Query 028447
Match_columns 209
No_of_seqs 301 out of 2605
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 11:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.9 1.2E-23 2.5E-28 156.8 14.8 81 34-119 7-87 (195)
2 PLN03134 glycine-rich RNA-bind 99.9 8.6E-22 1.9E-26 147.2 14.9 97 23-119 20-116 (144)
3 KOG4207 Predicted splicing fac 99.9 1.1E-21 2.5E-26 149.8 14.0 89 31-119 7-95 (256)
4 KOG0113 U1 small nuclear ribon 99.8 5.4E-19 1.2E-23 141.7 14.5 83 35-117 99-181 (335)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.5E-18 3.4E-23 147.4 12.6 84 35-118 267-350 (352)
6 TIGR01659 sex-lethal sex-letha 99.8 9E-19 2E-23 148.2 11.0 84 33-116 103-186 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.8E-18 4E-23 147.0 11.2 83 36-118 2-84 (352)
8 PF00076 RRM_1: RNA recognitio 99.8 6.4E-18 1.4E-22 110.4 9.3 70 40-110 1-70 (70)
9 KOG0122 Translation initiation 99.8 6E-18 1.3E-22 132.4 10.4 87 31-117 183-269 (270)
10 KOG0121 Nuclear cap-binding pr 99.7 6.3E-18 1.4E-22 120.2 6.9 81 35-115 34-114 (153)
11 TIGR01659 sex-lethal sex-letha 99.7 3.8E-17 8.3E-22 138.3 12.6 84 35-118 191-276 (346)
12 KOG0149 Predicted RNA-binding 99.7 1.1E-17 2.5E-22 130.3 6.7 83 33-116 8-90 (247)
13 KOG0130 RNA-binding protein RB 99.7 2.9E-17 6.4E-22 117.8 7.4 84 35-118 70-153 (170)
14 PF14259 RRM_6: RNA recognitio 99.7 1.6E-16 3.4E-21 104.2 10.0 70 40-110 1-70 (70)
15 TIGR01622 SF-CC1 splicing fact 99.7 2.8E-16 6E-21 138.1 13.3 80 36-116 88-167 (457)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 2.4E-16 5.1E-21 140.2 11.8 84 34-117 292-375 (509)
17 KOG0126 Predicted RNA-binding 99.7 6.9E-18 1.5E-22 126.7 1.0 79 37-115 35-113 (219)
18 KOG0111 Cyclophilin-type pepti 99.7 4.4E-17 9.6E-22 125.9 4.6 88 34-121 7-94 (298)
19 TIGR01645 half-pint poly-U bin 99.7 3.6E-16 7.8E-21 139.6 11.0 84 35-118 202-285 (612)
20 PLN03120 nucleic acid binding 99.7 5E-16 1.1E-20 124.6 10.6 76 37-116 4-79 (260)
21 KOG0125 Ataxin 2-binding prote 99.7 2.4E-16 5.2E-21 128.1 8.5 86 29-116 88-173 (376)
22 TIGR01645 half-pint poly-U bin 99.7 3.5E-16 7.6E-21 139.7 10.2 81 35-115 105-185 (612)
23 TIGR01622 SF-CC1 splicing fact 99.7 5.5E-16 1.2E-20 136.2 11.3 80 37-116 186-265 (457)
24 KOG0131 Splicing factor 3b, su 99.6 2E-16 4.3E-21 119.0 5.7 83 33-115 5-87 (203)
25 smart00362 RRM_2 RNA recogniti 99.6 1.9E-15 4.1E-20 98.0 9.2 72 39-112 1-72 (72)
26 KOG0117 Heterogeneous nuclear 99.6 1.6E-15 3.4E-20 127.7 10.5 87 30-116 76-163 (506)
27 TIGR01628 PABP-1234 polyadenyl 99.6 1.3E-15 2.8E-20 137.2 10.7 79 38-116 1-79 (562)
28 TIGR01648 hnRNP-R-Q heterogene 99.6 1.3E-15 2.9E-20 135.6 10.2 80 34-114 55-135 (578)
29 KOG0105 Alternative splicing f 99.6 8.5E-16 1.8E-20 115.9 7.5 80 36-118 5-84 (241)
30 PLN03213 repressor of silencin 99.6 1.3E-15 2.8E-20 129.8 9.5 78 36-117 9-88 (759)
31 PLN03121 nucleic acid binding 99.6 4.6E-15 1E-19 117.4 10.4 77 36-116 4-80 (243)
32 TIGR01628 PABP-1234 polyadenyl 99.6 3.5E-15 7.5E-20 134.4 10.6 84 34-118 282-365 (562)
33 TIGR01648 hnRNP-R-Q heterogene 99.6 4.7E-15 1E-19 132.2 10.5 76 36-119 232-309 (578)
34 KOG0148 Apoptosis-promoting RN 99.6 2E-15 4.4E-20 119.9 7.1 81 38-118 63-143 (321)
35 smart00360 RRM RNA recognition 99.6 6.2E-15 1.3E-19 95.2 8.0 71 42-112 1-71 (71)
36 KOG0148 Apoptosis-promoting RN 99.6 7.7E-15 1.7E-19 116.6 9.4 79 34-118 161-239 (321)
37 COG0724 RNA-binding proteins ( 99.6 8.1E-15 1.8E-19 118.4 9.8 80 37-116 115-194 (306)
38 KOG0145 RNA-binding protein EL 99.6 9.3E-15 2E-19 115.7 9.2 85 34-118 38-122 (360)
39 cd00590 RRM RRM (RNA recogniti 99.6 2.4E-14 5.2E-19 93.2 9.7 74 39-113 1-74 (74)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.4E-14 3.1E-19 128.1 11.3 79 35-118 273-352 (481)
41 KOG0114 Predicted RNA-binding 99.6 2E-14 4.3E-19 98.8 8.6 80 35-117 16-95 (124)
42 KOG0415 Predicted peptidyl pro 99.6 5.3E-15 1.1E-19 121.4 6.5 84 33-116 235-318 (479)
