BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028447
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 151/216 (69%), Positives = 161/216 (74%), Gaps = 14/216 (6%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ 60
MRGRSY+ PSPPR YGRR RSPSPRG YGGR RDLPTSLLVRNLRHDCR EDLR F Q
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 58
Query: 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
FG +KDIYLPRDYYTG+PRGFGFVQ++DPADAADAK+HMDGYLLLGRELTVVFAEENRKK
Sbjct: 59 FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 118
Query: 121 PSEMRARERFSRSYDGRRSP------PRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSIS 174
P+EMRARER + RR S P R SRS DYYSPPPRR RSIS
Sbjct: 119 PTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRR-HHPRSIS 177
Query: 175 PRYRRYR-ERSYSRSPYGS----RSYSPSRSRSRSL 205
PR RY RSYSRSP RS +P R +SRSL
Sbjct: 178 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 213
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 65/92 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA Y
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG +L GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA DA+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73
Query: 98 HMDGYLLLGRELTVVFA 114
MDG L GREL V A
Sbjct: 74 AMDGAELDGRELRVQVA 90
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + P DLR F ++G + D+++PRD Y+ + +GFGFV++ + DA A
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 98 HMDGYLLLGRELTVVFAEENR 118
DG L+ GREL V A+ +R
Sbjct: 79 RTDGKLVDGRELRVTLAKYDR 99
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L ++L F Q+GR+ + D TG RG GF+++ +A +A
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 99 MDGYLLLGRE--LTVVFAEENRKKPSEMRARERFSRSY 134
++G G +TV FA PS+ ++ S+ Y
Sbjct: 193 LNGQKPSGATEPITVKFANN----PSQKSSQALLSQLY 226
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 278 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 338 LNGYRLGDRVLQVSF 352
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L ++L F Q+GR+ + D TG RG GF+++ +A +A
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 99 MDG 101
++G
Sbjct: 186 LNG 188
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 23 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 256 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 315
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK 120
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F K
Sbjct: 316 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L ++L F Q+GR+ + D TG RG GF+++ +A +A
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 99 MDGYLLLGRE--LTVVFAEENRKKPSEMRARERFSRSY 134
++G G +TV FA PS+ ++ S+ Y
Sbjct: 186 LNGQKPSGATEPITVKFA----NNPSQKSSQALLSQLY 219
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 337 LNGYRLGDRVLQVSF 351
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L ++L F Q+GR+ + D TG RG GF+++ +A +A
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 99 MDG 101
++G
Sbjct: 186 LNG 188
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+V L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 337 LNGYRLGDRVLQVSF 351
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L ++L F Q+GR+ + D TG RG GF+++ +A +A
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 99 MDG 101
++G
Sbjct: 186 LNG 188
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRG 80
PSP G D T+L+V L + E+ R FG G ++ L RD TG+ G
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 81 FGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
+GFV YIDP DA A ++G L + + V +A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDCRPEDLRGPFGQFGR 63
P PP R+ + G G ++P + V NL D L FG FG
Sbjct: 268 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 327
Query: 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113
+ ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 328 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L ++L F Q+GR+ + D TG RG GF+++ +A +A
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 99 MDGYLLLGRE--LTVVFAEENRKKPSEMRARERFSRSY 134
++G G +TV FA PS+ ++ S+ Y
Sbjct: 198 LNGQKPSGATEPITVKFA----NNPSQKSSQALLSQLY 231
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
M+G L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP DA
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 122
Query: 94 DAKYHMDGYLLLGRELTVVFA 114
A ++G L + + V +A
Sbjct: 123 KAINTLNGLRLQTKTIKVSYA 143
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 293 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 352
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 353 LNGYRLGDRVLQVSF 367
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L ++L F Q+GR+ + D TG RG GF+++ +A +A
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 213
Query: 99 MDG 101
++G
Sbjct: 214 LNG 216
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
M+G L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F +FGR+ ++ L +D T + RGF FV Y +P DA D
Sbjct: 5 DRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AAREMNGKPLDGKPIKVEQATK 86
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D DL F ++G +K + LP D TG RGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG +GR+L V N+ KP E R
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRENR 83
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGTSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+ + FG G ++ L RD TG+ G+GFV Y+DP
Sbjct: 27 GEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPN 86
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 87 DADKAINTLNGLKLQTKTIKVSYA 110
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL + L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 266 CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 325
