Y+P++Y + PRGF F+++ D D
Sbjct: 80 PISLLVRNLSPETTQDELRRAFSRRAGDILDVYIPKEYNSNRPRGFAFIEFADSRVGRDI 139
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
K+ MD L RE+ V+FA+++RK P EMR
Sbjct: 140 KFEMDRTQLGDREIAVLFAKQHRKSPQEMR 169
>gi|332208823|ref|XP_003253510.1| PREDICTED: serine/arginine-rich splicing factor 8 [Nomascus
leucogenys]
Length = 303
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+P ++ T PRGF FV++ D +DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEHRTKAPRGFAFVRFHDWSDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR 137
A+ MDG +L GREL V A R+ S E RS+ GR
Sbjct: 71 AEAAMDGAVLDGRELRVQVARYGRRDLSGSSQEEPRGRSWGGR 113
>gi|47087067|ref|NP_998547.1| splicing factor, arginine/serine-rich 2 [Danio rerio]
gi|28279759|gb|AAH46045.1| Splicing factor, arginine/serine-rich 2 [Danio rerio]
Length = 225
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|351709838|gb|EHB12757.1| FUS-interacting serine-arginine-rich protein 1, partial
[Heterocephalus glaber]
Length = 262
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 37 PTSLLVRN-LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
P + VR + D R ED R FG G D+Y+P D+Y PRGF +VQ+ D DA D
Sbjct: 8 PQHVSVRQAVADDTRSEDSRREFGSCGPTVDVYVPLDFYIRRPRGFAYVQFEDVCDAEDV 67
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++D + G + + FA+ +RK P++M+ +ER
Sbjct: 68 LHNLDRKWICGHQTEIQFAQGDRKTPNQMKPKER 101
>gi|221219380|gb|ACM08351.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
gi|223647188|gb|ACN10352.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
gi|223673061|gb|ACN12712.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
Length = 212
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFSFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|223647184|gb|ACN10350.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
gi|223673057|gb|ACN12710.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
Length = 212
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFSFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|393906774|gb|EJD74392.1| hypothetical protein, variant [Loa loa]
Length = 324
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 5/100 (5%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109
RP+DLR F + G ++D+Y+P DYYT E RGF +V++ DA DA ++G +LGR +
Sbjct: 6 RPDDLRALFERMGPVRDVYIPLDYYTRESRGFAYVKFEFTRDAEDALRKLNGASILGRPI 65
Query: 110 TVVFAEENRKKPSEMRARERFSRSYDGRRSPPRY-SRSPH 148
V +AE RK +EMRAR+ SY R RY SRSPH
Sbjct: 66 EVEWAEGQRKTKTEMRARD----SYSSYRVRNRYRSRSPH 101
>gi|388494870|gb|AFK35501.1| unknown [Medicago truncatula]
Length = 93
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 65/81 (80%), Gaps = 5/81 (6%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRD-----LPTSLLVRNLRHDCRPEDLR 55
MRGRSYSYSPSPPR YG R RSPSPRG YGGR R LPTSLLVRNL DCRPEDL
Sbjct: 1 MRGRSYSYSPSPPRRYGGRRRSPSPRGRYGGRYRGGRDRDLPTSLLVRNLAKDCRPEDLH 60
Query: 56 GPFGQFGRLKDIYLPRDYYTG 76
PFGQFG +KD+YLPRDYYTG
Sbjct: 61 DPFGQFGPVKDVYLPRDYYTG 81
>gi|348509946|ref|XP_003442507.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Oreochromis
niloticus]
Length = 218
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPEALRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|209736008|gb|ACI68873.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
Length = 222
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFSFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|224074970|ref|XP_002194754.1| PREDICTED: serine/arginine-rich splicing factor 2 [Taeniopygia
guttata]
Length = 221
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|443726785|gb|ELU13844.1| hypothetical protein CAPTEDRAFT_222122 [Capitella teleta]
Length = 99
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY------IDPAD 91
TSL VRNL R E+LR FG++G + D+YLP D+YT PRGF ++QY DP D
Sbjct: 10 TSLYVRNLPDTSRSEELRSLFGKYGPISDVYLPLDFYTRRPRGFSYIQYPSVSKFKDPRD 69
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRK 119
A DA YH+D G +L + FA +RK
Sbjct: 70 AEDALYHLDRTRFFGCDLEIEFARGDRK 97
>gi|47604918|ref|NP_001001305.1| serine/arginine-rich splicing factor 2 [Gallus gallus]
gi|266991|sp|P30352.1|SRSF2_CHICK RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Protein PR264; AltName: Full=Splicing component, 35
kDa; AltName: Full=Splicing factor SC35; Short=SC-35;
AltName: Full=Splicing factor, arginine/serine-rich 2
gi|63752|emb|CAA44306.1| PR 264 [Gallus gallus]
gi|228503|prf||1805195A RNA-binding protein PR264
Length = 221
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|298707093|emb|CBJ29885.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_a
[Ectocarpus siliculosus]
Length = 289
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V N+ ++ +DLR F ++G L D+Y+PRD TGEPRGF FV+++D DA DA
Sbjct: 27 VTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAID 86
Query: 98 HMDGYLLLGRELTVVFAEENR 118
MDG GREL + +A++ R
Sbjct: 87 RMDGEFFAGRELRIQYAKKRR 107
>gi|414867727|tpg|DAA46284.1| TPA: hypothetical protein ZEAMMB73_663605 [Zea mays]
Length = 494
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
RP+DLR PFG+FG +KDIYLP+DYYT EPRGFGF+QY DP DA+D
Sbjct: 357 RPDDLRRPFGKFGPVKDIYLPKDYYTREPRGFGFIQYFDPEDASD 401
>gi|405969990|gb|EKC34930.1| 35 kDa SR repressor protein [Crassostrea gigas]
Length = 208
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 28/127 (22%)
Query: 38 TSLLVRNL----RHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY------- 86
+SL VRN+ R + E+LR FG++G L D+Y+P DYYT +PRGF +VQY
Sbjct: 10 SSLYVRNVPSTERAEEMAEELRALFGKYGPLTDVYVPVDYYTRDPRGFAYVQYPLFRLTK 69
Query: 87 -----------IDPA-DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
ID + DA DA YH+D G EL V FA +RK P++MR+++R
Sbjct: 70 SVLLLSSLVHVIDYSRDADDALYHLDRTRFYGMELEVEFARGDRKTPNQMRSKDR----- 124
Query: 135 DGRRSPP 141
GRRS P
Sbjct: 125 GGRRSSP 131
>gi|432949878|ref|XP_004084303.1| PREDICTED: uncharacterized protein LOC100049528 [Oryzias latipes]
Length = 239
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD Y+ E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYSKESRGFAFVRFFDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|198474085|ref|XP_001356555.2| GA18884 [Drosophila pseudoobscura pseudoobscura]
gi|198138240|gb|EAL33619.2| GA18884 [Drosophila pseudoobscura pseudoobscura]
Length = 207
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 20 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 79
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 80 ALEAMDGRMLDGRELRVQMA 99
>gi|387018630|gb|AFJ51433.1| Serine/arginine-rich splicing factor 2 [Crotalus adamanteus]
Length = 221
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|395743396|ref|XP_002822424.2| PREDICTED: uncharacterized protein LOC100448817 [Pongo abelii]
Length = 292
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + + LR F ++GR+ D+Y+PR+ +T PRGF FV++ +DA D
Sbjct: 11 DGMITLKVDNLTYRTSHDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHHRSDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR---------RSPPRYSR 145
A+ MD +L GREL V A R+ E RS+ GR SR
Sbjct: 71 AEAAMDRAMLDGRELRVQMALYGRRDLPRSSQEEPRGRSWGGRYGRRSRSPRGRHRSQSR 130
Query: 146 SPHYARGYSRSP---DYYSPPPRRGRDSRSISPRYRR--YRERSYSRSPYGSRSYS 196
P Y+ SRS +YSP P R R RS YRR YR Y RSPY SRSYS
Sbjct: 131 GPSYSGSRSRSHYGGSHYSPSPCRSRYCRSP---YRRSHYRGSRYGRSPY-SRSYS 182
>gi|209155586|gb|ACI34025.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
gi|209732124|gb|ACI66931.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
Length = 211
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDNRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|195435065|ref|XP_002065522.1| GK14626 [Drosophila willistoni]
gi|194161607|gb|EDW76508.1| GK14626 [Drosophila willistoni]
Length = 203
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 22 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 81
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 82 ALEAMDGRMLDGRELRVQMA 101
>gi|300176090|emb|CBK23401.2| unnamed protein product [Blastocystis hominis]
Length = 259
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL+VR R +++ F ++G + D+++PRDYYT + RGF F+++ + A DA
Sbjct: 102 CSLIVRGFRDVVDRSEIQNIFSKYGNVHDVHIPRDYYTHKQRGFAFIEFENREQAEDAIS 161
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEM 124
H+DG + G ++V A+ NRK +EM
Sbjct: 162 HLDGRSVCGSTVSVSIAKNNRKTSAEM 188
>gi|83286039|ref|XP_729987.1| dentin phosphoryn [Plasmodium yoelii yoelii 17XNL]
gi|23489341|gb|EAA21552.1| dentin phosphoryn [Plasmodium yoelii yoelii]
Length = 793
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLL+RNL + P+ +R F FG+++D+YLP D+YT PRGFGFV+Y DP A +A
Sbjct: 7 SLLIRNLSFETSPDKVRKIFEHFGKIRDVYLPLDHYTRRPRGFGFVEYYDPKHAKEALNI 66
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
++ + G+E+ ++ A+ RK P M+
Sbjct: 67 LNNSKIDGKEIRIIVAQNRRKSPDTMK 93
>gi|45361503|ref|NP_989328.1| serine/arginine-rich splicing factor 2 [Xenopus (Silurana)
tropicalis]
gi|39794351|gb|AAH64167.1| splicing factor, arginine/serine-rich 2 [Xenopus (Silurana)
tropicalis]
gi|89272888|emb|CAJ82901.1| splicing factor, arginine/serine-rich 2 [Xenopus (Silurana)
tropicalis]
Length = 220
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|77627748|ref|NP_001029290.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|60414777|sp|Q5R1W5.3|SRSF2_PANTR RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|56342346|dbj|BAD74033.1| arginine/serine-rich 2 splicing factor [Pan troglodytes verus]
Length = 221
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|62898065|dbj|BAD96972.1| splicing factor, arginine/serine-rich 2 variant [Homo sapiens]
Length = 221
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|148230060|ref|NP_001080743.1| serine/arginine-rich splicing factor 2 [Xenopus laevis]
gi|28175397|gb|AAH45229.1| Sfrs2-prov protein [Xenopus laevis]
Length = 215
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|195351055|ref|XP_002042052.1| GM26218 [Drosophila sechellia]
gi|195578745|ref|XP_002079224.1| GD22120 [Drosophila simulans]
gi|194123876|gb|EDW45919.1| GM26218 [Drosophila sechellia]
gi|194191233|gb|EDX04809.1| GD22120 [Drosophila simulans]
Length = 195
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 20 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 79
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 80 ALEAMDGRMLDGRELRVQMA 99
>gi|427786359|gb|JAA58631.1| Putative splicing factor sr protein superfamily [Rhipicephalus
pulchellus]
Length = 383
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D TSL V NL + PEDL+ F ++G + D+Y+PR YT E RGF FV++ D D D
Sbjct: 11 DGMTSLKVDNLTYRTTPEDLKRVFERYGDVGDVYIPRHPYTRESRGFAFVRFYDKRDCED 70
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A +DGY++ GREL V A
Sbjct: 71 AMDALDGYMMDGRELRVQMA 90
>gi|195035777|ref|XP_001989348.1| GH11678 [Drosophila grimshawi]
gi|193905348|gb|EDW04215.1| GH11678 [Drosophila grimshawi]
Length = 203
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 20 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 79
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 80 ALEAMDGRMLDGRELRVQMA 99
>gi|26345390|dbj|BAC36346.1| unnamed protein product [Mus musculus]
Length = 254
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|21358099|ref|NP_652612.1| SC35, isoform B [Drosophila melanogaster]
gi|320545008|ref|NP_001188794.1| SC35, isoform C [Drosophila melanogaster]
gi|386769542|ref|NP_001246005.1| SC35, isoform D [Drosophila melanogaster]
gi|7243688|gb|AAF43415.1|AF232775_1 SR family splicing factor SC35 [Drosophila melanogaster]
gi|7297948|gb|AAF53192.1| SC35, isoform B [Drosophila melanogaster]
gi|17862504|gb|AAL39729.1| LD32469p [Drosophila melanogaster]
gi|220944588|gb|ACL84837.1| SC35-PA [synthetic construct]
gi|220954528|gb|ACL89807.1| SC35-PA [synthetic construct]
gi|318068433|gb|ADV37044.1| SC35, isoform C [Drosophila melanogaster]
gi|383291463|gb|AFH03679.1| SC35, isoform D [Drosophila melanogaster]
Length = 195
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 20 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 79
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 80 ALEAMDGRMLDGRELRVQMA 99
>gi|145346140|ref|XP_001417551.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577778|gb|ABO95844.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 92
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
S+LVRN+ D +D+R F +G + D+Y+P+D TG RG FV+Y +A DA
Sbjct: 1 VSVLVRNISFDAHEDDIRDKFQAYGNVLDVYMPKDRETGRKRGLAFVKYAIQGEADDAVE 60
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
G ++GRE+ A E RK P EMR R
Sbjct: 61 KATGMDIMGREVRCEIANERRKNPDEMRGR 90
>gi|195401200|ref|XP_002059202.1| GJ16161 [Drosophila virilis]
gi|194156076|gb|EDW71260.1| GJ16161 [Drosophila virilis]
Length = 202
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 21 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 80
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 81 ALEAMDGRMLDGRELRVQMA 100
>gi|402593936|gb|EJW87863.1| hypothetical protein WUBG_01225 [Wuchereria bancrofti]
Length = 103
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 26 RGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQ 85
RG Y R ++PT L VR + + RP+DLR F Q G ++D+Y+P DYYT E RGF +V+
Sbjct: 5 RGSY--RDDEIPT-LYVRQVHYSARPDDLRALFEQMGPVRDVYIPLDYYTRESRGFAYVK 61
Query: 86 YIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 122
+ DA DA ++G +LGR + V +AE RK +
Sbjct: 62 FEFTRDAEDALRELNGTSILGRRIEVEWAEGQRKSTA 98
>gi|405967042|gb|EKC32256.1| Splicing factor, arginine/serine-rich 2 [Crassostrea gigas]
Length = 183
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PEDLR F ++G + D+Y+PRD +T E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTTPEDLRRAFDKYGDVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG ++ GREL V A
Sbjct: 74 SMDGAIMDGRELRVQMA 90
>gi|308803152|ref|XP_003078889.1| putative small nuclear ribonucleoprotein (ISS) [Ostreococcus tauri]
gi|116057342|emb|CAL51769.1| putative small nuclear ribonucleoprotein (ISS) [Ostreococcus tauri]
Length = 269
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 34 RDLP-TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
RDLP S+LVRNL D R +D+R F +G + D+Y+P+D TG PRG FV+Y A
Sbjct: 39 RDLPGVSVLVRNLSWDAREDDVRDRFAGYGNILDVYMPKDRETGRPRGLAFVKY---ATQ 95
Query: 93 ADAKYHMDGYL--LLGRELTVVFAEENRKKPSEMRA 126
++A +DG + LGRE+ A + RK EMR+
Sbjct: 96 SEADAAVDGGVGDFLGREIRCEIATQQRKSRDEMRS 131
>gi|427797867|gb|JAA64385.1| Putative splicing factor sr protein superfamily, partial
[Rhipicephalus pulchellus]
Length = 300
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D TSL V NL + PEDL+ F ++G + D+Y+PR YT E RGF FV++ D D D
Sbjct: 11 DGMTSLKVDNLTYRTTPEDLKRVFERYGDVGDVYIPRHPYTRESRGFAFVRFYDKRDCED 70
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A +DGY++ GREL V A
Sbjct: 71 AMDALDGYMMDGRELRVQMA 90
>gi|194761376|ref|XP_001962905.1| GF15672 [Drosophila ananassae]
gi|190616602|gb|EDV32126.1| GF15672 [Drosophila ananassae]
Length = 199
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 17 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 76
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 77 ALEAMDGRMLDGRELRVQMA 96
>gi|355718912|gb|AES06428.1| splicing factor, arginine/serine-rich 2 [Mustela putorius furo]
Length = 108
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|327264866|ref|XP_003217232.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Anolis
carolinensis]
Length = 221
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|194861231|ref|XP_001969737.1| GG10262 [Drosophila erecta]
gi|190661604|gb|EDV58796.1| GG10262 [Drosophila erecta]
Length = 195
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 20 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 79
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 80 ALEAMDGRMLDGRELRVQMA 99
>gi|299115545|emb|CBN75749.1| serine/arginine rich splicing factor, putative [Ectocarpus
siliculosus]
Length = 308
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V N+ C PE+LR F G+L D+Y+PRD TGEPRGF FV+Y+D DA A
Sbjct: 2 VTLKVDNIAFTCSPEELREVFEGCGKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADYAVD 61
Query: 98 HMDGYLLLGRELTVVFAEENR 118
+DG GREL + +A + R
Sbjct: 62 RLDGTRFNGRELRIQYARKRR 82
>gi|226423972|gb|ACO53091.1| MIP01221p [Drosophila melanogaster]
Length = 195
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + P+DLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 20 DGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 79
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 80 ALEAMDGRMLDGRELRVQMA 99
>gi|426346594|ref|XP_004040961.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 219
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|397494985|ref|XP_003818346.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 3 [Pan
paniscus]
gi|119609854|gb|EAW89448.1| splicing factor, arginine/serine-rich 2, isoform CRA_g [Homo
sapiens]
gi|194387574|dbj|BAG60151.1| unnamed protein product [Homo sapiens]
Length = 209
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|116175283|ref|NP_001070697.1| serine/arginine-rich splicing factor 2 [Sus scrofa]
gi|122131841|sp|Q06A98.1|SRSF2_PIG RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|115371755|gb|ABI96202.1| SFRS2 [Sus scrofa]
Length = 221
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|195114806|ref|XP_002001958.1| GI17122 [Drosophila mojavensis]
gi|193912533|gb|EDW11400.1| GI17122 [Drosophila mojavensis]
Length = 203
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 21 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 80
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 81 ALEAMDGRMLDGRELRVQMA 100
>gi|148702654|gb|EDL34601.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_a [Mus
musculus]
Length = 241
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|119609849|gb|EAW89443.1| splicing factor, arginine/serine-rich 2, isoform CRA_d [Homo
sapiens]
gi|193783682|dbj|BAG53593.1| unnamed protein product [Homo sapiens]
Length = 209
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 2 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 61
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 62 AMDGAVLDGRELRVQMA 78
>gi|359320233|ref|XP_003639286.1| PREDICTED: serine/arginine-rich splicing factor 2-like isoform 1
[Canis lupus familiaris]
gi|359320235|ref|XP_003639287.1| PREDICTED: serine/arginine-rich splicing factor 2-like isoform 2
[Canis lupus familiaris]
Length = 221
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|297701877|ref|XP_002827924.1| PREDICTED: uncharacterized protein LOC100439801 isoform 2 [Pongo
abelii]
Length = 287
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 80 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 139
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 140 AMDGAVLDGRELRVQMA 156
>gi|195472373|ref|XP_002088475.1| GE12283 [Drosophila yakuba]
gi|194174576|gb|EDW88187.1| GE12283 [Drosophila yakuba]
Length = 217
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 47/75 (62%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA DA M
Sbjct: 48 CVVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAM 107
Query: 100 DGYLLLGRELTVVFA 114
DG +L GREL V A
Sbjct: 108 DGRMLDGRELRVQMA 122
>gi|297741200|emb|CBI32151.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 73/98 (74%), Gaps = 7/98 (7%)
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFS-----RSYDGRRSPPRYSRSPHYARGY 153
MDG +LLGRELTVVFAEENRK+P +MRARER S R D RRSPPRYSRSP YAR
Sbjct: 1 MDGQVLLGRELTVVFAEENRKRPVDMRARERTSVVGRGRPSDRRRSPPRYSRSPRYARSR 60
Query: 154 SRSPDYYSPPPRRGRDSRSISPR-YRRYR-ERSYSRSP 189
SRSP++Y P PRR SRS+SP+ RRY E+ YS SP
Sbjct: 61 SRSPNHYPPSPRRRHYSRSVSPQDKRRYSGEQPYSASP 98
>gi|426346598|ref|XP_004040963.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 206
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|9837439|gb|AAG00575.1|AF288041_1 splicing factor arginine/serine rich 2 [Oryzias latipes]
Length = 211
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 49/76 (64%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL V NL + PE LR F ++GR+ D+Y+PRD Y+ E RGF FV++ D DA DA
Sbjct: 1 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYSKESRGFAFVRFFDKRDAEDAMDA 60
Query: 99 MDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 61 MDGALLDGRELRVQMA 76
>gi|332260181|ref|XP_003279164.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 2 [Nomascus leucogenys]
Length = 221
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|6755478|ref|NP_035488.1| serine/arginine-rich splicing factor 2 [Mus musculus]
gi|47271443|ref|NP_003007.2| serine/arginine-rich splicing factor 2 [Homo sapiens]
gi|57528425|ref|NP_001009720.1| serine/arginine-rich splicing factor 2 [Rattus norvegicus]
gi|77735589|ref|NP_001029490.1| serine/arginine-rich splicing factor 2 [Bos taurus]
gi|299758481|ref|NP_001177668.1| splicing factor, arginine/serine-rich 2 [Macaca mulatta]
gi|306482646|ref|NP_001182356.1| serine/arginine-rich splicing factor 2 [Homo sapiens]
gi|126308709|ref|XP_001371367.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Monodelphis
domestica]
gi|296203283|ref|XP_002748811.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 1
[Callithrix jacchus]
gi|395825870|ref|XP_003786143.1| PREDICTED: serine/arginine-rich splicing factor 2 [Otolemur
garnettii]
gi|397494981|ref|XP_003818344.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 1 [Pan
paniscus]
gi|397494983|ref|XP_003818345.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 2 [Pan
paniscus]
gi|402901195|ref|XP_003913541.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 1 [Papio
anubis]
gi|402901197|ref|XP_003913542.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 2 [Papio
anubis]
gi|402901199|ref|XP_003913543.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 3 [Papio
anubis]
gi|402901201|ref|XP_003913544.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 4 [Papio
anubis]
gi|18280933|sp|Q62093.4|SRSF2_MOUSE RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Protein PR264; AltName: Full=Putative myelin
regulatory factor 1; Short=MRF-1; AltName: Full=Splicing
component, 35 kDa; AltName: Full=Splicing factor SC35;
Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|52783335|sp|Q6PDU1.3|SRSF2_RAT RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|60416437|sp|Q01130.4|SRSF2_HUMAN RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Protein PR264; AltName: Full=Splicing component, 35
kDa; AltName: Full=Splicing factor SC35; Short=SC-35;
AltName: Full=Splicing factor, arginine/serine-rich 2
gi|110287957|sp|Q3MHR5.3|SRSF2_BOVIN RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|539663|pir||A42701 splicing factor SFRS2 - human
gi|35597|emb|CAA44307.1| PR 264 [Homo sapiens]
gi|455419|emb|CAA53383.1| PR264/SC35 [Homo sapiens]
gi|3335676|gb|AAC71000.1| splicing factor SC35 [Mus musculus]
gi|12653143|gb|AAH00339.1| SFRS2 protein [Homo sapiens]
gi|12654915|gb|AAH01303.1| SFRS2 protein [Homo sapiens]
gi|13529557|gb|AAH05493.1| Sfrs2 protein [Mus musculus]
gi|26351947|dbj|BAC39610.1| unnamed protein product [Mus musculus]
gi|26352962|dbj|BAC40111.1| unnamed protein product [Mus musculus]
gi|30583339|gb|AAP35914.1| splicing factor, arginine/serine-rich 2 [Homo sapiens]
gi|34849641|gb|AAH58508.1| Splicing factor, arginine/serine-rich 2 [Rattus norvegicus]
gi|47123339|gb|AAH70086.1| Splicing factor, arginine/serine-rich 2 [Homo sapiens]
gi|61359244|gb|AAX41688.1| splicing factor arginine/serine-rich 2 [synthetic construct]
gi|67969334|dbj|BAE01019.1| unnamed protein product [Macaca fascicularis]
gi|74227066|dbj|BAE38330.1| unnamed protein product [Mus musculus]
gi|75775273|gb|AAI05139.1| Splicing factor, arginine/serine-rich 2 [Bos taurus]
gi|90076288|dbj|BAE87824.1| unnamed protein product [Macaca fascicularis]
gi|119609845|gb|EAW89439.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|119609846|gb|EAW89440.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|119609851|gb|EAW89445.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|119609853|gb|EAW89447.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|123980614|gb|ABM82136.1| splicing factor, arginine/serine-rich 2 [synthetic construct]
gi|123995435|gb|ABM85319.1| splicing factor, arginine/serine-rich 2 [synthetic construct]
gi|148702655|gb|EDL34602.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_b [Mus
musculus]
gi|148702656|gb|EDL34603.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_b [Mus
musculus]
gi|149054884|gb|EDM06701.1| similar to splicing factor, arginine/serine-rich 2, isoform CRA_a
[Rattus norvegicus]
gi|149054885|gb|EDM06702.1| similar to splicing factor, arginine/serine-rich 2, isoform CRA_a
[Rattus norvegicus]
gi|149054887|gb|EDM06704.1| similar to splicing factor, arginine/serine-rich 2, isoform CRA_a
[Rattus norvegicus]
gi|168277776|dbj|BAG10866.1| splicing factor, arginine/serine-rich 2 [synthetic construct]
gi|193784944|dbj|BAG54097.1| unnamed protein product [Homo sapiens]
gi|296476083|tpg|DAA18198.1| TPA: splicing factor, arginine/serine-rich 2 [Bos taurus]
gi|380782971|gb|AFE63361.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|380815556|gb|AFE79652.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|384941848|gb|AFI34529.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|384948766|gb|AFI37988.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|410226692|gb|JAA10565.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410226694|gb|JAA10566.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410262826|gb|JAA19379.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410262828|gb|JAA19380.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410299756|gb|JAA28478.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410299760|gb|JAA28480.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410299766|gb|JAA28483.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410338225|gb|JAA38059.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410338227|gb|JAA38060.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410338229|gb|JAA38061.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410338231|gb|JAA38062.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410338233|gb|JAA38063.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|228504|prf||1805195B RNA-binding protein PR264
Length = 221
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|358009411|pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
gi|358009412|pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
gi|358009414|pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 48 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 107
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 108 AMDGAVLDGRELRVQMA 124
>gi|322789593|gb|EFZ14819.1| hypothetical protein SINV_10987 [Solenopsis invicta]
gi|332021256|gb|EGI61641.1| Splicing factor, arginine/serine-rich 2 [Acromyrmex echinatior]
Length = 175
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD +T E RGF FV++ D DA DA
Sbjct: 14 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGRLLDGRELRVQMA 90
>gi|307197633|gb|EFN78812.1| Splicing factor, arginine/serine-rich 2 [Harpegnathos saltator]
Length = 175
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD +T E RGF FV++ D DA DA
Sbjct: 14 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGRLLDGRELRVQMA 90
>gi|313229099|emb|CBY18251.1| unnamed protein product [Oikopleura dioica]
Length = 385
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 20/126 (15%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VR + + + ++R F FG L+D+YLP+DYYT E +G +V+Y + DA +A+ M
Sbjct: 126 LFVRPIDNGTKVSEVRDYFQVFGELRDVYLPKDYYTKEMKGVAYVEYKEQEDAEEAQAAM 185
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRA-------------------RERFSRSYDGRR-S 139
DG G+ ++V FA+ +RK M ++R SR+ G R S
Sbjct: 186 DGCEFNGKNISVTFAQGDRKSKDTMATGVYATNMEIEMLKKELALEQKRLSRAAQGERIS 245
Query: 140 PPRYSR 145
PPR++
Sbjct: 246 PPRFAE 251
>gi|357462659|ref|XP_003601611.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355490659|gb|AES71862.1| Arginine/serine-rich splicing factor [Medicago truncatula]
Length = 147
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 64/111 (57%), Gaps = 24/111 (21%)
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRS------------PPRYSRS 146
MDG +LLGRE+TVVFAEENRKKP+EMR RER S GR S P
Sbjct: 1 MDGQVLLGREITVVFAEENRKKPTEMRVRERSS----GRHSDRRRSPPRYSRSPRYSRSP 56
Query: 147 PHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRY--------RERSYSRSP 189
P + S DY+SPPP+R SRS+SP RR+ RERSYSRSP
Sbjct: 57 PRHRSRSRGSRDYHSPPPKRREYSRSVSPEDRRHSREGSQHSRERSYSRSP 107
>gi|149478364|ref|XP_001514814.1| PREDICTED: serine/arginine-rich splicing factor 2-like, partial
[Ornithorhynchus anatinus]
Length = 120
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|1405747|emb|CAA67134.1| PR264/SC35 [Mus musculus]
Length = 121
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|303324701|pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 71 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 130
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 131 AMDGAVLDGRELRVQMA 147
>gi|110762781|ref|XP_393352.2| PREDICTED: serine/arginine-rich splicing factor 2-like [Apis
mellifera]
gi|340724784|ref|XP_003400761.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Bombus
terrestris]
gi|350398198|ref|XP_003485116.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Bombus
impatiens]
gi|380022396|ref|XP_003695032.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Apis
florea]
gi|383865619|ref|XP_003708270.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Megachile
rotundata]
Length = 176
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD +T E RGF FV++ D DA DA
Sbjct: 14 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGRLLDGRELRVQMA 90
>gi|426346592|ref|XP_004040960.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 241
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|403280479|ref|XP_003931745.1| PREDICTED: uncharacterized protein LOC101052045 [Saimiri
boliviensis boliviensis]
Length = 209
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|355568958|gb|EHH25239.1| hypothetical protein EGK_09022 [Macaca mulatta]
Length = 222
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|426346596|ref|XP_004040962.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 221
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|260826177|ref|XP_002608042.1| hypothetical protein BRAFLDRAFT_213668 [Branchiostoma floridae]
gi|229293392|gb|EEN64052.1| hypothetical protein BRAFLDRAFT_213668 [Branchiostoma floridae]
Length = 111
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 6/88 (6%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY------IDPAD 91
TSL VRN+ RP++LR FG++G + D+Y+P D++T PRGF +VQY D D
Sbjct: 10 TSLYVRNVPDGTRPDELRSLFGKYGPIVDVYIPLDHFTRHPRGFAYVQYPFLLTFEDVRD 69
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRK 119
A DA Y +D GREL + FAE +RK
Sbjct: 70 AEDAMYGLDRSRFYGRELEIQFAEGDRK 97
>gi|90076648|dbj|BAE88004.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|313225812|emb|CBY07286.1| unnamed protein product [Oikopleura dioica]
Length = 208
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL VR + + RP++L+ F +FG +KD+++P D+ T PRGF ++++ DA +