43 KOG0145 RNA-binding protein EL 99.6 3.1E-14 6.6E-19 112.8 10.4 82 36-117 277-358 (360)
44 KOG0108 mRNA cleavage and poly 99.6 9.7E-15 2.1E-19 125.8 8.3 85 38-122 19-103 (435)
45 KOG0109 RNA-binding protein LA 99.5 8.8E-15 1.9E-19 117.3 6.2 73 37-117 2-74 (346)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.3E-14 7.3E-19 125.8 10.2 76 36-117 1-78 (481)
47 KOG0144 RNA-binding protein CU 99.5 1E-14 2.2E-19 122.4 5.3 86 37-123 124-212 (510)
48 KOG0117 Heterogeneous nuclear 99.5 3.8E-14 8.3E-19 119.4 7.4 76 37-120 259-334 (506)
49 KOG0127 Nucleolar protein fibr 99.5 7.7E-14 1.7E-18 120.2 9.3 83 35-118 115-197 (678)
50 KOG0147 Transcriptional coacti 99.5 3.8E-14 8.2E-19 122.1 6.7 79 40-118 281-359 (549)
51 PF13893 RRM_5: RNA recognitio 99.5 2.3E-13 4.9E-18 85.4 8.3 56 54-114 1-56 (56)
52 smart00361 RRM_1 RNA recogniti 99.5 2.4E-13 5.3E-18 89.2 7.8 61 51-111 2-69 (70)
53 KOG0144 RNA-binding protein CU 99.5 9.1E-14 2E-18 116.7 7.0 85 35-119 32-119 (510)
54 KOG0132 RNA polymerase II C-te 99.5 4.7E-13 1E-17 119.3 10.5 79 37-121 421-499 (894)
55 KOG0124 Polypyrimidine tract-b 99.5 6.5E-14 1.4E-18 115.6 4.8 79 36-114 112-190 (544)
56 KOG0127 Nucleolar protein fibr 99.4 4.9E-13 1.1E-17 115.2 9.1 85 34-118 289-379 (678)
57 KOG0146 RNA-binding protein ET 99.4 1.7E-13 3.6E-18 109.0 5.0 86 33-118 281-366 (371)
58 KOG0109 RNA-binding protein LA 99.4 2.3E-13 5E-18 109.3 5.2 76 34-117 75-150 (346)
59 KOG0131 Splicing factor 3b, su 99.4 7.6E-13 1.6E-17 99.8 5.8 87 35-121 94-181 (203)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.4 3.1E-12 6.7E-17 113.9 9.7 74 35-115 173-258 (509)
61 KOG4212 RNA-binding protein hn 99.3 8.3E-12 1.8E-16 105.3 8.8 79 37-116 44-123 (608)
62 KOG4206 Spliceosomal protein s 99.3 7.6E-12 1.6E-16 97.5 7.5 83 33-118 5-91 (221)
63 KOG4208 Nucleolar RNA-binding 99.3 1.1E-11 2.5E-16 95.2 8.2 85 33-117 45-130 (214)
64 KOG0106 Alternative splicing f 99.3 2.7E-12 5.8E-17 100.7 4.2 72 38-117 2-73 (216)
65 KOG4661 Hsp27-ERE-TATA-binding 99.3 1.5E-11 3.2E-16 106.8 7.4 83 35-117 403-485 (940)
66 KOG0153 Predicted RNA-binding 99.2 3.4E-11 7.4E-16 98.9 8.4 80 31-116 222-302 (377)
67 KOG0123 Polyadenylate-binding 99.2 3.8E-11 8.3E-16 102.5 7.7 77 40-119 79-155 (369)
68 KOG0124 Polypyrimidine tract-b 99.2 3.1E-11 6.7E-16 99.9 6.6 80 36-115 209-288 (544)
69 KOG0533 RRM motif-containing p 99.2 6.6E-11 1.4E-15 94.7 8.1 83 35-118 81-163 (243)
70 KOG4205 RNA-binding protein mu 99.2 2.2E-11 4.8E-16 101.1 5.0 81 36-117 5-85 (311)
71 KOG0110 RNA-binding protein (R 99.2 5.7E-11 1.2E-15 105.4 7.9 79 37-115 515-596 (725)
72 KOG0110 RNA-binding protein (R 99.2 3.1E-11 6.6E-16 107.1 4.7 85 35-119 611-695 (725)
73 KOG4205 RNA-binding protein mu 99.1 7.9E-11 1.7E-15 97.8 5.7 85 36-121 96-180 (311)
74 KOG0123 Polyadenylate-binding 99.1 2.6E-10 5.7E-15 97.4 8.1 74 38-117 2-75 (369)
75 PF04059 RRM_2: RNA recognitio 99.1 7.3E-10 1.6E-14 76.7 8.5 80 38-117 2-87 (97)
76 KOG4212 RNA-binding protein hn 99.1 2E-10 4.4E-15 97.0 6.7 77 33-114 532-608 (608)
77 KOG0146 RNA-binding protein ET 99.1 1.3E-10 2.8E-15 92.7 5.0 82 36-118 18-102 (371)
78 KOG0116 RasGAP SH3 binding pro 99.1 7E-10 1.5E-14 95.5 9.8 81 35-116 286-366 (419)
79 KOG4209 Splicing factor RNPS1, 99.1 2.5E-10 5.5E-15 91.4 6.6 83 34-117 98-180 (231)
80 KOG4454 RNA binding protein (R 99.1 8.4E-11 1.8E-15 91.2 2.9 85 31-117 3-87 (267)
81 KOG1548 Transcription elongati 99.0 8.3E-10 1.8E-14 90.9 7.7 85 31-116 128-220 (382)
82 KOG1457 RNA binding protein (c 99.0 6.6E-09 1.4E-13 81.1 10.2 86 33-118 30-119 (284)
83 KOG0151 Predicted splicing reg 99.0 2.2E-09 4.8E-14 95.4 8.0 84 34-117 171-257 (877)
84 KOG4660 Protein Mei2, essentia 98.9 2E-09 4.3E-14 93.5 4.6 71 35-110 73-143 (549)
85 KOG0120 Splicing factor U2AF, 98.8 3.4E-09 7.4E-14 92.5 4.0 86 34-119 286-371 (500)
86 KOG4211 Splicing factor hnRNP- 98.8 2.6E-08 5.7E-13 85.5 8.4 79 35-117 8-86 (510)