Query: 99 MDGYLLLGRELTVVFAEENRKKP 121
++GY L R L V F + K
Sbjct: 326 LNGYRLGDRVLQVSFKTSKQHKA 348
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V +L +++ F Q+GR+ + D TG RG GF+++ +A +A
Sbjct: 121 NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 180
Query: 99 MDGYLLLGRE--LTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHY 149
++G LG +TV FA PS+ + + Y + + RY+ H+
Sbjct: 181 LNGQKPLGASEPITVKFA----NNPSQKTGQALLTHLY--QTTARRYTGPLHH 227
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E KKPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPSFQSG---------GRRRPPASSRN 102
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+ + FG G ++ L RD TG+ G+GFV Y+DP
Sbjct: 28 GAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPN 87
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 88 DADKAINTLNGLKLQTKTIKVSYA 111
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL + L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 261 CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 320
Query: 99 MDGYLLLGRELTVVFAEENRKKP 121
++GY L R L V F + K
Sbjct: 321 LNGYRLGDRVLQVSFKTSKQHKA 343
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQF 61
G + + + + P SP G+ D T+L+ L + E+L+ FG
Sbjct: 7 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIDNYLPQNMTQEELKSLFGSI 62
Query: 62 GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A
Sbjct: 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 99 MDGYLLLGRELTVVF 113
++GY L R L V F
Sbjct: 337 LNGYRLGDRVLQVSF 351
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L ++L F Q+GR+ + D TG RG GF+++ +A +A
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 99 MDG 101
++G
Sbjct: 186 LNG 188
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P + + L R + L+ FG+FG + + L RD T + RGF F+ + PADA +
Sbjct: 5 DQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKN 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRSPHYARGYS 154
A M+G +L G+ + V A ++PS + + ++ PP +SR+ RG S
Sbjct: 65 AVKEMNGVILDGKRIKVKQA----RRPSSLES--------GSKKRPPSFSRT----RGAS 108
Query: 155 R 155
R
Sbjct: 109 R 109
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A ++G L G+ + V E KPS
Sbjct: 65 AARELNGKALDGKPIKV----EQATKPS 88
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ VRNL + + EDL F +FG++ +I++P DY + + +G F+ Y+ P +A A M
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYD 135
DG + GR + V+ P + ++FS + D
Sbjct: 423 DGKVFQGRLIHVL--------PGKAAPAKQFSENKD 450
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
GG+ + ++++NL + +++R F +G ++ + +P+ G RGFGFV+++
Sbjct: 787 GGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGH-RGFGFVEFLTE 845
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+A +A + GR L + +AE++ K E+R +
Sbjct: 846 EEAKNAMEALGNSHFYGRHLVLQYAEQD-KNIDELREK 882
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
S+ V NL +D E L F ++G +K + LP D TG RGFGFV+ A+ A
Sbjct: 2 SIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEA 61
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
+DG +GR+L V N+ KP E
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPRE 81
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFSRSYDGRRSPPRYSRS 146
A M+G L G+ + V E +KPS GRR PP SR+
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAQKPSFQSG---------GRRRPPASSRN 102
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L V L + L+ FG++G + ++L +D T + RGF FV + PADA
Sbjct: 5 DRPEKLFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVV 112
A M+G L G+ + V
Sbjct: 65 AARDMNGKYLDGKAIMVA 82
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSR 132
G L GR++ +A RK P+ +E ++
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPAPKSTQETNTK 206
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF F+ + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A M+G L G+ + V A
Sbjct: 65 AVRDMNGKSLDGKAIKVAQA 84
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERFSR 132
G L GR++ +A RK P+ +E ++
Sbjct: 159 GGQWLGGRQIRTNWA--TRKPPAPKSTQENNTK 189
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P +L V NL D + F Q G K + ++ + +P + FV++ + DAA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAAL 65
Query: 97 YHMDGYLLLGRELTVVFA 114
M+G +LG+E+ V +A
Sbjct: 66 AAMNGRKILGKEVKVNWA 83
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFAEE 116
A M+G L G+ + V A +
Sbjct: 65 AARDMNGKSLDGKAIKVAQATK 86
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RNL + C +DL+ FG FG+L+ +++P D T P+GF ++ + D DA A +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 100 DGYLLLGRELTVVFAE 115
D GR L V+ A+
Sbjct: 385 DAKPFQGRLLHVLPAK 400
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 18 RRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE 77
R+ S P+G T +L++NL + +D++ G +G+L+ + +P+ +
Sbjct: 711 RKQDSSKPKG----------TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKK-FDRS 759
Query: 78 PRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114
RGF F +++ +AA+A + LLGR L + +A
Sbjct: 760 ARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
Score = 35.8 bits (81), Expect = 0.22, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 80 GFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
GFGFV++ D A A A + M+G++L G +L + + + +E+R ++
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQD 714
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,317,561
Number of Sequences: 539616
Number of extensions: 4307005
Number of successful extensions: 16377
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 430
Number of HSP's that attempted gapping in prelim test: 10280
Number of HSP's gapped (non-prelim): 4010
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)