Sbjct: 5 SLFVRPIAQNVRPDELKAEFNKFGAVKDVHIPLDFRTRAPRGFAYIEFETMEDARNG-LG 63
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
MDG L GR++ V FAE +RK P M++
Sbjct: 64 MDGMNLNGRKVNVAFAEGDRKTPGAMKS 91
>gi|313219579|emb|CBY30501.1| unnamed protein product [Oikopleura dioica]
Length = 208
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL VR + + RP++L+ F +FG +KD+++P D+ T PRGF ++++ DA +
Sbjct: 5 SLFVRPIAQNVRPDELKAEFNKFGAVKDVHIPLDFRTRAPRGFAYIEFETMEDARNG-LG 63
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
MDG L GR++ V FAE +RK P M++
Sbjct: 64 MDGMNLNGRKVNVAFAEGDRKTPGAMKS 91
>gi|240849499|ref|NP_001155685.1| serine/arginine rich splicing factor-like [Acyrthosiphon pisum]
gi|239790824|dbj|BAH71947.1| ACYPI006902 [Acyrthosiphon pisum]
Length = 153
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD +T E RGF FV++ D DA DA
Sbjct: 14 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGRMLDGRELRVQMA 90
>gi|21751099|dbj|BAC03903.1| unnamed protein product [Homo sapiens]
Length = 201
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|427794699|gb|JAA62801.1| Putative splicing factor sr protein superfamily, partial
[Rhipicephalus pulchellus]
Length = 368
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V NL + PEDL+ F ++G + D+Y+PR YT E RGF FV++ D D DA +
Sbjct: 1 LKVDNLTYRTTPEDLKRVFERYGDVGDVYIPRHPYTRESRGFAFVRFYDKRDCEDAMDAL 60
Query: 100 DGYLLLGRELTVVFA 114
DGY++ GREL V A
Sbjct: 61 DGYMMDGRELRVQMA 75
>gi|51094549|gb|EAL23803.1| similar to Splicing factor, arginine/serine-rich, 46kD [Homo
sapiens]
Length = 293
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+P + +T PRGF FV++ D +DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR 137
A+ MDG +L REL V A R+ E RS+ GR
Sbjct: 71 AEAAMDGAVLDERELRVRMARYGRRDLPRSSQEEPRGRSWGGR 113
>gi|413955619|gb|AFW88268.1| hypothetical protein ZEAMMB73_484317 [Zea mays]
Length = 117
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 68/113 (60%), Gaps = 14/113 (12%)
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFS---RSYDGRRSPPRYSRSPHY----AR 151
MDG +LLGRE+ VVFAEENRKKPS+MRARE+ S RSYDGR SRSP
Sbjct: 1 MDGKMLLGREIAVVFAEENRKKPSDMRAREKISGRGRSYDGR----LRSRSPGLNGSPRG 56
Query: 152 GYSRSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRSPYGSRSYSPSRSRSRS 204
YSP P+R SRS +P R RERS SRSP +RS S S SRS
Sbjct: 57 RSRSQSRSYSPAPKRKHYSRSPAP---RPRERSLSRSPAVNRSRSASPIVSRS 106
>gi|294933968|ref|XP_002780925.1| FUS-interacting serine-arginine-rich protein, putative [Perkinsus
marinus ATCC 50983]
gi|239891072|gb|EER12720.1| FUS-interacting serine-arginine-rich protein, putative [Perkinsus
marinus ATCC 50983]
Length = 137
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%)
Query: 54 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
LR F ++G ++D+Y+P DYY+ PRGFGFV++ DP DA +AK MDG + G + V
Sbjct: 3 LREAFEKYGEIRDVYIPLDYYSRRPRGFGFVEFSDPRDADEAKAAMDGKRIGGNAIEVEI 62
Query: 114 AEENRKKPSEMR 125
A+E RK P MR
Sbjct: 63 AKERRKSPKTMR 74
>gi|428172429|gb|EKX41338.1| hypothetical protein GUITHDRAFT_142043 [Guillardia theta CCMP2712]
Length = 137
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%)
Query: 46 RHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105
R E+++ F +FG+++D+Y+P DY+T P+ F F+++++ DA DAK +D +
Sbjct: 14 RDGISAEEVKSVFERFGKVRDVYIPTDYHTKRPKPFAFIEFLNGDDARDAKDELDNREIC 73
Query: 106 GRELTVVFAEENRKKPSEMRARE 128
GR+++V++A+ R P +MRAR+
Sbjct: 74 GRKVSVLYAQRGRTTPDQMRARD 96
>gi|380809044|gb|AFE76397.1| serine/arginine-rich splicing factor 8 [Macaca mulatta]
gi|384944954|gb|AFI36082.1| serine/arginine-rich splicing factor 8 [Macaca mulatta]
Length = 287
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 55/94 (58%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A+ MDG L GREL V A R+ R RE
Sbjct: 71 AEAAMDGAELDGRELRVQVARYGRRDLPRSRQRE 104
>gi|388490247|ref|NP_001253264.1| serine/arginine-rich splicing factor 8 [Macaca mulatta]
gi|402894987|ref|XP_003910620.1| PREDICTED: serine/arginine-rich splicing factor 8 [Papio anubis]
gi|387542734|gb|AFJ71994.1| serine/arginine-rich splicing factor 8 [Macaca mulatta]
Length = 287
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 55/94 (58%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A+ MDG L GREL V A R+ R RE
Sbjct: 71 AEAAMDGAELDGRELRVQVARYGRRDLPRSRQRE 104
>gi|115843186|ref|XP_001198082.1| PREDICTED: serine/arginine-rich splicing factor 2-like
[Strongylocentrotus purpuratus]
Length = 141
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PEDLR F ++G + DIY+PRD ++ E RGF FV+Y D DA DA
Sbjct: 14 TSLKVDNLTYSTTPEDLRRCFEKYGEVGDIYIPRDKFSRESRGFAFVRYPDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG L GR+L V A
Sbjct: 74 SMDGNLYDGRKLRVQMA 90
>gi|340372565|ref|XP_003384814.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Amphimedon
queenslandica]
Length = 169
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL P++++ F ++G + DIY+PRD YT E RGF FV++ + DA DA
Sbjct: 2 VSLKVDNLSFRMTPDEIKPIFEKYGEVGDIYIPRDPYTKESRGFAFVRFYEKRDAEDAME 61
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+DGY++ GRE+ V A R P+E + R
Sbjct: 62 RLDGYVIDGREMRVQLARYGR--PNENKGR 89
>gi|115843189|ref|XP_001198099.1| PREDICTED: serine/arginine-rich splicing factor 2-like
[Strongylocentrotus purpuratus]
Length = 141
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PEDLR F ++G + DIY+PRD ++ E RGF FV+Y D DA DA
Sbjct: 14 TSLKVDNLTYSTTPEDLRRCFEKYGEVGDIYIPRDKFSRESRGFAFVRYPDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG L GR+L V A
Sbjct: 74 SMDGNLYDGRKLRVQMA 90
>gi|193784791|dbj|BAG53944.1| unnamed protein product [Homo sapiens]
Length = 195
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L REL V A
Sbjct: 74 AMDGAVLDARELRVQMA 90
>gi|289741385|gb|ADD19440.1| putative splicing factor [Glossina morsitans morsitans]
Length = 191
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 48/80 (60%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA D
Sbjct: 14 DGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAED 73
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG L GREL V A
Sbjct: 74 ALEAMDGRKLDGRELRVQMA 93
>gi|146197835|dbj|BAF57630.1| TLS-associated protein [Dugesia japonica]
Length = 201
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 56/96 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T++ V N+ D R ++L+ FG++G + LP DYY+G P+GF FVQ+ D DA ++
Sbjct: 6 TTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFD 65
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRS 133
+ GY + R L + FA +K P EMR R RS
Sbjct: 66 RLQGYRIGKRSLRLEFATGTKKTPDEMRTVTRRGRS 101
>gi|221488339|gb|EEE26553.1| serine/arginine rich splicing factor, putative [Toxoplasma gondii
GT1]
gi|221508841|gb|EEE34410.1| RRM domain-containing protein [Toxoplasma gondii VEG]
Length = 170
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
+++R F +FG ++D+YLP DY+TGEPRGFGFV++ DA DA + + LL G + V
Sbjct: 6 QEVRAAFEEFGPIRDVYLPLDYHTGEPRGFGFVEFESSKDAYDAMHQLHNTLLNGSTIHV 65
Query: 112 VFAEENRKKPSEM 124
A++ R P +M
Sbjct: 66 TIAKKGRSDPMQM 78
>gi|431908736|gb|ELK12328.1| Splicing factor, arginine/serine-rich 2 [Pteropus alecto]
Length = 178
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGREL 109
MDG +L GREL
Sbjct: 74 AMDGAVLDGREL 85
>gi|237833159|ref|XP_002365877.1| hypothetical protein TGME49_072440 [Toxoplasma gondii ME49]
gi|211963541|gb|EEA98736.1| hypothetical protein TGME49_072440 [Toxoplasma gondii ME49]
Length = 170
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
+++R F +FG ++D+YLP DY+TGEPRGFGFV++ DA DA + + LL G + V
Sbjct: 6 QEVRAAFEEFGPIRDVYLPLDYHTGEPRGFGFVEFESSKDAYDAMHQLHNTLLNGSTIHV 65
Query: 112 VFAEENRKKPSEM 124
A++ R P +M
Sbjct: 66 TIAKKGRSDPMQM 78
>gi|241020201|ref|XP_002405861.1| IFN-response element binding factor, putative [Ixodes scapularis]
gi|215491811|gb|EEC01452.1| IFN-response element binding factor, putative [Ixodes scapularis]
Length = 194
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D TSL V NL + PEDL+ F ++G + D+Y+PR YT + RGF FV++ D D D
Sbjct: 11 DGMTSLKVDNLTYRTTPEDLKRVFEKYGDVGDVYIPRHPYTRDSRGFAFVRFYDKRDGED 70
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A +DGY+L GREL V A
Sbjct: 71 AMDALDGYILDGRELRVQMA 90
>gi|426370158|ref|XP_004052038.1| PREDICTED: serine/arginine-rich splicing factor 8 [Gorilla gorilla
gorilla]
Length = 282
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL + P+ LR F ++GR+ D+Y+PR+ +T P GF FV++ D +DA DA+
Sbjct: 14 ITLKVDNLTYRTSPDSLRPVFEKYGRVGDVYIPREPHTKAPWGFAFVRFHDRSDAQDAEA 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|440895154|gb|ELR47416.1| Serine/arginine-rich splicing factor 2, partial [Bos grunniens
mutus]
Length = 86
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGREL 109
MDG +L GREL
Sbjct: 74 AMDGAVLDGREL 85
>gi|332373880|gb|AEE62081.1| unknown [Dendroctonus ponderosae]
Length = 168
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + P+DLR F + G + DIY+PRD +T E RGF FV++ D DA DA
Sbjct: 14 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGRMLDGRELRVQMA 90
>gi|172046472|emb|CAQ34908.1| SR family splicing factor SC35 [Chironomus tentans]
Length = 167
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD +T E RGF FV++ + DA +A
Sbjct: 15 ISLKVDNLTYRTTPEDLRRVFERCGSVGDIYIPRDRHTRESRGFAFVRFYEKRDAEEALQ 74
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 75 EMDGRVLDGRELRVQMA 91
>gi|312373610|gb|EFR21320.1| hypothetical protein AND_17210 [Anopheles darlingi]
Length = 170
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + P+DLR F + G + DIY+PRD +T E RGF FV++ D DA D
Sbjct: 12 DGMISLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAED 71
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 72 ALDAMDGRMLDGRELRVQMA 91
>gi|14141216|gb|AAK54351.1| SRp46 splicing factor [Homo sapiens]
Length = 272
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA D
Sbjct: 1 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 60
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A+ MDG L GREL V A
Sbjct: 61 AEAAMDGAELDGRELRVQVA 80
>gi|395533366|ref|XP_003768731.1| PREDICTED: serine/arginine-rich splicing factor 2 [Sarcophilus
harrisii]
Length = 224
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 38 TSLLVRNLRHDCRPEDLRGPF---GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
TSL V NL + P+ LR F G++GR+ D+Y+PRD YT E RGF FV++ D DA D
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKDGRYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 73
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 74 AMDAMDGAVLDGRELRVQMA 93
>gi|170041667|ref|XP_001848576.1| serine/arginine rich splicing factor [Culex quinquefasciatus]
gi|167865236|gb|EDS28619.1| serine/arginine rich splicing factor [Culex quinquefasciatus]
Length = 186
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + P+DLR F + G + DIY+PRD +T E RGF FV++ D DA DA
Sbjct: 15 VSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAQDALD 74
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 75 AMDGRMLDGRELRVQMA 91
>gi|337926|gb|AAA60306.1| splicing factor [Homo sapiens]
Length = 221
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++ R+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYRRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|15055543|ref|NP_115285.1| serine/arginine-rich splicing factor 8 [Homo sapiens]
gi|74761217|sp|Q9BRL6.1|SRSF8_HUMAN RecName: Full=Serine/arginine-rich splicing factor 8; AltName:
Full=Pre-mRNA-splicing factor SRP46; Short=Splicing
factor SRp46; AltName: Full=Splicing factor,
arginine/serine-rich 2B
gi|14141201|gb|AAK54350.1| SRp46 splicing factor [Homo sapiens]
gi|119587358|gb|EAW66954.1| Splicing factor, arginine/serine-rich, 46kD, isoform CRA_a [Homo
sapiens]
gi|119587359|gb|EAW66955.1| Splicing factor, arginine/serine-rich, 46kD, isoform CRA_a [Homo
sapiens]
gi|119587360|gb|EAW66956.1| Splicing factor, arginine/serine-rich, 46kD, isoform CRA_a [Homo
sapiens]
gi|189069077|dbj|BAG35415.1| unnamed protein product [Homo sapiens]
gi|193785751|dbj|BAG51186.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA DA+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG L GREL V A
Sbjct: 74 AMDGAELDGRELRVQVA 90
>gi|332837526|ref|XP_001139465.2| PREDICTED: serine/arginine-rich splicing factor 8 isoform 1 [Pan
troglodytes]
gi|410045734|ref|XP_003952050.1| PREDICTED: serine/arginine-rich splicing factor 8 isoform 2 [Pan
troglodytes]
gi|410226370|gb|JAA10404.1| serine/arginine-rich splicing factor 8 [Pan troglodytes]
gi|410255620|gb|JAA15777.1| serine/arginine-rich splicing factor 8 [Pan troglodytes]
gi|410295516|gb|JAA26358.1| serine/arginine-rich splicing factor 8 [Pan troglodytes]
gi|410348530|gb|JAA40869.1| serine/arginine-rich splicing factor 8 [Pan troglodytes]
gi|410348532|gb|JAA40870.1| serine/arginine-rich splicing factor 8 [Pan troglodytes]
gi|410348534|gb|JAA40871.1| serine/arginine-rich splicing factor 8 [Pan troglodytes]
Length = 282
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA DA+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG L GREL V A
Sbjct: 74 AMDGAELDGRELRVQVA 90
>gi|34784708|gb|AAH57783.1| SFRS2B protein [Homo sapiens]
Length = 275
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA DA+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG L GREL V A
Sbjct: 74 AMDGAELDGRELRVQVA 90
>gi|296216761|ref|XP_002754708.1| PREDICTED: serine/arginine-rich splicing factor 8-like [Callithrix
jacchus]
Length = 295
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA DA+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDQRDAEDAEA 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG L GREL V A
Sbjct: 74 AMDGAELDGRELRVQVA 90
>gi|51094548|gb|EAL23802.1| similar to Splicing factor, arginine/serine-rich, 46kD [Homo
sapiens]
Length = 549
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+P + +T PRGF FV++ D +DA D
Sbjct: 267 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQD 326
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR 137
A+ MDG +L REL V A R+ E RS+ GR
Sbjct: 327 AEAAMDGAVLDERELRVRMARYGRRDLPRSSQEEPRGRSWGGR 369
>gi|307219198|ref|NP_001182520.1| splicing factor, arginine/serine-rich 2B [Pongo abelii]
Length = 282
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A+ MDG L GREL V A
Sbjct: 71 AEAAMDGAELDGRELRVQVA 90
>gi|157125941|ref|XP_001654458.1| serine/arginine rich splicing factor [Aedes aegypti]
gi|157125943|ref|XP_001654459.1| serine/arginine rich splicing factor [Aedes aegypti]
gi|94469018|gb|ABF18358.1| predicted splicing factor [Aedes aegypti]
gi|108873468|gb|EAT37693.1| AAEL010340-PA [Aedes aegypti]
gi|108873469|gb|EAT37694.1| AAEL010340-PB [Aedes aegypti]
Length = 177
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + P+DLR F + G + DIY+PRD +T E RGF FV++ D DA D
Sbjct: 12 DGMISLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAQD 71
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 72 ALDAMDGRMLDGRELRVQMA 91
>gi|440295453|gb|ELP88366.1| multiple RNA-binding domain containing protein, putative [Entamoeba
invadens IP1]
Length = 685
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+LV NL + C +D+R F +FG + +++LP D +G+ +GF FV Y+ P DA A M
Sbjct: 215 ILVNNLPYACSEQDVREAFEKFGEITEVHLPIDKVSGKTKGFAFVMYVVPQDAVKAFNEM 274
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRS---PPRYSRSPHYARGYSRS 156
DG ++ GR + V +A+ + P E+ +++Y +++ R S ++A Y R
Sbjct: 275 DGQVIKGRIIHVNYAKAD---PYAQTTEEKEAKTYKDKKANELKKRASNQFNWATLYMR- 330
Query: 157 PD 158
PD
Sbjct: 331 PD 332
Score = 39.7 bits (91), Expect = 0.85, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T LLV+NL + ++R F +G L+ + +P+ G+ +G+ F++Y +AA+AK
Sbjct: 604 TKLLVKNLPFETNLNEVRELFRVYGTLRGVRVPKKI-DGQLKGYAFIEYATKQEAANAKA 662
Query: 98 HMDGYLLLGRELTVVFAEE 116
M L GR L + FA+E
Sbjct: 663 AMANSHLYGRHLVIEFAKE 681
>gi|428179023|gb|EKX47896.1| hypothetical protein GUITHDRAFT_106442 [Guillardia theta CCMP2712]
Length = 563
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 48 DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107
D R ++L F +FGR+ D+Y+PR YY G PRGF FV++ + D A DG L GR
Sbjct: 321 DRRVDELEQVFNRFGRILDVYIPRSYYKGIPRGFAFVEFENYLDCKAALRSYDGTRLDGR 380
Query: 108 ELTVVFAEENRKKPSEMRARERFSR 132
L++ +A+ NRK EMR R R R
Sbjct: 381 VLSICYAQMNRKSSGEMRRRNRQPR 405
>gi|297282509|ref|XP_001113147.2| PREDICTED: splicing factor, arginine/serine-rich 13A-like [Macaca
mulatta]
Length = 98
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +++D + GR++ +
Sbjct: 10 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 69
Query: 112 VFAEENRKKPSEMRARERFSRSY 134
FA+ +RK ++S +Y
Sbjct: 70 QFAQGDRKSKPNCSWNTQYSSAY 92
>gi|449662790|ref|XP_004205613.1| PREDICTED: serine/arginine-rich splicing factor 12-like [Hydra
magnipapillata]
Length = 73
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87
RG PTS+ VRN+ HD RPEDLR F ++G + D+Y+P DYYT E RGF ++QY+
Sbjct: 4 RGGRTPTSVFVRNVHHDVRPEDLRRVFEKYGDISDVYVPLDYYTRESRGFAYIQYL 59
>gi|221117570|ref|XP_002161458.1| PREDICTED: uncharacterized protein LOC100200042 isoform 2 [Hydra
magnipapillata]
Length = 195
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + EDL F ++G L DIY+PRD T E RGF FV+Y + DA DA
Sbjct: 18 VSLKVDNLTYRTSMEDLERYFKKYGELGDIYIPRDRNTHESRGFAFVRYYEERDAEDAMD 77
Query: 98 HMDGYLLLGRELTVVFA 114
MDG ++ GRE+ V A
Sbjct: 78 SMDGKVIDGREIRVAMA 94
>gi|118481107|gb|ABK92507.1| unknown [Populus trichocarpa]
Length = 149
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 58/98 (59%), Gaps = 22/98 (22%)
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFS---RSYDGR-------------RSPPR 142
MDG + LGRELTVVFAEENRKKP +MRARER + R D R RSPP
Sbjct: 1 MDGRVFLGRELTVVFAEENRKKPVDMRARERTATRGRVGDRRRSPPRYSRSPRHSRSPP- 59
Query: 143 YSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRYRRY 180
P A S S DYYSPP RR SRS+SPR RRY
Sbjct: 60 ----PRNATSRSHSRDYYSPPKRR-HPSRSVSPRERRY 92
>gi|345486316|ref|XP_003425445.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Nasonia
vitripennis]
Length = 198
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD +T E RGF FV++ D DA D
Sbjct: 11 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAED 70
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG ++ GREL V A
Sbjct: 71 ALDAMDGRMVDGRELRVQMA 90
>gi|397516519|ref|XP_003828475.1| PREDICTED: uncharacterized protein LOC100992382 [Pan paniscus]
Length = 384
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA D
Sbjct: 157 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 216
Query: 95 AKYHMDGYLLLGRELTV 111
A+ MDG L GREL V
Sbjct: 217 AEAAMDGAELDGRELRV 233
>gi|326930671|ref|XP_003211466.1| PREDICTED: hypothetical protein LOC100548975 [Meleagris gallopavo]
Length = 239
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENR 118
MDG +L GR +E+ R
Sbjct: 74 AMDGAVLDGRXXXATRSEQWR 94
>gi|307169015|gb|EFN61874.1| Splicing factor, arginine/serine-rich 2 [Camponotus floridanus]
Length = 208
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD +T E RGF FV++ D DA DA
Sbjct: 14 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG LL GREL V A
Sbjct: 74 AMDGRLLDGRELRVQMA 90
>gi|114050755|ref|NP_001040152.1| Sr protein [Bombyx mori]
gi|87248221|gb|ABD36163.1| Sr protein [Bombyx mori]
Length = 154
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 49/80 (61%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ + DA +
Sbjct: 11 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 70
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A MDG +L GREL V A
Sbjct: 71 ALDTMDGRMLDGRELRVQMA 90
>gi|221487552|gb|EEE25784.1| splicing factor protein, putative [Toxoplasma gondii GT1]
Length = 633
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 41 LVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100
LV NL + EDLR FG FGR+ ++ +P+D TG RG+GFV Y ADA +A HM+
Sbjct: 331 LVDNLAK-IQEEDLRVLFGPFGRINEVEIPKDANTGGLRGYGFVTYASAADAHEAMQHMN 389
Query: 101 GYLLLGRELTVVFA 114
+ LLG++L V +A
Sbjct: 390 NFELLGQQLRVGYA 403
>gi|237830355|ref|XP_002364475.1| splicing factor protein, putative [Toxoplasma gondii ME49]
gi|211962139|gb|EEA97334.1| splicing factor protein, putative [Toxoplasma gondii ME49]
gi|221507345|gb|EEE32949.1| splicing factor protein, putative [Toxoplasma gondii VEG]
Length = 633
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 41 LVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100
LV NL + EDLR FG FGR+ ++ +P+D TG RG+GFV Y ADA +A HM+
Sbjct: 331 LVDNLAK-IQEEDLRVLFGPFGRINEVEIPKDANTGGLRGYGFVTYASAADAHEAMQHMN 389
Query: 101 GYLLLGRELTVVFA 114
+ LLG++L V +A
Sbjct: 390 NFELLGQQLRVGYA 403
>gi|118790804|ref|XP_318826.3| AGAP009742-PA [Anopheles gambiae str. PEST]
gi|116118108|gb|EAA14228.3| AGAP009742-PA [Anopheles gambiae str. PEST]
Length = 174
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 20 YRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPR 79
Y P PR D SL V NL + P+DLR F + G + DIY+PRD +T E R
Sbjct: 11 YARPPPR-------IDGMISLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESR 63
Query: 80 GFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
GF FV++ D DA DA MDG +L GREL V A
Sbjct: 64 GFAFVRFYDKRDAEDALDAMDGRMLDGRELRVQMA 98
>gi|124804262|ref|XP_001347950.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
gi|23496204|gb|AAN35863.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
Length = 914
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 13/154 (8%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D S+L+RNL +D P+ +R F G++KD+YLP D+YT +PRGFGFV+Y + A +
Sbjct: 3 DSGCSILIRNLNYDTSPDKVRKIFENVGKVKDVYLPLDHYTRKPRGFGFVEYFESKYAKE 62
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYS 154
A ++ + G E+ ++ A+ RK P M+ + +Y+ +Y R YS
Sbjct: 63 AINILNHSRIDGNEIRIIIAQNRRKSPDTMKFYHNEYLYNYRHKDNRKYNNCKNYKRKYS 122
Query: 155 RSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRS 188
+ YY R RS RY+ RS S S
Sbjct: 123 K---YY----RTDERDRS------RYKRRSTSSS 143
>gi|332837543|ref|XP_001139222.2| PREDICTED: uncharacterized protein LOC738374 [Pan troglodytes]
Length = 279
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+P + +T PRGF FV++ D +DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR 137
A+ MDG +L REL V A R+ E RS+ GR
Sbjct: 71 AEAAMDGAVLDERELRVRMARYGRRDLPRSSQEEPRGRSWGGR 113
>gi|326437616|gb|EGD83186.1| hypothetical protein PTSG_03817 [Salpingoeca sp. ATCC 50818]
Length = 204
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V N+ R EDLR F +FG + DIY+PR T +PRG+ FV++I+ DA DA H
Sbjct: 14 SVKVDNIDRSTREEDLREAFKEFGEIGDIYMPRYRDTMDPRGYAFVRFINERDAEDAIKH 73
Query: 99 MDGYLLLGRELTVVFAE 115
MDG L G+E+ A+
Sbjct: 74 MDGQQLNGKEVYCQLAK 90
>gi|343961547|dbj|BAK62363.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
Length = 221
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR ++GR+ D Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVSEKYGRVGDAYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|307106243|gb|EFN54489.1| hypothetical protein CHLNCDRAFT_17896, partial [Chlorella
variabilis]
Length = 63
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 48/62 (77%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109
R E++RG F ++G ++D+YLP+DYY+G P+GFGF++++D DA +A Y++D + GRE+
Sbjct: 1 RAEEVRGKFERYGPIRDVYLPKDYYSGRPKGFGFIEFLDIRDAEEAIYNLDRTMFGGREI 60
Query: 110 TV 111
V
Sbjct: 61 QV 62
>gi|291224278|ref|XP_002732132.1| PREDICTED: splicing factor, arginine/serine-rich 2-like
[Saccoglossus kowalevskii]
Length = 230
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 48/76 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL V NL + PEDLR F ++G + D+Y+PRD +T E RGF FV+Y D DA DA
Sbjct: 15 SLKVDNLTYRTTPEDLRRCFEKYGDVGDVYIPRDRFTRESRGFAFVRYYDKRDAEDALDA 74
Query: 99 MDGYLLLGRELTVVFA 114
MDG L GREL V A
Sbjct: 75 MDGATLDGRELRVQMA 90
>gi|443696471|gb|ELT97165.1| hypothetical protein CAPTEDRAFT_18729 [Capitella teleta]
Length = 160
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + EDLR F ++G + D+Y+PRD ++ E RGF FV++ D DA DA
Sbjct: 14 ASLKVDNLTYRTTTEDLRRAFEKYGDVGDVYIPRDRFSHESRGFAFVRFFDKRDADDAME 73
Query: 98 HMDGYLLLGRELTV 111
MDG ++ GREL V
Sbjct: 74 SMDGAVMDGRELRV 87
>gi|426356205|ref|XP_004045477.1| PREDICTED: uncharacterized protein LOC101137976 [Gorilla gorilla
gorilla]
Length = 496
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++ + D+Y+PR+ +T PRGF FV++ D +DA D
Sbjct: 205 DGMITLKVDNLTYRTSPDSLRRVFEKYWPVGDVYIPREPHTKAPRGFAFVRFHDRSDAQD 264
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR 137
A+ MDG +L GREL V A R+ E S+ GR
Sbjct: 265 AEAAMDGAVLDGRELRVRMARYGRRDLPRSSQEEPRGSSWGGR 307
>gi|345320496|ref|XP_001519931.2| PREDICTED: hypothetical protein LOC100090925, partial
[Ornithorhynchus anatinus]
Length = 369
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 49/71 (69%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109
R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +++D + GR++
Sbjct: 101 RSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQI 160
Query: 110 TVVFAEENRKK 120
+ FA+ +RK
Sbjct: 161 EIQFAQGDRKN 171
>gi|198415726|ref|XP_002129926.1| PREDICTED: similar to splicing factor, arginine/serine-rich 2
(SC-35) [Ciona intestinalis]
Length = 178
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 30 GGR---GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 86
GGR G D SL V NL + PE L+ F ++G + D+Y+PRD Y+ E RGF FV++
Sbjct: 4 GGRPPPGLDNMVSLKVDNLTYRTSPETLKRSFEKYGDVGDVYIPRDRYSRESRGFAFVRF 63
Query: 87 IDPADAADAKYHMDGYLLLGRELTVVFA 114
D DA DA MDG + GR L V A
Sbjct: 64 YDKRDAEDAMDCMDGKTMDGRVLRVAMA 91
>gi|312066967|ref|XP_003136521.1| hypothetical protein LOAG_00933 [Loa loa]
Length = 345
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 72/140 (51%), Gaps = 28/140 (20%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPR--GFGFVQYIDP 89
R ++PT L VR + + RP+DLR F + G ++D+Y+P DYYT E R G G VQ
Sbjct: 9 RDDEIPT-LYVRQVHYSARPDDLRALFERMGPVRDVYIPLDYYTRESRVGGVGKVQAFSV 67
Query: 90 A--------------------DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+ DA DA ++G +LGR + V +AE RK +EMRAR+
Sbjct: 68 SGISSTNYQANLQVQVFEFTRDAEDALRKLNGASILGRPIEVEWAEGQRKTKTEMRARD- 126
Query: 130 FSRSYDGRRSPPRY-SRSPH 148
SY R RY SRSPH
Sbjct: 127 ---SYSSYRVRNRYRSRSPH 143
>gi|261335957|emb|CBH09290.1| putative Sr protein [Heliconius melpomene]
Length = 165
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA +A
Sbjct: 14 VSLKVDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDRRDAEEALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
+DG +L GREL V A
Sbjct: 74 SLDGRMLDGRELRVQMA 90
>gi|389609107|dbj|BAM18165.1| serine/arginine rich splicing factor [Papilio xuthus]
Length = 151
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 47/77 (61%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + EDLR F + G + DIY+PRD YT E RGF FV++ D DA DA
Sbjct: 2 VSLKVDNLTYRTTAEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFFDRRDAEDALD 61
Query: 98 HMDGYLLLGRELTVVFA 114
+DG +L GREL V A
Sbjct: 62 SLDGRMLDGRELRVQMA 78
>gi|401411525|ref|XP_003885210.1| hypothetical protein NCLIV_056060 [Neospora caninum Liverpool]
gi|325119629|emb|CBZ55182.1| hypothetical protein NCLIV_056060 [Neospora caninum Liverpool]
Length = 642
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 49 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108
+ EDLR FG FGR+ ++ +P+D TG RG+GFV Y ADA +A HM+ + LLG++
Sbjct: 343 IQEEDLRVLFGPFGRINEVEIPKDANTGGLRGYGFVTYASAADAHEAMQHMNNFELLGQQ 402
Query: 109 LTVVFA 114
L V +A
Sbjct: 403 LRVGYA 408
>gi|254424963|ref|ZP_05038681.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
gi|196192452|gb|EDX87416.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
Length = 92
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + + EDL G FG++G +K I LP D TG PRGF FV+ + A A
Sbjct: 2 SIYVGNLSYSAKEEDLEGVFGEYGTVKRITLPTDRETGRPRGFAFVEMEEDATEEKAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+DG +GREL V N+ KP E R R
Sbjct: 62 LDGAEWMGRELRV-----NKAKPREPRNR 85
>gi|156349201|ref|XP_001621959.1| hypothetical protein NEMVEDRAFT_v1g143061 [Nematostella vectensis]
gi|156381130|ref|XP_001632119.1| predicted protein [Nematostella vectensis]
gi|156208328|gb|EDO29859.1| predicted protein [Nematostella vectensis]
gi|156219170|gb|EDO40056.1| predicted protein [Nematostella vectensis]
Length = 127
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + EDL+ F ++G L DIY+PRD T E RGF FV++ + DA DA
Sbjct: 16 TSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMD 75
Query: 98 HMDGYLLLGRELTVVFA 114
MD +LL GRE+ V A
Sbjct: 76 CMDRHLLDGREVRVQMA 92
>gi|15237641|ref|NP_201225.1| splicing factor, arginine/serine-rich 2 [Arabidopsis thaliana]
gi|30697964|ref|NP_851261.1| splicing factor, arginine/serine-rich 2 [Arabidopsis thaliana]
gi|9759396|dbj|BAB09851.1| unnamed protein product [Arabidopsis thaliana]
gi|17380868|gb|AAL36246.1| unknown protein [Arabidopsis thaliana]
gi|21689657|gb|AAM67450.1| unknown protein [Arabidopsis thaliana]
gi|22022546|gb|AAM83231.1| AT5g64200/MSJ1_4 [Arabidopsis thaliana]
gi|23505861|gb|AAN28790.1| At5g64200/MSJ1_4 [Arabidopsis thaliana]
gi|332010470|gb|AED97853.1| splicing factor, arginine/serine-rich 2 [Arabidopsis thaliana]
gi|332010471|gb|AED97854.1| splicing factor, arginine/serine-rich 2 [Arabidopsis thaliana]
Length = 303
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 99 MDGYLLLGRELTVVFAE--ENRKKPSEMRARE 128
+DG ++ GRE+TV FA+ N +K S+ R E
Sbjct: 77 LDGRVVDGREITVQFAKYGPNAEKISKGRVVE 108
>gi|9843653|emb|CAC03600.1| splicing factor SC35 [Arabidopsis thaliana]
Length = 303
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 99 MDGYLLLGRELTVVFAE--ENRKKPSEMRARE 128
+DG ++ GRE+TV FA+ N +K S+ R E
Sbjct: 77 LDGRVVDGREITVQFAKYGPNAEKISKGRVVE 108
>gi|270012859|gb|EFA09307.1| hypothetical protein TcasGA2_TC030627 [Tribolium castaneum]
Length = 161
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD +T E RGF FV+Y D DA DA
Sbjct: 14 VSLKVDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRFTRESRGFAFVRYRDAEDALDA-- 71
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 72 -MDGRMLDGRELRVQMA 87
>gi|443429415|gb|AGC92700.1| serine/arginine-rich splicing factor 2-like protein [Heliconius
erato]
Length = 168
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA +A
Sbjct: 14 VSLKVDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDRRDAEEALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
+DG +L GREL V A
Sbjct: 74 SLDGRMLDGRELRVQMA 90
>gi|356512057|ref|XP_003524737.1| PREDICTED: uncharacterized protein LOC100804370 [Glycine max]
Length = 267
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++P+D TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRMVDGREITVQFAK 93
>gi|328773933|gb|EGF83970.1| hypothetical protein BATDEDRAFT_36405 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
+ S+ VR + D DL F ++G++ DIY+P+ Y+ G PRGF +V++ DA A
Sbjct: 2 VARSIYVRGVPPDASSSDLMEHFEEYGKVNDIYIPKSYHNGRPRGFAYVKFDKQEDAELA 61
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+ ++LG+ L V +A RK ++MR
Sbjct: 62 MEKIPSIVILGQTLNVEWATGERKTSNDMR 91
>gi|393910359|gb|EJD75841.1| hypothetical protein LOAG_17093 [Loa loa]
Length = 203
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL + N+ + P+DLR F ++G + DI++PRD YT + +GFGFV++ DA A
Sbjct: 15 SLKIDNISYQTAPQDLRRLFEKYGEIGDIHIPRDRYTKQSKGFGFVRFYSRRDAEYAMDR 74
Query: 99 MDGYLLLGRELTVVFA 114
MDG + GRE+ V A
Sbjct: 75 MDGRWVDGREIRVAMA 90
>gi|297797433|ref|XP_002866601.1| hypothetical protein ARALYDRAFT_496619 [Arabidopsis lyrata subsp.
lyrata]
gi|297312436|gb|EFH42860.1| hypothetical protein ARALYDRAFT_496619 [Arabidopsis lyrata subsp.