87 KOG0226 RNA-binding proteins [ 98.8 4.8E-09 1E-13 83.2 3.3 83 35-117 188-270 (290)
88 KOG0106 Alternative splicing f 98.8 2.1E-08 4.5E-13 78.9 6.7 71 34-112 96-166 (216)
89 KOG1995 Conserved Zn-finger pr 98.8 7.8E-09 1.7E-13 85.7 4.4 84 34-117 63-154 (351)
90 KOG1190 Polypyrimidine tract-b 98.7 5.7E-08 1.2E-12 81.8 8.3 77 37-118 297-374 (492)
91 PF11608 Limkain-b1: Limkain b 98.6 1.4E-07 3.1E-12 62.8 6.4 71 38-118 3-78 (90)
92 KOG1457 RNA binding protein (c 98.6 6.1E-08 1.3E-12 75.8 4.1 67 35-105 208-274 (284)
93 KOG4206 Spliceosomal protein s 98.5 4.2E-07 9.1E-12 71.2 7.8 78 33-115 142-220 (221)
94 KOG1456 Heterogeneous nuclear 98.5 1.2E-06 2.6E-11 73.2 10.8 81 34-119 284-365 (494)
95 PF08777 RRM_3: RNA binding mo 98.5 1.9E-07 4.2E-12 65.9 5.2 72 37-114 1-77 (105)
96 KOG0147 Transcriptional coacti 98.5 4E-08 8.6E-13 85.4 2.0 80 38-118 180-259 (549)
97 KOG4849 mRNA cleavage factor I 98.5 1.1E-07 2.3E-12 78.8 2.9 79 37-115 80-160 (498)
98 KOG4211 Splicing factor hnRNP- 98.4 9.7E-07 2.1E-11 76.1 7.8 79 35-115 101-180 (510)
99 COG5175 MOT2 Transcriptional r 98.4 9.5E-07 2.1E-11 73.0 6.6 81 36-116 113-202 (480)
100 KOG0105 Alternative splicing f 98.3 6E-06 1.3E-10 63.0 9.0 81 26-113 104-186 (241)
101 KOG4210 Nuclear localization s 98.3 5.5E-07 1.2E-11 74.5 3.3 83 34-117 181-264 (285)
102 KOG2314 Translation initiation 98.3 1.6E-06 3.5E-11 75.9 6.0 78 35-113 56-140 (698)
103 KOG1456 Heterogeneous nuclear 98.2 7.9E-06 1.7E-10 68.5 9.0 80 34-118 117-200 (494)
104 KOG2416 Acinus (induces apopto 98.2 1.3E-06 2.8E-11 76.9 4.0 77 34-116 441-521 (718)
105 KOG4307 RNA binding protein RB 98.1 7.4E-06 1.6E-10 73.4 7.6 75 39-113 869-943 (944)
106 KOG2202 U2 snRNP splicing fact 98.1 9.4E-07 2E-11 70.5 1.3 71 52-123 83-154 (260)
107 KOG1365 RNA-binding protein Fu 98.1 3.3E-06 7.1E-11 70.9 4.2 81 34-115 277-360 (508)
108 PF14605 Nup35_RRM_2: Nup53/35 98.1 9.1E-06 2E-10 50.1 4.9 53 37-96 1-53 (53)
109 PF05172 Nup35_RRM: Nup53/35/4 98.0 2.6E-05 5.6E-10 54.4 7.3 79 35-115 4-90 (100)
110 KOG0120 Splicing factor U2AF, 98.0 1.8E-05 4E-10 69.5 7.7 65 52-116 424-491 (500)
111 KOG1548 Transcription elongati 98.0 1.9E-05 4.2E-10 65.5 7.3 78 34-115 262-350 (382)
112 KOG4676 Splicing factor, argin 98.0 1.6E-05 3.5E-10 67.0 5.9 74 39-113 9-85 (479)
113 KOG0112 Large RNA-binding prot 98.0 1.1E-05 2.4E-10 74.2 5.3 85 33-123 451-537 (975)
114 PF08952 DUF1866: Domain of un 98.0 4.3E-05 9.3E-10 56.5 7.5 75 36-119 26-109 (146)
115 KOG1190 Polypyrimidine tract-b 97.9 2.5E-05 5.3E-10 66.2 6.6 78 35-116 412-490 (492)
116 KOG0129 Predicted RNA-binding 97.9 6.7E-05 1.5E-09 65.3 8.9 66 34-100 256-327 (520)
117 KOG3152 TBP-binding protein, a 97.9 6.2E-06 1.3E-10 65.8 2.3 72 37-108 74-157 (278)
118 KOG1855 Predicted RNA-binding 97.9 1.2E-05 2.5E-10 68.5 3.9 70 34-103 228-310 (484)
119 KOG0129 Predicted RNA-binding 97.9 3.3E-05 7.2E-10 67.2 6.5 68 31-98 364-432 (520)
120 KOG1996 mRNA splicing factor [ 97.8 5.8E-05 1.3E-09 61.5 6.3 67 51-117 300-367 (378)
121 KOG4676 Splicing factor, argin 97.7 2.6E-06 5.7E-11 71.6 -2.2 74 37-115 151-224 (479)
122 KOG2193 IGF-II mRNA-binding pr 97.6 6.4E-05 1.4E-09 64.1 3.8 76 38-120 2-79 (584)
123 PF08675 RNA_bind: RNA binding 97.5 0.00064 1.4E-08 45.4 7.1 56 37-101 9-64 (87)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 97.5 0.00069 1.5E-08 52.3 7.7 84 34-117 4-98 (176)
125 KOG1365 RNA-binding protein Fu 97.4 0.00054 1.2E-08 57.9 6.7 71 39-111 163-237 (508)
126 KOG4307 RNA binding protein RB 97.4 0.00019 4E-09 64.7 4.2 81 34-115 431-512 (944)
127 KOG2068 MOT2 transcription fac 97.4 6.7E-05 1.4E-09 62.3 1.2 80 37-117 77-163 (327)
128 KOG0128 RNA-binding protein SA 97.3 0.0001 2.2E-09 67.6 1.8 81 37-118 736-816 (881)
129 PF10309 DUF2414: Protein of u 97.3 0.0018 4E-08 40.9 6.6 56 36-99 4-62 (62)
130 KOG4660 Protein Mei2, essentia 97.1 0.00077 1.7E-08 59.4 4.9 55 61-115 413-471 (549)
131 PF03880 DbpA: DbpA RNA bindin 97.1 0.0019 4.2E-08 42.5 5.7 67 39-114 2-74 (74)
132 KOG0128 RNA-binding protein SA 97.0 4E-05 8.6E-10 70.2 -3.8 68 38-105 668-735 (881)
133 KOG0112 Large RNA-binding prot 96.9 0.00016 3.4E-09 66.8 -0.8 77 37-114 372-448 (975)
134 KOG2591 c-Mpl binding protein, 96.9 0.0012 2.6E-08 58.2 4.4 71 36-113 174-248 (684)
135 KOG0115 RNA-binding protein p5 96.8 0.0013 2.9E-08 52.7 3.6 75 38-113 32-110 (275)
136 PF07576 BRAP2: BRCA1-associat 96.8 0.015 3.2E-07 41.3 8.5 68 37-106 13-81 (110)
137 KOG2135 Proteins containing th 96.7 0.0015 3.3E-08 56.5 3.5 73 37-116 372-445 (526)
138 PF04847 Calcipressin: Calcipr 96.6 0.0067 1.5E-07 47.1 6.3 62 50-117 8-71 (184)
139 PF15023 DUF4523: Protein of u 96.6 0.011 2.4E-07 43.6 6.6 73 34-114 83-159 (166)
140 KOG4285 Mitotic phosphoprotein 96.5 0.014 3E-07 48.1 7.6 71 37-115 197-268 (350)
141 KOG2253 U1 snRNP complex, subu 96.1 0.0028 6.2E-08 57.0 1.8 71 34-113 37-107 (668)
142 KOG4574 RNA-binding protein (c 95.7 0.0062 1.3E-07 56.3 2.3 69 44-118 305-375 (1007)
143 KOG4210 Nuclear localization s 95.5 0.0073 1.6E-07 50.1 1.7 80 36-115 87-166 (285)
144 PF11767 SET_assoc: Histone ly 95.2 0.14 3.1E-06 32.8 6.6 56 48-112 11-66 (66)
145 KOG0804 Cytoplasmic Zn-finger 95.0 0.08 1.7E-06 46.0 6.6 67 37-106 74-142 (493)
146 KOG2318 Uncharacterized conser 94.3 0.28 6.2E-06 44.0 8.3 82 34-115 171-306 (650)
147 KOG4019 Calcineurin-mediated s 93.9 0.063 1.4E-06 41.1 3.2 77 35-117 8-90 (193)
148 KOG4410 5-formyltetrahydrofola 93.7 0.22 4.7E-06 41.0 6.1 64 31-100 324-395 (396)
149 smart00596 PRE_C2HC PRE_C2HC d 92.9 0.14 3E-06 33.0 3.1 61 52-115 2-63 (69)
150 PF07530 PRE_C2HC: Associated 92.8 0.24 5.3E-06 31.9 4.2 62 52-116 2-64 (68)
151 PRK11634 ATP-dependent RNA hel 92.5 3.4 7.4E-05 38.3 12.9 71 37-116 486-562 (629)
152 KOG4483 Uncharacterized conser 91.7 0.45 9.7E-06 40.9 5.6 59 33-98 387-446 (528)
153 KOG2193 IGF-II mRNA-binding pr 90.9 0.0073 1.6E-07 51.9 -5.7 77 37-116 80-156 (584)
154 KOG2891 Surface glycoprotein [ 89.0 0.15 3.2E-06 41.9 0.5 35 37-71 149-195 (445)
155 KOG1295 Nonsense-mediated deca 87.0 1 2.2E-05 38.5 4.3 71 34-104 4-77 (376)
156 COG0724 RNA-binding proteins ( 84.8 1.2 2.7E-05 35.1 3.8 64 33-96 221-284 (306)
157 KOG4365 Uncharacterized conser 84.6 0.14 3E-06 44.5 -1.9 79 37-116 3-81 (572)
158 KOG2295 C2H2 Zn-finger protein 83.8 0.13 2.9E-06 45.7 -2.4 71 37-107 231-301 (648)
159 PF03468 XS: XS domain; Inter 82.4 2.1 4.5E-05 30.7 3.6 49 38-89 9-66 (116)
160 COG5638 Uncharacterized conser 78.8 7.3 0.00016 33.9 6.3 35 80-114 259-295 (622)
161 KOG4454 RNA binding protein (R 78.7 0.46 1E-05 37.7 -0.8 68 36-104 79-150 (267)
162 TIGR03636 L23_arch archaeal ri 77.8 11 0.00024 24.8 5.7 58 39-99 15-74 (77)
163 PRK14548 50S ribosomal protein 77.8 10 0.00023 25.4 5.6 58 39-99 22-81 (84)
164 KOG4207 Predicted splicing fac 77.1 35 0.00076 27.1 10.4 64 42-105 21-86 (256)
165 PF10567 Nab6_mRNP_bdg: RNA-re 73.8 10 0.00022 31.5 5.7 79 37-115 15-106 (309)
166 KOG4008 rRNA processing protei 72.4 5 0.00011 32.3 3.5 33 35-67 38-70 (261)
167 KOG0107 Alternative splicing f 71.0 17 0.00038 28.0 5.9 10 166-175 139-148 (195)
168 PRK10629 EnvZ/OmpR regulon mod 70.2 35 0.00076 24.8 7.3 71 37-115 35-109 (127)
169 KOG2548 SWAP mRNA splicing reg 68.6 2.3 4.9E-05 38.0 0.9 8 199-206 459-466 (653)
170 PF00403 HMA: Heavy-metal-asso 67.2 26 0.00056 21.3 5.4 54 39-98 1-58 (62)
171 KOG3702 Nuclear polyadenylated 64.7 3.8 8.3E-05 37.6 1.6 71 39-110 513-583 (681)
172 PF03439 Spt5-NGN: Early trans 64.6 23 0.0005 23.5 5.1 36 63-103 33-68 (84)
173 PF12829 Mhr1: Transcriptional 64.6 31 0.00067 23.6 5.6 53 45-101 20-73 (91)
174 PF02714 DUF221: Domain of unk 64.5 6.8 0.00015 32.8 3.0 33 82-116 1-33 (325)
175 smart00195 DSPc Dual specifici 64.5 33 0.00071 24.6 6.3 73 38-114 6-86 (138)
176 KOG4840 Predicted hydrolases o 64.5 8.1 0.00018 31.2 3.2 73 37-114 37-115 (299)