lyrata]
Length = 305
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 99 MDGYLLLGRELTVVFAE--ENRKKPSEMRARE 128
+DG ++ GRE+TV FA+ N +K S+ R E
Sbjct: 77 LDGRVVDGREITVQFAKYGPNAEKISKGRVVE 108
>gi|242005811|ref|XP_002423754.1| serine/arginine rich splicing factor, putative [Pediculus humanus
corporis]
gi|212506956|gb|EEB11016.1| serine/arginine rich splicing factor, putative [Pediculus humanus
corporis]
Length = 246
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL P+DLR F + G + DIY+PRD ++ E RGF FV++ D DA DA
Sbjct: 61 VSLKVDNLTFRTTPDDLRRVFERCGEVGDIYIPRDRFSRESRGFAFVRFYDKRDAEDALD 120
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 121 AMDGRILDGRELRVQMA 137
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 86
TSL V N+ + R DL FG+FG + D+Y+PRD ++ RGF FV Y
Sbjct: 2 TSLKVGNISYRTRTLDLHHIFGKFGDVGDVYIPRDKHSKHSRGFAFVSY 50
>gi|357490717|ref|XP_003615646.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
gi|217073250|gb|ACJ84984.1| unknown [Medicago truncatula]
gi|355516981|gb|AES98604.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
Length = 267
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TGE RGF FV+Y +A+ A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRMVDGREITVQFAK 93
>gi|159164254|pdb|2DNM|A Chain A, Solution Structure Of Rna Binding Domain In Srp46 Splicing
Factor
Length = 103
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A+ MDG L GREL V A R+ S
Sbjct: 71 AEAAMDGAELDGRELRVQVARYGRRDLS 98
>gi|356524836|ref|XP_003531034.1| PREDICTED: uncharacterized protein LOC100778928 [Glycine max]
Length = 267
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++P+D TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRMVDGREITVQFAK 93
>gi|3334756|emb|CAA76346.1| putative arginine/serine-rich splicing factor [Medicago sativa
subsp. x varia]
Length = 286
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++P+D TGE RGF FV+Y +A+ A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRMVDGREITVQFAK 93
>gi|217073798|gb|ACJ85259.1| unknown [Medicago truncatula]
Length = 280
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++P+D TGE RGF FV+Y +A+ A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRMVDGREITVQFAK 93
>gi|321458047|gb|EFX69122.1| hypothetical protein DAPPUDRAFT_62581 [Daphnia pulex]
Length = 109
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + EDLR F ++G + D+Y+P+D ++ E RGF FV++ D D DA +
Sbjct: 13 TSLKVDNLTYRTTCEDLRRVFEKYGDVGDVYIPKDRFSRESRGFAFVRFYDRRDGEDAMH 72
Query: 98 HMDGYLLLGRELTVVFA 114
MDG ++ GREL V A
Sbjct: 73 AMDGRMMDGRELRVQLA 89
>gi|443730022|gb|ELU15717.1| hypothetical protein CAPTEDRAFT_175255 [Capitella teleta]
Length = 163
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 48/78 (61%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + EDL F ++G + D+Y+PRD YT E +GF FV+Y + DA DA
Sbjct: 12 VSLKVDNLTYRTSKEDLLQAFEKYGEVGDVYIPRDPYTRENKGFAFVRYYEKRDAEDAID 71
Query: 98 HMDGYLLLGRELTVVFAE 115
MDG +L GREL V A+
Sbjct: 72 SMDGAVLDGRELRVQTAK 89
>gi|226476662|emb|CAX72223.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
Length = 151
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + +DLR F +FG + DIY+PRD YT E RGF FV+Y +A
Sbjct: 12 DGMVSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPYTFESRGFAFVRYCTDREADC 71
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A MDG+ + GRE+ V A+ R P+
Sbjct: 72 AIRGMDGHKVDGREVRVQIAKYGRPTPN 99
>gi|348019723|gb|AEP43803.1| SR-protein [Biston betularia]
Length = 152
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 20 YRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPR 79
Y P PR D SL V NL + PEDLR F + G + DIY+PRD YT E R
Sbjct: 3 YGRPPPR-------IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESR 55
Query: 80 GFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
GF FV++ D DA +A +DG +L GREL V A
Sbjct: 56 GFAFVRFYDRRDAEEALDSLDGRMLDGRELRVQMA 90
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 43/100 (43%), Gaps = 35/100 (35%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + PEDLR F + G + DIY+PRD YT E RGF FV++ D DA +A
Sbjct: 14 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDRRDAEEA-- 71
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR 137
+D S DGR
Sbjct: 72 -LD--------------------------------SLDGR 78
>gi|410445335|gb|ADB77883.2| Rbmy [Bos taurus]
Length = 387
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P LL+ L + E L FG++G + ++ L +D T + RGF F+ + PADA D
Sbjct: 4 DRPGKLLIGGLSAETTEESLEAEFGKYGHIVEVLLIKDRNTNKSRGFAFITFESPADAKD 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS-EMRARERF 130
A M+G L G+ + V E KPS E R++
Sbjct: 64 AAKEMNGKFLDGKTIKV----EQANKPSFESGGRQKL 96
>gi|388519919|gb|AFK48021.1| unknown [Medicago truncatula]
Length = 281
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++P+D TGE RGF FV+Y +A+ A
Sbjct: 17 SLLVLNVTFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRMVDGREITVQFAK 93
>gi|255642028|gb|ACU21281.1| unknown [Glycine max]
Length = 254
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++P+D TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRMVDGREITVQFAK 93
>gi|255581357|ref|XP_002531488.1| serine/arginine rich splicing factor, putative [Ricinus communis]
gi|223528897|gb|EEF30895.1| serine/arginine rich splicing factor, putative [Ricinus communis]
Length = 257
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>gi|357608819|gb|EHJ66166.1| putative serine/arginine rich splicing factor [Danaus plexippus]
Length = 165
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 48/77 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + P+DLR F + G + DIY+PRD YT E RGF FV++ + DA +A
Sbjct: 14 VSLKVDNLTYRTTPDDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 73
Query: 98 HMDGYLLLGRELTVVFA 114
+DG +L GREL V A
Sbjct: 74 SLDGRMLDGRELRVQMA 90
>gi|414867083|tpg|DAA45640.1| TPA: hypothetical protein ZEAMMB73_077445 [Zea mays]
gi|448878222|gb|AGE46074.1| arginine/serine-rich splicing factor SC26 transcript III [Zea mays]
Length = 198
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DIY+PRD+ TG+PRGF FV+Y +A DA
Sbjct: 17 SLLVLNVSFRTTADDLFPLFDRYGKVLDIYIPRDHRTGDPRGFAFVRYNYEDEAQDAIDG 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG GR L V FA+
Sbjct: 77 LDGMRFDGRALMVQFAK 93
>gi|225448281|ref|XP_002274860.1| PREDICTED: uncharacterized protein LOC100242306 [Vitis vinifera]
gi|296086805|emb|CBI32954.3| unnamed protein product [Vitis vinifera]
Length = 255
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPFFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRIVDGREITVQFAK 93
>gi|414867082|tpg|DAA45639.1| TPA: splicing factor, arginine/serine-rich 2 [Zea mays]
Length = 216
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DIY+PRD+ TG+PRGF FV+Y +A DA
Sbjct: 17 SLLVLNVSFRTTADDLFPLFDRYGKVLDIYIPRDHRTGDPRGFAFVRYNYEDEAQDAIDG 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG GR L V FA+
Sbjct: 77 LDGMRFDGRALMVQFAK 93
>gi|313235509|emb|CBY10964.1| unnamed protein product [Oikopleura dioica]
Length = 360
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 55/87 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+S+ +R + RP++++ F +FG +K+I +P D+ T EPRGF +V + + A +A+
Sbjct: 11 SSICIRPIDACIRPDEIKAEFKEFGEIKEIRIPVDFETREPRGFAYVDFEEVESAIEARD 70
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEM 124
++G +L R++ V ++ +K PSEM
Sbjct: 71 IINGRILFDRKVQVYYSNGTKKLPSEM 97
>gi|301765996|ref|XP_002918431.1| PREDICTED: hypothetical protein LOC100477809 [Ailuropoda
melanoleuca]
Length = 182
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLG 106
MDG +L G
Sbjct: 74 AMDGAVLDG 82
>gi|281342789|gb|EFB18373.1| hypothetical protein PANDA_006871 [Ailuropoda melanoleuca]
Length = 173
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLG 106
MDG +L G
Sbjct: 74 AMDGAVLDG 82
>gi|218200049|gb|EEC82476.1| hypothetical protein OsI_26921 [Oryza sativa Indica Group]
Length = 271
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G + DIY+PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+ V FA+
Sbjct: 77 LDGRVVDGREIMVQFAK 93
>gi|428177144|gb|EKX46025.1| hypothetical protein GUITHDRAFT_70912, partial [Guillardia theta
CCMP2712]
Length = 84
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 42 VRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101
VRN+ +DLR FG++G +KD+Y+P DYYT P+ F FV++I+ +A DAK MD
Sbjct: 1 VRNIGDRTDGQDLRELFGRYGTVKDVYIPIDYYTKRPKPFAFVEFINYEEARDAKEDMDR 60
Query: 102 YLLLGRELTVVFAEE 116
GR + VVFA++
Sbjct: 61 REFQGRVIDVVFAQQ 75
>gi|115473447|ref|NP_001060322.1| Os07g0623300 [Oryza sativa Japonica Group]
gi|33146621|dbj|BAC79909.1| putative splicing factor, arginine/serine-rich 2 (Splicing factor
SC35) [Oryza sativa Japonica Group]
gi|113611858|dbj|BAF22236.1| Os07g0623300 [Oryza sativa Japonica Group]
gi|215687327|dbj|BAG91873.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637485|gb|EEE67617.1| hypothetical protein OsJ_25178 [Oryza sativa Japonica Group]
Length = 275
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G + DIY+PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+ V FA+
Sbjct: 77 LDGRVVDGREIMVQFAK 93
>gi|224138530|ref|XP_002322837.1| predicted protein [Populus trichocarpa]
gi|222867467|gb|EEF04598.1| predicted protein [Populus trichocarpa]
Length = 179
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 89/183 (48%), Gaps = 32/183 (17%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L V +L R DL F ++GR++D+ + RDY FV++ DP DA DA++
Sbjct: 11 TRLYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDY--------AFVEFSDPRDADDARH 62
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS------PHYAR 151
++DG G + V FA + R SR Y GR PP R H+AR
Sbjct: 63 YLDGKDFDGSRIIVEFA----------KGVPRGSREYLGRGPPPGSGRCFNCGIDGHWAR 112
Query: 152 GYSRSPDYYSPPPR---RGRDSRSI--SPRYRRYRERSYSRSPYGSRSYSPSRSRSRSLD 206
++ D+ + R RG R+ SP+ R RSYSRSP RS SP R RSRS
Sbjct: 113 D-CKAGDWKNKCYRCGERGHIERNCKNSPKKLTKRGRSYSRSP--DRSPSPHRGRSRSPS 169
Query: 207 YSR 209
YSR
Sbjct: 170 YSR 172
>gi|448878429|gb|AGE46177.1| arginine/serine-rich splicing factor SCL42 transcript II
[Physcomitrella patens subsp. patens]
Length = 106
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 56/81 (69%), Gaps = 6/81 (7%)
Query: 1 MRGRSYSYSPSPPR---DYGRRYRSPSPRGHYGGRGRD--LPTSLLVRNLRHDCRPEDLR 55
MRGRS SPPR G R RSPSPRG GG GRD P+SLLVRN+ DC EDLR
Sbjct: 1 MRGRS-PLGHSPPRRSHGGGNRRRSPSPRGGRGGYGRDSTEPSSLLVRNIPRDCSAEDLR 59
Query: 56 GPFGQFGRLKDIYLPRDYYTG 76
PF ++G +KD+YLPRDYYTG
Sbjct: 60 IPFERYGVVKDVYLPRDYYTG 80
>gi|293334639|ref|NP_001169755.1| uncharacterized protein LOC100383636 [Zea mays]
gi|224031469|gb|ACN34810.1| unknown [Zea mays]
gi|414887660|tpg|DAA63674.1| TPA: hypothetical protein ZEAMMB73_707044 [Zea mays]
gi|414887661|tpg|DAA63675.1| TPA: hypothetical protein ZEAMMB73_707044 [Zea mays]
Length = 246
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G + DIY+PRD TG+ RGF FV+Y +A A
Sbjct: 18 SLLVLNITFRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVER 77
Query: 99 MDGYLLLGRELTVVFAE 115
+DG L+ GRE+ V FA+
Sbjct: 78 LDGRLVDGREIMVQFAK 94
>gi|256092430|ref|XP_002581940.1| serine/arginine rich splicing factor [Schistosoma mansoni]
gi|353230938|emb|CCD77355.1| putative serine/arginine rich splicing factor [Schistosoma mansoni]
Length = 151
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + +DLR F +FG + DIY+PRD YT E RGF FV+Y +A
Sbjct: 12 DGMVSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPYTFESRGFAFVRYCTDREADC 71
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A MDG+ + GRE+ V A+ R P+
Sbjct: 72 AIRGMDGHKVDGREVRVQRAKYGRPTPN 99
>gi|3892187|gb|AAC78303.1| RNA-binding protein [Schistosoma japonicum]
gi|226476664|emb|CAX72224.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226476666|emb|CAX72225.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226476668|emb|CAX72226.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226476670|emb|CAX72227.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226476672|emb|CAX72228.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226476674|emb|CAX72229.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481907|emb|CAX79219.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481909|emb|CAX79220.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481911|emb|CAX79221.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481913|emb|CAX79222.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481915|emb|CAX79223.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481917|emb|CAX79224.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481919|emb|CAX79225.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481923|emb|CAX79227.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481925|emb|CAX79228.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481927|emb|CAX79229.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481929|emb|CAX79230.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481933|emb|CAX79232.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481935|emb|CAX79233.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481937|emb|CAX79234.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481939|emb|CAX79235.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481941|emb|CAX79236.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481943|emb|CAX79237.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481945|emb|CAX79238.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481947|emb|CAX79239.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481949|emb|CAX79240.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481951|emb|CAX79241.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481953|emb|CAX79242.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481955|emb|CAX79243.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481957|emb|CAX79244.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481959|emb|CAX79245.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|226481961|emb|CAX79246.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
Length = 151
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + +DLR F +FG + DIY+PRD YT E RGF FV+Y +A
Sbjct: 12 DGMVSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPYTFESRGFAFVRYCTDREADC 71
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A MDG+ + GRE+ V A+ R P+
Sbjct: 72 AIRGMDGHKVDGREVRVQRAKYGRPTPN 99
>gi|320165916|gb|EFW42815.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 113
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 86
+L VRNL +D RP+D+R F + G +KDIYLPRDYY+ + RGFG+V+Y
Sbjct: 62 ATLHVRNLTYDARPDDIREIFAKCGNVKDIYLPRDYYSNKLRGFGYVEY 110
>gi|449478880|ref|XP_004155443.1| PREDICTED: uncharacterized protein LOC101223695 [Cucumis sativus]
Length = 283
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGTMVDGREITVQFAK 93
>gi|414866978|tpg|DAA45535.1| TPA: hypothetical protein ZEAMMB73_960766 [Zea mays]
Length = 202
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 41/49 (83%)
Query: 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
RGFGFV+Y+D DA++AK++MDG ++LGR+L VV+A++ RK PS MR R
Sbjct: 7 RGFGFVEYVDLEDASNAKHYMDGQIVLGRKLRVVYAQDVRKSPSAMRLR 55
>gi|347446708|ref|NP_001231529.1| ELAV-like protein 4 isoform 1 [Danio rerio]
Length = 411
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
PSP GG D T+L+V L + E+ R FG G ++ L RD TG+ G+
Sbjct: 73 CPSPM-QTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 131
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
GFV YIDP DA A ++G L + + V +A
Sbjct: 132 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 164
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 329 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 388
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 389 LNGYRLGDRVLQVSF 403
>gi|347446713|ref|NP_571528.2| ELAV-like protein 4 isoform 3 [Danio rerio]
Length = 403
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
PSP GG D T+L+V L + E+ R FG G ++ L RD TG+ G+
Sbjct: 65 CPSPM-QTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 123
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
GFV YIDP DA A ++G L + + V +A
Sbjct: 124 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 156
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 321 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 380
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 381 LNGYRLGDRVLQVSFKTNKTHK 402
>gi|17532817|ref|NP_495013.1| Protein RSP-4, isoform a [Caenorhabditis elegans]
gi|3929375|sp|Q09511.1|RSP4_CAEEL RecName: Full=Probable splicing factor, arginine/serine-rich 4;
AltName: Full=CeSC35; AltName: Full=RNA-binding protein
srp-2
gi|351060987|emb|CCD68734.1| Protein RSP-4, isoform a [Caenorhabditis elegans]
Length = 196
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + P DLR F ++G + D+++PRD Y+ + +GFGFV++ + DA A
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 98 HMDGYLLLGRELTVVFAEENR 118
DG L+ GREL V A+ +R
Sbjct: 79 RTDGKLVDGRELRVTLAKYDR 99
>gi|113478077|ref|YP_724138.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110169125|gb|ABG53665.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 102
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D +DL F ++G +K + LP D TG PRGFGFV+ + A
Sbjct: 2 SIYVGNLSYDVTQDDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSENEEQKAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHY 149
+DG +GR++ V N+ KP E R S RR+ P YSR +
Sbjct: 62 LDGAEWMGRDIKV-----NKAKPREDRG------SGGNRRNSPNYSRGGKF 101
>gi|449438193|ref|XP_004136874.1| PREDICTED: uncharacterized protein LOC101219227 [Cucumis sativus]
Length = 283
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGTMVDGREITVQFAK 93
>gi|608549|gb|AAA96940.1| ribonucleoprotein [Danio rerio]
gi|68085524|gb|AAH65965.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Danio rerio]
Length = 367
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
PSP GG D T+L+V L + E+ R FG G ++ L RD TG+ G+
Sbjct: 29 CPSPM-QTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 87
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
GFV YIDP DA A ++G L + + V +A
Sbjct: 88 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 120
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 285 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 345 LNGYRLGDRVLQVSFKTNKTHK 366
>gi|347446711|ref|NP_001231530.1| ELAV-like protein 4 isoform 2 [Danio rerio]
Length = 398
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
PSP GG D T+L+V L + E+ R FG G ++ L RD TG+ G+
Sbjct: 60 CPSPM-QTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 118
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
GFV YIDP DA A ++G L + + V +A
Sbjct: 119 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 151
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 316 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 375
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 376 LNGYRLGDRVLQVSFKTNKTHK 397
>gi|167518892|ref|XP_001743786.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777748|gb|EDQ91364.1| predicted protein [Monosiga brevicollis MX1]
Length = 209
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V N+ D + +R F FG + DIY+PRD T RGF FV++ + ADA
Sbjct: 11 DAMFSLKVDNITSDMTEDMMRDLFKDFGEIGDIYMPRDRNTNRSRGFCFVRFYEEADADK 70
Query: 95 AKYHMDGYLLLGRELTVVFAE 115
A MDG+ GR+L V A+
Sbjct: 71 AAEKMDGHAFEGRDLIVQKAK 91
>gi|448878433|gb|AGE46179.1| arginine/serine-rich splicing factor SCL42 transcript IV
[Physcomitrella patens subsp. patens]
Length = 103
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 56/81 (69%), Gaps = 6/81 (7%)
Query: 1 MRGRSYSYSPSPPR---DYGRRYRSPSPRGHYGGRGRD--LPTSLLVRNLRHDCRPEDLR 55
MRGRS SPPR G R RSPSPRG GG GRD P+SLLVRN+ DC EDLR
Sbjct: 1 MRGRS-PLGHSPPRRSHGGGNRRRSPSPRGGRGGYGRDSTEPSSLLVRNIPRDCSAEDLR 59
Query: 56 GPFGQFGRLKDIYLPRDYYTG 76
PF ++G +KD+YLPRDYYTG
Sbjct: 60 IPFERYGVVKDVYLPRDYYTG 80
>gi|67920522|ref|ZP_00514042.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|416377747|ref|ZP_11683649.1| RNA-binding protein [Crocosphaera watsonii WH 0003]
gi|67858006|gb|EAM53245.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|357266170|gb|EHJ14837.1| RNA-binding protein [Crocosphaera watsonii WH 0003]
Length = 94
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
++ V N+ +D PEDL FG +G +K + LP D TG+PRGFGFV+ + + A
Sbjct: 2 TIYVGNISYDVTPEDLTEVFGDYGTVKRVSLPTDRETGKPRGFGFVEMDNDDEETAAIEE 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG LGR++ V N+ KP E +
Sbjct: 62 LDGAEWLGRQMRV-----NKAKPRENKG 84
>gi|448878431|gb|AGE46178.1| arginine/serine-rich splicing factor SCL42 transcript III
[Physcomitrella patens subsp. patens]
Length = 80
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 56/81 (69%), Gaps = 6/81 (7%)
Query: 1 MRGRSYSYSPSPPR---DYGRRYRSPSPRGHYGGRGRD--LPTSLLVRNLRHDCRPEDLR 55
MRGRS SPPR G R RSPSPRG GG GRD P+SLLVRN+ DC EDLR
Sbjct: 1 MRGRS-PLGHSPPRRSHGGGNRRRSPSPRGGRGGYGRDSTEPSSLLVRNIPRDCSAEDLR 59
Query: 56 GPFGQFGRLKDIYLPRDYYTG 76
PF ++G +KD+YLPRDYYTG
Sbjct: 60 IPFERYGVVKDVYLPRDYYTG 80
>gi|189502900|gb|ACE06831.1| unknown [Schistosoma japonicum]
Length = 138
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + +DLR F +FG + DIY+PRD YT E RGF FV+Y +A A
Sbjct: 2 VSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPYTFESRGFAFVRYCTDREADCAIR 61
Query: 98 HMDGYLLLGRELTVVFAEENRKKPS 122
MDG+ + GRE+ V A+ R P+
Sbjct: 62 GMDGHKVDGREVRVQRAKYGRPTPN 86
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL VRNL E+L F FG++ D +PRDY TG +G+GFV+Y + +AA+A
Sbjct: 308 SSLYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAII 367
Query: 98 HMDGYLLLGRELTV 111
H++G+L+ G+++ V
Sbjct: 368 HLNGHLVEGKKMEV 381
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 14 RDYGRRYRSPSPRGHYGGRGRDL-PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRD 72
+ G+R P GG+ +++ T+L V NL L F FGR+ + +
Sbjct: 179 KHLGKRQEHTLPLSQEGGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGRIVRSKVADE 238
Query: 73 YYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
+TG +G+GFV+Y DP A A M+G L+ G+ L V
Sbjct: 239 CFTGLSKGYGFVKYDDPHSATAAINRMNGRLVDGKILEV 277
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 30 GGRGRDLPTS-LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
G GR + + L V +L E L F G++ + D YTG +GFGFV++ D
Sbjct: 696 GNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFAD 755
Query: 89 PADAADAKYHMDGYLLLGRELTVVFA 114
AA A HM+GY L G L V A
Sbjct: 756 TYSAAVALTHMNGYPLEGHILEVRIA 781
>gi|118484490|gb|ABK94120.1| unknown [Populus trichocarpa]
Length = 302
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYAEEAQKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+ V FA+
Sbjct: 77 LDGRVVDGREIMVQFAK 93
>gi|13898849|gb|AAK48899.1|AF357912_1 ribonucleoprotein [Labeo rohita]
Length = 179
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
PSP GG D T+L+V L + E+ R FG G ++ L RD TG+ G+
Sbjct: 60 CPSPM-QTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 118
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTV 111
GFV YIDP DA A ++G L + + V
Sbjct: 119 GFVNYIDPKDAEKAINTLNGLRLQTKTIKV 148
>gi|226530532|ref|NP_001140562.1| uncharacterized protein LOC100272627 [Zea mays]
gi|194699996|gb|ACF84082.1| unknown [Zea mays]
gi|414590932|tpg|DAA41503.1| TPA: hypothetical protein ZEAMMB73_776046 [Zea mays]
Length = 251
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G + DIY+PRD TG+ RGF FV+Y +A A
Sbjct: 18 SLLVLNITFRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 77
Query: 99 MDGYLLLGRELTVVFAE 115
+DG L+ GRE+ V FA+
Sbjct: 78 LDGRLVDGREIMVQFAK 94
>gi|168064593|ref|XP_001784245.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664211|gb|EDQ50939.1| predicted protein [Physcomitrella patens subsp. patens]
gi|448878415|gb|AGE46170.1| arginine/serine-rich splicing factor SC37 transcript I
[Physcomitrella patens subsp. patens]
gi|448878417|gb|AGE46171.1| arginine/serine-rich splicing factor SC37 transcript II
[Physcomitrella patens subsp. patens]
Length = 319
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 10/115 (8%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTSADDLYPLFDRYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAIER 76
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRAR------ERFSRSYDGRRSP--PRYSR 145
+DG + GR + V FA+ RK R R +R SRS RSP PR SR
Sbjct: 77 LDGREVDGRHIVVQFAKYGRKDEPIQRGRITDTGMKRVSRS--ASRSPKRPRSSR 129
>gi|226476676|emb|CAX72230.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
Length = 151
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + +DLR F +FG + DIY+PRD YT E RGF FV+Y +A
Sbjct: 12 DGMVSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPYTFESRGFAFVRYYTDREADC 71
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A MDG+ + GRE+ V A+ R P+
Sbjct: 72 AIRGMDGHKVDGREVRVQRAKYGRPTPN 99
>gi|17532819|ref|NP_495014.1| Protein RSP-4, isoform b [Caenorhabditis elegans]
gi|351060988|emb|CCD68735.1| Protein RSP-4, isoform b [Caenorhabditis elegans]
Length = 126
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + P DLR F ++G + D+++PRD Y+ + +GFGFV++ + DA A
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 98 HMDGYLLLGRELTVVFAEENR 118
DG L+ GREL V A+ +R
Sbjct: 79 RTDGKLVDGRELRVTLAKYDR 99
>gi|268531152|ref|XP_002630702.1| C. briggsae CBR-RSP-4 protein [Caenorhabditis briggsae]
Length = 195
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + P DLR F ++G + D+++PRD Y+ + +GFGFV++ + DA A
Sbjct: 18 TSLKIDNLSYQTTPNDLRRVFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 77
Query: 98 HMDGYLLLGRELTVVFAEENR 118
DG L+ GREL V A+ +R
Sbjct: 78 RTDGKLVDGRELRVTLAKYDR 98
>gi|448878218|gb|AGE46072.1| arginine/serine-rich splicing factor SC26 transcript I [Zea mays]
Length = 218
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+LV N+ +DL F ++G++ DIY+PRD+ TG+PRGF FV+Y +A DA
Sbjct: 19 SILVLNVSFRTTADDLFPLFDRYGKVLDIYIPRDHRTGDPRGFAFVRYNYEDEARDAIDG 78
Query: 99 MDGYLLLGRELTVVFAE 115
+DG GR L V FA+
Sbjct: 79 LDGMRFDGRALMVQFAK 95
>gi|308493715|ref|XP_003109047.1| CRE-RSP-4 protein [Caenorhabditis remanei]
gi|308247604|gb|EFO91556.1| CRE-RSP-4 protein [Caenorhabditis remanei]
Length = 199
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + P DLR F ++G + D+++PRD Y+ + +GFGFV++ + DA A
Sbjct: 18 TSLKIDNLSYQTTPNDLRRVFDRYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 77
Query: 98 HMDGYLLLGRELTVVFAEENR 118
DG L+ GREL V A+ +R
Sbjct: 78 RTDGKLVDGRELRVTLAKYDR 98
>gi|388505176|gb|AFK40654.1| unknown [Medicago truncatula]
Length = 267
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ + L F ++G++ DI++PRD TGE RGF FV+Y +A+ A
Sbjct: 17 SLLVLNITFRTTADGLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRMVDGREITVQFAK 93
>gi|357121974|ref|XP_003562691.1| PREDICTED: uncharacterized protein LOC100826320 [Brachypodium
distachyon]
Length = 238
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G + DIY+PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG L+ GRE+ V FA+
Sbjct: 77 LDGRLVDGREMMVQFAK 93
>gi|324510397|gb|ADY44347.1| Splicing factor, arginine/serine-rich 4 [Ascaris suum]
gi|324520781|gb|ADY47708.1| Splicing factor, arginine/serine-rich 4 [Ascaris suum]
Length = 122
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL + N+ + P+DLR F ++G + DI++PRD YT + +GFGFV+Y DA A
Sbjct: 15 SLKIDNISYQTTPQDLRRLFEKYGEIGDIHIPRDRYTKQSKGFGFVRYYSRRDAEYAMDR 74
Query: 99 MDGYLLLGRELTVVFA 114
MDG + GRE+ V A
Sbjct: 75 MDGRWIDGREIRVALA 90
>gi|444520122|gb|ELV12918.1| Serine/arginine-rich splicing factor 2 [Tupaia chinensis]
Length = 361
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + P+ LR F ++GR+ D+Y+PRD +T RGF FV++ A DA
Sbjct: 4 ISLKVDNLTYRTSPDTLRRVFEKYGRIGDVYIPRDRFTKASRGFAFVRFYCKNHAEDALD 63
Query: 98 HMDGYLLLGRELTVVFA 114
+DG +L GR+L V A
Sbjct: 64 AVDGVVLDGRKLRVQMA 80
>gi|448878220|gb|AGE46073.1| arginine/serine-rich splicing factor SC26 transcript II [Zea mays]
Length = 129
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DIY+PRD+ TG+PRGF FV+Y +A DA
Sbjct: 19 SLLVLNVSFRTTADDLFPLFDRYGKVLDIYIPRDHRTGDPRGFAFVRYNYEDEAQDAIDG 78
Query: 99 MDGYLLLGRELTVVFAE 115
+DG GR L V FA+
Sbjct: 79 LDGMRFDGRALMVQFAK 95
>gi|194708586|gb|ACF88377.1| unknown [Zea mays]
gi|414590930|tpg|DAA41501.1| TPA: hypothetical protein ZEAMMB73_776046 [Zea mays]
gi|414590931|tpg|DAA41502.1| TPA: hypothetical protein ZEAMMB73_776046 [Zea mays]
Length = 238
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G + DIY+PRD TG+ RGF FV+Y +A A
Sbjct: 18 SLLVLNITFRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 77
Query: 99 MDGYLLLGRELTVVFAE 115
+DG L+ GRE+ V FA+
Sbjct: 78 LDGRLVDGREIMVQFAK 94
>gi|226481931|emb|CAX79231.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
Length = 163
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + +DLR F +FG + DIY+PRD YT E RGF FV+Y +A
Sbjct: 12 DGMVSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPYTFESRGFAFVRYCTDREADC 71
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A MDG+ + GRE+ V A+ R P+
Sbjct: 72 AIRGMDGHKVDGREVRVQRAKYGRPTPN 99
>gi|373854326|ref|ZP_09597124.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391231688|ref|ZP_10267894.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
gi|372472193|gb|EHP32205.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391221349|gb|EIP99769.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
Length = 122
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V N+ ++LR FGQFG + D+Y+ D TG PRGF FV P +A A +
Sbjct: 6 LYVGNMSFKTSEDELRSAFGQFGNVTDVYVAMDKMTGRPRGFAFVTMSTPEEAKIAAEKL 65
Query: 100 DGYLLLGRELTVVFAEENRKKPSE 123
+G L GR LTV N +P E
Sbjct: 66 NGVDLGGRALTV-----NEARPKE 84
>gi|448878314|gb|AGE46120.1| arginine/serine-rich splicing factor SC30 transcript I [Sorghum
bicolor]
Length = 250
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G + DIY+PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG L+ GRE+ V FA+
Sbjct: 77 LDGRLVDGREIMVQFAK 93
>gi|359460000|ref|ZP_09248563.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
Length = 95
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D E+L F ++G +K + LP D TG+ RGFGFV+ A+ A A
Sbjct: 2 SIYVGNLSYDVTEENLSTAFSEYGTVKLVKLPTDRETGKMRGFGFVEMSSDAEEAKAIDE 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
++G +GR LTV N+ +P E RA
Sbjct: 62 LEGAEWMGRTLTV-----NKARPRENRA 84
>gi|226501776|ref|NP_001148421.1| LOC100282036 [Zea mays]
gi|195619182|gb|ACG31421.1| splicing factor, arginine/serine-rich 2 [Zea mays]
Length = 218
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+LV N+ +DL F ++G++ DIY+PRD+ TG+PRGF FV+Y +A DA
Sbjct: 19 SILVLNVSFRTTADDLFPLFDRYGKVLDIYIPRDHRTGDPRGFAFVRYNYEDEARDAIDG 78
Query: 99 MDGYLLLGRELTVVFAE 115
+DG GR L V FA+
Sbjct: 79 LDGXRFDGRALMVQFAK 95
>gi|380791457|gb|AFE67604.1| serine/arginine-rich splicing factor 8, partial [Macaca mulatta]
Length = 86
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL + P+ LR F ++GR+ D+Y+PR+++T PRGF FV++ + DA DA+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREHHTKAPRGFAFVRFHNRRDAEDAED 73
Query: 98 HMDGYLLLGREL 109
MDG L GREL
Sbjct: 74 AMDGAELDGREL 85
>gi|159474538|ref|XP_001695382.1| nuclear cap-binding protein [Chlamydomonas reinhardtii]
gi|158275865|gb|EDP01640.1| nuclear cap-binding protein [Chlamydomonas reinhardtii]
Length = 143
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%)
Query: 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
GG+G + T+L V L L F FG +K++ +P D+ TG RGFGFV+Y +
Sbjct: 8 VGGKGTNPKTTLYVGGLEESVNEATLHAAFLPFGEIKEVNMPIDHATGTHRGFGFVEYEE 67
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAE 115
DAA A +M+ L GR L V +A+
Sbjct: 68 KDDAAAAIDNMNNAELFGRVLKVNYAQ 94
>gi|355745275|gb|EHH49900.1| hypothetical protein EGM_00635 [Macaca fascicularis]
Length = 289
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 47 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 105
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 106 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 139
>gi|395546030|ref|XP_003774897.1| PREDICTED: RNA-binding motif protein, X chromosome [Sarcophilus
harrisii]
Length = 413
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L V L + + L FG++GR+ ++ L +D T + RGF F+ + PADA D
Sbjct: 24 DRPGKLFVGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETSKSRGFAFITFESPADAKD 83
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G LL G+ + V A +
Sbjct: 84 AARDMNGKLLDGKSIKVEQATK 105
>gi|4104336|gb|AAD01997.1| heterogeneous nuclear ribonucleoprotein G [Macropus eugenii]
Length = 394
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L V L + + L FG++GR+ ++ L +D T + RGF F+ + PADA D
Sbjct: 5 DRPGKLFVGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETSKSRGFAFITFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G LL G+ + V A +
Sbjct: 65 AARDMNGKLLDGKSIKVEQATK 86
>gi|300869358|ref|ZP_07113948.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
gi|300332657|emb|CBN59146.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
Length = 106
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL V NL + ED+ F ++G +K ++LP D TG PRGFGFV+ A+ A
Sbjct: 2 SLYVGNLSYQVTQEDIITVFAEYGTVKRVHLPTDRETGRPRGFGFVEMATDAEEEAAITA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKP 121
+DG +GREL V N+ KP
Sbjct: 62 LDGAEWMGRELKV-----NKAKP 79
>gi|148698744|gb|EDL30691.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_a [Mus musculus]
gi|149035668|gb|EDL90349.1| rCG50282, isoform CRA_a [Rattus norvegicus]
Length = 173
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 33 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 91
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 92 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 125
>gi|313216842|emb|CBY38074.1| unnamed protein product [Oikopleura dioica]
Length = 360
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 54/87 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+S+ + + RP++++ F +FG +K+I +P D+ T EPRGF +V + + A +A+
Sbjct: 11 SSICIHPIDACIRPDEIKAEFKEFGEIKEIRIPVDFETREPRGFAYVDFEEVESAIEARD 70
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEM 124
++G +L R++ V ++ +K PSEM
Sbjct: 71 IINGRILFDRKVQVYYSNGTKKLPSEM 97
>gi|414887662|tpg|DAA63676.1| TPA: hypothetical protein ZEAMMB73_707044 [Zea mays]
Length = 207
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G + DIY+PRD TG+ RGF FV+Y +A A
Sbjct: 18 SLLVLNITFRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVER 77
Query: 99 MDGYLLLGRELTVVFAE 115
+DG L+ GRE+ V FA+
Sbjct: 78 LDGRLVDGREIMVQFAK 94
>gi|256092428|ref|XP_002581939.1| serine/arginine rich splicing factor [Schistosoma mansoni]
gi|226481905|emb|CAX79218.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
gi|353230937|emb|CCD77354.1| putative serine/arginine rich splicing factor [Schistosoma mansoni]
Length = 102
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + +DLR F +FG + DIY+PRD YT E RGF FV+Y +A
Sbjct: 12 DGMVSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPYTFESRGFAFVRYCTDREADC 71
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A MDG+ + GRE+ V A+ R P+
Sbjct: 72 AIRGMDGHKVDGREVRVQRAKYGRPTPN 99
>gi|355749288|gb|EHH53687.1| hypothetical protein EGM_14374, partial [Macaca fascicularis]
Length = 148
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Query: 36 LPTS----LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
LP S L +RN ++ R +DL FG++G + D+Y+P D+YT PRG +VQ D D
Sbjct: 2 LPVSPKVPLFIRNGANNSRFKDLWHEFGRYGPIVDVYVPLDFYTHCPRGVAYVQLEDVRD 61
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A DA +++D + G ++ + + P++M+A+E
Sbjct: 62 AEDALHNLDRKWICGCQMRI------GRPPNQMKAKE 92
>gi|256092432|ref|XP_002581941.1| serine/arginine rich splicing factor [Schistosoma mansoni]
gi|353230939|emb|CCD77356.1| putative serine/arginine rich splicing factor [Schistosoma mansoni]
Length = 102
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + +DLR F +FG + DIY+PRD YT E RGF FV+Y +A
Sbjct: 12 DGMVSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPYTFESRGFAFVRYCTDREADC 71
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A MDG+ + GRE+ V A+ R P+
Sbjct: 72 AIRGMDGHKVDGREVRVQRAKYGRPTPN 99
>gi|148698746|gb|EDL30693.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_c [Mus musculus]
Length = 167
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 27 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 85
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 86 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 119
>gi|428210291|ref|YP_007094644.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428012212|gb|AFY90775.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 101
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL ++ PEDL F Q+G +K + LP D TG RGF FV+ A+ A
Sbjct: 2 SIYVGNLSYEVTPEDLSAAFAQYGSVKRVQLPTDRETGRVRGFAFVEMDTDAEETTAIDA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRR 138
+DG +GR + V N+ KP E R S DGRR
Sbjct: 62 LDGAEWMGRNMKV-----NKAKPREDRG------SSDGRR 90
>gi|149035670|gb|EDL90351.1| rCG50282, isoform CRA_c [Rattus norvegicus]
Length = 175
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
>gi|444727801|gb|ELW68279.1| Serine/arginine-rich splicing factor 2 [Tupaia chinensis]
Length = 218
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDG 101
MDG
Sbjct: 74 AMDG 77
>gi|334321532|ref|XP_003340124.1| PREDICTED: ELAV-like protein 4 isoform 2 [Monodelphis domestica]
Length = 347
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 7 SYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD 66
S + + P GR PSP G D T+L+V L + E+ R FG G ++
Sbjct: 11 SNTTNGPSSNGRN--CPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIES 67
Query: 67 IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 265 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 324
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 325 LNGYRLGDRVLQVSFKTNKTHK 346
>gi|313228380|emb|CBY23531.1| unnamed protein product [Oikopleura dioica]
gi|313241505|emb|CBY33754.1| unnamed protein product [Oikopleura dioica]
Length = 201
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + E LR F +FG + D+Y+P+D + GE RGF FV++ D DA DA
Sbjct: 13 TSLKIDNLSYRTDAESLRRTFSKFGEIGDVYIPKDKH-GESRGFAFVRFHDKRDAGDAID 71
Query: 98 HMDGYLLLGRELTVVFAEENR 118
+ G L GRE+ V +A R
Sbjct: 72 DLAGKDLDGREIRVDYARHER 92
>gi|148698745|gb|EDL30692.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_b [Mus musculus]
gi|149035669|gb|EDL90350.1| rCG50282, isoform CRA_b [Rattus norvegicus]
Length = 170
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
>gi|119609848|gb|EAW89442.1| splicing factor, arginine/serine-rich 2, isoform CRA_c [Homo
sapiens]
Length = 163
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDG 101
MDG
Sbjct: 74 AMDG 77
>gi|313242082|emb|CBY34259.1| unnamed protein product [Oikopleura dioica]
Length = 186
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + E LR F ++G + D+Y+P+D Y GE RGF FV++ D DA DA
Sbjct: 13 TSLKIDNLSYRTDSESLRRKFSKYGEIGDVYIPKDKY-GESRGFAFVRFHDKRDAGDAID 71
Query: 98 HMDGYLLLGRELTVVFAEENR 118
+DG + GRE+ V +A R
Sbjct: 72 QLDGRDIDGREIRVDYARHER 92
>gi|313227248|emb|CBY22395.1| unnamed protein product [Oikopleura dioica]
Length = 186
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + E LR F ++G + D+Y+P+D Y GE RGF FV++ D DA DA
Sbjct: 13 TSLKIDNLSYRTDSESLRRKFSKYGEIGDVYIPKDKY-GESRGFAFVRFHDKRDAGDAID 71
Query: 98 HMDGYLLLGRELTVVFAEENR 118
+DG + GRE+ V +A R
Sbjct: 72 QLDGRDIDGREIRVDYARHER 92
>gi|224073347|ref|XP_002304081.1| predicted protein [Populus trichocarpa]
gi|222841513|gb|EEE79060.1| predicted protein [Populus trichocarpa]
Length = 142
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>gi|391348501|ref|XP_003748485.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
G-like [Metaseiulus occidentalis]
Length = 281
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 18 RRYRSPSPRGHYGGR-GRDLP--------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIY 68
RY SP R +GGR G +P ++ V NL D + DL F FGR+ I+
Sbjct: 171 ERYVSPGLRDGFGGRRGESMPLTRQNRDEATVRVTNLSEDVKDSDLTELFKPFGRITRIF 230
Query: 69 LPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----LLLGREL 109
L +D T P+GF FV Y ++A +A H+ GY L+L E+
Sbjct: 231 LAKDKITNVPKGFAFVSYERISEAQNAINHVHGYGYDNLILSVEM 275
>gi|334321530|ref|XP_001373647.2| PREDICTED: ELAV-like protein 4 isoform 1 [Monodelphis domestica]
Length = 366
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 7 SYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD 66
S + + P GR PSP G D T+L+V L + E+ R FG G ++
Sbjct: 18 SNTTNGPSSNGRN--CPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIES 74
Query: 67 IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
D+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 365
>gi|344248615|gb|EGW04719.1| ELAV-like protein 2 [Cricetulus griseus]
Length = 347
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G+ D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GKTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 10 PSPPRDYGRRYRSPSPR---GHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQ 60
P P +R+ SP G G ++P + V NL D L FG
Sbjct: 227 PGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGP 286
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 339
>gi|224088597|ref|XP_002308490.1| predicted protein [Populus trichocarpa]
gi|222854466|gb|EEE92013.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 33/183 (18%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L V +L R DL F ++GR++D+ + RDY FV++ DP DA DA++
Sbjct: 11 TRLYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDY--------AFVEFSDPRDADDARH 62
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS------PHYAR 151
++DG G + V FA + R SR Y GR PP R H+AR
Sbjct: 63 YLDGKEFDGSRIIVEFA----------KGVPRGSREYLGRGPPPGSGRCFNCGIDGHWAR 112
Query: 152 GYSRSPDYYSPPPR---RGRDSRSI--SPRYRRYRERSYSRSPYGSRSYSPSRSRSRSLD 206
++ D+ + R RG R+ SP+ + R +SYSRSP RS SP R RSRS
Sbjct: 113 D-CKAGDWKNKCYRCGERGHIERNCKNSPK-KLTRGKSYSRSP--GRSRSPHRGRSRSPS 168
Query: 207 YSR 209
YSR
Sbjct: 169 YSR 171
>gi|255084425|ref|XP_002508787.1| predicted protein [Micromonas sp. RCC299]
gi|226524064|gb|ACO70045.1| predicted protein [Micromonas sp. RCC299]
Length = 248
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL + NL + E L+ FG+ G + D+Y+PRDYYT RGF FV++ D A DA
Sbjct: 32 SLKLDNLDYSVTLEQLKELFGKHGEIGDVYMPRDYYTKRSRGFAFVRFKDRTAAEDAIKE 91
Query: 99 MDGYLLLGRELTVVFAEENR 118
D L GR + FAE+ R
Sbjct: 92 FDQKELNGRPIACRFAEKPR 111
>gi|448878419|gb|AGE46172.1| arginine/serine-rich splicing factor SC37 transcript III
[Physcomitrella patens subsp. patens]
Length = 257
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTSADDLYPLFDRYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAIER 76
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRAR------ERFSRSYDGRRSPPR 142
+DG + GR + V FA+ RK R R +R SRS RSP R
Sbjct: 77 LDGREVDGRHIVVQFAKYGRKDEPIQRGRITDTGMKRVSRS--ASRSPKR 124
>gi|302829787|ref|XP_002946460.1| hypothetical protein VOLCADRAFT_79186 [Volvox carteri f.
nagariensis]
gi|300268206|gb|EFJ52387.1| hypothetical protein VOLCADRAFT_79186 [Volvox carteri f.