177 PRK11901 hypothetical protein; 63.2 18 0.00038 30.6 5.1 57 45-103 250-308 (327)
178 PRK08559 nusG transcription an 63.2 27 0.0006 26.0 5.8 34 64-102 36-69 (153)
179 PF14893 PNMA: PNMA 61.9 7.3 0.00016 33.2 2.7 79 34-117 15-97 (331)
180 PF15513 DUF4651: Domain of un 60.0 18 0.00039 22.8 3.5 19 52-70 9-27 (62)
181 PF09707 Cas_Cas2CT1978: CRISP 58.3 22 0.00047 24.0 4.0 50 35-87 23-72 (86)
182 PF08734 GYD: GYD domain; Int 57.8 50 0.0011 22.3 5.8 46 51-100 22-68 (91)
183 COG0150 PurM Phosphoribosylami 57.0 3 6.5E-05 35.4 -0.4 48 51-102 275-322 (345)
184 COG5193 LHP1 La protein, small 56.6 6 0.00013 34.3 1.3 58 39-96 176-243 (438)
185 KOG4213 RNA-binding protein La 56.0 16 0.00034 28.3 3.3 46 51-98 123-169 (205)
186 KOG3580 Tight junction protein 55.5 35 0.00075 31.6 5.8 10 35-44 37-46 (1027)
187 PF11823 DUF3343: Protein of u 52.8 17 0.00036 23.4 2.7 25 80-104 2-26 (73)
188 KOG0156 Cytochrome P450 CYP2 s 52.2 21 0.00046 32.1 4.1 59 41-109 36-97 (489)
189 PF07292 NID: Nmi/IFP 35 domai 52.0 11 0.00023 25.7 1.7 24 36-59 51-74 (88)
190 COG2608 CopZ Copper chaperone 51.8 43 0.00093 21.4 4.5 56 37-98 3-62 (71)
191 PF01037 AsnC_trans_reg: AsnC 49.4 62 0.0013 20.1 6.9 45 50-98 11-55 (74)
192 cd00027 BRCT Breast Cancer Sup 47.9 58 0.0013 19.3 4.8 27 38-64 2-28 (72)
193 PRK11230 glycolate oxidase sub 47.7 66 0.0014 29.0 6.5 49 51-100 203-255 (499)
194 COG0030 KsgA Dimethyladenosine 47.6 30 0.00064 28.4 4.0 33 38-70 96-128 (259)
195 PRK10905 cell division protein 46.8 34 0.00074 28.9 4.2 61 38-102 248-309 (328)
196 KOG2888 Putative RNA binding p 46.8 8.1 0.00018 32.7 0.6 10 52-61 172-181 (453)
197 PF08544 GHMP_kinases_C: GHMP 45.8 70 0.0015 20.5 5.0 43 52-100 37-80 (85)
198 COG5507 Uncharacterized conser 45.1 28 0.00061 24.1 2.9 22 78-99 65-86 (117)
199 PRK11558 putative ssRNA endonu 44.1 35 0.00076 23.6 3.3 52 35-89 25-76 (97)
200 PF14581 SseB_C: SseB protein 43.3 47 0.001 22.9 4.0 80 36-115 4-89 (108)
201 smart00666 PB1 PB1 domain. Pho 43.1 88 0.0019 20.0 5.9 56 40-100 12-69 (81)
202 PF02426 MIase: Muconolactone 42.3 1.1E+02 0.0024 20.9 7.2 57 44-104 10-76 (91)
203 KOG1847 mRNA splicing factor [ 41.5 24 0.00052 32.7 2.7 7 154-160 736-742 (878)
204 KOG2187 tRNA uracil-5-methyltr 41.4 19 0.00041 32.5 2.0 38 79-116 63-100 (534)
205 PF14111 DUF4283: Domain of un 40.8 14 0.00031 27.0 1.1 66 39-113 17-88 (153)
206 COG0445 GidA Flavin-dependent 40.7 56 0.0012 30.0 4.8 43 37-87 301-343 (621)
207 COG5584 Predicted small secret 40.4 48 0.001 22.9 3.4 31 44-74 29-59 (103)
208 KOG1847 mRNA splicing factor [ 40.2 28 0.00061 32.2 2.9 8 150-157 749-756 (878)
209 PF08156 NOP5NT: NOP5NT (NUC12 39.7 9.2 0.0002 24.4 -0.1 39 52-100 27-65 (67)
210 PTZ00191 60S ribosomal protein 39.3 85 0.0019 23.4 4.9 55 39-96 83-139 (145)
211 cd06405 PB1_Mekk2_3 The PB1 do 39.1 1.1E+02 0.0024 20.1 7.1 60 44-112 15-75 (79)
212 cd06404 PB1_aPKC PB1 domain is 38.7 1.2E+02 0.0026 20.3 6.8 56 39-101 10-70 (83)
213 PF00398 RrnaAD: Ribosomal RNA 38.3 23 0.0005 28.8 2.0 29 37-65 97-127 (262)
214 COG0079 HisC Histidinol-phosph 38.2 51 0.0011 28.3 4.2 50 36-96 145-198 (356)
215 PF05189 RTC_insert: RNA 3'-te 37.6 1E+02 0.0022 21.1 5.0 48 39-86 12-64 (103)
216 COG5470 Uncharacterized conser 37.1 70 0.0015 22.0 3.8 18 79-96 53-70 (96)
217 PF12623 Hen1_L: RNA repair, l 36.8 1.1E+02 0.0024 24.8 5.4 65 34-99 115-183 (245)
218 TIGR00405 L26e_arch ribosomal 36.7 1.1E+02 0.0024 22.3 5.4 25 78-102 37-61 (145)
219 PF13046 DUF3906: Protein of u 36.1 40 0.00088 21.3 2.4 32 51-84 32-63 (64)
220 PF15063 TC1: Thyroid cancer p 36.0 18 0.0004 23.7 0.8 28 37-64 25-52 (79)
221 KOG2135 Proteins containing th 35.7 31 0.00066 30.8 2.4 53 45-104 205-257 (526)
222 PF11411 DNA_ligase_IV: DNA li 35.6 24 0.00051 19.7 1.1 18 46-63 18-35 (36)
223 KOG3671 Actin regulatory prote 34.6 75 0.0016 28.6 4.6 50 48-102 89-138 (569)
224 CHL00123 rps6 ribosomal protei 34.2 1.5E+02 0.0033 20.2 5.6 57 39-97 10-80 (97)
225 PF09902 DUF2129: Uncharacteri 34.2 86 0.0019 20.3 3.8 38 57-103 16-53 (71)
226 KOG3424 40S ribosomal protein 34.0 1.1E+02 0.0024 22.0 4.5 45 48-93 34-83 (132)
227 cd04878 ACT_AHAS N-terminal AC 33.6 1.1E+02 0.0024 18.3 7.0 32 39-70 2-34 (72)
228 TIGR00387 glcD glycolate oxida 33.1 1.4E+02 0.0029 26.2 6.1 49 50-99 145-197 (413)
229 PF05036 SPOR: Sporulation rel 32.8 6 0.00013 25.0 -1.9 60 38-100 5-65 (76)
230 PF10567 Nab6_mRNP_bdg: RNA-re 32.7 1.4E+02 0.003 25.1 5.6 39 64-102 174-214 (309)
231 cd04917 ACT_AKiii-LysC-EC_2 AC 32.7 71 0.0015 19.5 3.2 17 88-104 47-63 (64)
232 TIGR01873 cas_CT1978 CRISPR-as 32.5 68 0.0015 21.7 3.2 49 35-88 23-74 (87)
233 PRK00274 ksgA 16S ribosomal RN 32.5 54 0.0012 26.9 3.3 22 39-60 107-128 (272)
234 PF13291 ACT_4: ACT domain; PD 32.5 1.4E+02 0.0029 19.1 5.9 63 39-101 8-71 (80)
235 cd04880 ACT_AAAH-PDT-like ACT 32.5 1.3E+02 0.0028 18.9 5.5 50 51-101 13-66 (75)
236 PF04127 DFP: DNA / pantothena 32.4 96 0.0021 24.0 4.5 60 38-99 19-79 (185)
237 TIGR00755 ksgA dimethyladenosi 32.0 59 0.0013 26.2 3.4 24 39-62 96-119 (253)
238 COG0018 ArgS Arginyl-tRNA synt 32.0 2.2E+02 0.0047 26.4 7.4 64 51-121 60-131 (577)
239 KOG1999 RNA polymerase II tran 31.8 1E+02 0.0022 30.1 5.3 32 79-111 210-241 (1024)
240 KOG2888 Putative RNA binding p 31.1 21 0.00046 30.3 0.7 9 79-87 160-168 (453)
241 COG1098 VacB Predicted RNA bin 31.0 1E+02 0.0022 22.4 4.0 33 82-114 21-61 (129)
242 PTZ00338 dimethyladenosine tra 30.8 55 0.0012 27.3 3.1 22 39-60 103-124 (294)
243 PF08206 OB_RNB: Ribonuclease 30.7 18 0.0004 22.1 0.2 37 78-115 7-44 (58)
244 COG1207 GlmU N-acetylglucosami 30.4 2.2E+02 0.0047 25.4 6.7 66 37-102 97-174 (460)
245 PRK05772 translation initiatio 30.4 1.6E+02 0.0034 25.5 5.9 50 49-100 3-57 (363)
246 PHA03008 hypothetical protein; 30.2 60 0.0013 25.6 3.0 36 36-71 20-55 (234)
247 KOG0635 Adenosine 5'-phosphosu 29.4 84 0.0018 24.0 3.5 33 35-67 29-64 (207)
248 PRK02886 hypothetical protein; 29.3 1.1E+02 0.0024 20.7 3.8 38 57-103 20-57 (87)
249 COG0002 ArgC Acetylglutamate s 28.9 82 0.0018 27.1 3.8 45 44-88 252-302 (349)
250 PF09383 NIL: NIL domain; Int 28.5 90 0.002 19.9 3.3 54 48-101 13-68 (76)
251 KOG1232 Proteins containing th 28.1 77 0.0017 27.7 3.5 51 44-95 231-285 (511)
252 PRK02302 hypothetical protein; 28.0 1.2E+02 0.0026 20.6 3.8 38 57-103 22-59 (89)
253 COG0225 MsrA Peptide methionin 27.7 1.7E+02 0.0037 22.5 5.0 81 39-122 59-143 (174)
254 PRK04199 rpl10e 50S ribosomal 27.4 2.9E+02 0.0063 21.3 6.8 20 80-99 129-152 (172)
255 smart00650 rADc Ribosomal RNA 27.4 87 0.0019 23.3 3.5 23 38-60 78-100 (169)
256 KOG1719 Dual specificity phosp 27.3 2E+02 0.0044 21.9 5.2 27 87-113 90-116 (183)
257 cd00127 DSPc Dual specificity 27.0 1.8E+02 0.0039 20.4 5.1 21 35-55 4-24 (139)
258 COG3254 Uncharacterized conser 26.9 2.3E+02 0.0049 19.9 5.1 41 52-95 27-67 (105)
259 PLN02805 D-lactate dehydrogena 26.9 2.3E+02 0.005 26.0 6.6 50 50-100 279-332 (555)
260 PF08442 ATP-grasp_2: ATP-gras 26.6 1.3E+02 0.0028 23.6 4.4 53 50-105 26-81 (202)
261 COG4010 Uncharacterized protei 26.4 1.8E+02 0.0039 21.7 4.7 47 44-100 118-164 (170)
262 PF01782 RimM: RimM N-terminal 26.4 1.3E+02 0.0027 19.6 3.8 24 79-103 54-77 (84)
263 PF14268 YoaP: YoaP-like 26.4 67 0.0015 18.7 2.0 34 82-115 3-38 (44)
264 smart00738 NGN In Spt5p, this 26.3 1.3E+02 0.0028 20.3 4.0 24 79-102 59-82 (106)
265 TIGR00587 nfo apurinic endonuc 26.3 93 0.002 25.4 3.7 58 37-100 137-202 (274)
266 PF02829 3H: 3H domain; Inter 26.1 2.3E+02 0.0049 19.6 5.4 50 49-101 9-58 (98)
267 PF01762 Galactosyl_T: Galacto 25.8 81 0.0018 24.2 3.1 34 37-70 21-57 (195)
268 PF13689 DUF4154: Domain of un 25.8 1.2E+02 0.0026 22.2 3.9 35 79-114 26-60 (145)
269 smart00633 Glyco_10 Glycosyl h 25.8 2.1E+02 0.0046 23.0 5.7 67 34-112 115-188 (254)
270 TIGR00279 L10e ribosomal prote 25.3 3.2E+02 0.0069 21.0 6.2 11 88-98 141-151 (172)