nagariensis]
Length = 186
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%)
Query: 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
GG+G + T+L V L L F FG +K++ +P D+ TG RGFGFV+Y +
Sbjct: 9 VGGKGTNPKTTLYVGGLEETVNEATLHAAFLPFGEIKEVNIPLDHATGTHRGFGFVEYEE 68
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
DAA A +M L GR L V +A+ + K
Sbjct: 69 KEDAAAAIDNMHNAELFGRVLKVNYAQPMKIK 100
>gi|241627928|ref|XP_002408123.1| splicing factor SC35, putative [Ixodes scapularis]
gi|215501127|gb|EEC10621.1| splicing factor SC35, putative [Ixodes scapularis]
Length = 105
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 60 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 119
++G + D+Y+P DYY PRGF +VQ+ D DA DA Y +D GREL + FA+ +RK
Sbjct: 1 KYGPITDVYIPVDYYARRPRGFAYVQFEDLRDAEDAMYSLDWTRFYGRELEIEFAQGDRK 60
Query: 120 KPSEMRAR 127
P R+R
Sbjct: 61 TPRRSRSR 68
>gi|224099521|ref|XP_002334472.1| predicted protein [Populus trichocarpa]
gi|222872360|gb|EEF09491.1| predicted protein [Populus trichocarpa]
Length = 101
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>gi|183221265|ref|YP_001839261.1| RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|189911356|ref|YP_001962911.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167776032|gb|ABZ94333.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167779687|gb|ABZ97985.1| RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 89
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
+ + V NL+ + E++R F +G ++D+ + D TG RGF F+ Y P++A +A
Sbjct: 2 VSNKIYVGNLKFSLKEENIRQIFSVYGAIQDLKMIHDRETGNFRGFAFITYASPSEAEEA 61
Query: 96 KYHMDGYLLLGRELTVVFAEENRKK 120
M+G + GR L V FAE+ RK+
Sbjct: 62 VAQMNGQPIDGRNLKVTFAEDKRKE 86
>gi|354491615|ref|XP_003507950.1| PREDICTED: ELAV-like protein 2 isoform 3 [Cricetulus griseus]
Length = 356
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G+ D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 42 GKTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 101
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 102 DAEKAINTLNGLRLQTKTIKVSYA 125
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 237 PGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 296
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 297 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 348
>gi|354491613|ref|XP_003507949.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cricetulus griseus]
Length = 360
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G+ D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GKTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 278 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 338 LNGYRLGDRVLQVSF 352
>gi|294868078|ref|XP_002765370.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
gi|239865389|gb|EEQ98087.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
Length = 204
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V + R +DLR F +FG + D+++P D YTG RGFGFV++ + DA DA
Sbjct: 11 SIKVDGIDERVRKDDLREAFSKFGEIGDVFIPLDRYTGVSRGFGFVRFYERRDAEDAIRD 70
Query: 99 MDGYLLLGRELTVVFAEENRK 119
MD G +TV A N++
Sbjct: 71 MDNKEFQGCRITVAAAMYNKE 91
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G+ D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GKTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 337 LNGYRLGDRVLQVSF 351
>gi|126334002|ref|XP_001364932.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Monodelphis
domestica]
Length = 347
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 10 PSPPRDYGRRYRSPSPR---GHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQ 60
P P +R+ SP G G ++P + V NL D L FG
Sbjct: 227 PGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGP 286
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 339
>gi|119627248|gb|EAX06843.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_c [Homo sapiens]
Length = 356
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 33 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 91
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 92 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 125
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 237 PGPLHHQAQRFRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF 296
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 297 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 348
>gi|62733241|gb|AAX95358.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 384
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
EPRGF FV++ +DA+ A+YHM+ +L GRE++V FA + RK+P EMR
Sbjct: 1 EPRGFAFVEFAHSSDASKARYHMNRKMLSGREISVAFAVQTRKRPEEMR 49
>gi|320168309|gb|EFW45208.1| RNA binding domain-containing protein [Capsaspora owczarzaki ATCC
30864]
Length = 1179
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + C +DL F +FG+L ++++P D T +P GF FV ++ P A A +
Sbjct: 609 LFVRNLPYTCTEDDLIALFSKFGQLAEVHMPIDKETKKPTGFAFVLFLMPEHAVTAFRAL 668
Query: 100 DGYLLLGRELTVVFAEEN 117
DG GR L ++ A+ N
Sbjct: 669 DGSTFQGRLLHLLPAKAN 686
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L+VRN+ + ++L F FG+LK + LP+ G+ RGF F++++ +A A
Sbjct: 1063 TKLIVRNVPFEATRKELFDVFSPFGQLKSVRLPQK-PGGQHRGFAFIEFLTKEEAKKAFE 1121
Query: 98 HMDGYLLLGRELTVVFAEEN 117
+ GR L + +A E+
Sbjct: 1122 SLKATHFYGRHLVLEWAAED 1141
>gi|15020254|gb|AAK74152.1| ELAV-like neuronal protein-3 [Mus musculus]
Length = 348
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 10 PSPPRDYGRRYRS----PSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFG 59
P P +R+RS + G G ++P + V NL D L FG
Sbjct: 227 PGPLAQQAQRFRSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFG 286
Query: 60 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 PFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 340
>gi|348554579|ref|XP_003463103.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cavia porcellus]
Length = 347
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 23 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 265 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 324
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 325 LNGYRLGDRVLQVSF 339
>gi|21752539|dbj|BAC04206.1| unnamed protein product [Homo sapiens]
gi|119609852|gb|EAW89446.1| splicing factor, arginine/serine-rich 2, isoform CRA_f [Homo
sapiens]
Length = 186
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYL 103
MDG +
Sbjct: 74 AMDGAV 79
>gi|2801552|gb|AAC40080.1| RNA binding protein Elavl4 [Mus musculus]
Length = 346
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 23 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 227 PGPLHHQAQRFRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF 286
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 338
>gi|291383147|ref|XP_002708097.1| PREDICTED: ELAV-like 2-like isoform 2 [Oryctolagus cuniculus]
Length = 376
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 36 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 91
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 92 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 144
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 10 PSPPRDYGRRYRSPSPR---GHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQ 60
P P +R+ SP G G ++P + V NL D L FG
Sbjct: 256 PGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGP 315
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 316 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 368
>gi|226481921|emb|CAX79226.1| Splicing factor, arginine/serine-rich 2 [Schistosoma japonicum]
Length = 151
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D SL V NL + +DLR F +FG + DIY+PRD T E RGF FV+Y +A
Sbjct: 12 DGMVSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPCTFESRGFAFVRYCTDREADC 71
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A MDG+ + GRE+ V A+ R P+
Sbjct: 72 AIRGMDGHKVDGREVRVQRAKYGRPTPN 99
>gi|15020256|gb|AAK74153.1| ELAV-like neuronal protein-2 [Mus musculus]
Length = 347
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 10 PSPPRDYGRRYRSPSPR---GHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQ 60
P P +R+R SP G G ++P + V NL D L FG
Sbjct: 227 PGPLAQQAQRFRRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGP 286
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 339
>gi|46592826|ref|NP_997569.1| ELAV-like protein 2 isoform 3 [Mus musculus]
gi|49114392|gb|AAH46598.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 347
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 10 PSPPRDYGRRYRSPSPR---GHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQ 60
P P +R+ SP G G ++P + V NL D L FG
Sbjct: 227 PGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGP 286
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 339
>gi|195995613|ref|XP_002107675.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190588451|gb|EDV28473.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 330
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L + L + LR F Q+GRL++ ++ D +G RGFGFV + DP DA DA
Sbjct: 14 TRLFIGGLSSEVDNTKLREAFQQYGRLREAFVTVDRMSGRSRGFGFVSFYDPEDAQDAID 73
Query: 98 HMDGYLLLGRELTVVFA 114
M G L GR + V A
Sbjct: 74 QMTGKELCGRSIRVSHA 90
>gi|254281259|ref|NP_001156869.1| ELAV-like protein 4 isoform c [Mus musculus]
Length = 356
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 33 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 91
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 92 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 125
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 237 PGPLHHQAQRFRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF 296
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 297 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 348
>gi|395514484|ref|XP_003761447.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Sarcophilus
harrisii]
Length = 347
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 10 PSPPRDYGRRYRSPSPR---GHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQ 60
P P +R+ SP G G ++P + V NL D L FG
Sbjct: 227 PGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGP 286
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 339
>gi|119578988|gb|EAW58584.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_c [Homo sapiens]
Length = 360
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 21 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 76
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 77 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 129
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 241 PGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 300
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 301 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 352
>gi|221316771|ref|NP_001138248.1| ELAV-like protein 4 isoform 4 [Homo sapiens]
gi|114556460|ref|XP_001135439.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 8 [Pan troglodytes]
gi|332219809|ref|XP_003259050.1| PREDICTED: ELAV-like protein 4 isoform 5 [Nomascus leucogenys]
gi|395855043|ref|XP_003799981.1| PREDICTED: ELAV-like protein 4 isoform 4 [Otolemur garnettii]
gi|397518910|ref|XP_003829618.1| PREDICTED: ELAV-like protein 4 isoform 5 [Pan paniscus]
gi|402854511|ref|XP_003891911.1| PREDICTED: ELAV-like protein 4 isoform 5 [Papio anubis]
gi|426329581|ref|XP_004025817.1| PREDICTED: ELAV-like protein 4 isoform 5 [Gorilla gorilla gorilla]
gi|14280323|gb|AAK57538.1| HUD3 [Homo sapiens]
Length = 366
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|126325323|ref|XP_001367196.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Monodelphis domestica]
Length = 388
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L V L + + L FG++GR+ ++ L +D T + RGF F+ + PADA D
Sbjct: 5 DRPGKLFVGGLNIETNEKALEAVFGKYGRIVEVLLMKDRETRKSRGFAFITFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G LL G+ + V A +
Sbjct: 65 AARDMNGKLLDGKSIKVEQATK 86
>gi|179537|gb|AAA58396.1| brain protein [Homo sapiens]
gi|14280329|gb|AAK57541.1| HUDPRO1 [Homo sapiens]
gi|119627247|gb|EAX06842.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_b [Homo sapiens]
Length = 380
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 263 PVPPSACSPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>gi|390465924|ref|XP_002750851.2| PREDICTED: ELAV-like protein 4 isoform 1 [Callithrix jacchus]
Length = 366
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|357490719|ref|XP_003615647.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
gi|355516982|gb|AES98605.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
Length = 140
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TGE RGF FV+Y +A+ A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+TV FA+
Sbjct: 77 LDGRMVDGREITVQFAK 93
>gi|905387|gb|AAA70417.1| Hel-N2 [Homo sapiens]
Length = 346
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 227 PGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 286
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSLNGYRLGDRVLQVSF 338
>gi|403343546|gb|EJY71107.1| RNA binding protein, putative [Oxytricha trifallax]
Length = 388
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL V NL + DLR F ++G ++ + D T E RGF FV Y +P DA D+
Sbjct: 108 SSLYVANLSKRVKDSDLRDLFERYGTIQKCTVVVDPITSESRGFAFVVYDNPQDAEDSLS 167
Query: 98 HMDGYLLLGRELTV 111
++GY LLG+E+ V
Sbjct: 168 KLNGYDLLGKEIRV 181
>gi|395730528|ref|XP_003775743.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 366
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|221316767|ref|NP_001138246.1| ELAV-like protein 4 isoform 2 [Homo sapiens]
gi|384475927|ref|NP_001245109.1| ELAV-like protein 4 [Macaca mulatta]
gi|114556464|ref|XP_001135692.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 11 [Pan troglodytes]
gi|332219803|ref|XP_003259047.1| PREDICTED: ELAV-like protein 4 isoform 2 [Nomascus leucogenys]
gi|395855037|ref|XP_003799978.1| PREDICTED: ELAV-like protein 4 isoform 1 [Otolemur garnettii]
gi|397518904|ref|XP_003829615.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pan paniscus]
gi|402854505|ref|XP_003891908.1| PREDICTED: ELAV-like protein 4 isoform 2 [Papio anubis]
gi|426329575|ref|XP_004025814.1| PREDICTED: ELAV-like protein 4 isoform 2 [Gorilla gorilla gorilla]
gi|14280327|gb|AAK57540.1| HUD1 [Homo sapiens]
gi|380810346|gb|AFE77048.1| ELAV-like protein 4 isoform 2 [Macaca mulatta]
Length = 366
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|432103090|gb|ELK30412.1| ELAV-like protein 2 [Myotis davidii]
Length = 416
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 64 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 119
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 120 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 172
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 334 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 393
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 394 LNGYRLGDRVLQVSFKTNKTHK 415
>gi|344241813|gb|EGV97916.1| ELAV-like protein 4 [Cricetulus griseus]
gi|431896875|gb|ELK06139.1| ELAV-like protein 4, partial [Pteropus alecto]
Length = 350
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 27 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 85
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 86 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 119
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 231 PGPLHHQAQRFRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF 290
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 291 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 342
>gi|359067954|ref|XP_002707879.2| PREDICTED: LOW QUALITY PROTEIN: eLAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)-like [Bos
taurus]
Length = 346
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 227 PGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 286
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L F
Sbjct: 287 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQXSF 338
>gi|126334000|ref|XP_001364864.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Monodelphis
domestica]
Length = 360
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 278 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 338 LNGYRLGDRVLQVSF 352
>gi|297664975|ref|XP_002810888.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pongo abelii]
Length = 369
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 33 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 91
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 92 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 125
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 260 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 319
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 320 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 361
>gi|154418572|ref|XP_001582304.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121916538|gb|EAY21318.1| hypothetical protein TVAG_166930 [Trichomonas vaginalis G3]
Length = 202
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 26/152 (17%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L VR + H + E L F ++G +KD+Y+P+D+ +G R +V+Y D +A+ A
Sbjct: 3 TLFVRPINHVSK-EFLLSRFSEYGEVKDLYIPKDFKSGRRRTIAYVKYDDKVEASKAIEG 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEM---RARERFSRSYDGRRSPPRYS--------RSP 147
++G + G+E+ V ++ E +K P EM +A+ + R + + PP+Y+ +
Sbjct: 62 LNGKEINGKEIYVSWSSEKQKTPDEMEAAKAQRQLERQENPK--PPKYTPEEHELYLKKK 119
Query: 148 HYARG-----YSRSPDY-------YSPPPRRG 167
H+A G Y + DY Y+P +RG
Sbjct: 120 HFAEGEFHEKYFTAVDYPLGVGEEYTPVFQRG 151
>gi|384245985|gb|EIE19477.1| hypothetical protein COCSUDRAFT_67908 [Coccomyxa subellipsoidea
C-169]
Length = 164
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%)
Query: 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
GG+G + T+L V L + L F FG +KD+ +P D TG+ RGFGFV+Y +
Sbjct: 8 VGGKGTNKKTTLYVGGLEENVNEAILHSAFIPFGDIKDVNIPLDNTTGKHRGFGFVEYEN 67
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAE 115
D+ADA +M L GR L +A+
Sbjct: 68 AEDSADAIDNMHNAELYGRVLRCNYAQ 94
>gi|348587078|ref|XP_003479295.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cavia porcellus]
Length = 347
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTTNGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 10 PSPPRDYGRRYRSPSPR---GHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQ 60
P P +R+ SP G G ++P + V NL D L FG
Sbjct: 227 PGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGP 286
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 339
>gi|296484904|tpg|DAA27019.1| TPA: ELAV-like 2-like [Bos taurus]
Length = 620
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 306 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 365
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 366 DAEKAINTLNGLRLQTKTIKVSYA 389
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 538 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 597
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L F K
Sbjct: 598 LNGYRLGDRVLQXSFKTNKTHK 619
>gi|221316773|ref|NP_001138249.1| ELAV-like protein 4 isoform 5 [Homo sapiens]
gi|114556458|ref|XP_001135525.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 9 [Pan troglodytes]
gi|332219805|ref|XP_003259048.1| PREDICTED: ELAV-like protein 4 isoform 3 [Nomascus leucogenys]
gi|397518908|ref|XP_003829617.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pan paniscus]
gi|402854507|ref|XP_003891909.1| PREDICTED: ELAV-like protein 4 isoform 3 [Papio anubis]
gi|426329577|ref|XP_004025815.1| PREDICTED: ELAV-like protein 4 isoform 3 [Gorilla gorilla gorilla]
gi|119627250|gb|EAX06845.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_e [Homo sapiens]
gi|221041752|dbj|BAH12553.1| unnamed protein product [Homo sapiens]
Length = 369
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 33 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 91
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 92 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 125
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 260 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 319
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 320 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 361
>gi|119627249|gb|EAX06844.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_d [Homo sapiens]
Length = 365
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 29 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 87
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 88 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 121
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 256 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 315
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 316 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 357
>gi|355557990|gb|EHH14770.1| hypothetical protein EGK_00744 [Macaca mulatta]
Length = 385
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 268 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 327
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 328 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377
>gi|440909067|gb|ELR59018.1| ELAV-like protein 2 [Bos grunniens mutus]
Length = 388
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 35 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 90
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 91 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 143
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 306 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 366 LNGYRLGDRVLQVSF 380
>gi|395855039|ref|XP_003799979.1| PREDICTED: ELAV-like protein 4 isoform 2 [Otolemur garnettii]
Length = 383
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 47 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 105
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 106 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 139
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 274 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 333
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 334 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 375
>gi|348587076|ref|XP_003479294.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cavia porcellus]
Length = 360
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTTNGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 278 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 338 LNGYRLGDRVLQVSF 352
>gi|348522243|ref|XP_003448635.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Oreochromis niloticus]
Length = 387
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ FG FGR+ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 98 VFVGDLSPEITTEDVKAAFGPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQHM 157
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSR--SYDGRRSPPRYSRSPHYARGYS 154
G L GR++ +A RK P+ E S+ S+D + S Y G S
Sbjct: 158 GGQWLGGRQIRTNWA--TRKPPAPKTTHENNSKHLSFDEVVNQSSPSNCTVYCGGVS 212
>gi|221316765|ref|NP_068771.2| ELAV-like protein 4 isoform 1 [Homo sapiens]
gi|114556466|ref|XP_001134946.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 2 [Pan troglodytes]
gi|332219811|ref|XP_003259051.1| PREDICTED: ELAV-like protein 4 isoform 6 [Nomascus leucogenys]
gi|395855045|ref|XP_003799982.1| PREDICTED: ELAV-like protein 4 isoform 5 [Otolemur garnettii]
gi|397518912|ref|XP_003829619.1| PREDICTED: ELAV-like protein 4 isoform 6 [Pan paniscus]
gi|402854513|ref|XP_003891912.1| PREDICTED: ELAV-like protein 4 isoform 6 [Papio anubis]
gi|426329583|ref|XP_004025818.1| PREDICTED: ELAV-like protein 4 isoform 6 [Gorilla gorilla gorilla]
gi|223590202|sp|P26378.2|ELAV4_HUMAN RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|380810344|gb|AFE77047.1| ELAV-like protein 4 isoform 1 [Macaca mulatta]
Length = 380
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>gi|283945529|ref|NP_001164666.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|283945537|ref|NP_001164668.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|386781798|ref|NP_001247929.1| ELAV-like protein 2 [Macaca mulatta]
gi|73971067|ref|XP_865045.1| PREDICTED: ELAV-like protein 2 isoform 2 [Canis lupus familiaris]
gi|296190040|ref|XP_002743027.1| PREDICTED: ELAV-like protein 2 isoform 3 [Callithrix jacchus]
gi|296190042|ref|XP_002743028.1| PREDICTED: ELAV-like protein 2 isoform 4 [Callithrix jacchus]
gi|311245697|ref|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Sus scrofa]
gi|332229735|ref|XP_003264043.1| PREDICTED: ELAV-like protein 2 isoform 1 [Nomascus leucogenys]
gi|332229739|ref|XP_003264045.1| PREDICTED: ELAV-like protein 2 isoform 3 [Nomascus leucogenys]
gi|332831658|ref|XP_003312071.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan troglodytes]
gi|332831662|ref|XP_003312072.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan troglodytes]
gi|338719470|ref|XP_003364010.1| PREDICTED: ELAV-like protein 2 isoform 2 [Equus caballus]
gi|344271095|ref|XP_003407377.1| PREDICTED: ELAV-like protein 2-like [Loxodonta africana]
gi|402897263|ref|XP_003911688.1| PREDICTED: ELAV-like protein 2 isoform 2 [Papio anubis]
gi|402897265|ref|XP_003911689.1| PREDICTED: ELAV-like protein 2 isoform 3 [Papio anubis]
gi|402897267|ref|XP_003911690.1| PREDICTED: ELAV-like protein 2 isoform 4 [Papio anubis]
gi|403272640|ref|XP_003928160.1| PREDICTED: ELAV-like protein 2 isoform 2 [Saimiri boliviensis
boliviensis]
gi|403272642|ref|XP_003928161.1| PREDICTED: ELAV-like protein 2 isoform 3 [Saimiri boliviensis
boliviensis]
gi|410042502|ref|XP_003951453.1| PREDICTED: ELAV-like protein 2 [Pan troglodytes]
gi|410978370|ref|XP_003995566.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Felis catus]
gi|426220515|ref|XP_004004460.1| PREDICTED: ELAV-like protein 2 isoform 2 [Ovis aries]
gi|426220517|ref|XP_004004461.1| PREDICTED: ELAV-like protein 2 isoform 3 [Ovis aries]
gi|426361463|ref|XP_004047930.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gorilla gorilla gorilla]
gi|426361465|ref|XP_004047931.1| PREDICTED: ELAV-like protein 2 isoform 3 [Gorilla gorilla gorilla]
gi|426361467|ref|XP_004047932.1| PREDICTED: ELAV-like protein 2 isoform 4 [Gorilla gorilla gorilla]
gi|441622584|ref|XP_004088846.1| PREDICTED: ELAV-like protein 2 [Nomascus leucogenys]
gi|21265137|gb|AAH30692.1| ELAVL2 protein [Homo sapiens]
gi|119578985|gb|EAW58581.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|119578986|gb|EAW58582.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|123981428|gb|ABM82543.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|123996267|gb|ABM85735.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|157928304|gb|ABW03448.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|384945702|gb|AFI36456.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|384945704|gb|AFI36457.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|387541444|gb|AFJ71349.1| ELAV-like protein 2 isoform b [Macaca mulatta]
Length = 346
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 227 PGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 286
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 338
>gi|302340505|ref|YP_003805711.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
gi|301637690|gb|ADK83117.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
Length = 88
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
+ + V NL + R E L+ FGQ+G++ + + D YTG+ +GFGFV+ ++ DAA+A
Sbjct: 1 MAKKIYVGNLNYSTREESLQDLFGQYGQVNSVNIITDRYTGQSKGFGFVE-MEEMDAAEA 59
Query: 96 KY-HMDGYLLLGRELTVVFAEENRKKP 121
+DG L GREL V A+E ++P
Sbjct: 60 AISALDGTSLDGRELRVNEAKERERRP 86
>gi|297664981|ref|XP_002810891.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pongo abelii]
Length = 366
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|149693653|ref|XP_001492549.1| PREDICTED: ELAV-like protein 4 isoform 3 [Equus caballus]
Length = 366
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|297664977|ref|XP_002810889.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pongo abelii]
Length = 380
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>gi|281347138|gb|EFB22722.1| hypothetical protein PANDA_010481 [Ailuropoda melanoleuca]
Length = 377
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 27 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 85
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 86 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 119
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 260 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 319
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 320 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 376
>gi|207080284|ref|NP_001128867.1| DKFZP459N111 protein [Pongo abelii]
gi|390458025|ref|XP_003732040.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897269|ref|XP_003911691.1| PREDICTED: ELAV-like protein 2 isoform 5 [Papio anubis]
gi|403272644|ref|XP_003928162.1| PREDICTED: ELAV-like protein 2 isoform 4 [Saimiri boliviensis
boliviensis]
gi|426361469|ref|XP_004047933.1| PREDICTED: ELAV-like protein 2 isoform 5 [Gorilla gorilla gorilla]
gi|55731642|emb|CAH92527.1| hypothetical protein [Pongo abelii]
Length = 389
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 36 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 91
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 92 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 144
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 307 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 367 LNGYRLGDRVLQVSF 381
>gi|23271926|gb|AAH36071.1| ELAVL4 protein [Homo sapiens]
Length = 366
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAITSLNGYRLGDRVLQVSF 358
>gi|410978372|ref|XP_003995567.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Felis catus]
Length = 360
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 278 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 338 LNGYRLGDRVLQVSF 352
>gi|390465920|ref|XP_003733490.1| PREDICTED: ELAV-like protein 4 isoform 3 [Callithrix jacchus]
gi|403258119|ref|XP_003921626.1| PREDICTED: ELAV-like protein 4 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|281349018|gb|EFB24602.1| hypothetical protein PANDA_005072 [Ailuropoda melanoleuca]
gi|351703220|gb|EHB06139.1| ELAV-like protein 2 [Heterocephalus glaber]
gi|355567720|gb|EHH24061.1| Hu-antigen B [Macaca mulatta]
gi|355753294|gb|EHH57340.1| Hu-antigen B [Macaca fascicularis]
gi|431914785|gb|ELK15810.1| ELAV-like protein 2 [Pteropus alecto]
Length = 387
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 35 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 90
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 91 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 143
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 305 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 364
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 365 LNGYRLGDRVLQVSF 379
>gi|6754264|ref|NP_034616.1| ELAV-like protein 2 isoform 2 [Mus musculus]
gi|13124206|sp|Q60899.1|ELAV2_MOUSE RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Mel-N1
gi|1144004|gb|AAC52644.1| nervous system-specific RNA binding protein Mel-N1 [Mus musculus]
gi|15020258|gb|AAK74154.1| ELAV-like neuronal protein-1 [Mus musculus]
gi|148699000|gb|EDL30947.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 360
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 278 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 338 LNGYRLGDRVLQVSF 352
>gi|71051886|gb|AAH99348.1| ElrD protein, partial [Xenopus laevis]
Length = 360
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 24 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 82
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 83 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 116
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 251 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 310
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
D+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 311 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 359
>gi|390465926|ref|XP_003733492.1| PREDICTED: ELAV-like protein 4 isoform 5 [Callithrix jacchus]
gi|403258123|ref|XP_003921628.1| PREDICTED: ELAV-like protein 4 isoform 4 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>gi|114556468|ref|XP_001135779.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 12 [Pan troglodytes]
gi|332219801|ref|XP_003259046.1| PREDICTED: ELAV-like protein 4 isoform 1 [Nomascus leucogenys]
gi|395855041|ref|XP_003799980.1| PREDICTED: ELAV-like protein 4 isoform 3 [Otolemur garnettii]
gi|397518902|ref|XP_003829614.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pan paniscus]
gi|402854503|ref|XP_003891907.1| PREDICTED: ELAV-like protein 4 isoform 1 [Papio anubis]
gi|426329573|ref|XP_004025813.1| PREDICTED: ELAV-like protein 4 isoform 1 [Gorilla gorilla gorilla]
gi|221042444|dbj|BAH12899.1| unnamed protein product [Homo sapiens]
gi|261860582|dbj|BAI46813.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 4
[synthetic construct]
Length = 371
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 322 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 363
>gi|341895771|gb|EGT51706.1| hypothetical protein CAEBREN_26166 [Caenorhabditis brenneri]
gi|341900371|gb|EGT56306.1| hypothetical protein CAEBREN_17888 [Caenorhabditis brenneri]
Length = 200
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + P DLR F ++G + D+++PRD Y+ + +GFGFV++ + DA A
Sbjct: 18 TSLKIDNLSYQTTPNDLRRVFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHAMD 77
Query: 98 HMDGYLLLGRELTVVFAEENR 118
DG + GREL V A+ +R
Sbjct: 78 RTDGKNVDGRELRVTLAKYDR 98
>gi|238011430|gb|ACR36750.1| unknown [Zea mays]
gi|414590933|tpg|DAA41504.1| TPA: hypothetical protein ZEAMMB73_776046 [Zea mays]
gi|414590934|tpg|DAA41505.1| TPA: hypothetical protein ZEAMMB73_776046 [Zea mays]
Length = 190
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G + DIY+PRD TG+ RGF FV+Y +A A
Sbjct: 18 SLLVLNITFRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 77
Query: 99 MDGYLLLGRELTVVFAE 115
+DG L+ GRE+ V FA+
Sbjct: 78 LDGRLVDGREIMVQFAK 94
>gi|149693651|ref|XP_001492503.1| PREDICTED: ELAV-like protein 4 isoform 1 [Equus caballus]
Length = 366
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|348041233|ref|NP_775431.2| ELAV-like protein 2 [Rattus norvegicus]
gi|149044491|gb|EDL97750.1| rCG53485, isoform CRA_b [Rattus norvegicus]
Length = 388
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 36 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 91
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 92 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 144
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 306 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 366 LNGYRLGDRVLQVSF 380
>gi|73977009|ref|XP_532585.2| PREDICTED: ELAV-like protein 4 isoform 1 [Canis lupus familiaris]
gi|291398932|ref|XP_002715154.1| PREDICTED: ELAV-like 4-like isoform 5 [Oryctolagus cuniculus]
gi|426215486|ref|XP_004002003.1| PREDICTED: ELAV-like protein 4 isoform 3 [Ovis aries]
Length = 366
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|297664979|ref|XP_002810890.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pongo abelii]
Length = 371
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 322 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 363
>gi|73977005|ref|XP_860272.1| PREDICTED: ELAV-like protein 4 isoform 15 [Canis lupus familiaris]
Length = 380
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 263 PVPPSTCSPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>gi|226496531|ref|NP_001152123.1| splicing factor, arginine/serine-rich 2 [Zea mays]
gi|195652939|gb|ACG45937.1| splicing factor, arginine/serine-rich 2 [Zea mays]
Length = 161
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DIY+PRD+ TG+PRGF FV+Y +A DA
Sbjct: 17 SLLVLNVSFRTTADDLFPLFDRYGKVLDIYIPRDHRTGDPRGFAFVRYNYEDEAQDAIDG 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG GR L V FA+
Sbjct: 77 LDGMRFDGRALMVQFAK 93
>gi|119578990|gb|EAW58586.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_e [Homo sapiens]
Length = 374
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 21 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 76
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 77 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 129
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 292 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 351
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 352 LNGYRLGDRVLQVSF 366
>gi|45382273|ref|NP_990161.1| ELAV-like protein 4 [Gallus gallus]
gi|5739519|gb|AAD50508.1|AF176675_1 RNA-binding protein HuD [Gallus gallus]
Length = 371
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG G + ++ + R
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPSGAVNNVKVIR 321
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
D+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 322 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 370
>gi|390465918|ref|XP_003733489.1| PREDICTED: ELAV-like protein 4 isoform 2 [Callithrix jacchus]
gi|403258117|ref|XP_003921625.1| PREDICTED: ELAV-like protein 4 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 371
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 322 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 363
>gi|62088168|dbj|BAD92531.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) variant [Homo sapiens]
Length = 367
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 15 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 70
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 71 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 123
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 285 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 345 LNGYRLGDRVLQVSF 359
>gi|440912647|gb|ELR62200.1| Heterogeneous nuclear ribonucleoprotein G, partial [Bos grunniens
mutus]
Length = 206
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF F+ + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYS 154
A M+G L G+ + V A KP+ GRR PP SRS RGYS
Sbjct: 65 AVRDMNGKSLDGKAIKVAQA----TKPA----------FESGRRGPP-LSRS--RGRGYS 107
Query: 155 RSPDYYSPPPRRGRDSRSISPRYRRYRERSYSRS 188
S DY S RD+R +P R Y R Y S
Sbjct: 108 -SRDYSS-----ARDARDFAPSPREYTYRDYGHS 135
>gi|117647212|ref|NP_001071119.1| ELAV-like protein 4 [Rattus norvegicus]
gi|2500581|sp|O09032.1|ELAV4_RAT RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|1911579|gb|AAB50733.1| HuD [Rattus sp.]
gi|165970854|gb|AAI58559.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Rattus norvegicus]
Length = 373
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 23 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 256 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 315
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 316 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
>gi|338721769|ref|XP_003364429.1| PREDICTED: ELAV-like protein 4 [Equus caballus]
Length = 371
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 322 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 363
>gi|291049789|ref|NP_001166928.1| RNA binding motif protein [Monodelphis domestica]
gi|284080635|gb|ADB77891.1| RNA binding motif protein [Monodelphis domestica]
Length = 392
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKGLEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKSIKV----EQATKPS 88
>gi|115511032|ref|NP_004423.2| ELAV-like protein 2 isoform a [Homo sapiens]
gi|197097794|ref|NP_001127414.1| ELAV-like protein 2 [Pongo abelii]
gi|149736900|ref|XP_001498035.1| PREDICTED: ELAV-like protein 2 isoform 1 [Equus caballus]
gi|291383145|ref|XP_002708096.1| PREDICTED: ELAV-like 2-like isoform 1 [Oryctolagus cuniculus]
gi|296190038|ref|XP_002743026.1| PREDICTED: ELAV-like protein 2 isoform 2 [Callithrix jacchus]
gi|311245695|ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa]
gi|332229737|ref|XP_003264044.1| PREDICTED: ELAV-like protein 2 isoform 2 [Nomascus leucogenys]
gi|332831660|ref|XP_520515.3| PREDICTED: ELAV-like protein 2 isoform 3 [Pan troglodytes]
gi|345777488|ref|XP_865062.2| PREDICTED: ELAV-like protein 2 isoform 3 [Canis lupus familiaris]
gi|402897261|ref|XP_003911687.1| PREDICTED: ELAV-like protein 2 isoform 1 [Papio anubis]
gi|403272638|ref|XP_003928159.1| PREDICTED: ELAV-like protein 2 isoform 1 [Saimiri boliviensis
boliviensis]
gi|426220513|ref|XP_004004459.1| PREDICTED: ELAV-like protein 2 isoform 1 [Ovis aries]
gi|426361461|ref|XP_004047929.1| PREDICTED: ELAV-like protein 2 isoform 1 [Gorilla gorilla gorilla]
gi|75070704|sp|Q5R9Z6.1|ELAV2_PONAB RecName: Full=ELAV-like protein 2
gi|93141258|sp|Q12926.2|ELAV2_HUMAN RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Hel-N1
gi|55729364|emb|CAH91414.1| hypothetical protein [Pongo abelii]
gi|119578989|gb|EAW58585.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_d [Homo sapiens]
gi|261860488|dbj|BAI46766.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 2
[synthetic construct]
gi|380784355|gb|AFE64053.1| ELAV-like protein 2 isoform a [Macaca mulatta]
Length = 359
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 337 LNGYRLGDRVLQVSF 351
>gi|345780791|ref|XP_859879.2| PREDICTED: ELAV-like protein 4 isoform 4 [Canis lupus familiaris]
Length = 364
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 28 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 86
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 87 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 120
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 255 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 314
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 315 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 356
>gi|221316769|ref|NP_001138247.1| ELAV-like protein 4 isoform 3 [Homo sapiens]
gi|14280325|gb|AAK57539.1| HUD4 [Homo sapiens]
Length = 383
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 47 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 105
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 106 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 139
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 274 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 333
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 334 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 375
>gi|521144|gb|AAA69698.1| ELAV-like neuronal protein 1 [Homo sapiens]
Length = 359
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRS 336
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 337 LNGYRLGDRVLQVSF 351
>gi|28879001|gb|AAH48159.1| Elavl4 protein [Mus musculus]
Length = 412
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 268 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 327
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V
Sbjct: 328 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 375
>gi|46592818|ref|NP_997568.1| ELAV-like protein 2 isoform 1 [Mus musculus]
gi|29294744|gb|AAH49125.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
gi|34849537|gb|AAH58393.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 373
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 21 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 76
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 77 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 129
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 291 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 350
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 351 LNGYRLGDRVLQVSF 365
>gi|295424162|ref|NP_001171354.1| ELAV-like protein 2 isoform 4 [Mus musculus]
gi|74206254|dbj|BAE24886.1| unnamed protein product [Mus musculus]
gi|149044490|gb|EDL97749.1| rCG53485, isoform CRA_a [Rattus norvegicus]
Length = 359
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 337 LNGYRLGDRVLQVSF 351
>gi|608543|gb|AAA96945.1| ribonucleoprotein [Xenopus laevis]
Length = 366
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
D+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 365
>gi|119578987|gb|EAW58583.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_b [Homo sapiens]
Length = 373
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 21 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 76
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 77 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 129
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 291 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 350
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 351 LNGYRLGDRVLQVSF 365
>gi|22299798|ref|NP_683045.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22295982|dbj|BAC09807.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 94
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + EDL F ++G +K +YLP D TG RGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYTATQEDLEAVFAEYGSVKQVYLPVDRETGRKRGFGFVEMSSDAEEEAAIAD 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ +P E
Sbjct: 62 LDGAEWMGRQLKV-----NKARPRE 81
>gi|125991914|ref|NP_001075075.1| ELAV-like protein 4 [Bos taurus]
gi|73976985|ref|XP_859918.1| PREDICTED: ELAV-like protein 4 isoform 5 [Canis lupus familiaris]
gi|291398926|ref|XP_002715151.1| PREDICTED: ELAV-like 4-like isoform 2 [Oryctolagus cuniculus]
gi|301772324|ref|XP_002921582.1| PREDICTED: ELAV-like protein 4-like [Ailuropoda melanoleuca]
gi|426215482|ref|XP_004002001.1| PREDICTED: ELAV-like protein 4 isoform 1 [Ovis aries]
gi|124829171|gb|AAI33284.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Bos taurus]
gi|296489084|tpg|DAA31197.1| TPA: ELAV-like 4 [Bos taurus]
Length = 366
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 317 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
>gi|242089645|ref|XP_002440655.1| hypothetical protein SORBIDRAFT_09g004685 [Sorghum bicolor]
gi|241945940|gb|EES19085.1| hypothetical protein SORBIDRAFT_09g004685 [Sorghum bicolor]
Length = 241
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 83/201 (41%), Gaps = 45/201 (22%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V + R +D F ++GRL+++ L RD FGFV++ DP DA DA++ +
Sbjct: 2 LYVGQISPHTRTQDHEDLFSKYGRLRNVDLKRD--------FGFVEFSDPRDADDARHDL 53
Query: 100 DGYLLLGRELTVVFAEENRKKP------------------SEMRARERFSRSYDGRRSPP 141
DG G + V FA R+ P M R ++ D R
Sbjct: 54 DGRRFDGSYIIVEFARGARRGPGGVPLDVRGPPFPGRCYNCGMDGWVRDCKADDWRDRCF 113
Query: 142 RYSRSPHYARGYSRSPDYY--------SPPPRRGRD-----SRSISPRYRRYRERSYSRS 188
R H R SP SP P G+ S+S+SP + R R RSYSRS
Sbjct: 114 RCGELGHIERNCKNSPKDLKRGRSYSRSPSPHHGKGRGRSYSKSLSPHHGRGRGRSYSRS 173
Query: 189 PYGSRSYSPSRSRSRSLDYSR 209
P S R R RS YSR
Sbjct: 174 P------SHCRGRGRSWSYSR 188
>gi|194207476|ref|XP_001492529.2| PREDICTED: ELAV-like protein 4 isoform 2 [Equus caballus]
Length = 383
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 47 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 105
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 106 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 139
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 274 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 333
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 334 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 375
>gi|149693657|ref|XP_001492578.1| PREDICTED: ELAV-like protein 4 isoform 4 [Equus caballus]
Length = 380
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>gi|354477196|ref|XP_003500808.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Cricetulus griseus]
gi|344244124|gb|EGW00228.1| Heterogeneous nuclear ribonucleoprotein G [Cricetulus griseus]
Length = 388
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|84662766|ref|NP_034618.2| ELAV-like protein 4 isoform a [Mus musculus]
gi|354468156|ref|XP_003496533.1| PREDICTED: ELAV-like protein 4 isoform 3 [Cricetulus griseus]
gi|2500580|sp|Q61701.1|ELAV4_MOUSE RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|603495|dbj|BAA06723.1| HuD [Mus musculus]
gi|440906869|gb|ELR57085.1| ELAV-like protein 4 [Bos grunniens mutus]
Length = 385
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 268 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 327
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 328 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377
>gi|397521309|ref|XP_003830739.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan paniscus]
gi|397521311|ref|XP_003830740.1| PREDICTED: ELAV-like protein 2 isoform 3 [Pan paniscus]
gi|397521313|ref|XP_003830741.1| PREDICTED: ELAV-like protein 2 isoform 4 [Pan paniscus]
Length = 346
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G ++P + V NL D L FG F
Sbjct: 227 PGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 286
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 287 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 338
>gi|351713507|gb|EHB16426.1| ELAV-like protein 4 [Heterocephalus glaber]
Length = 385
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 268 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 327
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 328 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377
>gi|327263683|ref|XP_003216647.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Anolis carolinensis]
Length = 397
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 45 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 100
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 101 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 153
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 315 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 374
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 375 LNGYRLGDRVLQVSF 389
>gi|254281262|ref|NP_001156871.1| ELAV-like protein 4 isoform d [Mus musculus]
gi|73977013|ref|XP_860413.1| PREDICTED: ELAV-like protein 4 isoform 17 [Canis lupus familiaris]
gi|291398928|ref|XP_002715152.1| PREDICTED: ELAV-like 4-like isoform 3 [Oryctolagus cuniculus]
gi|354468152|ref|XP_003496531.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cricetulus griseus]
gi|426215484|ref|XP_004002002.1| PREDICTED: ELAV-like protein 4 isoform 2 [Ovis aries]
Length = 371
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 322 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 363
>gi|84662764|ref|NP_001033787.1| ELAV-like protein 4 isoform b [Mus musculus]
gi|291398924|ref|XP_002715150.1| PREDICTED: ELAV-like 4-like isoform 1 [Oryctolagus cuniculus]
gi|426215488|ref|XP_004002004.1| PREDICTED: ELAV-like protein 4 isoform 4 [Ovis aries]
gi|26347767|dbj|BAC37532.1| unnamed protein product [Mus musculus]
gi|112180554|gb|AAH52451.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Mus musculus]
Length = 380
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>gi|395514482|ref|XP_003761446.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Sarcophilus
harrisii]
Length = 389
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 61 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYA 144
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 307 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 367 LNGYRLGDRVLQVSF 381
>gi|326925350|ref|XP_003208879.1| PREDICTED: ELAV-like protein 4-like [Meleagris gallopavo]
Length = 379
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 43 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 101
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 102 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 135
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 270 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 329
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
D+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 330 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 378
>gi|83699420|ref|NP_033059.2| RNA binding motif protein, X-linked-like-1 [Mus musculus]
gi|355390287|ref|NP_001239018.1| RNA binding motif protein, X-linked-like-1 [Mus musculus]
gi|81916088|sp|Q91VM5.1|RMXL1_MOUSE RecName: Full=RNA binding motif protein, X-linked-like-1; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G-like 1;
AltName: Full=RNA binding motif protein, X chromosome
retrogene; Contains: RecName: Full=RNA binding motif
protein, X-linked-like-1, N-terminally processed
gi|15030328|gb|AAH11441.1| Rbmxrt protein [Mus musculus]
gi|26334797|dbj|BAC31099.1| unnamed protein product [Mus musculus]
gi|58476937|gb|AAH89350.1| RNA binding motif protein, X chromosome retrogene [Mus musculus]
Length = 388
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|430811846|emb|CCJ30702.1| unnamed protein product [Pneumocystis jirovecii]
Length = 486
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 30 GGRGRDLPTS-LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
GGR D P L V N+ + +DLR F FG L+ + L ++ TG RG+GFVQY D
Sbjct: 217 GGRQSDAPFHRLYVGNIHFNLTEDDLRQIFEPFGELEFVQLQKEPDTGRSRGYGFVQYRD 276
Query: 89 PADAADAKYHMDGYLLLGRELTV 111
PA A DA M+G+ L GR + V
Sbjct: 277 PAQARDALEKMNGFELAGRAIRV 299
>gi|12851808|dbj|BAB29173.1| unnamed protein product [Mus musculus]
Length = 371
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 322 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 363
>gi|148678911|gb|EDL10858.1| mCG7984 [Mus musculus]
Length = 388
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|348554577|ref|XP_003463102.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cavia porcellus]
gi|354468154|ref|XP_003496532.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cricetulus griseus]
Length = 383
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 47 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 105
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 106 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 139
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 274 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 333
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 334 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 375
>gi|449267951|gb|EMC78842.1| Heterogeneous nuclear ribonucleoprotein G [Columba livia]
Length = 385
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAQD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|224058156|ref|XP_002196701.1| PREDICTED: ELAV-like protein 4 [Taeniopygia guttata]
Length = 371
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
D+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 322 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 370
>gi|71043834|ref|NP_001020834.1| RNA-binding motif protein, X chromosome [Rattus norvegicus]
gi|81907907|sp|Q4V898.1|RBMX_RAT RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; AltName: Full=RNA-binding motif protein,
X chromosome retrogene; AltName: Full=RNA-binding motif
protein, X chromosome retrogene-like; Contains: RecName:
Full=RNA-binding motif protein, X chromosome,
N-terminally processed
gi|66910650|gb|AAH97479.1| RNA binding motif protein, X-linked [Rattus norvegicus]
gi|149015799|gb|EDL75123.1| similar to heterogeneous nuclear ribonucleoprotein G - human,
isoform CRA_b [Rattus norvegicus]
Length = 390
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|391337692|ref|XP_003743199.1| PREDICTED: uncharacterized protein LOC100907227 [Metaseiulus
occidentalis]
Length = 256
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + EDL+ F + G + D+Y+PR+ E RGF FV++ D DA +A
Sbjct: 74 VSLKVDNLTYRTTVEDLKRVFRKHGDVGDVYIPRNPRNNESRGFAFVRFFDRRDAEEAMD 133
Query: 98 HMDGYLLLGRELTVVFAE 115
+DGY L GREL + A+
Sbjct: 134 ALDGYRLDGRELRIAMAK 151
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 29 YGGRGR-DL--PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQ 85
+GGRG D+ SL V NL + EDL+ F + G + D+Y+PR+ E RGF FV+
Sbjct: 3 FGGRGPPDIHGMVSLKVDNLTYRTTVEDLKRVFRKHGDVGDVYIPRNPRNNESRGFAFVR 62
Query: 86 Y 86
+
Sbjct: 63 F 63
>gi|735966|emb|CAA56649.1| surface antigen [Entamoeba histolytica]
Length = 294
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 42 VRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101
+ NL +C ++ R F +FG + +I+LP D T + +GFG V ++ P DA A MD
Sbjct: 190 ITNLPFNCTEDEFRKEFDRFGNIAEIHLPIDKITKKSKGFGKVLFVVPQDAVKACNEMDN 249
Query: 102 YLLLGRELTVVFAEEN--------------RKKPSEMRAR 127
+ GR + V +A+ + KKP+E++A+
Sbjct: 250 KFIKGRIVHVTYAKADPYSSQQTGESKNYKEKKPNELKAK 289
>gi|224066947|ref|XP_002302293.1| predicted protein [Populus trichocarpa]
gi|222844019|gb|EEE81566.1| predicted protein [Populus trichocarpa]
Length = 178
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+ V FA+
Sbjct: 77 LDGRVVDGREIMVQFAK 93
>gi|408794570|ref|ZP_11206175.1| hypothetical protein LEP1GSC017_3646 [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461805|gb|EKJ85535.1| hypothetical protein LEP1GSC017_3646 [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 89
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
+ + V NL+ + E++R F +G ++D+ + D TG RGF F+ Y +P +A +A
Sbjct: 2 ISKKIYVGNLKFTLKEENIRQIFSVYGVIQDLKMIHDRETGNFRGFAFITYANPEEAEEA 61
Query: 96 KYHMDGYLLLGRELTVVFAEENRKK 120
M+G + GR L V FAE+ RK+
Sbjct: 62 VTQMNGQPVDGRNLKVTFAEDKRKE 86
>gi|44890463|gb|AAH66958.1| SFRS2 protein [Homo sapiens]
Length = 179
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDG 101
MDG
Sbjct: 74 AMDG 77
>gi|358253472|dbj|GAA53142.1| serine/arginine-rich splicing factor 10 [Clonorchis sinensis]
Length = 346
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
L +RNL D+ F +FG + ++ +P D T + +G+ FV+Y D DAA A
Sbjct: 41 CLHIRNLPDSITYNDVWLEFKKFGEVVNVTIPMDVNTAKAKGYAFVEYADCDDAARALNE 100
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERF 130
M G LL GR LTV ++ K EM R +
Sbjct: 101 MHGILLWGRILTVQYSRSYPKTSREMALRSQL 132
>gi|395819370|ref|XP_003783066.1| PREDICTED: ELAV-like protein 2 [Otolemur garnettii]
Length = 388
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 61 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYA 144
>gi|326924314|ref|XP_003208374.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like
[Meleagris gallopavo]
Length = 385
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|345306629|ref|XP_001510789.2| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Ornithorhynchus anatinus]
Length = 420
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 31 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 90
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 91 AARDMNGKSLDGKAIKV----EQATKPS 114
>gi|344278909|ref|XP_003411234.1| PREDICTED: ELAV-like protein 4-like [Loxodonta africana]
Length = 419
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 83 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 141
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 142 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 175
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 337 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 396
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 397 LNGYRLGDRVLQVSF 411
>gi|119331082|ref|NP_001073196.1| heterogeneous nuclear ribonucleoprotein G [Gallus gallus]
gi|53130710|emb|CAG31684.1| hypothetical protein RCJMB04_9j22 [Gallus gallus]
gi|169139272|gb|ACA48585.1| RNA binding motif protein, X-linked [Gallus gallus]
Length = 385
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|291401898|ref|XP_002717345.1| PREDICTED: RNA binding motif protein, X-linked-like [Oryctolagus
cuniculus]
gi|291408303|ref|XP_002720376.1| PREDICTED: RNA binding motif protein, X-linked [Oryctolagus
cuniculus]
Length = 391
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|397521307|ref|XP_003830738.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan paniscus]
Length = 359
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 337 LNGYRLGDRVLQVSF 351
>gi|291400889|ref|XP_002716811.1| PREDICTED: RNA binding motif protein, X-linked-like [Oryctolagus
cuniculus]
Length = 391
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|449283101|gb|EMC89804.1| Splicing factor, arginine/serine-rich 2 [Columba livia]
Length = 182
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYL 103
MDG +
Sbjct: 74 AMDGAV 79
>gi|301763026|ref|XP_002916933.1| PREDICTED: ELAV-like protein 2-like [Ailuropoda melanoleuca]
Length = 427
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 75 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 130
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 131 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 183
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 345 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 404
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 405 LNGYRLGDRVLQVSF 419
>gi|449498359|ref|XP_004175818.1| PREDICTED: RNA-binding motif protein, X chromosome isoform 2
[Taeniopygia guttata]
Length = 385
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|440791603|gb|ELR12841.1| splicing factor, CC1like subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 594
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 41/75 (54%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
PT L V NL D +DLR F FG ++ I L D TG +GF FVQY P DA A
Sbjct: 270 PTRLYVGNLHTDLAEDDLRTVFEPFGDIQQINLHIDPETGRSKGFAFVQYKSPEDAKKAL 329
Query: 97 YHMDGYLLLGRELTV 111
H +G L GR+L V
Sbjct: 330 QHCNGMELAGRQLKV 344
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 58 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF--AE 115
FG+ G++ DI L D + + +GFG+++Y+D + A + ++G G+ + V AE
Sbjct: 189 FGKAGKVHDIRLITDRNSRKSKGFGYIEYLDKSSVPLALHQLNGTQCKGQTVLVQITQAE 248
Query: 116 ENR 118
+NR
Sbjct: 249 KNR 251
>gi|428210908|ref|YP_007084052.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
gi|427999289|gb|AFY80132.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
Length = 109
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D +DL F ++G +K + LP D TG PRGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYDVTEQDLNSVFAEYGTVKRVNLPTDRETGRPRGFGFVEMDTDAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ KP E
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRE 81
>gi|78191396|gb|ABB29919.1| unknown [Solanum tuberosum]
Length = 258
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEK 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+ V FA+
Sbjct: 77 LDGRVVDGREIMVRFAK 93
>gi|219115986|ref|XP_002178788.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409555|gb|EEC49486.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L + +R F FG +K + +P DY +G+ +GF FV+ DP D +A ++M
Sbjct: 8 LYVGGLADSASVQVVRAAFIPFGAVKSLDIPMDYVSGKHKGFAFVELGDPDDVTEAIFNM 67
Query: 100 DGYLLLGRELTVVFAEENR 118
DG LLGR L V A+ N+
Sbjct: 68 DGAELLGRTLKVSLAQANQ 86
>gi|224097264|ref|XP_002190045.1| PREDICTED: RNA-binding motif protein, X chromosome isoform 1
[Taeniopygia guttata]
Length = 377
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|410967448|ref|XP_003990231.1| PREDICTED: ELAV-like protein 4 [Felis catus]
Length = 494
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 47 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 105
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 106 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 274 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 333
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFS 131
D+ T + +GFGFV + +AA A ++GY L R L V F + N+ + M
Sbjct: 334 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF-KTNKAEGKSMDKEPEVE 392
Query: 132 RSYDGRR 138
R G+
Sbjct: 393 RRLSGKE 399
>gi|332219807|ref|XP_003259049.1| PREDICTED: ELAV-like protein 4 isoform 4 [Nomascus leucogenys]
gi|332808951|ref|XP_001135610.2| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 10 [Pan troglodytes]
gi|397518906|ref|XP_003829616.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pan paniscus]
gi|402854509|ref|XP_003891910.1| PREDICTED: ELAV-like protein 4 isoform 4 [Papio anubis]
gi|426329579|ref|XP_004025816.1| PREDICTED: ELAV-like protein 4 isoform 4 [Gorilla gorilla gorilla]
gi|119627246|gb|EAX06841.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_a [Homo sapiens]
Length = 402
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 66 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 124
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 125 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 158
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 293 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 352
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 353 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 394
>gi|413949175|gb|AFW81824.1| hypothetical protein ZEAMMB73_636417 [Zea mays]
Length = 102
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 39/51 (76%), Gaps = 6/51 (11%)
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFS---RSYDGR---RSPPRY 143
MDG +LLGR++ VVF EENRKKPS+MRARE+ S RSYDGR RSP Y
Sbjct: 1 MDGKMLLGRKIAVVFVEENRKKPSDMRAREKISGRGRSYDGRLRSRSPGLY 51
>gi|390465922|ref|XP_003733491.1| PREDICTED: ELAV-like protein 4 isoform 4 [Callithrix jacchus]
gi|403258121|ref|XP_003921627.1| PREDICTED: ELAV-like protein 4 isoform 3 [Saimiri boliviensis
boliviensis]
Length = 402
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 66 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 124
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 125 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 158
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 293 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 352
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 353 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 394
>gi|395730526|ref|XP_003775742.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 402
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 66 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 124
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 125 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 158
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 293 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 352
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 353 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 394
>gi|395530250|ref|XP_003767210.1| PREDICTED: ELAV-like protein 4 [Sarcophilus harrisii]
Length = 707
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 371 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 429
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 430 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 463
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 625 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 684
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 685 LNGYRLGDRVLQVSFKTNKTHK 706
>gi|355757746|gb|EHH61271.1| hypothetical protein EGM_19240 [Macaca fascicularis]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|428220065|ref|YP_007083537.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
gi|427992408|gb|AFY72101.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
Length = 83
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D E++ F ++G +K++YLP D TG RGFGFV D A+ +A
Sbjct: 2 SIYVGNLSYDVTAENITEVFTEYGAVKEVYLPTDRETGRIRGFGFVHMEDEANEEEAISA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG GR L V N+ +P E R
Sbjct: 62 LDGAEWCGRNLKV-----NKARPRERR 83
>gi|224072369|ref|XP_002303703.1| predicted protein [Populus trichocarpa]
gi|222841135|gb|EEE78682.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T LLVRN+ + +DLR FG FG++K + LP + G RGF FV+Y+ +A +A
Sbjct: 678 TKLLVRNVAFEATEKDLRQLFGPFGQIKSLRLPMKF--GNHRGFAFVEYVTKQEAQNALQ 735
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR--ERFSRSYDGRRSPPRYSR 145
+ L GR L + A+E + E+RAR +F+ +G ++P + S+
Sbjct: 736 ALSSTHLYGRHLVLERAKEG-ESLEELRARTAAQFTDEQNGLQNPAKLSK 784
Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + ++L F +FG + ++L D T +G ++ Y P AA A +
Sbjct: 265 LFVRNLPYTAIEDELEEHFSKFGNISQVHLVVDKDTKRSKGLAYIHYTLPESAARALEEL 324
Query: 100 DGYLLLGRELTVVFAEE 116
D + GR L V+ A++
Sbjct: 325 DNSIFQGRLLHVMPAKQ 341
>gi|301769089|ref|XP_002919961.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like
[Ailuropoda melanoleuca]
gi|281352732|gb|EFB28316.1| hypothetical protein PANDA_008640 [Ailuropoda melanoleuca]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|6755296|ref|NP_035382.1| RNA-binding motif protein, X chromosome [Mus musculus]
gi|262231769|ref|NP_001160095.1| RNA-binding motif protein, X chromosome [Mus musculus]
gi|81917893|sp|Q9WV02.1|RBMX_MOUSE RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|5579011|emb|CAB51362.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
gi|13277600|gb|AAH03710.1| RNA binding motif protein, X chromosome [Mus musculus]
gi|74149379|dbj|BAE22448.1| unnamed protein product [Mus musculus]
gi|148710228|gb|EDL42174.1| RNA binding motif protein, X chromosome, isoform CRA_e [Mus
musculus]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|426257491|ref|XP_004022360.1| PREDICTED: RNA-binding motif protein, X chromosome [Ovis aries]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|167517425|ref|XP_001743053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778152|gb|EDQ91767.1| predicted protein [Monosiga brevicollis MX1]
Length = 1117
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + CR ++LR F FG L ++++P D T +P+GF F+ ++ P A+ A ++
Sbjct: 541 LFVRNLPYACREDELRELFEAFGPLSELHMPIDGETKKPKGFAFITFVLPEHASQAFQNL 600
Query: 100 DGYLLLGRELTVV 112
D + GR L V+
Sbjct: 601 DNTIFQGRLLHVL 613
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 24 SPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGF 83
+ R G + + L+VRN+ + P++++ F G + + LPR Y G RGF F
Sbjct: 991 TKRERQGKKMKAKSNKLVVRNIAFEATPKEVQQLFSPHGNIVSVRLPRKQYDGTHRGFAF 1050
Query: 84 VQYIDPADAADAKYHMDGYLLLGRELTVVFAEENR 118
+++ +A DA + G L GR L + FAE++
Sbjct: 1051 IEFSTKQEARDAFSALSGTHLYGRRLAMEFAEDDE 1085
>gi|343959058|dbj|BAK63384.1| heterogeneous nuclear ribonucleoprotein G [Pan troglodytes]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|355715855|gb|AES05424.1| RNA binding motif protein, X-linked [Mustela putorius furo]
Length = 392
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 6 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 65
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 66 AARDMNGKSLDGKAIKV----EQATKPS 89
>gi|56699409|ref|NP_002130.2| RNA-binding motif protein, X chromosome isoform 1 [Homo sapiens]
gi|206725512|ref|NP_001128678.1| RNA-binding motif protein, X chromosome [Pan troglodytes]
gi|74008547|ref|XP_866434.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G isoform 6
[Canis lupus familiaris]
gi|149755726|ref|XP_001489601.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G [Equus
caballus]
gi|397482297|ref|XP_003812367.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Pan
paniscus]
gi|410989483|ref|XP_004000991.1| PREDICTED: RNA-binding motif protein, X chromosome [Felis catus]
gi|23503093|sp|P38159.3|RBMX_HUMAN RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Glycoprotein p43; AltName: Full=Heterogeneous
nuclear ribonucleoprotein G; Short=hnRNP G; Contains:
RecName: Full=RNA-binding motif protein, X chromosome,
N-terminally processed
gi|160395526|sp|A5A6M3.1|RBMX_PANTR RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|13938569|gb|AAH07435.1| RNA binding motif protein, X-linked [Homo sapiens]
gi|14279350|gb|AAK58567.1| RBMX [Homo sapiens]
gi|16306856|gb|AAH06550.1| RNA binding motif protein, X-linked [Homo sapiens]
gi|39545947|gb|AAR28036.1| heterogeneous nuclear ribonucleoprotein G [Homo sapiens]
gi|119608859|gb|EAW88453.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|119608860|gb|EAW88454.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|119608861|gb|EAW88455.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|119608863|gb|EAW88457.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|123993071|gb|ABM84137.1| RNA binding motif protein, X-linked [synthetic construct]
gi|124000061|gb|ABM87539.1| RNA binding motif protein, X-linked [synthetic construct]
gi|146741480|dbj|BAF62396.1| RNA binding motif protein, X-linked [Pan troglodytes verus]
gi|410266422|gb|JAA21177.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266426|gb|JAA21179.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266428|gb|JAA21180.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266430|gb|JAA21181.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266432|gb|JAA21182.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266434|gb|JAA21183.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266436|gb|JAA21184.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348962|gb|JAA41085.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348964|gb|JAA41086.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348966|gb|JAA41087.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348968|gb|JAA41088.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348970|gb|JAA41089.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348972|gb|JAA41090.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348974|gb|JAA41091.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348976|gb|JAA41092.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|449266192|gb|EMC77278.1| ELAV-like protein 2 [Columba livia]
Length = 388
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV Y+DP
Sbjct: 60 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPK 119
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYA 143
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 16 YGRRYRSP--SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDI 67
YG + R P + G G ++P + V NL D L FG FG + ++
Sbjct: 275 YGVKSRFPPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNV 334
Query: 68 YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
+ RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 335 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 380
>gi|410308290|gb|JAA32745.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308292|gb|JAA32746.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308294|gb|JAA32747.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308296|gb|JAA32748.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308298|gb|JAA32749.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308300|gb|JAA32750.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308302|gb|JAA32751.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308304|gb|JAA32752.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|402911572|ref|XP_003918396.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Papio
anubis]
gi|75076694|sp|Q4R7F0.1|RBMX_MACFA RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|67969238|dbj|BAE00972.1| unnamed protein product [Macaca fascicularis]
gi|380813174|gb|AFE78461.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813176|gb|AFE78462.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813178|gb|AFE78463.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813180|gb|AFE78464.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813182|gb|AFE78465.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383411873|gb|AFH29150.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418689|gb|AFH32558.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418691|gb|AFH32559.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418693|gb|AFH32560.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418695|gb|AFH32561.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418697|gb|AFH32562.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418699|gb|AFH32563.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947302|gb|AFI37256.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947304|gb|AFI37257.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947306|gb|AFI37258.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947308|gb|AFI37259.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947310|gb|AFI37260.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947312|gb|AFI37261.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947314|gb|AFI37262.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|285012962|ref|NP_001165510.1| heterogeneous nuclear ribonucleoprotein G [Bos taurus]
gi|348557903|ref|XP_003464758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like [Cavia
porcellus]
gi|284080621|gb|ADB77884.1| Rbmx [Bos taurus]
gi|296471213|tpg|DAA13328.1| TPA: RNA binding motif protein, X-linked isoform 1 [Bos taurus]
gi|440895247|gb|ELR47495.1| Heterogeneous nuclear ribonucleoprotein G [Bos grunniens mutus]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|158340529|ref|YP_001521523.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|158310770|gb|ABW32384.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 91
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
S+ V NL ++ EDLR F ++G + +++LP+D TG+ RGF FV + AD A
Sbjct: 1 MSIYVGNLSYEVAQEDLRAIFSEYGEVTNVHLPKDRETGKLRGFAFVDLGNDADEVKAIE 60
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR L V N+ +P E
Sbjct: 61 DLDGAEWMGRSLKV-----NKARPRE 81
>gi|3256007|emb|CAA80599.1| hnRNP G protein [Homo sapiens]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|291398930|ref|XP_002715153.1| PREDICTED: ELAV-like 4-like isoform 4 [Oryctolagus cuniculus]
Length = 402
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 66 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 124
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 125 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 158
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 293 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 352
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 353 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 394
>gi|346716298|ref|NP_001231025.1| heterogeneous nuclear ribonucleoprotein G [Sus scrofa]
Length = 390
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|354475287|ref|XP_003499861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like
[Cricetulus griseus]
Length = 289
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|410227798|gb|JAA11118.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227802|gb|JAA11120.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227804|gb|JAA11121.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227806|gb|JAA11122.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227808|gb|JAA11123.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227810|gb|JAA11124.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227812|gb|JAA11125.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|403256025|ref|XP_003920702.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Saimiri
boliviensis boliviensis]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|390474384|ref|XP_002757703.2| PREDICTED: RNA-binding motif protein, X chromosome-like, partial
[Callithrix jacchus]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|4098582|gb|AAD00328.1| RBM1 [Sminthopsis macroura]
Length = 390
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF F+ + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKGLESVFGKYGRIVEVLLMKDRETNKSRGFAFITFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKSIKV----EQATKPS 88
>gi|403308741|ref|XP_003944810.1| PREDICTED: uncharacterized protein LOC101031882, partial [Saimiri
boliviensis boliviensis]
Length = 346
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA DA+
Sbjct: 120 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDQRDAEDAEA 179
Query: 98 HMDGYLL 104
MDG L
Sbjct: 180 AMDGAEL 186
>gi|297711157|ref|XP_002832216.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Pongo abelii]
Length = 438
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 52 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 111
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 112 AARDMNGKSLDGKAIKV----EQATKPS 135
>gi|313246638|emb|CBY35523.1| unnamed protein product [Oikopleura dioica]
Length = 348
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 58/94 (61%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VR + RP++++ F ++G ++D+++P D+ T +PRGF ++++ DA A+
Sbjct: 56 TSLYVRPIDGSTRPDEIKLLFNEYGNVRDVHIPIDFNTRQPRGFAYIEFESIEDAEYAQK 115
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFS 131
++ L + L V FA+ +RK P +M+ ++ +
Sbjct: 116 KLNRTRLGDKMLHVDFAQGDRKTPGQMKTQKEAT 149
>gi|149015800|gb|EDL75124.1| similar to heterogeneous nuclear ribonucleoprotein G - human,
isoform CRA_c [Rattus norvegicus]
Length = 289
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|5579009|emb|CAB51361.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
gi|74228065|dbj|BAE37998.1| unnamed protein product [Mus musculus]
gi|148710226|gb|EDL42172.1| RNA binding motif protein, X chromosome, isoform CRA_c [Mus
musculus]
Length = 289
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|417410380|gb|JAA51664.1| Putative cyclophilin-type peptidyl-prolyl cis-trans isomerase,
partial [Desmodus rotundus]
Length = 398
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 6 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 65
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 66 AARDMNGKSLDGKAIKV----EQATKPS 89
>gi|313236719|emb|CBY11975.1| unnamed protein product [Oikopleura dioica]
Length = 348
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 58/94 (61%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VR + RP++++ F ++G ++D+++P D+ T +PRGF ++++ DA A+
Sbjct: 56 TSLYVRPIDGSTRPDEIKLLFNEYGNVRDVHIPIDFNTRQPRGFAYIEFESIEDAEYAQK 115
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFS 131
++ L + L V FA+ +RK P +M+ ++ +
Sbjct: 116 KLNRTRLGDKMLHVDFAQGDRKTPGQMKTQKEAT 149
>gi|380811822|gb|AFE77786.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383417591|gb|AFH32009.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
Length = 289
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|296236539|ref|XP_002763369.1| PREDICTED: RNA-binding motif protein, X chromosome [Callithrix
jacchus]
Length = 289
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|170579742|ref|XP_001894964.1| ADP-ribose pyrophosphatase, mitochondrial precursor [Brugia malayi]
gi|158598261|gb|EDP36190.1| ADP-ribose pyrophosphatase, mitochondrial precursor, putative
[Brugia malayi]
Length = 401
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL + N+ + P+DLR F ++G + DI++PRD YT + +GFGFV++ DA A
Sbjct: 291 SLKIDNISYQTAPQDLRRLFEKYGEIGDIHIPRDRYTKQSKGFGFVRFYSRRDAEYAMDR 350
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
MDG + GRE+ V A R P + R+R S Y
Sbjct: 351 MDGRWVDGREIRVAMARYER--PIDERSRNGGSSGY 384
>gi|351715732|gb|EHB18651.1| Heterogeneous nuclear ribonucleoprotein G [Heterocephalus glaber]
Length = 356
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|294942803|ref|XP_002783687.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
gi|239896223|gb|EER15483.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
Length = 691