271 PRK10162 acetyl esterase; Prov 24.8 2.1E+02 0.0045 23.9 5.6 58 36-99 249-308 (318)
272 cd04904 ACT_AAAH ACT domain of 24.7 1.9E+02 0.0042 18.3 7.7 50 51-101 14-65 (74)
273 PF09702 Cas_Csa5: CRISPR-asso 24.5 76 0.0016 22.2 2.4 23 34-59 61-83 (105)
274 cd04879 ACT_3PGDH-like ACT_3PG 24.4 1.6E+02 0.0035 17.4 6.1 21 50-70 12-33 (71)
275 cd04909 ACT_PDH-BS C-terminal 24.1 1.8E+02 0.0039 17.7 5.5 48 51-100 15-63 (69)
276 KOG4388 Hormone-sensitive lipa 23.5 1.2E+02 0.0025 28.4 3.9 59 36-100 788-852 (880)
277 KOG3432 Vacuolar H+-ATPase V1 23.5 1.4E+02 0.003 21.2 3.5 25 46-70 42-66 (121)
278 KOG0226 RNA-binding proteins [ 23.3 24 0.00051 28.9 -0.3 72 39-111 98-172 (290)
279 cd01611 GABARAP Ubiquitin doma 23.1 1E+02 0.0022 21.8 2.9 25 35-61 39-63 (112)
280 cd06408 PB1_NoxR The PB1 domai 23.0 2E+02 0.0043 19.4 4.1 54 40-99 13-67 (86)
281 TIGR03221 muco_delta muconolac 23.0 2.5E+02 0.0055 19.1 7.4 57 44-104 9-75 (90)
282 PF05929 Phage_GPO: Phage caps 22.9 2.7E+02 0.0058 23.2 5.7 31 57-87 52-82 (276)
283 PF01282 Ribosomal_S24e: Ribos 22.5 2.4E+02 0.0053 18.7 5.0 45 48-93 12-61 (84)
284 COG5236 Uncharacterized conser 22.3 1.7E+02 0.0038 25.2 4.5 51 51-109 264-314 (493)
285 PF12687 DUF3801: Protein of u 22.2 1.9E+02 0.0042 22.7 4.6 57 49-107 39-98 (204)
286 PF00846 Hanta_nucleocap: Hant 21.9 30 0.00065 30.0 0.0 30 29-64 308-337 (428)
287 TIGR02045 P_fruct_ADP ADP-spec 21.8 1.7E+02 0.0037 26.1 4.6 69 37-115 179-259 (446)
288 PTZ00071 40S ribosomal protein 21.7 2.8E+02 0.0061 20.3 5.0 45 48-93 35-85 (132)
289 cd06396 PB1_NBR1 The PB1 domai 21.5 2.6E+02 0.0056 18.6 6.0 64 42-113 13-78 (81)
290 KOG1579 Homocysteine S-methylt 21.2 87 0.0019 26.5 2.5 63 44-115 136-198 (317)
291 PRK01178 rps24e 30S ribosomal 21.2 2.9E+02 0.0063 19.1 5.3 46 48-94 30-80 (99)
292 PF11215 DUF3010: Protein of u 20.8 1.2E+02 0.0027 22.4 3.0 52 45-101 37-94 (138)
293 PHA01632 hypothetical protein 20.6 81 0.0018 19.4 1.7 19 42-60 21-39 (64)
294 PHA03048 IMV membrane protein; 20.5 14 0.00031 25.0 -1.8 23 79-101 26-48 (93)
295 cd05992 PB1 The PB1 domain is 20.4 2.4E+02 0.0052 17.8 5.0 52 44-100 15-69 (81)
296 PF00054 Laminin_G_1: Laminin 20.4 21 0.00047 25.5 -1.1 12 35-46 90-101 (131)
297 PF09341 Pcc1: Transcription f 20.3 1.6E+02 0.0034 18.9 3.2 36 80-115 3-50 (76)
298 PRK15464 cold shock-like prote 20.3 69 0.0015 20.6 1.4 38 79-117 16-59 (70)
299 PF11061 DUF2862: Protein of u 20.1 2.5E+02 0.0054 17.8 3.9 39 43-88 10-51 (64)
300 PLN02707 Soluble inorganic pyr 20.1 41 0.0009 27.7 0.4 40 52-101 208-249 (267)
301 PLN02655 ent-kaurene oxidase 20.1 1.7E+02 0.0038 25.6 4.5 48 41-97 9-59 (466)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=156.82 Aligned_cols=81 Identities=30% Similarity=0.550 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.+..++||||||+..+++.||+.+|..||.|..|+|..++ .|||||||++..||++|+..|+|..|+|..|.|++
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 4668999999999999999999999999999999998765 89999999999999999999999999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
++....
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 986553
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.89 E-value=8.6e-22 Score=147.21 Aligned_cols=97 Identities=33% Similarity=0.449 Sum_probs=88.9
Q ss_pred CCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 23 PSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 23 ~~~~~~~~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
+.|.+...+......++|||+||++++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|+.||+.||+.
T Consensus 20 ~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~ 99 (144)
T PLN03134 20 NVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99 (144)
T ss_pred CCccccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 34556666667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 028447 103 LLLGRELTVVFAEENRK 119 (209)
Q Consensus 103 ~i~g~~i~V~~a~~~~~ 119 (209)
+|+|+.|+|+++..+..