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G+ DL S+ V + R +DLR F +FG + D+++P D YTG RGFGFV++ +
Sbjct: 505 GQLNDL-FSVKVDGIDERVRKDDLREAFSKFGEIGDVFIPVDRYTGVSRGFGFVRFYERR 563
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRK 119
DA DA MD G +TV A N++
Sbjct: 564 DAEDAIRDMDNKEFQGNRITVAAAMYNKE 592
>gi|281427346|ref|NP_001163962.1| RNA binding motif protein 19 [Xenopus (Silurana) tropicalis]
gi|189442184|gb|AAI67335.1| Unknown (protein for MGC:135501) [Xenopus (Silurana) tropicalis]
Length = 542
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 5 SYSYSPSPPRD-----YGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFG 59
+Y+ SPS P+ + +R + + GR L VRNL + C +DL F
Sbjct: 353 NYTKSPSVPQKTQSRPWEQRDKQEELQEDVSESGR-----LFVRNLPYTCNEDDLEKLFS 407
Query: 60 QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112
++G + +I+ P D T +P+GF FV ++ A A +DG + GR L V+
Sbjct: 408 KYGPISEIHFPIDSLTKKPKGFAFVTFLITEHAVKAYAEVDGQIFQGRMLHVL 460
>gi|32476441|ref|NP_869435.1| RNA-binding protein [Rhodopirellula baltica SH 1]
gi|32446986|emb|CAD78892.1| RNA-binding protein [Rhodopirellula baltica SH 1]
Length = 206
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 19 RYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 78
R R S G +G L T++ V NL E+LRG F Q+G + + + D TG
Sbjct: 47 RMREASCLVGDGLQGIRLVTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRS 106
Query: 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
RGF FV+ D A DA +++G+ + GR +TV
Sbjct: 107 RGFAFVEMADAEGAKDAIENLNGHEIDGRSVTV 139
>gi|167382576|ref|XP_001736171.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901525|gb|EDR27604.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 697
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ + NL +C +D+R F +FG + +I+LP D T + +GFGFV ++ P DA A M
Sbjct: 188 IYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEM 247
Query: 100 DGYLLLGRELTVVFAEEN--------------RKKPSEMRAR 127
D + GR + V +A+ + KK +E++A+
Sbjct: 248 DNKFIKGRIVHVTYAKADPYSSQQTGESKNYKEKKQNELKAK 289
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLV+N+ + +++R F +G L+ + LP+ G+ +GF FV+Y +AA+A +
Sbjct: 618 LLVKNVPFETNIKEVRELFRTYGTLRGVRLPKKV-DGQNKGFAFVEYATKQEAANAMAAL 676
Query: 100 DGYLLLGRELTVVFAEE 116
GR L + +A++
Sbjct: 677 KNSHFYGRHLIIEYAKD 693
>gi|449707231|gb|EMD46930.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 685
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ + NL +C +D+R F +FG + +I+LP D T + +GFGFV ++ P DA A M
Sbjct: 189 IYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEM 248
Query: 100 DGYLLLGRELTVVFAEEN--------------RKKPSEMRAR 127
D + GR + V +A+ + KK +E++A+
Sbjct: 249 DNKFIKGRIVHVTYAKADPYSNQQVGESKNYKEKKQNELKAK 290
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLV+N+ + +++R F +G L+ + LP+ G+ +GF FV+Y +AA+A +
Sbjct: 606 LLVKNVPFETNIKEVRELFRTYGTLRGVRLPKKV-DGQNKGFAFVEYATKQEAANAMAAL 664
Query: 100 DGYLLLGRELTVVFAEE 116
GR L + +A++
Sbjct: 665 KNSHFYGRHLIIEYAKD 681
>gi|407039238|gb|EKE39532.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 697
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ + NL +C +D+R F +FG + +I+LP D T + +GFGFV ++ P DA A M
Sbjct: 188 IYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEM 247
Query: 100 DGYLLLGRELTVVFAEEN--------------RKKPSEMRAR 127
D + GR + V +A+ + KK +E++A+
Sbjct: 248 DNKFIKGRIVHVTYAKADPYSNQQVGESKNYKEKKQNELKAK 289
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLV+N+ + +++R F +G L+ + LP+ G+ +GF FV+Y +AA+A +
Sbjct: 618 LLVKNVPFETNIKEVRELFRTYGTLRGVRLPKKV-DGQNKGFAFVEYATKQEAANAMAAL 676
Query: 100 DGYLLLGRELTVVFAEE 116
GR L + +A++
Sbjct: 677 KNSHFYGRHLIIEYAKD 693
>gi|425455329|ref|ZP_18835049.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9807]
gi|389803795|emb|CCI17308.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9807]
Length = 100
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
++ V NL ++ EDL+G F ++G + +YLP D TG+ RGFGFV+ + A A
Sbjct: 2 TIYVGNLVYEVTKEDLQGVFAEYGTVVRVYLPVDQATGKMRGFGFVEMSSDEEEAKAIET 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR++ V N+ +P E
Sbjct: 62 LDGAEWMGRQMKV-----NKARPRE 81
>gi|67479353|ref|XP_655058.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56472162|gb|EAL49670.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 685
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ + NL +C +D+R F +FG + +I+LP D T + +GFGFV ++ P DA A M
Sbjct: 189 IYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEM 248
Query: 100 DGYLLLGRELTVVFAEEN--------------RKKPSEMRAR 127
D + GR + V +A+ + KK +E++A+
Sbjct: 249 DNKFIKGRIVHVTYAKADPYSNQQVGESKNYKEKKQNELKAK 290
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLV+N+ + +++R F +G L+ + LP+ G+ +GF FV+Y +AA+A +
Sbjct: 606 LLVKNVPFETNIKEVRELFRTYGTLRGVRLPKKV-DGQNKGFAFVEYATKQEAANAMAAL 664
Query: 100 DGYLLLGRELTVVFAEE 116
GR L + +A++
Sbjct: 665 KNSHFYGRHLIIEYAKD 681
>gi|328852591|gb|EGG01736.1| hypothetical protein MELLADRAFT_23270 [Melampsora larici-populina
98AG31]
Length = 510
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T LLV+N+ + ++LR FG FG+LK + LP+ + RGFGF++Y +A +A
Sbjct: 419 TKLLVKNVPFETSKQELRELFGSFGKLKSVRLPKKL-DRKTRGFGFIEYTTKKEAEEAMK 477
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+ LLGR L + +A + + ++RA+
Sbjct: 478 SLKHTHLLGRHLVISYANDKDEDIEQLRAK 507
>gi|158333760|ref|YP_001514932.1| RNA-binding domain-containing protein [Acaryochloris marina
MBIC11017]
gi|359463897|ref|ZP_09252460.1| RNA-binding region [Acaryochloris sp. CCMEE 5410]
gi|158304001|gb|ABW25618.1| RNA-binding region [Acaryochloris marina MBIC11017]
Length = 95
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D +DL F ++G +K LP D TG RGFGFV+ D A+ A
Sbjct: 2 SIYVGNLSYDVTEQDLNTVFAEYGTVKSAKLPTDRETGRVRGFGFVEMSDDAEETKAIEE 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR L V N+ KP E
Sbjct: 62 LDGAEWMGRTLKV-----NKAKPRE 81
>gi|432099499|gb|ELK28647.1| Heterogeneous nuclear ribonucleoprotein G-like 1 [Myotis davidii]
Length = 535
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 174 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 233
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 234 AARDMNGKSLDGKAIKV----EQATKPS 257
>gi|395860828|ref|XP_003802706.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Otolemur
garnettii]
Length = 391
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF F+ + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFITFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|403300126|ref|XP_003940808.1| PREDICTED: RNA binding motif protein, X-linked-like-1-like, partial
[Saimiri boliviensis boliviensis]
Length = 268
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|148710225|gb|EDL42171.1| RNA binding motif protein, X chromosome, isoform CRA_b [Mus
musculus]
Length = 301
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|294921861|ref|XP_002778742.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
gi|239887462|gb|EER10537.1| serine/arginine rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
Length = 840
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G+ DL S+ V + R +DLR F +FG + D+++P D YTG RGFGFV++ +
Sbjct: 747 GQLNDL-FSVKVDGIDERVRKDDLREAFSKFGEIGDVFIPVDRYTGVSRGFGFVRFYERR 805
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRK 119
DA DA MD G +TV A N++
Sbjct: 806 DAEDAIRDMDNKEFQGNRITVAAAMYNKE 834
>gi|114691838|ref|XP_001139951.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 3 [Pan troglodytes]
gi|114691958|ref|XP_001136088.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 3 [Pan troglodytes verus]
gi|410060470|ref|XP_003949299.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J [Pan troglodytes verus]
Length = 497
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKTLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DGRRRPPASSRN 102
>gi|440714448|ref|ZP_20895027.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
gi|436440644|gb|ELP33948.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
Length = 196
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 19 RYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 78
R R S G +G L T++ V NL E+LRG F Q+G + + + D TG
Sbjct: 36 RMREASCLVGDGLQGIRLVTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRS 95
Query: 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
RGF FV+ D A DA +++G+ + GR +TV
Sbjct: 96 RGFAFVEMADAEGAKDAIENLNGHEIDGRSVTV 128
>gi|421614043|ref|ZP_16055112.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
gi|408495250|gb|EKJ99839.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
Length = 189
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 19 RYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 78
R R S G +G L T++ V NL E+LRG F Q+G + + + D TG
Sbjct: 36 RMREASCLVGDGLQGIRLVTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRS 95
Query: 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
RGF FV+ D A DA +++G+ + GR +TV
Sbjct: 96 RGFAFVEMADAEGAKDAIENLNGHEIDGRSVTV 128
>gi|417304381|ref|ZP_12091404.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|449136828|ref|ZP_21772190.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
gi|327539333|gb|EGF25954.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|448884533|gb|EMB15023.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
Length = 195
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 19 RYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 78
R R S G +G L T++ V NL E+LRG F Q+G + + + D TG
Sbjct: 36 RMREASCLVGDGLQGIRLVTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRS 95
Query: 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
RGF FV+ D A DA +++G+ + GR +TV
Sbjct: 96 RGFAFVEMADAEGAKDAIENLNGHEIDGRSVTV 128
>gi|327286671|ref|XP_003228053.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 1
[Anolis carolinensis]
Length = 384
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVEQATK 86
>gi|225459316|ref|XP_002285794.1| PREDICTED: uncharacterized protein LOC100243776 [Vitis vinifera]
gi|302141951|emb|CBI19154.3| unnamed protein product [Vitis vinifera]
Length = 257
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVEK 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GRE+ V FA+
Sbjct: 77 LDGRNVDGREIMVQFAK 93
>gi|387018118|gb|AFJ51177.1| Heterogeneous nuclear ribonucleoprotein G-like [Crotalus
adamanteus]
Length = 384
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L V L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFVGGLNIETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKSIKVEQATK 86
>gi|542850|pir||S41766 heterogeneous nuclear ribonucleoprotein G - human
Length = 437
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|348525751|ref|XP_003450385.1| PREDICTED: ELAV-like protein 2-like [Oreochromis niloticus]
Length = 440
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G D T+L+V L + E+L+ FG
Sbjct: 87 NGPTCNNTSNGPSTITNNCSSPVESGSV----EDSKTNLIVNYLPQNMTQEELKSLFGSI 142
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV Y+DP DA A ++G L + + V +A
Sbjct: 143 GEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYA 195
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 358 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIAS 417
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 418 LNGYRLGDRVLQVSF 432
>gi|344297709|ref|XP_003420539.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G [Loxodonta
africana]
Length = 391
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVEQATK 86
>gi|348504313|ref|XP_003439706.1| PREDICTED: ELAV-like protein 4-like [Oreochromis niloticus]
Length = 476
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G+
Sbjct: 141 CPSPM-QTGPTNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 199
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
GFV YIDP DA A ++G L + + V +A
Sbjct: 200 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 232
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 394 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 453
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 454 LNGYRLGDRVLQVSFKTNKTHK 475
>gi|149015798|gb|EDL75122.1| similar to heterogeneous nuclear ribonucleoprotein G - human,
isoform CRA_a [Rattus norvegicus]
Length = 306
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|303275063|ref|XP_003056831.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461183|gb|EEH58476.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 96
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SL V N+ + +R F G + D+Y+PRD TG RGF FV++ID +A DA
Sbjct: 12 SLKVDNIAYRVDVGRVREMFAAHGEIGDVYMPRDRTTGNSRGFAFVRFIDKNEAEDAIKA 71
Query: 99 MDGYLLLGRELTVVFAEE 116
M+ + GR + V FAEE
Sbjct: 72 MNEKEIEGRAIRVAFAEE 89
>gi|114691840|ref|XP_001139693.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 1 [Pan troglodytes]
gi|114691960|ref|XP_001135842.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 1 [Pan troglodytes verus]
Length = 460
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKTLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DGRRRPPASSRN 102
>gi|297710828|ref|XP_002832064.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 [Pongo
abelii]
Length = 1051
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L V L + L+ FG++GR+ ++L +D T + RGF FV + PADA
Sbjct: 5 DRPEKLFVGGLNLKTDEKALKAEFGKYGRIIKVFLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V A + K S
Sbjct: 65 AARDMNGKCLDGKSIKVAQAIKQAFKNS 92
>gi|282900575|ref|ZP_06308517.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
gi|281194375|gb|EFA69330.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
Length = 103
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D EDL+ F ++G + + LP D TG PRGFGFV A+ A
Sbjct: 2 SIYVGNLSYDVTLEDLKSAFSKYGNVSKVQLPTDKETGRPRGFGFVDMSSEAEENAAIDA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++G +GR+L V N+ +P E R+ +
Sbjct: 62 LNGAEWMGRQLKV-----NKARPREERSSQ 86
>gi|327286673|ref|XP_003228054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 2
[Anolis carolinensis]
Length = 374
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVEQATK 86
>gi|432919034|ref|XP_004079712.1| PREDICTED: ELAV-like protein 2-like [Oryzias latipes]
Length = 389
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G D T+L+V L + E+L+ FG
Sbjct: 36 NGPTCNNTSNGPSTMSNNCSSPVESGSI----EDSKTNLIVNYLPQNMTQEELKSLFGSI 91
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV Y+DP DA A ++G L + + V +A
Sbjct: 92 GEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYA 144
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 307 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIAS 366
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 367 LNGYRLGDRVLQVSF 381
>gi|344247055|gb|EGW03159.1| Heterogeneous nuclear ribonucleoprotein G [Cricetulus griseus]
Length = 384
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|157823451|ref|NP_001100890.1| RNA-binding motif protein, X chromosome retrogene-like [Rattus
norvegicus]
gi|71152131|sp|P84586.1|RMXRL_RAT RecName: Full=RNA-binding motif protein, X chromosome
retrogene-like; AltName: Full=Heterogeneous nuclear
ribonucleoprotein G retrogene-like; Short=hnRNP G;
AltName: Full=RNA-binding motif protein, X chromosome
retrogene; Contains: RecName: Full=RNA-binding motif
protein, X chromosome retrogene-like, N-terminally
processed
gi|149037963|gb|EDL92323.1| RNA binding motif protein, X chromosome retrogene (predicted)
[Rattus norvegicus]
Length = 388
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
M+G L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>gi|427415488|ref|ZP_18905672.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425756163|gb|EKU97020.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 90
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D EDL F ++G +K ++LP D TG RGF FV+ ++ A
Sbjct: 2 SIYVGNLSYDATNEDLTAVFAEYGTVKSVHLPTDRETGRMRGFAFVEMGAESEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG +GR+L V N+ KP E R+
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREERS 84
>gi|82802769|gb|ABB92435.1| RBM1 [Homo sapiens]
Length = 384
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|82802771|gb|ABB92436.1| RBM1 [Pan troglodytes]
gi|82802773|gb|ABB92437.1| RBM1 [Gorilla gorilla]
Length = 385
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|119608862|gb|EAW88456.1| RNA binding motif protein, X-linked, isoform CRA_b [Homo sapiens]
Length = 221
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|82802777|gb|ABB92439.1| RBM1 [Hylobates lar]
Length = 385
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|82802775|gb|ABB92438.1| RBM1 [Pongo pygmaeus]
Length = 385
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|300122032|emb|CBK22606.2| unnamed protein product [Blastocystis hominis]
Length = 119
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 36 LPTSLL--VRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
L TSL+ + L + L G F FG +K++ +P D TG RGFGFV++ D DAA
Sbjct: 5 LQTSLVYRIGGLDDQVDEQVLLGVFVPFGEVKEVTIPLDAGTGLKRGFGFVEFEDAEDAA 64
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYD 135
+A+ +M+ L G+ + V ++ NR KPS + + +++ D
Sbjct: 65 EARDNMNNAELFGKVIKVTYS--NRMKPSLISQKPIWAQVDD 104
>gi|114691962|ref|XP_001136007.1| PREDICTED: similar to RBMY1A1 protein isoform 2 [Pan troglodytes
verus]
Length = 390
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKTLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DGRRRPPASSRN 102
>gi|348528569|ref|XP_003451789.1| PREDICTED: probable RNA-binding protein 19 [Oreochromis niloticus]
Length = 926
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 14 RDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDY 73
R++ R+ + GR L +RNL + C ED++ F + G L D+ P D
Sbjct: 380 RNFSRKLKEDEEEEDVSESGR-----LFIRNLPYTCTEEDIKELFSKHGPLSDVLFPIDT 434
Query: 74 YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
T P+GF FV Y+ P +A A +DG++ GR L ++ + ++K
Sbjct: 435 LTKRPKGFAFVTYMIPENAVTALAQLDGHIFQGRMLHLLPSTAKKEK 481
Score = 39.7 bits (91), Expect = 0.84, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAK 96
+ +LVRN+ ++R F FG LK + LP+ +G RGFGFV ++ DA A
Sbjct: 803 SKILVRNVPFQASVREIRELFCTFGELKTVRLPKKAAGSGSHRGFGFVDFLTKQDAKKAF 862
Query: 97 YHM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 863 AALCHSTHLYGRRLVLEWAD 882
>gi|431891348|gb|ELK02224.1| Heterogeneous nuclear ribonucleoprotein G [Pteropus alecto]
Length = 278
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|432856226|ref|XP_004068415.1| PREDICTED: ELAV-like protein 4-like [Oryzias latipes]
Length = 439
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G+
Sbjct: 103 CPSPM-QTGPTNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 161
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
GFV YIDP DA A ++G L + + V +A
Sbjct: 162 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 194
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 357 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 416
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 417 LNGYRLGDRVLQVSFKTNKTHK 438
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP DA
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 122
Query: 94 DAKYHMDGYLLLGRELTVVFA 114
A ++G L + + V +A
Sbjct: 123 KAINTLNGLRLQTKTIKVSYA 143
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 293 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 352
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 353 LNGYRLGDRVLQVSF 367
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP DA
Sbjct: 34 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 93
Query: 94 DAKYHMDGYLLLGRELTVVFA 114
A ++G L + + V +A
Sbjct: 94 KAINTLNGLRLQTKTIKVSYA 114
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 264 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 323
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 324 LNGYRLGDRVLQVSF 338
>gi|428304645|ref|YP_007141470.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428246180|gb|AFZ11960.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 103
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL D +DL F ++G +K + LP D TG RGFGFV+ A+ A
Sbjct: 2 SVYVGNLSFDVTQDDLSQAFAEYGTVKSVQLPTDRETGRMRGFGFVEMSSDAEETAAIDA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG +GR+L V N+ KP E R
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREDR 83
>gi|260825257|ref|XP_002607583.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
gi|229292931|gb|EEN63593.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
Length = 183
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%)
Query: 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
G P L V L D E L F ++G + D + D TG RGFGFV + + +DA
Sbjct: 3 GEKEPGKLFVGGLSWDTTSEGLESTFSEYGEITDCKVITDRETGRSRGFGFVTFANDSDA 62
Query: 93 ADAKYHMDGYLLLGRELTVVFA 114
A+AK MDG L R++ V +A
Sbjct: 63 ANAKKCMDGTELDSRQIRVDYA 84
>gi|374253685|sp|D4AE41.1|RMXL1_RAT RecName: Full=RNA binding motif protein, X-linked-like-1; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G-like 1;
Contains: RecName: Full=RNA binding motif protein,
X-linked-like-1, N-terminally processed
Length = 388
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
M+G L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>gi|449514035|ref|XP_002190678.2| PREDICTED: ELAV-like protein 2-like [Taeniopygia guttata]
Length = 380
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+L+ FG G ++ L RD TG G
Sbjct: 52 NCPSPVDS--GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGPSLG 109
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV Y+DP DA A ++G+ L + + V +A
Sbjct: 110 YGFVNYVDPKDAKKAVNTLNGFRLQTKTIKVSYA 143
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 298 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 357
Query: 99 MDGYLLLGRELTVVFAEENRKKP 121
++GY L R L V F KP
Sbjct: 358 LNGYRLGDRVLQVSFKTNKTHKP 380
>gi|363744747|ref|XP_001233484.2| PREDICTED: ELAV-like protein 2 isoform 1 [Gallus gallus]
Length = 345
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L E+L+ FG G ++ L RD TG+ G+GFV Y+DP
Sbjct: 31 GNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPK 90
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 91 DAEKAINTLNGLRLQTKTIKVSYA 114
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYRSP--SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P+P +R+R P + G G ++P + V NL D L FG F
Sbjct: 226 PAPLAQQAQRFRFPPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGPF 285
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 286 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 337
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP DA
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 122
Query: 94 DAKYHMDGYLLLGRELTVVFA 114
A ++G L + + V +A
Sbjct: 123 KAINTLNGLRLQTKTIKVSYA 143
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 10 PSPPRDYGRRYR-SP-SPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQF 61
P P +R+R SP + G G + P + V NL D L FG F
Sbjct: 255 PGPLAQQAQRFRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMFGPF 314
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
G + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 315 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 366
>gi|427714396|ref|YP_007063020.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
6312]
gi|427378525|gb|AFY62477.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
6312]
Length = 91
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + EDL F ++G +K +YLP D TG RGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYTATQEDLEAVFAEYGSVKQVYLPVDRDTGRKRGFGFVEMSTDAEEDAAIAE 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ +P E
Sbjct: 62 LDGAEWMGRQLKV-----NKARPRE 81
>gi|82802779|gb|ABB92440.1| RBM1 [Chlorocebus sabaeus]
Length = 385
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|422304104|ref|ZP_16391453.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9806]
gi|389790787|emb|CCI13324.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9806]
Length = 97
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
S+ V NL + +D+ F ++G++K ++LP D TG+ RGF FV+ P + A A
Sbjct: 1 MSIYVGNLPFEVDQDDVVEVFKEYGKIKRVHLPMDRETGKKRGFAFVEMETPEEEAKAIA 60
Query: 98 HMDGYLLLGRELTVVFAEENRKKPS 122
+DG +GREL V A E KPS
Sbjct: 61 ALDGAQWMGRELKVNQAREREPKPS 85
>gi|297279100|ref|XP_002801676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 1
[Macaca mulatta]
gi|297279102|ref|XP_002801677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 2
[Macaca mulatta]
Length = 391
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|21361809|ref|NP_062556.2| RNA binding motif protein, X-linked-like-1 [Homo sapiens]
gi|242117971|ref|NP_001156008.1| RNA binding motif protein, X-linked-like-1 [Homo sapiens]
gi|74760797|sp|Q96E39.1|RMXL1_HUMAN RecName: Full=RNA binding motif protein, X-linked-like-1; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G-like 1;
Contains: RecName: Full=RNA binding motif protein,
X-linked-like-1, N-terminally processed
gi|15277908|gb|AAH12942.1| Cysteine conjugate-beta lyase 2 [Homo sapiens]
gi|57997143|emb|CAI46148.1| hypothetical protein [Homo sapiens]
gi|119593561|gb|EAW73155.1| hCG23341, isoform CRA_b [Homo sapiens]
gi|119593562|gb|EAW73156.1| hCG23341, isoform CRA_b [Homo sapiens]
gi|208967733|dbj|BAG72512.1| cysteine conjugate-beta lyase 2 [synthetic construct]
Length = 390
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|410921400|ref|XP_003974171.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 4-like [Takifugu
rubripes]
Length = 414
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 18 RRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE 77
+ PSP G D T+L+V L + E+ R FG G ++ L RD TG+
Sbjct: 63 NNHGCPSPM-QTGPTNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 121
Query: 78 PRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G+GFV YIDP DA A ++G L + + V +A
Sbjct: 122 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 158
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 332 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 391
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 392 LNGYRLGDRVLQVSFKTNKTHK 413
>gi|255568494|ref|XP_002525221.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223535518|gb|EEF37187.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 305
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 86/178 (48%), Gaps = 37/178 (20%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L V +L R DL F ++GR++D+ + RDY FV++ DP DA DA+Y
Sbjct: 11 TRLYVGHLASRTRSRDLEYLFSKYGRVRDVDMKRDY--------AFVEFSDPRDADDARY 62
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS------PHYAR 151
H+DG L G + V FA + R SR Y GR PP R H+AR
Sbjct: 63 HLDGKDLDGSRIIVEFA----------KGVPRGSREYLGRGPPPGSGRCFNCGIDGHWAR 112
Query: 152 GYSRSPDYYSPPPR---RGRDSRSI--SPRYRRYRERSYSRSPYGSRSYSPSRSRSRS 204
++ D+ + R RG R+ SP+ + R RSYSRSP SP R RSRS
Sbjct: 113 D-CKAGDWKNKCYRCGERGHIERNCKNSPK-KLKRGRSYSRSP------SPRRGRSRS 162
>gi|425447147|ref|ZP_18827139.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9443]
gi|389732378|emb|CCI03686.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9443]
Length = 100
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
++ V NL ++ EDL G F ++G + +YLP D TG+ RGFGFV+ + A A
Sbjct: 2 TIYVGNLVYEVTKEDLHGVFAEYGTVVRVYLPVDQATGKMRGFGFVEMSSDEEEAKAIET 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR++ V N+ +P E
Sbjct: 62 LDGAEWMGRQMKV-----NKARPRE 81
>gi|332809466|ref|XP_003339040.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 [Pan
troglodytes]
gi|332809468|ref|XP_003308251.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 [Pan
troglodytes]
gi|426330271|ref|XP_004026144.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 3
[Gorilla gorilla gorilla]
gi|426330273|ref|XP_004026145.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 4
[Gorilla gorilla gorilla]
Length = 391
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|444730998|gb|ELW71366.1| Heterogeneous nuclear ribonucleoprotein G-like 1 [Tupaia chinensis]
Length = 194
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L+ + + L FG++GR+ ++ L +D+ + RGF FV + PADA D
Sbjct: 5 DHPGKLFIGELKTETNEKALEAIFGKYGRIVEVLLMKDHEINKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|328773827|gb|EGF83864.1| hypothetical protein BATDEDRAFT_8977, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 873
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
++VRNL + C PED+ F FG + ++++P D T + +G+ F+ Y+ P +A +A +
Sbjct: 341 IMVRNLTYLCSPEDIEELFKPFGPISEVHIPIDRETKKSKGYAFIMYLMPENAVNAYTTL 400
Query: 100 DGYLLLGRELTVVFAEENRKKPSE-MRARERFSRSYDGRR 138
D + GR + +V A+E K E + + F ++ + +R
Sbjct: 401 DNTIFQGRIMQIVPAKERPKAADETLTGPQTFKKNRETQR 440
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L+VRN+ + +D++ F F ++K + +P Y G+ RGF FV ++ +A A
Sbjct: 761 TKLVVRNVPFEASKKDIKELFSSFAQVKSVRIPTKY-DGQHRGFAFVDFLTKQEAKTAYD 819
Query: 98 HMDGYLLLGRELTVVFAEEN 117
+ L GR L + +A+++
Sbjct: 820 TLGATHLYGRHLVLEWAQDD 839
>gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
Length = 359
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP DA
Sbjct: 33 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 92
Query: 94 DAKYHMDGYLLLGRELTVVFA 114
A ++G L + + V +A
Sbjct: 93 KAINTLNGLRLQTKTIKVSYA 113
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 337 LNGYRLGDRVLQVSF 351
>gi|328865472|gb|EGG13858.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 868
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T + ++N+ +C+P ++R F +G LK + LP TG RGFGFV+Y+ +A +A
Sbjct: 762 TKISIKNIAFECKPIEIRKLFTTYGELKSVRLPSKP-TGGHRGFGFVEYLTEQEAKNAME 820
Query: 98 HMDGYLLLGRELTVVFAEENRK-KPSEMRARERFSRSYDGRRSPPRYS 144
+ L GR L + FAEE++ + +A +S++ RS R++
Sbjct: 821 ALQNSHLYGRHLILSFAEEDKNIEQLREKASVDYSKASGTNRSKNRFN 868
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RNL + +D++ F G+L ++Y+P D + + +G FV ++ P A A +
Sbjct: 326 LFIRNLSYTTTEDDIKKFFEAHGKLSEVYIPIDRDSKKSKGIAFVLFMIPEQAMRAANDL 385
Query: 100 DGYLLLGRELTVVFAEENRKKPSEM 124
DG L GR + ++ A+ K ++
Sbjct: 386 DGKTLQGRIIHILAAKNAPSKEVQL 410
>gi|220909892|ref|YP_002485203.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219866503|gb|ACL46842.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 98
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D DL FG++G +K ++LP D TG RGF FV+ + + A
Sbjct: 2 SIYVGNLSYDVTQNDLVRAFGEYGNVKSVHLPTDRETGRVRGFAFVEMENTPEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRY 143
+DG +GR+L V N+ KP R +R S + G RY
Sbjct: 62 LDGAEWMGRDLKV-----NKAKP---REDKRSSGGWSGNNRSSRY 98
>gi|213625406|gb|AAI70539.1| Xel-1 protein [Xenopus laevis]
Length = 388
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP DA
Sbjct: 62 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 121
Query: 94 DAKYHMDGYLLLGRELTVVFA 114
A ++G L + + V +A
Sbjct: 122 KAINTLNGLRLQTKTIKVSYA 142
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 306 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 366 LNGYRLGDRVLQVSF 380
>gi|395841993|ref|XP_003793806.1| PREDICTED: uncharacterized protein LOC100943026 [Otolemur
garnettii]
Length = 308
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
++ TS+ V NL + LR F ++G + D+Y+PRD T E RGF F+++ A D
Sbjct: 10 EVMTSIKVNNLTYHTSSYTLRRMFEKYGPIDDVYIPRDRLTNESRGFAFIRFCYKHHAED 69
Query: 95 AKYHMDGYLLLGRELTVVFAE-----ENRKKPSEM 124
A +DG LL G EL V A E + PSE+
Sbjct: 70 ALGALDGILLDGHELQVQLAHCACPLELCQGPSEL 104
>gi|332870653|ref|XP_003319031.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 1 [Pan troglodytes]
Length = 497
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DGRRRPPASSRN 102
>gi|332870651|ref|XP_003319030.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 2 [Pan troglodytes]
Length = 460
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DGRRRPPASSRN 102
>gi|363744745|ref|XP_003643117.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gallus gallus]
Length = 366
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L E+L+ FG G ++ L RD TG+ G+GFV Y+DP
Sbjct: 39 GNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPK 98
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 99 DAEKAINTLNGLRLQTKTIKVSYA 122
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 284 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 343
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 344 LNGYRLGDRVLQVSF 358
>gi|114691683|ref|XP_001135255.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 4 [Pan troglodytes]
gi|332870660|ref|XP_003319033.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 1 [Pan troglodytes]
Length = 497
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DGRRRPPASSRN 102
>gi|402860841|ref|XP_003894827.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Papio
anubis]
Length = 391
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDQKINKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|2625130|gb|AAB86639.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
Length = 388
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVEQATK 86
>gi|332870649|ref|XP_003319029.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 1 [Pan troglodytes]
Length = 506
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DGRRRPPASSRN 102
>gi|224082127|ref|XP_002306575.1| predicted protein [Populus trichocarpa]
gi|222856024|gb|EEE93571.1| predicted protein [Populus trichocarpa]
Length = 101
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYAEEAQKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG ++ GRE+ V FA+
Sbjct: 77 LDGRVVDGREIMVQFAK 93
>gi|332870655|ref|XP_003319032.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 2 [Pan troglodytes]
Length = 460
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DGRRRPPASSRN 102
>gi|332870664|ref|XP_003319035.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 3 [Pan troglodytes]
Length = 460
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DGRRRPPASSRN 102
>gi|453086560|gb|EMF14602.1| multiple RNA-binding domain-containing protein 1 [Mycosphaerella
populorum SO2202]
Length = 828
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL +D EDL F FG L+ I++P D TG +GF +VQY DP A A
Sbjct: 308 LFVRNLSYDVSYEDLEAEFSSFGNLEQIHIPLDKTTGSSKGFAYVQYTDPDSAEKALVDR 367
Query: 100 DGYLLLGRELTVVFAEENRK 119
DG GR + ++ A R+
Sbjct: 368 DGRTFQGRLIHILPATAKRE 387
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
++++NL + +D+R FG++G+L+ + +P+ G RGF F + +A A +
Sbjct: 704 VIIKNLPFEATKKDVRALFGEYGQLRSVRVPKKMDRG-ARGFAFADFTTVKEAQSAMDAL 762
Query: 100 DGYLLLGRELTVVFAEEN 117
LLGR L + FAEE+
Sbjct: 763 KDTHLLGRRLVLDFAEED 780
>gi|428221461|ref|YP_007105631.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
gi|427994801|gb|AFY73496.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
Length = 101
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D +D+ F ++G +K + LP D TG RGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYDVTQQDISNIFAEYGGVKRVQLPTDRETGRMRGFGFVEMNTDAEEEAAISA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG +GR+L V N+ KP E RA
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREERA 84
>gi|47225636|emb|CAG07979.1| unnamed protein product [Tetraodon nigroviridis]
Length = 382
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 22 SPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF 81
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G+
Sbjct: 30 CPSPM-QTGPTNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 88
Query: 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
GFV YIDP DA A ++G L + + V +A
Sbjct: 89 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 121
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 300 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 359
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 360 LNGYRLGDRVLQVSFKTNKTHK 381
>gi|452822795|gb|EME29811.1| splicing factor, arginine/serine-rich 2 [Galdieria sulphuraria]
Length = 211
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ P DL F ++G + D Y+PR+ G RGF FV++ DA A
Sbjct: 28 SLLVLNISFRTTPNDLTPLFDKYGEVVDCYIPRNRRNGHSRGFAFVRFRKEEDARKAMEE 87
Query: 99 MDGYLLLGRELTVVFAE 115
MDG + GR +TV FA+
Sbjct: 88 MDGREVDGRSITVQFAK 104
>gi|427720688|ref|YP_007068682.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427353124|gb|AFY35848.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 99
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL ++ + L G F ++G +K + LP D TG RGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYEVTQDGLSGVFAEYGSVKRVQLPTDRDTGRVRGFGFVEMGTDAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRY 143
+DG +GR+L V N+ KP E R+ S+DG R +
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREDRS------SFDGNRGNSSF 95
>gi|209527224|ref|ZP_03275736.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376003288|ref|ZP_09781101.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|209492382|gb|EDZ92725.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375328318|emb|CCE16854.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
Length = 93
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D P+DL F Q+G +K +P D TG RGFGFV+ ++ + A
Sbjct: 2 SIYVGNLSYDVTPDDLSEVFAQYGTVKRSMIPTDRETGRSRGFGFVEMVNEDEETKAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE-MRARERFSRSY 134
+DG +GR L V N+ +P E + R F R Y
Sbjct: 62 LDGAEWMGRSLKV-----NKARPRENNKQRGGFKRDY 93
>gi|223993321|ref|XP_002286344.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977659|gb|EED95985.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 140
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%)
Query: 54 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
LR F FG ++ I +P DY G +GF F+++++ DA +A Y+MDG L G+ LTV
Sbjct: 27 LRAAFLPFGPIQHIDMPMDYAAGTHKGFAFLEFVEADDANEAIYNMDGSELFGKSLTVNV 86
Query: 114 AEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPP 164
A+ + K +A + + +G R D P
Sbjct: 87 AQAEKMKLGSSKAVWSTEEWFKEQAGVKEDEEKQEKLKGEERDADMLKEKP 137
>gi|26342521|dbj|BAC25110.1| unnamed protein product [Mus musculus]
Length = 69
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 86
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQY
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQY 58
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
RD + V NL D EDL+ F +FG + D +LP D Y G RGFGF+Q D D+
Sbjct: 192 RDEGAKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVD-YDGNARGFGFIQMSDE-DSL 249
Query: 94 DAKYHMDGYLLLGRELTV 111
A M+G GR L V
Sbjct: 250 KAIEGMNGVEFDGRTLNV 267
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 3 GRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFG 62
GR+ + + S P+ G+R + +P+ T L V NL LR FG++G
Sbjct: 262 GRTLNVNKSLPK--GQRPAAAAPK----------ETKLYVGNLSWGTEEGALRELFGEYG 309
Query: 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115
+ D Y+P D TG+ RGF FV + P DA A DGY L GR L V A+
Sbjct: 310 SVIDCYIPTDRETGQHRGFAFVT-MGPDDALRAADETDGYELDGRILRVNEAQ 361
>gi|332226186|ref|XP_003262269.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 [Nomascus
leucogenys]
Length = 1033
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + L+ FG++GR+ +++L +D T + RGF F+ + PADA
Sbjct: 5 DRPEKLFIGGLSLKTDEKALKAEFGKYGRIIEVFLMKDRETNKSRGFAFIIFESPADANA 64
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A M+G L G+ + V A
Sbjct: 65 AARDMNGKYLDGKAIKVALA 84
>gi|328859425|gb|EGG08534.1| hypothetical protein MELLADRAFT_84729 [Melampsora larici-populina
98AG31]
Length = 649
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 9/109 (8%)
Query: 6 YSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTS---LLVRNLRHDCRPEDLRGPFGQFG 62
+ +P PP R Y +P PRG G + P S L V +L + +DLR F FG
Sbjct: 404 VTVAPPPP--VQRSYVAPKPRGP----GPNDPNSYARLYVGSLNFNLTDDDLRQVFQPFG 457
Query: 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111
++ + L RD TG+ +G+ FVQ+ + DA +A M+G+ L GR L V
Sbjct: 458 DIEYVDLHRDQITGKSKGYAFVQFKNMHDAKNAMEKMNGFQLAGRALRV 506
>gi|293346666|ref|XP_002726404.1| PREDICTED: RNA binding motif protein, X-linked-like 1 [Rattus
norvegicus]
Length = 441
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
M+G L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>gi|47086837|ref|NP_997763.1| RNA-binding motif protein, X chromosome [Danio rerio]
gi|82241461|sp|Q7ZWA3.1|RBMX_DANRE RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G
gi|29436819|gb|AAH49509.1| RNA binding motif protein, X-linked [Danio rerio]
gi|47846286|emb|CAG30733.1| RNA binding motif protein [Danio rerio]
gi|48735158|gb|AAH71326.1| RNA binding motif protein, X-linked [Danio rerio]
Length = 379
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F +FGR+ ++ L +D T + RGF FV Y +P DA D
Sbjct: 5 DRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AAREMNGKPLDGKPIKVEQATK 86
>gi|215820612|ref|NP_001135965.1| RNA binding motif protein 39 [Acyrthosiphon pisum]
Length = 501
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 26 RGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQ 85
R HYG P L V +L ++ E LRG F FG + +I L D TG +G+GF+
Sbjct: 232 RTHYG------PMKLYVGSLHYNITEEMLRGIFEPFGHVDNIQLMMDTETGRSKGYGFLT 285
Query: 86 YIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117
Y + DA A H++G+ + GR + V EN
Sbjct: 286 YRNAEDAKKALEHLNGFEIAGRPMKVGHVTEN 317
>gi|60416093|gb|AAH90711.1| Rbm19 protein, partial [Danio rerio]
Length = 802
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RN+ + C EDL+ F + G L ++ P D T +P+GF FV Y+ P +A A +
Sbjct: 401 LFIRNMPYTCTEEDLKEVFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460
Query: 100 DGYLLLGRELTVVFAEENRKKPSE 123
DG+ GR L V+ + ++K +
Sbjct: 461 DGHTFQGRVLHVMASRLKKEKADQ 484
Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ L+V+NL + + + R F FG L D L + G+ R FGFV + DA A
Sbjct: 2 SRLIVKNLPNGMKEDRFRKMFADFGTLTDCAL-KFTKDGKFRKFGFVGFKTEEDAQKALK 60
Query: 98 HMDGYLL----LGRELTVVFAEENRKKPSEMRARERFSR 132
H + + + EL F + N+ +P R+ S+
Sbjct: 61 HFNKSFVDTSRVTVELCTEFGDPNKARPWSKHTRQPSSK 99
>gi|115666403|ref|XP_802063.2| PREDICTED: ELAV-like protein 2-like isoform 7 [Strongylocentrotus
purpuratus]
Length = 367
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + ++++ FG+FG ++ L RD TG+ G+GFV Y+ PA
Sbjct: 31 GGDEDSKTNLIVNYLPQNMAQDEMKSLFGKFGEIESCKLVRDKLTGQSLGYGFVNYLKPA 90
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V FA
Sbjct: 91 DALKAVKTLNGLRLQCKTIKVSFA 114
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL DC L FG +G + ++ + RD +G+GFV ++ +A A
Sbjct: 285 CIFVYNLPADCEDGLLWQLFGPYGAVTNVKVVRDQPNQRCKGYGFVNMLNYDEALSAINT 344
Query: 99 MDGYLLLG-RELTVVFAEENRK 119
++GY L G R L V F +K
Sbjct: 345 LNGYQLNGKRTLQVSFKSSKQK 366
>gi|16332012|ref|NP_442740.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|383323755|ref|YP_005384609.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326924|ref|YP_005387778.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492808|ref|YP_005410485.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384438076|ref|YP_005652801.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|451816164|ref|YP_007452616.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|15214210|sp|Q57014.3|RBPA_SYNY3 RecName: Full=Putative RNA-binding protein RbpA
gi|1001324|dbj|BAA10811.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|1161274|gb|AAA85379.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|339275109|dbj|BAK51596.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|359273075|dbj|BAL30594.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276245|dbj|BAL33763.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279415|dbj|BAL36932.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407960353|dbj|BAM53593.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|451782133|gb|AGF53102.1| RNA binding protein [Synechocystis sp. PCC 6803]
Length = 101
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D DL F ++G +K + LP D TG RGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG +GR+L V N+ KP E R
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRENR 83
>gi|190337757|gb|AAI63877.1| RNA binding motif protein 19 [Danio rerio]
Length = 926
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RN+ + C EDL+ F + G L ++ P D T +P+GF FV Y+ P +A A +
Sbjct: 400 LFIRNMPYTCTEEDLKEVFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 459
Query: 100 DGYLLLGRELTVVFAEENRKKPSE 123
DG+ GR L V+ + ++K +
Sbjct: 460 DGHTFQGRVLHVMASRLKKEKADQ 483
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ +LVRN+ ++LR F FG LK + LP+ G RGFGF+ ++ DA A
Sbjct: 804 SKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFS 863
Query: 98 HM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 864 ALCHSTHLYGRRLVLEWAD 882
>gi|432906488|ref|XP_004077556.1| PREDICTED: nucleolysin TIAR-like [Oryzias latipes]
Length = 382
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L D ED+R F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 98 VFVGDLNPDISTEDVRAAFTPFGKISDARVVKDLTTGKSKGYGFVSFYNKLDAENAIVHM 157
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSR 132
G L GR++ +A RK P+ ++ S+
Sbjct: 158 AGQWLGGRQIRTNWA--TRKPPAPKSLQDSVSK 188
>gi|221042398|dbj|BAH12876.1| unnamed protein product [Homo sapiens]
Length = 332
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 4 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 63
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 64 KDAEKAINTLNGLRLQTKTIKVSYA 88
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 18 RRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71
+R+ + G G ++P + V NL D L FG FG + ++ + R
Sbjct: 223 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 282
Query: 72 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
D+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 283 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 324
>gi|75908205|ref|YP_322501.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|75701930|gb|ABA21606.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 109
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ + NL + EDL+ F ++G++ + LP D TG PRGF FV+ A A
Sbjct: 2 SIYIGNLSYQVTEEDLKLAFAEYGKVSRVQLPTDRETGRPRGFAFVEMETEAQETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG +GR+L V N+ KP E R+
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREERS 84
>gi|392347178|ref|XP_003749751.1| PREDICTED: RNA binding motif protein, X-linked-like 1 [Rattus
norvegicus]
Length = 446
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
M+G L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>gi|47939492|gb|AAH71575.1| FUSIP1 protein [Homo sapiens]
Length = 69
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 86
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQY
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQY 58
>gi|116790938|gb|ABK25797.1| unknown [Picea sitchensis]
Length = 300
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTSADDLFPLFDRYGKVVDIFIPRDKRTGDSRGFAFVRYKYADEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR + V FA+
Sbjct: 77 LDGRNVDGRNIMVQFAK 93
>gi|325189600|emb|CCA24085.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 358
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V N+ +D E LR F + G + + L D +G+P+G+GF +Y D A A A +
Sbjct: 16 SVFVGNIPYDVTEEMLREIFSEAGAVMNFRLVTDRDSGKPKGYGFCEYADGATALSAMRN 75
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGR 137
++GY + GR L V FA+ + + +A E+ + +G
Sbjct: 76 LNGYEINGRNLRVDFADGGERSSNPAQAVEKTAAGSNGE 114
>gi|49619013|gb|AAT68091.1| KIAA0682-like [Danio rerio]
Length = 927
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RN+ + C EDL+ F + G L ++ P D T +P+GF FV Y+ P +A A +
Sbjct: 401 LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460
Query: 100 DGYLLLGRELTVVFAEENRKKPSE 123
DG+ GR L V+ + ++K +
Sbjct: 461 DGHTFQGRVLHVMASRLKKEKADQ 484
Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ +LVRN+ ++LR F FG LK + LP+ G RGFGF+ ++ DA A
Sbjct: 805 SKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFS 864
Query: 98 HM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 865 ALCHSTHLYGRRLVLEWAD 883
>gi|443326242|ref|ZP_21054903.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
gi|442794168|gb|ELS03594.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
Length = 101
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V N+ + EDL G F +G +K +YLP D +G RGFGFV+ + A+ A
Sbjct: 2 SIYVGNIPYKVTEEDLSGVFADYGTVKRVYLPTDRESGRMRGFGFVEMANEAEEDKAIET 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GREL V N+ +P E
Sbjct: 62 LDGAEWMGRELRV-----NKARPRE 81
>gi|330920965|ref|XP_003299224.1| hypothetical protein PTT_10174 [Pyrenophora teres f. teres 0-1]
gi|311327182|gb|EFQ92678.1| hypothetical protein PTT_10174 [Pyrenophora teres f. teres 0-1]
Length = 570
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYH 98
L V N+ DLR F FG L+ + L RD G +G+GFVQ++DPA A +A
Sbjct: 279 LYVGNIHFSVTEGDLRDIFEPFGALEQVILQRDEANPGRSKGYGFVQFVDPAHAKNALAE 338
Query: 99 MDGYLLLGRELTV 111
M+G+ L GR++ V
Sbjct: 339 MNGFELAGRQIRV 351
>gi|4098580|gb|AAD00327.1| RBM1 [Macropus eugenii]
Length = 402
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
P +L + L +DL FG++G + + L +D T + RGF FV + PA A DA
Sbjct: 5 CPGTLFIGGLNVGTNEKDLESVFGKYGHIVKVLLMKDQETNKSRGFAFVTFESPAAAKDA 64
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPS 122
M+G L G+ + V E KPS
Sbjct: 65 ARDMNGKALDGKSIKV----EQANKPS 87
>gi|323455941|gb|EGB11808.1| hypothetical protein AURANDRAFT_9375, partial [Aureococcus
anophagefferens]
Length = 79
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V N+ D +DL G FG +G++ D +LP + TG PRGF FV + PA+A A +
Sbjct: 4 LYVGNISFDMTQQDLNGLFGPYGKVTDAFLPTERETGRPRGFAFVTFSSPAEAQAAIADL 63
Query: 100 DGYLLLGRELTV 111
DG + GR L V
Sbjct: 64 DGKEIDGRALRV 75
>gi|254410375|ref|ZP_05024154.1| RNA-binding protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196182581|gb|EDX77566.1| RNA-binding protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 103
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ + NL +D ED+ F ++G +K + LP D TG RGFGFV+ A+ + A
Sbjct: 2 SIYIGNLSYDATEEDITSIFAEYGTVKRVQLPTDRETGRMRGFGFVEMDSEAEESAAIDA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ KP E
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRE 81
>gi|1666299|emb|CAA63557.1| RNA-binding protein [Anabaena variabilis]
Length = 102
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL ++ DL+G F ++G +K + +P+D TG PRGF FV+ A+ A
Sbjct: 2 SIYVGNLSYEVTENDLKGVFAEYGTVKRVQVPQDRETGRPRGFAFVEMGTDAEEDAAIEG 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ KP E
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPKE 81
>gi|390360288|ref|XP_003729672.1| PREDICTED: ELAV-like protein 2-like [Strongylocentrotus purpuratus]
Length = 385
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + ++++ FG+FG ++ L RD TG+ G+GFV Y+ PA
Sbjct: 31 GGDEDSKTNLIVNYLPQNMAQDEMKSLFGKFGEIESCKLVRDKLTGQSLGYGFVNYLKPA 90
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V FA
Sbjct: 91 DALKAVKTLNGLRLQCKTIKVSFA 114
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL DC L FG +G + ++ + RD +G+GFV ++ +A A
Sbjct: 303 CIFVYNLPADCEDGLLWQLFGPYGAVTNVKVVRDQPNQRCKGYGFVNMLNYDEALSAINT 362
Query: 99 MDGYLLLG-RELTVVFAEENRK 119
++GY L G R L V F +K
Sbjct: 363 LNGYQLNGKRTLQVSFKSSKQK 384
>gi|357134837|ref|XP_003569022.1| PREDICTED: uncharacterized protein LOC100826232 [Brachypodium
distachyon]
Length = 335
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 26/161 (16%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L R DL F ++GR++++ L RDY F++Y DP DA DA+Y++
Sbjct: 13 LYVGRLSSRTRTRDLEYLFSRYGRIREVELKRDY--------AFIEYSDPRDADDAQYNL 64
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS------PHYARGY 153
DG + G + V FA+ + P R RE Y GR PP R H+AR
Sbjct: 65 DGRDVDGSRIIVEFAKGIPRGPGGSRERE-----YMGRGPPPGTGRCFNCGIDGHWARD- 118
Query: 154 SRSPDYYSPPPR---RGRDSRSI--SPRYRRYRERSYSRSP 189
++ D+ + R RG R+ SPR R RERSYSRSP
Sbjct: 119 CKAGDWKNKCYRCGERGHIERNCQNSPRSLR-RERSYSRSP 158
>gi|113478076|ref|YP_724137.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110169124|gb|ABG53664.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 97
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D EDL F ++G +K + LP D TG PRGFGFV+ + A
Sbjct: 2 SIYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAIDA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+D +GR++ V N+ KP E R
Sbjct: 62 LDSAEWMGRDIKV-----NKAKPREER 83
>gi|448878425|gb|AGE46175.1| arginine/serine-rich splicing factor SCL33 transcript III
[Physcomitrella patens subsp. patens]
Length = 95
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTG 76
PTSLLVRN+ DC +DLR PF ++G +KD+YLPRDYYTG
Sbjct: 55 PTSLLVRNIPRDCTADDLRIPFERYGVVKDVYLPRDYYTG 94
>gi|427418082|ref|ZP_18908265.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425760795|gb|EKV01648.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 98
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D ED+ F ++G +K +LP D TG PRGF FV+ A+ A
Sbjct: 2 SVYVGNLSYDATKEDVTDVFAEYGTVKSAHLPTDRETGRPRGFAFVEMETDAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR L V N+ KP E
Sbjct: 62 LDGAEWMGRVLKV-----NKAKPRE 81
>gi|281205759|gb|EFA79948.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 237
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 19 RYRSPSPRGHYG-GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE 77
+Y PS RG Y ++P SL+V NL + +DLR FG+FG ++ + +P+ G+
Sbjct: 137 KYVLPSQRGGYSPASPIEVP-SLIVSNLSENANEKDLRELFGRFGMVQKVNVPKQ-NDGK 194
Query: 78 PRGFGFVQYIDPADAADAKYHMDG----YLLL 105
PRGF +V Y D +A H+DG YL+L
Sbjct: 195 PRGFAYVTYADLKSTEEAIKHLDGHRYDYLVL 226
>gi|448878409|gb|AGE46167.1| arginine/serine-rich splicing factor SC39 transcript I
[Physcomitrella patens subsp. patens]
Length = 340
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TGE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTSADDLYPLFDRYGKVVDIFIPRDRRTGESRGFAFVRYKYSDEAQKAIER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR + V A+
Sbjct: 77 LDGRAVDGRNIVVQSAK 93
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 9 SPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIY 68
+P PPRD R+ R +P+ T+L + NL + +++R F Q+G+L +
Sbjct: 259 TPKPPRDGNRQGRKEAPQSAP-------TTTLFLGNLSFNVTEDEIRESFSQYGQLVSVR 311
Query: 69 LPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109
P D TG +GFG+V+Y D A A ++G + GR L
Sbjct: 312 FPTDRDTGAFKGFGYVEYGDVETAQKAVEGLNGVEIAGRSL 352
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
+ +++ V NL + E L F G ++ + D TG +GFG+V + + ADA A
Sbjct: 181 VNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTF-ESADALTA 239
Query: 96 KYHMDGYLLLGRELTV 111
+ G L GRE+ V
Sbjct: 240 AMALTGTELDGREIRV 255
>gi|218192960|gb|EEC75387.1| hypothetical protein OsI_11855 [Oryza sativa Indica Group]
Length = 218
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F + G + DI +PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNVSFRTTADDLLALFDRCGEVLDIRIPRDRRTGDSRGFAFVRYKYEDEAQKAVDK 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR++ V FA+
Sbjct: 77 LDGRTVDGRDIMVQFAK 93
>gi|47219575|emb|CAG02281.1| unnamed protein product [Tetraodon nigroviridis]
Length = 351
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV Y+DP DA
Sbjct: 2 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 61
Query: 94 DAKYHMDGYLLLGRELTVVFA 114
A ++G L + + V +A
Sbjct: 62 KAINTLNGLRLQTKTIKVSYA 82
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 269 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIAS 328
Query: 99 MDGYLLLGRELTVVFAEENRKK 120
++GY L R L V F K
Sbjct: 329 LNGYRLGDRVLQVSFKTNKTHK 350
>gi|356517718|ref|XP_003527533.1| PREDICTED: uncharacterized protein LOC100814914 [Glycine max]
Length = 273
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V N+ + DL F FGR+ + + +D +T RG FVQ++ DA DA
Sbjct: 64 TLYVSNIDYSLTNSDLHTLFSTFGRVARVTVLKDRHTRLSRGVAFVQFVSRHDAHDAAAQ 123
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GR L A +N + P +R R
Sbjct: 124 MDGKVLNGRTLAASIAADNGRAPEFIRKR 152
>gi|428313428|ref|YP_007124405.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428255040|gb|AFZ20999.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 93
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + EDL F ++G +K + +P D TG RGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYQVTSEDLSSVFAEYGTVKRVQIPTDRETGRSRGFGFVEMETEAEEDAAIQE 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+DG +GR L V N+ KP E + R
Sbjct: 62 LDGAEWMGRSLKV-----NKAKPREDQKR 85
>gi|312091340|ref|XP_003146943.1| hypothetical protein LOAG_11374 [Loa loa]
Length = 620
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + C EDLR F ++G + D+ + TG+ +GF V Y+ P A A +
Sbjct: 280 LFVRNLPYVCSDEDLRYLFKKYGEISDLQVIISKKTGQCKGFAIVTYVFPESAVAAFSAL 339
Query: 100 DGYLLLGRELTVVFAEENRK 119
DG +L GR L ++ EE R+
Sbjct: 340 DGSILKGRMLHILPGEEKRE 359
>gi|182412766|ref|YP_001817832.1| RNP-1 like RNA-binding protein [Opitutus terrae PB90-1]
gi|177839980|gb|ACB74232.1| RNP-1 like RNA-binding protein [Opitutus terrae PB90-1]
Length = 117
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V NL E+LR FGQFG + D+Y+ D TG PRGF FV +A A +
Sbjct: 6 LYVGNLSFKTTEEELRSAFGQFGSVTDVYVAMDKMTGRPRGFAFVTMGTAEEAKAAAEKL 65
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMR 125
+G L GR+LTV N +P E R
Sbjct: 66 NGTDLGGRQLTV-----NEARPKEER 86
>gi|34303937|ref|NP_689798.1| RNA-binding motif protein, Y chromosome, family 1 member F/J [Homo
sapiens]
gi|56090529|ref|NP_001006117.2| RNA-binding motif protein, Y chromosome, family 1 member F/J [Homo
sapiens]
gi|166199747|sp|Q15415.2|RBY1F_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member F/J; AltName: Full=Y chromosome RNA recognition
motif 2
gi|20987385|gb|AAH30018.1| RNA binding motif protein, Y-linked, family 1, member F [Homo
sapiens]
gi|123980592|gb|ABM82125.1| RNA binding motif protein, Y-linked, family 1, member F [synthetic
construct]
gi|123995413|gb|ABM85308.1| RNA binding motif protein, Y-linked, family 1, member F [synthetic
construct]
gi|151555057|gb|AAI48577.1| RNA binding motif protein, Y-linked, family 1, member J [synthetic
construct]
gi|187956669|gb|AAI52393.1| RBMY1F protein [Homo sapiens]
gi|189069331|dbj|BAG36363.1| unnamed protein product [Homo sapiens]
gi|208967362|dbj|BAG73695.1| RNA binding motif protein, Y-linked, family 1, member F [synthetic
construct]
Length = 496
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGTSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|282896319|ref|ZP_06304341.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
gi|281198815|gb|EFA73694.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
Length = 104
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D EDL+ F ++G + + LP D TG PRGFGFV+ + A+ A
Sbjct: 2 SIYVGNLSYDVTLEDLKSAFSKYGNVSKVQLPTDRETGRPRGFGFVEMSNEAEENAAIDA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
++G GR+L V N+ +P E R
Sbjct: 62 LNGKEFKGRQLKV-----NKARPREER 83
>gi|187955032|gb|AAI46854.1| RNA binding motif protein, Y-linked, family 1, member A1 [Homo
sapiens]
gi|219841952|gb|AAI44578.1| RNA binding motif protein, Y-linked, family 1, member B [Homo
sapiens]
Length = 496
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGTSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|392588092|gb|EIW77425.1| translation initiation factor eIF3g [Coniophora puteana RWD-64-598
SS2]
Length = 298
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
GRG DLPT L V N+ D + DLR FG+FGR+ +Y+ RD TG +GF FV + + A
Sbjct: 209 GRGDDLPT-LRVTNISEDTQENDLRDLFGRFGRVARVYVGRDRETGAGKGFAFVSFEERA 267
Query: 91 DAADA--KYHMDGY--LLL 105
A A K H GY L+L
Sbjct: 268 VAQKAMEKVHGMGYDNLIL 286
>gi|428214099|ref|YP_007087243.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
gi|428002480|gb|AFY83323.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
Length = 104
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL ++ EDL F ++G ++ ++LP D TG PRGF FV+ + A
Sbjct: 2 SIYVGNLSYEVTQEDLTAVFAEYGSVQRVHLPTDRETGRPRGFAFVEMKSETEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR++ V N+ KP E
Sbjct: 62 LDGAEWMGRDMKV-----NKAKPRE 81
>gi|219519651|gb|AAI44423.1| Unknown (protein for MGC:177960) [Homo sapiens]
Length = 459
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGTSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|428175470|gb|EKX44360.1| hypothetical protein GUITHDRAFT_50524, partial [Guillardia theta
CCMP2712]
Length = 81
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L + + LR F FG L D+ +P D TG+ RGFGFV+Y P DAA+A ++
Sbjct: 3 TLYVGGLDEEVNVDTLRAAFIPFGELVDVNIPLDNETGKHRGFGFVEYEFPDDAAEAIFN 62
Query: 99 MDGYLLLGRELTVVFA 114
M+ L GR L+V A
Sbjct: 63 MNNGELNGRVLSVNLA 78
>gi|427417097|ref|ZP_18907280.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425759810|gb|EKV00663.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 91
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D ED+ F ++G ++ ++LP D TG PRGF FV+ + A
Sbjct: 2 SIYVGNLSYDATQEDINAVFAEYGTVQRVHLPTDRETGRPRGFAFVEMSSEDEETSAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG +GR+L V N+ +P E R
Sbjct: 62 LDGAEWMGRDLRV-----NKARPREQR 83
>gi|401419086|ref|XP_003874033.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490267|emb|CBZ25527.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 342
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D +LLVR L H R F FG + + RD +TGE RGFGFV++ ADAA
Sbjct: 21 DSKLNLLVRFLDHGVDDSQFRAFFEPFGEITSSMVMRDIFTGESRGFGFVRFARSADAAR 80
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
A DG L G+ + V++A++ + R + ++ +
Sbjct: 81 ALRECDGKRLGGKAVNVIWAKQQHDDTPAGQERLKMNKLF 120
>gi|108708538|gb|ABF96333.1| Arginine/serine-rich splicing factor, putative, expressed [Oryza
sativa Japonica Group]
Length = 206
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F + G + DI +PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNVSFRTTADDLLALFDRCGEVLDIRIPRDRRTGDSRGFAFVRYKYEDEAQKAVDK 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR++ V FA+
Sbjct: 77 LDGRTVDGRDIMVQFAK 93
>gi|47225325|emb|CAG09825.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + P+DA D
Sbjct: 5 DRPGKLFIGGLNTETTEKALEQFFSKYGRIAEVILMKDRETNKSRGFAFVTFESPSDAKD 64
Query: 95 AKYHMDGYLLLGRELTV------VFAEENRKKPSEMRARER 129
A M+G L G+ + V F R+ P M +R R
Sbjct: 65 AAREMNGKSLDGKNIKVEQATKPQFESGGRRGPPPMHSRSR 105
>gi|254410328|ref|ZP_05024107.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
gi|196182534|gb|EDX77519.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
Length = 95
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D EDL F +G +K + LP D TG PRGFGFV+ + A
Sbjct: 2 SIYVGNLSYDVTAEDLSAVFADYGAVKRVQLPTDRETGRPRGFGFVEMETDDEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+DG +GR + V N+ +P E R R
Sbjct: 62 LDGAEWMGRNMKV-----NKARPRENRGGNR 87
>gi|6474847|dbj|BAA87307.1| Hypothetical protein YPR112c [Schizosaccharomyces pombe]
Length = 160
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RNL + C +DL+ FG FG+L+ +++P D T P+GF ++ + D DA A +
Sbjct: 22 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 81
Query: 100 DGYLLLGRELTVV 112
D GR L V+
Sbjct: 82 DAKPFQGRLLHVL 94
>gi|68073969|ref|XP_678899.1| splicing factor [Plasmodium berghei strain ANKA]
gi|56499509|emb|CAH94054.1| splicing factor, putative [Plasmodium berghei]
Length = 535
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 17 GRRYRSPSPRGHYGGRGRDLPTSLLVRNLR---HDCRPEDLRGPFGQFGRLKDIYLPRDY 73
+ R+ H+ D+P L + L + ++L+ F FG + D+ + RD
Sbjct: 233 AEKNRAAKATKHHPIDPNDIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDP 292
Query: 74 YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENR 118
YTG+ +GFGF+Q+ ++A +A M+G + GRE+ V +A++++
Sbjct: 293 YTGKSKGFGFIQFHKASEAIEAMTVMNGMEVAGREIKVSYAQDSK 337
>gi|410060051|ref|XP_003949287.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
A1-like [Pan troglodytes]
Length = 184
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQ---------SDGRRRPPASSRN 102
>gi|410927510|ref|XP_003977185.1| PREDICTED: ELAV-like protein 1-like [Takifugu rubripes]
Length = 341
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
GG G+D T+L+V L + E+LR F G ++ L RD G G+GFV Y+ P
Sbjct: 27 GGEGKDAKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKIAGHSLGYGFVNYVTP 86
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
+DA A ++G L + + V +A
Sbjct: 87 SDAERAINTLNGLRLQSKNIKVSYA 111
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 12 PPRDYGRRYR-SPSPRGHYGGRG-RDLPTS------LLVRNLRHDCRPEDLRGPFGQFGR 63
P +R+R SP H GG G +PT+ + + NL + L FG FG
Sbjct: 225 PLHHQAQRFRFSPMSVDHMGGVGGVSVPTNSNNGWCIFIYNLGQEADETILWQMFGPFGA 284
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
+ ++ + RD+ T + +GFGFV + DAA A ++GY L + L V F
Sbjct: 285 VTNVKVIRDFTTNKCKGFGFVTMSNYEDAAMAIASLNGYRLGEKILQVSF 334
>gi|410913465|ref|XP_003970209.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 2
[Takifugu rubripes]
Length = 383
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + P+DA D
Sbjct: 5 DRPGKLFIGGLNTETTEKALEQFFSKYGRIAEVLLMKDRETNKSRGFAFVTFESPSDAKD 64
Query: 95 AKYHMDGYLLLGRELTV------VFAEENRKKPSEMRARER 129
A M+G L G+ + V F R+ P M +R R
Sbjct: 65 AAREMNGKSLDGKNIKVEQATKPQFESGGRRGPPPMHSRSR 105
>gi|432874359|ref|XP_004072458.1| PREDICTED: probable RNA-binding protein 19-like [Oryzias latipes]
Length = 921
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + C ED+R F + G L ++ P D T +P+GF FV Y+ P +A A +
Sbjct: 400 LFVRNLPYTCTEEDIRELFSKHGPLSEVLFPIDNLTKKPKGFAFVTYMIPENAVTALAQL 459
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRR 138
D ++ GR L ++ + ++ P A S SY ++
Sbjct: 460 DRHVFQGRMLHLLPSTVKKENPESSDAGGPGSSSYKRQK 498
Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAK 96
+ +LVRN+ ++R F FG LK + LP+ +G RGFGFV +I DA A
Sbjct: 798 SKILVRNVPFQATVREIRELFCTFGELKTVRLPKKAAGSGNHRGFGFVDFITKQDAKKAF 857
Query: 97 YHM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 858 AALCHSTHLYGRRLVLEWAD 877
>gi|54633344|ref|NP_001006121.1| RNA-binding motif protein, Y chromosome, family 1 member B [Homo
sapiens]
gi|190360159|sp|A6NDE4.2|RBY1B_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member B
Length = 496
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|115453325|ref|NP_001050263.1| Os03g0388000 [Oryza sativa Japonica Group]
gi|50582745|gb|AAT78815.1| putative splicing factor (having alternative splicing products)
[Oryza sativa Japonica Group]
gi|108708536|gb|ABF96331.1| Arginine/serine-rich splicing factor, putative, expressed [Oryza
sativa Japonica Group]
gi|113548734|dbj|BAF12177.1| Os03g0388000 [Oryza sativa Japonica Group]
gi|222625042|gb|EEE59174.1| hypothetical protein OsJ_11097 [Oryza sativa Japonica Group]
Length = 205
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F + G + DI +PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNVSFRTTADDLLALFDRCGEVLDIRIPRDRRTGDSRGFAFVRYKYEDEAQKAVDK 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR++ V FA+
Sbjct: 77 LDGRTVDGRDIMVQFAK 93
>gi|351705539|gb|EHB08458.1| Heterogeneous nuclear ribonucleoprotein G [Heterocephalus glaber]
Length = 326
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF V + PADA +
Sbjct: 5 DCPGKLFIGGLNTETNEKALEAVFGKYGRIMEVLLMKDQETNKSRGFAIVTFESPADAKE 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 ATRDMNGKSLDGKAIKVEQATK 86
>gi|428203095|ref|YP_007081684.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
gi|427980527|gb|AFY78127.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
Length = 99
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL ++ EDL F ++G + + +P D TG PRGF FV+ A+ A
Sbjct: 2 SIYVGNLSYEVTQEDLERVFKEYGTVNRVQMPTDRETGRPRGFAFVEMGTEAEETTAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY-DGRRSPPRY 143
+DG +GR+L V N+ KP E R S S+ + RRS RY
Sbjct: 62 LDGAQWMGRDLKV-----NKAKPREERGS---SGSWGNNRRSNRRY 99
>gi|428773895|ref|YP_007165683.1| RNP-1 like RNA-binding protein [Cyanobacterium stanieri PCC 7202]
gi|428688174|gb|AFZ48034.1| RNP-1 like RNA-binding protein [Cyanobacterium stanieri PCC 7202]
Length = 90
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D EDL+ F +G++K +YLP D T RGFGFV+ ++ A
Sbjct: 2 SIYVGNLSYDVTEEDLQTVFSDYGQVKRVYLPVDRETKRMRGFGFVEMSSDSEEETAIET 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR++ V N+ KP E
Sbjct: 62 LDGAQWMGRQMKV-----NKAKPRE 81
>gi|223461509|gb|AAI40759.1| Unknown (protein for MGC:176435) [Homo sapiens]
Length = 459
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|324510588|gb|ADY44428.1| RNA-binding protein with serine-rich domain 1-B [Ascaris suum]
Length = 361
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRD-YYTGEPRGFGFVQYIDPADAADAKYH 98
L VRNL + E L FG +G LK +P D +T RG+G+V++ DA A H
Sbjct: 220 LCVRNLSRNVTKEHLAEIFGVYGALKSCEMPMDRQHTHLGRGYGYVEFESADDADKALKH 279
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYSRSPD 158
MDG + G+E+T + R S R SPPRY RG SP
Sbjct: 280 MDGGQIDGQEITCELTHQPRTAISNGGGRRVL--------SPPRY-------RGG--SPR 322
Query: 159 YYSPPPRRGRDS 170
Y PPR GR +
Sbjct: 323 RYRSPPRGGRGT 334
>gi|428305785|ref|YP_007142610.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428247320|gb|AFZ13100.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 102
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D + DL F ++G +K + LP D TG PRGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYDVKEGDLSHIFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSDAEEDAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG + R+L V N+ KP E R+
Sbjct: 62 LDGAEWMERDLKV-----NKAKPREERS 84
>gi|56090533|ref|NP_001006120.2| RNA-binding motif protein, Y chromosome, family 1 member D [Homo
sapiens]
gi|190360153|sp|P0C7P1.1|RBY1D_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member D
Length = 496
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|340383730|ref|XP_003390369.1| PREDICTED: hypothetical protein LOC100640053 [Amphimedon
queenslandica]
Length = 449
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
RSP+P+ PT + V L + L F FG++K+I LP D PRG
Sbjct: 304 RSPTPK----------PTKVFVGKLTRNVTKPHLNEVFSNFGKVKNIDLPLDRLNFLPRG 353
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G+V++ P +A A HMDG + G+++T+
Sbjct: 354 HGYVEFDTPDNATAAMKHMDGGWIDGQQVTIQLV 387
>gi|47124558|gb|AAH70298.1| RBMY1A1 protein [Homo sapiens]
gi|312151036|gb|ADQ32030.1| RNA binding motif protein, Y-linked, family 1, member A1 [synthetic
construct]
Length = 459
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|427706332|ref|YP_007048709.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427358837|gb|AFY41559.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 110
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + EDL+ F ++G++ + LP D TG PRGF FV+ + A
Sbjct: 2 SIYVGNLSYQVTEEDLKMAFSEYGKVSRVQLPTDRETGRPRGFAFVEMETESQETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG +GR+L V N+ KP E R+
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREERS 84
>gi|410913463|ref|XP_003970208.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Takifugu rubripes]
Length = 391
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + P+DA D
Sbjct: 5 DRPGKLFIGGLNTETTEKALEQFFSKYGRIAEVLLMKDRETNKSRGFAFVTFESPSDAKD 64
Query: 95 AKYHMDGYLLLGRELTV------VFAEENRKKPSEMRARER 129
A M+G L G+ + V F R+ P M +R R
Sbjct: 65 AAREMNGKSLDGKNIKVEQATKPQFESGGRRGPPPMHSRSR 105
>gi|4826974|ref|NP_005049.1| RNA-binding motif protein, Y chromosome, family 1 member A1 [Homo
sapiens]
gi|378522864|sp|P0DJD3.1|RBY1A_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member A1; AltName: Full=RNA-binding motif protein 1;
AltName: Full=RNA-binding motif protein 2; AltName:
Full=Y chromosome RNA recognition motif 1; Short=hRBMY
gi|452367|emb|CAA53659.1| unnamed protein product [Homo sapiens]
Length = 496
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|340377347|ref|XP_003387191.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
G-like [Amphimedon queenslandica]
Length = 288
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 12 PPRDYGRRYRSPSPRGHYGGRGR-----------DLPTSLLVRNLRHDCRPEDLRGPFGQ 60
P R G +Y PS RG G G+ D ++ V NL D R DLR FG+
Sbjct: 169 PTRSSGGKYVPPSLRGSDGAGGKKGELMSHSRNDDEQAAVRVTNLSEDARESDLRELFGR 228
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----LLLGRE 108
FG ++ ++L +D T + +GF F+ + DA A +++G+ L+L E
Sbjct: 229 FGPIQRVFLAKDRKTQQSKGFAFIHFSSKEDAQSAITNLNGFGYDHLILKVE 280
>gi|219519661|gb|AAI44460.1| Unknown (protein for MGC:178002) [Homo sapiens]
gi|223460910|gb|AAI36863.1| RBMY1D protein [Homo sapiens]
Length = 459
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|56090527|ref|NP_001006118.2| RNA-binding motif protein, Y chromosome, family 1 member E [Homo
sapiens]
gi|190360154|sp|A6NEQ0.1|RBY1E_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member E
gi|182888281|gb|AAI60023.1| RNA binding motif protein, Y-linked, family 1, member E [synthetic
construct]
Length = 496
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>gi|126660168|ref|ZP_01731286.1| RNA binding protein [Cyanothece sp. CCY0110]
gi|126618533|gb|EAZ89284.1| RNA binding protein [Cyanothece sp. CCY0110]
Length = 98
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
++ V NL +D EDL F ++G +K + LP D TG PRGFGFV+ + A
Sbjct: 2 TIYVGNLVYDVTSEDLTEVFSEYGTVKRVSLPTDRETGRPRGFGFVEMESDDEETAAIET 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+DG +GR++ V N+ KP E R
Sbjct: 62 LDGADWMGRQMRV-----NKAKPRENSGR 85
>gi|291384550|ref|XP_002708825.1| PREDICTED: RNA binding motif protein, X-linked-like [Oryctolagus
cuniculus]
Length = 359
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNPETDEKALEAAFGKYGRIIEVLLMKDRETSKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A M+G L G+ + V A
Sbjct: 65 AARDMNGKSLDGKAIKVAQA 84
>gi|390480268|ref|XP_002763353.2| PREDICTED: RNA-binding motif protein, X chromosome-like [Callithrix
jacchus]
Length = 156
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>gi|428779944|ref|YP_007171730.1| RRM domain-containing RNA-binding protein [Dactylococcopsis salina
PCC 8305]
gi|428694223|gb|AFZ50373.1| RRM domain-containing RNA-binding protein [Dactylococcopsis salina
PCC 8305]
Length = 95
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + +DL F ++G +K ++LP D TG RGFGFV+ + ++A
Sbjct: 2 SIYVGNLDYSVTQDDLSEVFAEYGTVKRVHLPTDRETGRMRGFGFVEMASETEESNAISE 61
Query: 99 MDGYLLLGRELTV 111
+DG +GREL V
Sbjct: 62 LDGAEWMGRELKV 74
>gi|146083790|ref|XP_001464836.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
gi|398013683|ref|XP_003860033.1| hypothetical protein, unknown function [Leishmania donovani]
gi|134068931|emb|CAM67072.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
gi|322498252|emb|CBZ33326.1| hypothetical protein, unknown function [Leishmania donovani]
Length = 342
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 28 HYGG--RGR-------DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 78
H GG RGR D +LLVR L H R F FG + + RD +TGE
Sbjct: 5 HNGGYHRGRPSVATAADSKLNLLVRFLDHGVDDSQFRVFFEPFGEITSSMVMRDIFTGES 64
Query: 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
RGFGFV++ ADAA A DG L G+ + V++A++ + R + ++ +
Sbjct: 65 RGFGFVRFARSADAARALRECDGKRLGGKAVNVIWAKQQHDDTPAGQERLKMNKLF 120
>gi|86608641|ref|YP_477403.1| RNA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557183|gb|ABD02140.1| putative RNA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 94
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
++ V NL EDLR F ++G +K I LP D TG RGF FV+ + AD A
Sbjct: 2 TIFVGNLSFKASEEDLRLVFAEYGTVKQIKLPVDRETGRKRGFAFVELENEADEQKAIDE 61
Query: 99 MDGYLLLGRELTV 111
+DG +GR+L V
Sbjct: 62 LDGATWMGRDLRV 74
>gi|432877561|ref|XP_004073160.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 2
[Oryzias latipes]
Length = 380
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTV------VFAEENRKKPSEMRARE-------RFSRSY-DGRRSP 140
A M+G L G+ + V F R+ P +R R SR G R P
Sbjct: 65 AAREMNGKSLDGKPIKVEQATKPQFESAGRRGPPSNYSRSRGPPRGPRGSRGGPSGMRGP 124
Query: 141 PRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISP 175
PR S P + SR P PP +RG R+ P
Sbjct: 125 PRGSGDPFFKGMSSRGP----PPLKRGPPLRNGGP 155
>gi|113475531|ref|YP_721592.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110166579|gb|ABG51119.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 89
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D EDL+ F ++G +K + +P D TG PRGF FV+ + A
Sbjct: 2 SVYVGNLSYDATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIEG 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L+GR L V N+ +P E R
Sbjct: 62 LDGSELMGRILKV-----NKARPREER 83
>gi|38707995|ref|NP_944597.1| probable RNA-binding protein 19 [Danio rerio]
gi|32450902|gb|AAP82506.1| nil per os [Danio rerio]
Length = 926
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RN+ + C EDL+ F + G L ++ P D T +P+GF FV Y+ P +A A +
Sbjct: 400 LFIRNMPYTCTEEDLKEVFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 459
Query: 100 DGYLLLGRELTVVFAEENRKKPSE 123
DG GR L V+ + ++K +
Sbjct: 460 DGQTFQGRVLHVMASRLKKEKADQ 483
Score = 43.9 bits (102), Expect = 0.045, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ +LVRN+ ++LR F FG LK + LP+ G RGFGF+ ++ DA A
Sbjct: 804 SKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFS 863
Query: 98 HM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 864 ALCHSTHLYGRRLVLEWAD 882
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ L+V+NL + + E R F FG L D L + G+ R FGFV + DA A
Sbjct: 2 SRLIVKNLPNGMKEERFRKMFADFGTLTDCAL-KFTKDGKFRKFGFVGFKTEEDAQKALK 60
Query: 98 HMDGYLL----LGRELTVVFAEENRKKPSEMRARERFSRSYDGRRS 139
H + + + EL F + N+ +P R+ + + +++
Sbjct: 61 HFNKSFVDTSRVTVELCTDFGDPNKARPWSKHTRQPSQKDTEEKKT 106
>gi|157867743|ref|XP_001682425.1| hypothetical protein LMJF_18_0190 [Leishmania major strain
Friedlin]
gi|68125879|emb|CAJ03478.1| hypothetical protein LMJF_18_0190 [Leishmania major strain
Friedlin]
Length = 342
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 28 HYGG--RGR-------DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 78
H GG RGR D +LLVR L H R F FG + + RD +TGE
Sbjct: 5 HNGGYHRGRPSVATAADSKLNLLVRFLDHGVDDSQFRVFFEPFGEITSSMVMRDIFTGES 64
Query: 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSY 134
RGFGFV++ ADAA A DG L G+ + V++A++ + R + ++ +
Sbjct: 65 RGFGFVRFARSADAARALRECDGKRLGGKAVNVIWAKQQHDDTPAGQERLKMNKLF 120
>gi|355687312|gb|EHH25896.1| hypothetical protein EGK_15753, partial [Macaca mulatta]
Length = 148
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 36 LPTS----LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
LP S L +RN ++ R +DL FG++ + D+Y+P D+YT PRG +VQ D D
Sbjct: 2 LPVSPKVPLFIRNGANNSRFKDLWHEFGRYDPIVDVYVPLDFYTHCPRGVAYVQLEDVRD 61
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A DA ++D + G ++ + + P++M+A+E
Sbjct: 62 AEDALPNLDRKWICGCQMRI------GRPPNQMKAKE 92
>gi|348671618|gb|EGZ11439.1| hypothetical protein PHYSODRAFT_435859 [Phytophthora sojae]
Length = 92
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V N+ ++LR F +FG + D+Y+PR + E RGF FV++++ DA DA
Sbjct: 8 TLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFMEKRDAEDAIEG 67
Query: 99 MDGYLLLGRELTVVFAEENR 118
M+G GR+L V FA++ R
Sbjct: 68 MEGQEFQGRDLRVQFAKQRR 87
>gi|297301957|ref|XP_001098541.2| PREDICTED: nucleolysin TIAR isoform 5 [Macaca mulatta]
Length = 506
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 230 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 289
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSR 132
G L GR++ +A RK P+ +E ++
Sbjct: 290 GGQWLGGRQIRTNWA--TRKPPAPKSTQENNTK 320
>gi|255582596|ref|XP_002532080.1| RNA binding motif protein, putative [Ricinus communis]
gi|223528250|gb|EEF30303.1| RNA binding motif protein, putative [Ricinus communis]
Length = 181
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T LLVRN+ + +DLR F FG++K + LP + G RGF FV+Y+ +A +A
Sbjct: 55 TKLLVRNVAFEATEKDLRQLFSPFGQIKRLRLPVKF--GNHRGFAFVEYVTKQEAQNALQ 112
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE--RFSRSYDGRRSPPRYSR 145
+ L GR L + A+E + E+RAR FS G +P + S+
Sbjct: 113 ALSSTHLYGRHLVLERAKEG-ESLEELRARTAAHFSDELSGMHNPAKVSK 161
>gi|413933821|gb|AFW68372.1| hypothetical protein ZEAMMB73_804558, partial [Zea mays]
Length = 138
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFS 131
MDG +LLGRE+ VVFAEENRKKPS+MRARE+ S
Sbjct: 1 MDGKMLLGREINVVFAEENRKKPSDMRAREKIS 33
>gi|452002199|gb|EMD94657.1| hypothetical protein COCHEDRAFT_1092247 [Cochliobolus
heterostrophus C5]
Length = 572
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYH 98
L V N+ +DL+ F FG L+ + L RD G +G+GFVQ++DP+ A +A
Sbjct: 280 LYVGNIHFSVTEKDLQEIFEPFGELEQVILQRDEMNPGRSKGYGFVQFVDPSHAKNALAE 339
Query: 99 MDGYLLLGRELTV 111
M+G+ L GR++ V
Sbjct: 340 MNGFELAGRQIRV 352
>gi|49658982|emb|CAE01482.1| HUR [Tetraodon nigroviridis]
Length = 325
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 28 HYGGR-GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 86
H GG G+D T+L+V L + E+LR F G ++ L RD G G+GFV Y
Sbjct: 8 HMGGEEGKDAKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 67
Query: 87 IDPADAADAKYHMDGYLLLGRELTVVFA 114
++P+DA A ++G L + + V +A
Sbjct: 68 VNPSDAERAISTLNGLRLQSKNIKVSYA 95
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 12 PPRDYGRRYR-SPSPRGHYGGRG-RDLPTS------LLVRNLRHDCRPEDLRGPFGQFGR 63
P +R+R SP H GG G +PTS + + NL + L FG FG
Sbjct: 209 PLHHQAQRFRFSPMGVDHMGGVGGVSVPTSSNNGWCIFIYNLGQEADETILWQMFGPFGA 268
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
+ ++ + RD+ T + +GFGFV + DAA A ++GY L + L V F
Sbjct: 269 VTNVKVIRDFNTNKCKGFGFVTMSNYEDAAMAIASLNGYRLGDKILQVSF 318
>gi|15228279|ref|NP_187651.1| small nuclear ribonucleoprotein 31 kDa protein [Arabidopsis
thaliana]
gi|12322795|gb|AAG51392.1|AC011560_24 hypothetical protein; 114721-113936 [Arabidopsis thaliana]
gi|54261729|gb|AAV31168.1| At3g10400 [Arabidopsis thaliana]
gi|61656137|gb|AAX49371.1| At3g10400 [Arabidopsis thaliana]
gi|332641379|gb|AEE74900.1| small nuclear ribonucleoprotein 31 kDa protein [Arabidopsis
thaliana]
Length = 261
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
++L V NL D+ F FG++ + + +D +T + RG FV Y+ DAA A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 98 HMDGYLLLGRELTVVFAEEN 117
MD +L GR+LTV A +N
Sbjct: 117 SMDAKILNGRKLTVSIAADN 136
>gi|451845251|gb|EMD58564.1| hypothetical protein COCSADRAFT_103344 [Cochliobolus sativus
ND90Pr]
Length = 569
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYH 98
L V N+ +DL+ F FG L+ + L RD G +G+GFVQ++DP+ A +A
Sbjct: 277 LYVGNIHFSVTEKDLQEIFEPFGELEQVILQRDEMNPGRSKGYGFVQFVDPSHAKNALAE 336
Query: 99 MDGYLLLGRELTV 111
M+G+ L GR++ V
Sbjct: 337 MNGFELAGRQIRV 349
>gi|301096303|ref|XP_002897249.1| mannitol dehydrogenase, putative [Phytophthora infestans T30-4]
gi|262107334|gb|EEY65386.1| mannitol dehydrogenase, putative [Phytophthora infestans T30-4]
Length = 543
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V N+ ++LR F +FG + D+Y+PR + E RGF FV++I+ DA DA
Sbjct: 358 TLKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFIEKRDAEDAIDG 417
Query: 99 MDGYLLLGRELTVVFAEENR 118
M+G GR+L V FA++ R
Sbjct: 418 MEGQEFQGRDLRVQFAKQRR 437
>gi|37595358|gb|AAQ94565.1| RNA binding motif protein [Danio rerio]
Length = 277
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F +FGR+ ++ L +D T + RGF FV Y +P+DA D
Sbjct: 5 DRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPSDAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AAREMNGKPLDGKPIKVEQATK 86
>gi|426245729|ref|XP_004016657.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Ovis
aries]
Length = 174
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L H+ + L FG++G + ++ L +D T + RGF F+ + PADA
Sbjct: 5 DRPGKLFIGGLNHETDEKSLEAAFGKYGHISEVLLMKDRETNKSRGFAFITFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A M+G L G+ + V A
Sbjct: 65 AVRDMNGKSLDGKAIKVAQA 84
>gi|336374814|gb|EGO03150.1| hypothetical protein SERLA73DRAFT_174588 [Serpula lacrymans var.
lacrymans S7.3]
gi|336387791|gb|EGO28935.1| hypothetical protein SERLADRAFT_456184 [Serpula lacrymans var.
lacrymans S7.9]
Length = 291
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 27 GHYGGRGR--DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 84
G GG G DLPT L V N+ D + DLR FG FGR+ +Y+ RD TG +GF FV
Sbjct: 196 GRAGGTGSRDDLPT-LRVTNISEDTQENDLRELFGGFGRVARVYVGRDRETGAGKGFAFV 254
Query: 85 QYIDPADAADA--KYHMDGY--LLL 105
+ D A A A K H GY L+L
Sbjct: 255 SFEDRAVAQKAMEKVHGKGYDNLIL 279
>gi|296411493|ref|XP_002835465.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629249|emb|CAZ79622.1| unnamed protein product [Tuber melanosporum]
Length = 289
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 20 YRSPSPRGHYGG-----------RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIY 68
Y +P RG G + RD +L V N+ DLR F +FGR+ ++
Sbjct: 181 YVAPHLRGKKGAGESMSGTGGSYKDRDDLATLRVTNVSEFAEESDLREMFERFGRVTRVF 240
Query: 69 LPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102
L +D TG +GF F+ Y+D +DAA A MDG+
Sbjct: 241 LAKDRDTGRAKGFAFISYVDRSDAAKACERMDGF 274
>gi|220906552|ref|YP_002481863.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219863163|gb|ACL43502.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 101
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ + NL + +DL FG++G +K ++LP D TG RGF FV+ + + A
Sbjct: 2 SIYIGNLSYTVTQDDLIQVFGEYGTVKSVHLPTDRETGRMRGFAFVEMENNNEEEAAIDA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRY 143
+DG +GR+L V N+ KP E R+ R S + +R+ RY
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREDRSASRGGWSSNQKRTSRRY 101
>gi|384252135|gb|EIE25612.1| hypothetical protein COCSUDRAFT_83619, partial [Coccomyxa
subellipsoidea C-169]
Length = 207
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%)
Query: 5 SYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64
S S S SP GR +PRG D ++ V NL H+ LR F ++GR+
Sbjct: 2 SASLSQSPRSRAGRSPDRETPRGGDADGREDTAGTIFVGNLNHETSERRLREFFEEYGRV 61
Query: 65 KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115
+ + TG +GFGFV++ D DA DA DG + GR + FA+
Sbjct: 62 LSTKVVFNPETGRSKGFGFVKFDDARDAEDAIKQADGQTMDGRTIKCNFAK 112
>gi|432113367|gb|ELK35779.1| Serine/arginine-rich splicing factor 2 [Myotis davidii]
Length = 218
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HM 99
M
Sbjct: 74 AM 75
>gi|115449133|ref|NP_001048346.1| Os02g0788300 [Oryza sativa Japonica Group]
gi|47497761|dbj|BAD19861.1| putative initiation factor 3g [Oryza sativa Japonica Group]
gi|113537877|dbj|BAF10260.1| Os02g0788300 [Oryza sativa Japonica Group]
gi|125541408|gb|EAY87803.1| hypothetical protein OsI_09222 [Oryza sativa Indica Group]
gi|125583953|gb|EAZ24884.1| hypothetical protein OsJ_08662 [Oryza sativa Japonica Group]
Length = 289
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 19 RYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 78
+Y P PR R R+ S+ V NL D R EDLR FG FG L Y+ D+ TGE
Sbjct: 190 KYVPPKPR-ESEMRRRNDENSVRVTNLSEDTREEDLRELFGSFGPLTRAYVALDHRTGES 248
Query: 79 RGFGFVQYIDPADAADAKYHMDGY----LLLGRE 108
RGFGF+ ++ DA A ++GY L+L E
Sbjct: 249 RGFGFLSFVYREDAERAIAKLNGYGYDSLILNVE 282
>gi|427731365|ref|YP_007077602.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427367284|gb|AFY50005.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 100
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D + L F ++G +K + LP D TG RGFGFV+ A+ A
Sbjct: 2 SVYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRVRGFGFVEMSSDAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG +GR+L V N+ KP E R
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPKEDR 83
>gi|358331785|dbj|GAA50546.1| serine/arginine-rich splicing factor 2 [Clonorchis sinensis]
Length = 340
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
SL V NL + EDLR F ++G + D+Y+PRD YT E RGF FV+Y +A A
Sbjct: 15 VSLKVDNLAYRTTIEDLRRVFSRYGEVGDVYIPRDPYTFESRGFAFVRYPTDREADSAIR 74
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
MDG + GRE+ V A+ R MR
Sbjct: 75 EMDGRRIDGREIRVQRAKYGRPNSRRMR 102
>gi|334120717|ref|ZP_08494795.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333455989|gb|EGK84627.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 110
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + ED+ F ++G +K ++LP D T PRGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYQVTQEDITTVFAEYGTVKRVHLPTDRETSRPRGFGFVEMSTDAEEDAAISA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ KP E
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRE 81
>gi|60098573|emb|CAH65117.1| hypothetical protein RCJMB04_3n1 [Gallus gallus]
Length = 621
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL EDL F ++G L +I+ P D T +P+GF F+ Y+ P A A M
Sbjct: 80 LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYAEM 139
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSP 147
DG + GR + ++ + + K ++ A E S SY ++ + S
Sbjct: 140 DGQVFQGRMMHLLPSTIKKLKIEDIDAEE--SSSYKKQKEAKDKANSA 185
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADA 95
+LVRN+ ++R F FG LK + LP+ TG RGFGFV ++ DA A
Sbjct: 497 ILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKA 553
>gi|428319314|ref|YP_007117196.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
gi|428242994|gb|AFZ08780.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
Length = 108
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + ED+ F ++G +K ++LP D T PRGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYQVTQEDITTVFAEYGTVKRVHLPTDRETSRPRGFGFVEMSTDAEEDAAISA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ KP E
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRE 81
>gi|302820371|ref|XP_002991853.1| hypothetical protein SELMODRAFT_134332 [Selaginella moellendorffii]
gi|302822709|ref|XP_002993011.1| hypothetical protein SELMODRAFT_136271 [Selaginella moellendorffii]
gi|300139211|gb|EFJ05957.1| hypothetical protein SELMODRAFT_136271 [Selaginella moellendorffii]
gi|300140391|gb|EFJ07115.1| hypothetical protein SELMODRAFT_134332 [Selaginella moellendorffii]
Length = 101
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD +GE RGF FV+Y +A A
Sbjct: 17 SLLVLNITFRTTADDLYPLFDRYGKVVDIFIPRDRRSGESRGFAFVRYKHVDEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAEENRK 119
+DG + GR++ V FA+ R
Sbjct: 77 LDGMTIDGRQIAVQFAKYGRN 97
>gi|427419212|ref|ZP_18909395.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425761925|gb|EKV02778.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 90
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D DL F +G +K ++LP D TG RGFGFV+ ++ A
Sbjct: 2 SIYVGNLSYDVTDADLTTAFAAYGTVKSVHLPTDRETGRMRGFGFVEMSTDSEEDAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG +GR+L V N+ KP E R
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRENR 83
>gi|198438021|ref|XP_002129706.1| PREDICTED: similar to cold inducible RNA binding protein [Ciona
intestinalis]
Length = 469
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + + L DC +DL FG FG + + + RD T RGF F+ + A +A
Sbjct: 6 LDARIFIGGLDLDCSEQDLEKAFGMFGDISQVMVLRDRETNVSRGFAFMSFESQDSADEA 65
Query: 96 KYHMDGYLLLGRELTVVFAE 115
M G ++GR +TV AE
Sbjct: 66 IRRMHGVEIMGRCVTVRKAE 85
>gi|427718424|ref|YP_007066418.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427350860|gb|AFY33584.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 101
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + EDL+ F ++G + + LP D TG PRGF FV+ A A
Sbjct: 2 SIYVGNLSYQVTEEDLKRAFAEYGTVNRVQLPTDRETGRPRGFAFVEMETDAQETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG +GR+L V N+ KP E R
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREER 83
>gi|432877559|ref|XP_004073159.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Oryzias latipes]
Length = 386
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYS 154
A M+G L G+ + V E+ K E R +Y R PPR R
Sbjct: 65 AAREMNGKSLDGKPIKV---EQATKPQFESAGRRGPPSNYSRSRGPPRGPRGSRGGPSGM 121
Query: 155 RSP--DYYSPP 163
R P DYY P
Sbjct: 122 RGPPRDYYDSP 132
>gi|1843458|gb|AAB81555.1| Rbm [Mus musculus]
Length = 380
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P + + L R + L+ FG+FG + + L RD T + RGF F+ + PADA +
Sbjct: 5 DQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKN 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYS 154
A M+G +L G+ + V A ++PS + + ++ PP +SR+ RG S
Sbjct: 65 AVKEMNGVILDGKRIKVKQA----RRPSSLES--------GSKKRPPSFSRT----RGAS 108
Query: 155 R 155
R
Sbjct: 109 R 109
>gi|357148211|ref|XP_003574673.1| PREDICTED: uncharacterized protein LOC100824108 [Brachypodium
distachyon]
Length = 283
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNISFRTTADDLYPLFDRYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR + V FA+
Sbjct: 77 LDGRNVDGRNIMVQFAK 93
>gi|395394008|ref|NP_001257441.1| RNA-binding motif protein, Y chromosome, family 1 member B [Mus
musculus]
gi|341942161|sp|Q60990.3|RBY1B_MOUSE RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member B; AltName: Full=RNA-binding motif protein 1
Length = 380
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P + + L R + L+ FG+FG + + L RD T + RGF F+ + PADA +
Sbjct: 5 DQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKN 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYS 154
A M+G +L G+ + V A ++PS + + ++ PP +SR+ RG S
Sbjct: 65 AVKEMNGVILDGKRIKVKQA----RRPSSLES--------GSKKRPPSFSRT----RGAS 108
Query: 155 R 155
R
Sbjct: 109 R 109
>gi|154296406|ref|XP_001548634.1| hypothetical protein BC1G_13029 [Botryotinia fuckeliana B05.10]
gi|347839105|emb|CCD53677.1| similar to multiple RNA-binding domain-containing protein 1
[Botryotinia fuckeliana]
Length = 838
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + +DLR F Q+G L++I+LP D G +GF VQY DP AA+A +++
Sbjct: 313 LFVRNLPYSATEDDLRKHFEQYGTLEEIHLPVD-AKGASKGFVLVQYTDPNAAAEAYHNV 371
Query: 100 DGYLLLGRELTVVFAEENR 118
DG GR L ++ A R
Sbjct: 372 DGEPFQGRLLHILPAAAKR 390
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L+V+NL + D+R FG +G+L+ + +P+ + RGF F +I +A +A
Sbjct: 715 TKLIVKNLPFEASKSDIRKLFGTYGQLRSVRMPKK-FDHSTRGFAFADFITAREAENALE 773
Query: 98 HMDGYLLLGRELTVVFAEE 116
+ LLGR L + FA E
Sbjct: 774 ALKDTHLLGRRLVIDFASE 792
>gi|65301143|ref|NP_083936.1| RNA-binding motif protein, X-linked-like-2 [Mus musculus]
gi|12838734|dbj|BAB24311.1| unnamed protein product [Mus musculus]
Length = 385
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + +PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKGLETAFGKYGRIIEVLLMKDRETSKSRGFAFVTFENPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVAQATK 86
>gi|443726784|gb|ELU13843.1| hypothetical protein CAPTEDRAFT_222121 [Capitella teleta]
Length = 232
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDI-----YLPRDYYTGEPR--------GFGFV 84
TSL VRN+ R E+LR FG++G + D + PR + + +
Sbjct: 10 TSLYVRNVPDTTRSEELRSLFGKYGPISDTNQEQSFKPRLLQSKQAKCKWQRVNVNVPNS 69
Query: 85 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+ DP DA DA YH+D G +L + FA +RK PS+MR +ER
Sbjct: 70 TFEDPRDAEDALYHLDRTRFFGCDLEIEFARGDRKTPSQMRTKER 114
>gi|17232175|ref|NP_488723.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|6274493|gb|AAF06670.1|AF196328_2 RbpD [Nostoc sp. PCC 7120]
gi|1064777|dbj|BAA08402.1| RNA-binding protein [Anabaena variabilis]
gi|17133820|dbj|BAB76382.1| RNA-binding protein [Nostoc sp. PCC 7120]
Length = 110
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ + NL + EDL+ F ++G++ + LP D TG PRGF FV+ A A
Sbjct: 2 SIYIGNLSYQVTEEDLKLAFAEYGKVSRVQLPTDRETGRPRGFAFVEMETEAQETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ KP E
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRE 81
>gi|434398406|ref|YP_007132410.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
gi|428269503|gb|AFZ35444.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
Length = 106
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ + NL + EDL F ++G++K +YLP D TG+ RGFGFV+ A A
Sbjct: 2 SIYIGNLSYQVTQEDLNEVFAEYGKVKKVYLPTDRETGKMRGFGFVEMETEAAETAAIEA 61
Query: 99 MDGYLLLGRELTV 111
+DG +GREL V
Sbjct: 62 LDGAEWMGRELKV 74
>gi|148237346|ref|NP_001084981.1| RNA-binding motif protein, X chromosome [Xenopus laevis]
gi|82236857|sp|Q6IRQ4.1|RBMX_XENLA RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G
gi|47682580|gb|AAH70649.1| MGC82187 protein [Xenopus laevis]
Length = 370
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A ++G L G+ + V E KPS
Sbjct: 65 AARELNGKALDGKPIKV----EQATKPS 88
>gi|159164100|pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 18 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 77
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 78 GGQWLGGRQIRTNWA--TRKPPA 98
>gi|62638116|gb|AAX92663.1| RBMY1 [Pan troglodytes]
Length = 146
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKP S DGRR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKP---------SFQSDGRRRPPASSRN 102
>gi|302761116|ref|XP_002963980.1| hypothetical protein SELMODRAFT_142186 [Selaginella moellendorffii]
gi|300167709|gb|EFJ34313.1| hypothetical protein SELMODRAFT_142186 [Selaginella moellendorffii]
Length = 174
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T+L V L + E L F FG +KD+ +P D T + RGFGFV Y++ DAA A
Sbjct: 8 TALYVGGLDENVNEEVLHAAFIPFGDIKDVTMPLDQGTQKHRGFGFVTYLERDDAAAAMD 67
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSE 123
+M L G+ LTV +A+ + K E
Sbjct: 68 NMHNSELFGKVLTVNYAQPMKIKGGE 93
>gi|426194777|gb|EKV44708.1| hypothetical protein AGABI2DRAFT_194634 [Agaricus bisporus var.
bisporus H97]
Length = 300
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGR--------DLPTSLLVRNLRHDCRPEDLRGPFGQF 61
P+P G +Y PS R G G DLPT L V N+ D DLR FG F
Sbjct: 182 PTPLPTTGGKYVPPSMRAGARGAGESMRTSNRDDLPT-LRVTNISEDTGENDLRELFGNF 240
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA--KYHMDGY--LLL 105
GR+ +Y+ RD TG +GF FV + D A A A K H GY L+L
Sbjct: 241 GRVARVYVGRDRETGAGKGFAFVSFEDRAVAQKAMEKVHGRGYDNLIL 288
>gi|351722320|ref|NP_001236472.1| uncharacterized protein LOC100306540 [Glycine max]
gi|255628821|gb|ACU14755.1| unknown [Glycine max]
Length = 146
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L V L +D LR FGQ G + ++ + D+ TG+ RG+GFV+++ AA A+
Sbjct: 58 TKLFVTGLSYDTNEPILRDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFVSETTAAAARK 117
Query: 98 HMDGYLLLGRELTVVFAEE 116
M+G +L GR + V +A +
Sbjct: 118 EMNGQILDGRRIRVSYAHK 136
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T++ V+N+ D E+ RG F ++G + L RD TG+ RGFGFV + D A+ A
Sbjct: 239 TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSR 132
++ Y L G++L V A++ ++ E+R + +R
Sbjct: 299 ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
>gi|297829568|ref|XP_002882666.1| hypothetical protein ARALYDRAFT_897216 [Arabidopsis lyrata subsp.
lyrata]
gi|297328506|gb|EFH58925.1| hypothetical protein ARALYDRAFT_897216 [Arabidopsis lyrata subsp.
lyrata]
Length = 257
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
++L V NL D+ F FG++ + + +D +T + RG FV Y+ DAA A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 98 HMDGYLLLGRELTVVFAEEN 117
MD +L GR+LTV A +N
Sbjct: 117 SMDAKILNGRKLTVSIAADN 136
>gi|119578959|gb|EAW58555.1| hCG2010950 [Homo sapiens]
Length = 256
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + + L FG++GR+ ++ L +D+ T + GF FV + PADA D
Sbjct: 5 DCPGKPFTGGLNTETNEKALEAVFGKYGRIVEVLLVKDHETNKSGGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIEV----EQANKPS 88
>gi|66809481|ref|XP_638463.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996868|sp|Q54PB2.1|MRD1_DICDI RecName: Full=Multiple RNA-binding domain-containing protein 1;
AltName: Full=RNA-binding motif protein 19 homolog;
AltName: Full=RNA-binding protein 19 homolog
gi|60467060|gb|EAL65101.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 895
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ VRNL + + EDL F +FG++ +I++P DY + + +G F+ Y+ P +A A M
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYD 135
DG + GR + V+ P + ++FS + D
Sbjct: 423 DGKVFQGRLIHVL--------PGKAAPAKQFSENKD 450
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
GG+ + ++++NL + +++R F +G ++ + +P+ G RGFGFV+++
Sbjct: 787 GGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGH-RGFGFVEFLTE 845
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+A +A + GR L + +AE++ K E+R +
Sbjct: 846 EEAKNAMEALGNSHFYGRHLVLQYAEQD-KNIDELREK 882
>gi|17230420|ref|NP_486968.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75907197|ref|YP_321493.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|81818505|sp|Q44554.3|RBPB_NOSS1 RecName: Full=Putative RNA-binding protein RbpB
gi|304057|gb|AAA67898.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|801736|dbj|BAA09050.1| RNA-binding protein RbpB [Anabaena variabilis]
gi|17132022|dbj|BAB74627.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75700922|gb|ABA20598.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 103
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D E L F ++G +K + LP D TG RGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ KP E
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRE 81
>gi|409076532|gb|EKM76903.1| hypothetical protein AGABI1DRAFT_115556 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 300
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGR--------DLPTSLLVRNLRHDCRPEDLRGPFGQF 61
P+P G +Y PS R G G DLPT L V N+ D DLR FG F
Sbjct: 182 PTPLPTTGGKYVPPSMRAGARGAGESMRTSNRDDLPT-LRVTNISEDTGENDLRELFGNF 240
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA--KYHMDGY--LLL 105
GR+ +Y+ RD TG +GF FV + D A A A K H GY L+L
Sbjct: 241 GRVARVYVGRDRETGAGKGFAFVSFEDRAVAQKAMEKVHGRGYDNLIL 288
>gi|186681440|ref|YP_001864636.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
gi|186463892|gb|ACC79693.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
Length = 106
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D EDL G F ++G +K + +P D TG PRGF FV+ A+ A
Sbjct: 2 SIYVGNLSYDVTQEDLSGIFAEYGTVKRVQVPTDRETGRPRGFAFVEMGTEAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG +GR+L V N+ KP E R
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPKEDRG 84
>gi|365757846|gb|EHM99718.1| Mrd1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 879
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RN+ ++ + ED + FG FG L+++++ D TG+ +GF +V + DP +A +A +
Sbjct: 339 LFLRNILYNSKEEDFKALFGPFGDLEEVHVALDTRTGQSKGFAYVLFKDPKNAVNAYVEL 398
Query: 100 DGYLLLGRELTVVFAEENR 118
D + GR L ++ EE +
Sbjct: 399 DKQIFQGRLLHILPGEEKK 417
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
++V+NL + +D+ F FG+LK + +P+ + RGF FV+++ P +A +A +
Sbjct: 757 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF-DKSARGFAFVEFLLPKEAENAMDQL 815
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
G LLGR L + +AEE+ E AR
Sbjct: 816 HGVHLLGRRLIMQYAEEDAVNAEEEIAR 843
>gi|332211654|ref|XP_003254929.1| PREDICTED: RNA-binding motif protein, X-linked-like-2 [Nomascus
leucogenys]
Length = 393
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVAQATK 86
>gi|195657783|gb|ACG48359.1| splicing factor, arginine/serine-rich 2 [Zea mays]
Length = 254
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNISFRTTADDLFPLFERYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAE--ENRKKPSEMRARERFSRSYD 135
+DG + GR + V FA+ N + + R +E +S D
Sbjct: 77 LDGRDVDGRNIMVQFAKYGXNAEPIRKGRVKEGVEKSQD 115
>gi|148684912|gb|EDL16859.1| mCG120440 [Mus musculus]
Length = 366
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + +PADA
Sbjct: 36 DRPGKLFIGGLNLETDEKGLETAFGKYGRIIEVLLMKDRETSKSRGFAFVTFENPADAKA 95
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A M+G L G+ + V A
Sbjct: 96 AARDMNGKSLDGKAIKVAQA 115
>gi|443312655|ref|ZP_21042271.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
gi|442777374|gb|ELR87651.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
Length = 96
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
++ V NL + EDLR F ++G +K I LP D TG RGF FV + A A
Sbjct: 2 TIYVGNLSYRATEEDLRTVFAEYGAIKRIVLPTDRETGRLRGFAFVDMNEDAQEDTAITE 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARE 128
+DG +GR+L V N+ KP E RE
Sbjct: 62 LDGAEWMGRQLRV-----NKAKPKEDNRRE 86
>gi|302765723|ref|XP_002966282.1| hypothetical protein SELMODRAFT_7952 [Selaginella moellendorffii]
gi|302793049|ref|XP_002978290.1| hypothetical protein SELMODRAFT_7949 [Selaginella moellendorffii]
gi|300154311|gb|EFJ20947.1| hypothetical protein SELMODRAFT_7949 [Selaginella moellendorffii]
gi|300165702|gb|EFJ32309.1| hypothetical protein SELMODRAFT_7952 [Selaginella moellendorffii]
Length = 92
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TG+ RGF FV+Y +A A
Sbjct: 9 SLLVLNITFRTSADDLFPLFDRYGKVVDIFIPRDRRTGDSRGFAFVRYKHADEAQKAIER 68
Query: 99 MDGYLLLGRELTVVFAEENRKKPS 122
+DG + GR + V FA+ R S
Sbjct: 69 LDGKNVDGRNIVVQFAKYGRNDES 92
>gi|148909922|gb|ABR18047.1| unknown [Picea sitchensis]
Length = 267
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ DI++PRD TG+ RGF F +Y +A A
Sbjct: 17 SLLVLNITFRTSADDLFPLFDRYGKVVDIFIPRDRRTGDSRGFAFFRYKYADEAQKAVER 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR + V FA+
Sbjct: 77 LDGKNVDGRYIMVQFAK 93
>gi|156054690|ref|XP_001593271.1| hypothetical protein SS1G_06193 [Sclerotinia sclerotiorum 1980]
gi|154703973|gb|EDO03712.1| hypothetical protein SS1G_06193 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 842
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + +DLR F Q+G L++I+LP D G +GF VQY DP AA+A +++
Sbjct: 317 LFVRNLPYSATEDDLRKHFEQYGALEEIHLPVD-AKGASKGFVLVQYTDPNAAAEAYHNV 375
Query: 100 DGYLLLGRELTVVFAEENR 118
DG GR L ++ A R
Sbjct: 376 DGEPFQGRLLHILPAAAKR 394
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L+V+NL + D+R FG +G+L+ + +P+ + RGF F +I +A +A
Sbjct: 719 TKLIVKNLPFEASKSDIRKLFGTYGQLRSVRMPKK-FDHSTRGFAFADFITAREAENALE 777
Query: 98 HMDGYLLLGRELTVVFAEE 116
+ LLGR L + FA E
Sbjct: 778 ALKDTHLLGRRLVIDFASE 796
>gi|390599914|gb|EIN09310.1| translation initiation factor eIF3g [Punctularia strigosozonata
HHB-11173 SS5]
Length = 296
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 19 RYRSPSPRGHYGGRGR--DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTG 76
R R P R G G DLPT L V N+ D + DLR FG+FGR+ +++ RD TG
Sbjct: 194 RNRGPGERMTGPGSGNRDDLPT-LRVTNISEDTQENDLRDLFGRFGRVARVFVGRDRETG 252
Query: 77 EPRGFGFVQYIDPADAADAKYHMDGY 102
+GF FV + + A A A M+G+
Sbjct: 253 AGKGFAFVSFEEKAVAERAMQKMNGF 278
>gi|395324282|gb|EJF56725.1| translation initiation factor 3, RNA-binding subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 290
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 15/97 (15%)
Query: 17 GRRYRSPSPRGHYGGRG------------RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64
G +Y PS RG GGRG DLPT L V N+ D + DLR FG FGR+
Sbjct: 178 GGKYVPPSMRG--GGRGPGESMGRPGGSRDDLPT-LRVTNISEDTQENDLRDLFGGFGRV 234
Query: 65 KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101
+Y+ RD TG +GF FV + + A A A M G
Sbjct: 235 ARVYVGRDRETGAGKGFAFVSFEEKAVAQKAMEKMHG 271
>gi|378522970|sp|P0DJD4.1|RBY1C_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member C
Length = 496
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E +KPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAQKPSFQSG---------GRRRPPASSRN 102
>gi|119609850|gb|EAW89444.1| splicing factor, arginine/serine-rich 2, isoform CRA_e [Homo
sapiens]
Length = 78
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA D +
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDVR 72
>gi|431915005|gb|ELK15824.1| Heterogeneous nuclear ribonucleoprotein G [Pteropus alecto]
Length = 390
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L D + L FG++G + ++ L +D T RGF F+ + +P DA D
Sbjct: 5 DRPGKLFIGGLNIDTNEKALEAVFGKYGPIIEVLLMKDRETNRSRGFAFITFENPEDAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 ATKDMNGKSLDGKLIKVEQANK 86
>gi|434396627|ref|YP_007130631.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
gi|428267724|gb|AFZ33665.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
Length = 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V N+ ++ EDL F ++G + +YLP D TG RGFGFV+ + + A
Sbjct: 2 SIYVGNIPYEVTQEDLSSIFAEYGTVTRVYLPVDRETGRMRGFGFVEMSNETEEDQAIET 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGY 153
+DG +GREL V N+ +P E +R+Y G RS + AR Y
Sbjct: 62 LDGAEWMGRELRV-----NKARPKE----NNNNRNYSGGN-----RRSNNLARNY 102
>gi|119490270|ref|ZP_01622783.1| RNA binding protein [Lyngbya sp. PCC 8106]
gi|119454156|gb|EAW35309.1| RNA binding protein [Lyngbya sp. PCC 8106]
Length = 105
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ + NL +D EDL+ F ++G ++ + +P D TG PRGF FV+ ++ A
Sbjct: 2 SVYIGNLSYDVSEEDLKSVFAEYGTVRRVQIPTDRETGRPRGFAFVEMDSDSEEEAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ KP E
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRE 81
>gi|345568773|gb|EGX51665.1| hypothetical protein AOL_s00054g64 [Arthrobotrys oligospora ATCC
24927]
Length = 284
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 7 SYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD 66
SY P R+ G+ + S GR RD +L V NL +DLR F +FGR+
Sbjct: 174 SYVPPHLRNKGKDAGAGSS-SFNAGRERDDLATLRVTNLSEFAEEQDLRDMFERFGRVTR 232
Query: 67 IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----LLLGRELT 110
++L +D TG +GF FV Y D DA A MDG+ L+L E
Sbjct: 233 VFLAKDRDTGRAKGFAFVSYQDRLDAQRACEKMDGFGYGHLILKVEFA 280
>gi|343459003|gb|AEM37660.1| cold inducible RNA binding protein [Epinephelus bruneus]
Length = 176
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L + L + E L FG++G ++ + + RD TG RGFGFV+Y + DA DA M
Sbjct: 7 LFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNSDDAKDALEGM 66
Query: 100 DGYLLLGRELTV 111
+G L GR + V
Sbjct: 67 NGKTLDGRAIRV 78
>gi|242063320|ref|XP_002452949.1| hypothetical protein SORBIDRAFT_04g035420 [Sorghum bicolor]
gi|241932780|gb|EES05925.1| hypothetical protein SORBIDRAFT_04g035420 [Sorghum bicolor]
Length = 299
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
R+ S+ V NL D R DL FGQFG+L +Y+ D TGE RGFGFV ++ D
Sbjct: 214 RNDENSVRVSNLSEDARDPDLAELFGQFGQLSRVYVAIDRVTGESRGFGFVNFVHREDGE 273
Query: 94 DAKYHMDGY 102
A ++GY
Sbjct: 274 RAINKLNGY 282
>gi|229485954|sp|P0C8Z4.1|RMXL3_PANTR RecName: Full=RNA-binding motif protein, X-linked-like-3
Length = 992
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L V L + L+ FG++G + ++L +D T + RGF FV + PADA
Sbjct: 5 DRPEKLFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVV 112
A M+G L G+ + V
Sbjct: 65 AARDMNGKYLDGKAIMVA 82
>gi|332870645|ref|XP_003319027.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 1 [Pan troglodytes]
Length = 497
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS D RR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DCRRRPPASSRN 102
>gi|332870647|ref|XP_003319028.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 2 [Pan troglodytes]
Length = 460
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS D RR PP SR+
Sbjct: 64 AAKDMNGKSLDGKAIKV----EQAKKPSFQS---------DCRRRPPASSRN 102
>gi|119485430|ref|ZP_01619758.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119457186|gb|EAW38312.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 100
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL + EDLR F ++G +K + +P D TG PRGF FV+ A
Sbjct: 2 SVYVGNLSYQVTEEDLRSVFAEYGTVKQVSIPTDRETGRPRGFAFVEMDADTQEQAAIEK 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG +GR+L V N+ +P E R
Sbjct: 62 LDGAEWMGRDLKV-----NKARPREDRG 84
>gi|119492303|ref|ZP_01623650.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119453188|gb|EAW34355.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 101
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL ++ EDL+ F ++G ++ + +P D TG PRGF FV+ + + A
Sbjct: 2 SIYVGNLSYEVTEEDLKSVFAEYGTVQRVSIPTDRETGRPRGFAFVEMQEESKEDAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG +GR+L V N+ +P E R+
Sbjct: 62 LDGAEWMGRDLKV-----NKARPREKRS 84
>gi|296217449|ref|XP_002755014.1| PREDICTED: RNA-binding motif protein, X-linked-like-2 [Callithrix
jacchus]
Length = 394
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AVRDMNGKTLDGKAIKVAQATK 86
>gi|448878320|gb|AGE46123.1| arginine/serine-rich splicing factor SC31 transcript I [Sorghum
bicolor]
Length = 268
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNISFRTTADDLYPLFERYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR + V FA+
Sbjct: 77 LDGRNVDGRNIMVQFAK 93
>gi|115476996|ref|NP_001062094.1| Os08g0486200 [Oryza sativa Japonica Group]
gi|42408182|dbj|BAD09319.1| putative splicing factor, arginine/serine-rich [Oryza sativa
Japonica Group]
gi|113624063|dbj|BAF24008.1| Os08g0486200 [Oryza sativa Japonica Group]
gi|215693774|dbj|BAG88973.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737273|dbj|BAG96202.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 289
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFAFVRYKYAEEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR + V FA+
Sbjct: 77 LDGRNVDGRNIMVQFAK 93
>gi|427709160|ref|YP_007051537.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427361665|gb|AFY44387.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 99
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL ++ + L F ++G +K I LP D TG RGFGFV+ A+ A
Sbjct: 2 SVYVGNLSYEVTEDSLSAVFAEYGSVKRIQLPTDRETGRMRGFGFVEMGTDAEETSAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG +GR+L V N+ KP E R
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPKEDRG 84
>gi|108744011|gb|ABG02278.1| heterogeneous nuclear ribonucleoprotein G [Haplochromis burtoni]
Length = 391
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AAREMNGKSLDGKPIKVEQATK 86
>gi|413925182|gb|AFW65114.1| hypothetical protein ZEAMMB73_855473 [Zea mays]
Length = 268
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNISFRTTADDLFPLFERYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAE--ENRKKPSEMRARERFSRSYD 135
+DG + GR + V FA+ N + + R +E +S D
Sbjct: 77 LDGRDVDGRNIMVQFAKYGPNAEPIRKGRVKEGVEKSQD 115
>gi|114052629|ref|NP_001040075.1| RNA-binding motif protein, X chromosome [Bos taurus]
gi|119907483|ref|XP_001250252.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like [Bos
taurus]
gi|109892459|sp|Q29RT0.1|RBMX_BOVIN RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|88954147|gb|AAI14041.1| Testes-specific heterogenous nuclear ribonucleoprotein G-T [Bos
taurus]
gi|296480068|tpg|DAA22183.1| TPA: RNA binding motif protein, X-linked [Bos taurus]
Length = 396
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF F+ + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A M+G L G+ + V A
Sbjct: 65 AVRDMNGKSLDGKAIKVAQA 84
>gi|428203936|ref|YP_007082525.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
gi|427981368|gb|AFY78968.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
Length = 97
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL ++ DL F ++G +K +++P D TG RGF FV+ A+ A
Sbjct: 2 SIFVGNLSYEVTQADLNSVFAEYGSVKRVHIPTDRETGRMRGFAFVEMETAAEETSAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSR 145
+DG GRE+ V N+ KP E D RS YS+
Sbjct: 62 LDGAEWYGREMKV-----NQAKPRENNG--------DNGRSNSNYSK 95
>gi|348515473|ref|XP_003445264.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Oreochromis niloticus]
Length = 391
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AAREMNGKSLDGKPIKVEQATK 86
>gi|218201347|gb|EEC83774.1| hypothetical protein OsI_29668 [Oryza sativa Indica Group]
gi|222640763|gb|EEE68895.1| hypothetical protein OsJ_27729 [Oryza sativa Japonica Group]
Length = 298
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFAFVRYKYAEEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR + V FA+
Sbjct: 77 LDGRNVDGRNIMVQFAK 93
>gi|300120416|emb|CBK19970.2| unnamed protein product [Blastocystis hominis]
Length = 639
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 19 RYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 78
+ R + R G R T LLVRN+ + +LR FG FG+LK + P+ + G
Sbjct: 534 KKRKLTARAEEDGEKR---TKLLVRNVPFEASRSELRELFGSFGQLKSLRQPKKF-DGTS 589
Query: 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116
RGF FV+Y+ DA A + LLGR+L V +A+E
Sbjct: 590 RGFAFVEYVSSDDAKTAIKALASTHLLGRKLVVEYAKE 627
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L ++N+ + C+ E+LR Q+G + D+++P + E +G+ FV ++ P A A +
Sbjct: 109 LFLQNIPYSCKEEELREFISQYGEIVDVFIPLNSKR-ESKGYAFVTFMFPEQAIAAIEKL 167
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPR 142
DG + GR L V A N KK S + R + +Y G + R
Sbjct: 168 DGSVFQGRVLRVNVA--NVKKESCI---VRHAHTYKGEKYLAR 205
>gi|427727788|ref|YP_007074025.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427363707|gb|AFY46428.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 101
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ + NL + EDL+ F ++G++ + LP D TG PRGF FV+ A+ A
Sbjct: 2 SIYIGNLSYQVTEEDLKRAFAEYGKVNRVQLPTDRETGRPRGFAFVEMETEAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRY 143
+DG +GR+L V N+ KP E R+ R + RS RY
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREERSSSRSGGWGNNNRSNRRY 101
>gi|392562711|gb|EIW55891.1| translation initiation factor 3 RNA-binding subunit [Trametes
versicolor FP-101664 SS1]
Length = 292
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 16 YGRRYRSPSPRGHYGGRG------------RDLPTSLLVRNLRHDCRPEDLRGPFGQFGR 63
G +Y PS RG GGRG DLPT L V N+ D + DLR FG FGR
Sbjct: 179 IGGKYVPPSMRG--GGRGPGEAMGRPGGNRDDLPT-LRVTNISEDTQENDLRDLFGVFGR 235
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101
+ +Y+ RD TG +GF FV + + + A A M G
Sbjct: 236 VARVYVGRDRETGAGKGFAFVSFEEKSSAQKAMEKMHG 273
>gi|325181594|emb|CCA16044.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325191994|emb|CCA26461.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 236
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL H E+LR F +FGRL+ + D + E RGF FV + D DA+DA
Sbjct: 74 NNLYVANLAHRVTDEELRQLFEKFGRLEKCEIIIDPISRESRGFAFVTFEDVRDASDAVQ 133
Query: 98 HMDGYLLLGRELTVVFAE 115
++G + GR + V A+
Sbjct: 134 ELNGKDIQGRRMRVEHAK 151
>gi|410923148|ref|XP_003975044.1| PREDICTED: probable RNA-binding protein 19-like [Takifugu rubripes]
Length = 941
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + C E+L+ F + G L +++ P D T + +GF F+ Y+ P +A A +
Sbjct: 415 LFVRNLPYTCTEEELKELFAKHGPLSELHFPIDSLTKKTKGFAFITYMIPENAVAALAQL 474
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRR 138
DG++ GR L ++ + ++K A S SY ++
Sbjct: 475 DGHVFQGRMLHLLPSTVKKEKADPSDAGAPGSSSYKRQK 513
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAA--- 93
T +L RN+ +LR F FG LK + LP+ +G RGFGF+ ++ DA
Sbjct: 818 TKILARNIPFQASVRELRELFCTFGELKTVRLPKKAAGSGNHRGFGFIDFVTKHDAKKAF 877
Query: 94 DAKYHMDGYLLLGRELTVVFAE 115
DA H L GR L + +A+
Sbjct: 878 DALCHSTH--LYGRRLVLEWAD 897
>gi|350534520|ref|NP_001233578.1| RNA-binding motif protein, X-linked-like-2 [Pan troglodytes]
gi|343958222|dbj|BAK62966.1| testes-specific heterogenous nuclear ribonucleoprotein G-T [Pan
troglodytes]
gi|343961837|dbj|BAK62506.1| testes-specific heterogenous nuclear ribonucleoprotein G-T [Pan
troglodytes]
Length = 392
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVAQATK 86
>gi|8576316|gb|AAC24858.2| testes specific heterogenous nuclear ribonucleoprotein G-T [Homo
sapiens]
gi|119589071|gb|EAW68665.1| testes-specific heterogenous nuclear ribonucleoprotein G-T [Homo
sapiens]
Length = 392
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVAQATK 86
>gi|153252068|ref|NP_055284.3| RNA-binding motif protein, X-linked-like-2 [Homo sapiens]
gi|229462965|sp|O75526.3|HNRGT_HUMAN RecName: Full=RNA-binding motif protein, X-linked-like-2; AltName:
Full=Testis-specific heterogeneous nuclear
ribonucleoprotein G-T; Short=hnRNP G-T
Length = 392
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVAQATK 86
>gi|448878326|gb|AGE46126.1| arginine/serine-rich splicing factor SC31 transcript IV [Sorghum
bicolor]
Length = 273
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNISFRTTADDLYPLFERYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAE 115
+DG + GR + V FA+
Sbjct: 77 LDGRNVDGRNIMVQFAK 93
>gi|224032171|gb|ACN35161.1| unknown [Zea mays]
gi|413925183|gb|AFW65115.1| splicing factor, arginine/serine-rich 2 isoform 1 [Zea mays]
gi|413925184|gb|AFW65116.1| splicing factor, arginine/serine-rich 2 isoform 2 [Zea mays]
gi|448878210|gb|AGE46068.1| arginine/serine-rich splicing factor SC30 transcript VII [Zea mays]
Length = 256
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNISFRTTADDLFPLFERYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAE--ENRKKPSEMRARERFSRSYD 135
+DG + GR + V FA+ N + + R +E +S D
Sbjct: 77 LDGRDVDGRNIMVQFAKYGPNAEPIRKGRVKEGVEKSQD 115
>gi|226533389|ref|NP_001034357.2| RNA binding motif protein 19 [Gallus gallus]
Length = 957
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL EDL F ++G L +I+ P D T +P+GF F+ Y+ P A A M
Sbjct: 416 LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYAEM 475
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRR 138
DG + GR + ++ + + K ++ A E S SY ++
Sbjct: 476 DGQVFQGRMMHLLPSTIKKLKIEDIDAEE--SSSYKKQK 512
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADA 95
+ +LVRN+ ++R F FG LK + LP+ TG RGFGFV ++ DA A
Sbjct: 831 SKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKA 889
>gi|330843751|ref|XP_003293810.1| hypothetical protein DICPUDRAFT_84328 [Dictyostelium purpureum]
gi|325075834|gb|EGC29677.1| hypothetical protein DICPUDRAFT_84328 [Dictyostelium purpureum]
Length = 292
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL R EDLR F QFG++ + + D T E RGFGFV ++ +A DA
Sbjct: 68 NTLHVSNLNPKTREEDLRDTFAQFGKIAECTILVDPNTKESRGFGFVTFLSSDEATDAIS 127
Query: 98 HMDGYLLLGRELTV 111
+D L G + V
Sbjct: 128 RLDSSKLDGNVIRV 141
>gi|238006960|gb|ACR34515.1| unknown [Zea mays]
gi|413925185|gb|AFW65117.1| hypothetical protein ZEAMMB73_855473 [Zea mays]
gi|413925186|gb|AFW65118.1| hypothetical protein ZEAMMB73_855473 [Zea mays]
gi|448878198|gb|AGE46062.1| arginine/serine-rich splicing factor SC30 transcript I [Zea mays]
gi|448878204|gb|AGE46065.1| arginine/serine-rich splicing factor SC30 transcript IV [Zea mays]
Length = 264
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV+Y +A A
Sbjct: 17 SLLVLNISFRTTADDLFPLFERYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDR 76
Query: 99 MDGYLLLGRELTVVFAE--ENRKKPSEMRARERFSRSYD 135
+DG + GR + V FA+ N + + R +E +S D
Sbjct: 77 LDGRDVDGRNIMVQFAKYGPNAEPIRKGRVKEGVEKSQD 115
>gi|443723982|gb|ELU12200.1| hypothetical protein CAPTEDRAFT_225018 [Capitella teleta]
Length = 891
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + C+ +DL F ++G L +++LP D +T + +GF FV ++ P A A +
Sbjct: 367 LYVRNLAYCCKEDDLEQLFTKYGTLSEVHLPIDSFTKKVKGFAFVSFMFPEHAVKAFQEL 426
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERF 130
DG +GR L ++ +E ++ + F
Sbjct: 427 DGKSWMGRILHILPGKEKTEEQEDGNDESNF 457
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAA--- 93
+ +LVRN+ + + ++++ F FG LK LPR +G+ RGF FV ++ DA
Sbjct: 768 SKILVRNIPFEAKQDEVKQLFSVFGELKTARLPRKLAGSGQHRGFAFVDFLSKEDAQRAF 827
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPS-EMRARERFSRS 133
DA H L GR L + +A+ + M+ R++ S
Sbjct: 828 DALCHSTH--LYGRRLVLEWADPDESVDELRMKTASRYADS 866
>gi|426397155|ref|XP_004064791.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 isoform 2
[Gorilla gorilla gorilla]
Length = 413
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L V L + L+ FG++G + ++L +D T + RGF FV + PADA
Sbjct: 5 DHPEKLFVGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMR-------ARERFS-RSYDGRRSP--PRYS 144
A M+G L G+ + V A + K S +R RFS R+ G SP P
Sbjct: 65 AARDMNGKYLDGKAIMVAQAIKPAFKSSRWVPPTPGSGSRSRFSHRTRWGGSSPQRPPSQ 124
Query: 145 RSPHYARGYSRSPDYY---SPPPRR 166
P+ RGY+ D + +P PR+
Sbjct: 125 GGPNDGRGYAGYFDLWPYRAPMPRK 149
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T++ V+N+ D E+ RG F ++G + L RD TG+ RGFGFV + D A+ A
Sbjct: 255 TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 314
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERFSR 132
++ Y L G++L V A++ ++ E+R + +R
Sbjct: 315 ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAAR 349
>gi|158257974|dbj|BAF84960.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVAQATK 86
>gi|19112391|ref|NP_595599.1| RNA-binding protein Mrd1 (predicted) [Schizosaccharomyces pombe
972h-]
gi|48474243|sp|O13620.1|MRD1_SCHPO RecName: Full=Multiple RNA-binding domain-containing protein 1
gi|2257512|dbj|BAA21408.1| hypothetical protein YPR112c [Schizosaccharomyces pombe]
gi|13810221|emb|CAC37370.1| RNA-binding protein Mrd1 (predicted) [Schizosaccharomyces pombe]
Length = 833
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RNL + C +DL+ FG FG+L+ +++P D T P+GF ++ + D DA A +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 100 DGYLLLGRELTVVFAE 115
D GR L V+ A+
Sbjct: 385 DAKPFQGRLLHVLPAK 400
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 18 RRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE 77
R+ S P+G T +L++NL + +D++ G +G+L+ + +P+ +
Sbjct: 711 RKQDSSKPKG----------TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKK-FDRS 759
Query: 78 PRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
RGF F +++ +AA+A + LLGR L + +A
Sbjct: 760 ARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
>gi|426367314|ref|XP_004050678.1| PREDICTED: RNA-binding motif protein, X-linked-like-2 [Gorilla
gorilla gorilla]
Length = 392
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVAQATK 86
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,848,563,764
Number of Sequences: 23463169
Number of extensions: 183495832
Number of successful extensions: 601525
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11787
Number of HSP's successfully gapped in prelim test: 11068
Number of HSP's that attempted gapping in prelim test: 482095
Number of HSP's gapped (non-prelim): 87153
length of query: 209
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 73
effective length of database: 9,168,204,383
effective search space: 669278919959
effective search space used: 669278919959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)