T Consensus 100 ~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 100 ELNGRHIRVNPANDRPS 116 (144)
T ss_pred EECCEEEEEEeCCcCCC
Confidence 99999999999976543
No 3
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.88 E-value=1.1e-21 Score=149.78 Aligned_cols=89 Identities=46% Similarity=0.689 Sum_probs=83.6
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
.++-+..++|-|-||.+.|+.++|..+|++||.|-+|.|+.|..|+...|||||.|....+|++|+++|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 028447 111 VVFAEENRK 119 (209)
Q Consensus 111 V~~a~~~~~ 119 (209)
|++|+....
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999986543
No 4
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=5.4e-19 Score=141.69 Aligned_cols=83 Identities=31% Similarity=0.492 Sum_probs=80.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
|+-+||||+-|+++|+|..|+.+|+.||.|+.|.||.|+.||+++|||||+|+++.+...|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccC
Q 028447 115 EEN 117 (209)
Q Consensus 115 ~~~ 117 (209)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=1.5e-18 Score=147.41 Aligned_cols=84 Identities=31% Similarity=0.474 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
..+.+|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|+|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7654
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.78 E-value=9e-19 Score=148.15 Aligned_cols=84 Identities=27% Similarity=0.442 Sum_probs=79.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+....++|||+|||+++++++|+++|+.||+|+.|.|+.++.++.++|||||+|.++++|+.||+.||+..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecc
Q 028447 113 FAEE 116 (209)
Q Consensus 113 ~a~~ 116 (209)
++++
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 9865
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=1.8e-18 Score=146.97 Aligned_cols=83 Identities=31% Similarity=0.563 Sum_probs=79.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||+|||..+++++|+++|..||+|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|.|+.|.|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=6.4e-18 Score=110.38 Aligned_cols=70 Identities=34% Similarity=0.628 Sum_probs=66.7
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 40 i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
|||+|||+++++++|.++|.+||.|..+.++.+ .++...+||||+|.+.++|+.|++.|+|..|+|..|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 5788899999999999999999999999999999885
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=6e-18 Score=132.39 Aligned_cols=87 Identities=36% Similarity=0.526 Sum_probs=83.4
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
.+.++..++|-|.||+.++++.+|+++|.+||.|..|.|..|+.||.++|||||.|.+.++|++||..|||.-++...|.
T Consensus 183 ~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 183 MRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred cccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccC
Q 028447 111 VVFAEEN 117 (209)
Q Consensus 111 V~~a~~~ 117 (209)
|+|++++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999874
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=6.3e-18 Score=120.16 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=77.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
...+||||+||+..|+|++|.++|.++|+|..|.|-.|+.+..+.|||||+|-..++|+.||+.++|..|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 028447 115 E 115 (209)
Q Consensus 115 ~ 115 (209)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=3.8e-17 Score=138.26 Aligned_cols=84 Identities=32% Similarity=0.495 Sum_probs=77.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC--eEEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVV 112 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~ 112 (209)
...++|||+|||+.+++++|+++|++||+|+.|.|+.++.++++++||||+|.+.++|++||+.||+..|.+ .+|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999998876 689999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
+|....
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 987654
No 12
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=1.1e-17 Score=130.30 Aligned_cols=83 Identities=29% Similarity=0.436 Sum_probs=76.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.+..-++||||||+|+|..++|..+|++||+|++..|+.|+.+|.++||+||+|.+.+.|+.||+. .+-.|+|++..|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 355678999999999999999999999999999999999999999999999999999999999965 4478999999999
Q ss_pred Eecc
Q 028447 113 FAEE 116 (209)
Q Consensus 113 ~a~~ 116 (209)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8864
No 13
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=2.9e-17 Score=117.81 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=79.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
-.+..|||.++..++++++|.+.|..||+|+.|.|..|..||..+|||+|+|++.++|++||..|||..|.|+.|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
..+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7543
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.70 E-value=1.6e-16 Score=104.22 Aligned_cols=70 Identities=33% Similarity=0.563 Sum_probs=64.8
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 40 i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
|||+|||+.+++++|.++|..||.|..+.+..++. +...++|||+|.+.++|+.|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999999999999874
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.69 E-value=2.8e-16 Score=138.13 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=75.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
...+|||+|||+.+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|++|| .|+|..|.|.+|.|+++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecc
Confidence 3679999999999999999999999999999999999999999999999999999999999 599999999999999875
Q ss_pred c
Q 028447 116 E 116 (209)
Q Consensus 116 ~ 116 (209)
.
T Consensus 167 ~ 167 (457)
T TIGR01622 167 A 167 (457)
T ss_pred h
Confidence 4
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.68 E-value=2.4e-16 Score=140.25 Aligned_cols=84 Identities=25% Similarity=0.318 Sum_probs=79.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.+..++|||+|||+.+++++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|+.||+.|||..|+|..|.|++
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
|...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8644
No 17
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=6.9e-18 Score=126.74 Aligned_cols=79 Identities=29% Similarity=0.474 Sum_probs=76.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..-|||||||+++||.||..+|.+||+|+.|.|+.|+.||+++||||+.|++......||..|||..|.|+.|+|.+..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999998764
No 18
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.4e-17 Score=125.88 Aligned_cols=88 Identities=34% Similarity=0.553 Sum_probs=82.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.+...+||||+|..++++..|...|-+||.|..|.|+.|..+++++|||||+|+..|||.+||..||+.+|.|+.|.|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 028447 114 AEENRKKP 121 (209)
Q Consensus 114 a~~~~~~~ 121 (209)
|++.+.+.
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 98766443
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=3.6e-16 Score=139.58 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=79.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
...++|||+||++++++++|+++|+.||.|..|.|+.++.++..+|||||+|.+.++|..||+.||+..|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
....
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 7543
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.67 E-value=5e-16 Score=124.59 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=70.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.++|||+||++.+++++|++||..||+|..|.|+.+.. ..|||||+|.+.++|+.|| .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999988753 4689999999999999999 5999999999999999864
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=2.4e-16 Score=128.06 Aligned_cols=86 Identities=33% Similarity=0.546 Sum_probs=78.2
Q ss_pred CCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 29 ~~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
......+.++.|+|.|||+...+-||..+|++||+|.+|.|+.+ .-.++||+||+|++.+||++|-.+|||..|.|++
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 34445677899999999999999999999999999999999976 3467999999999999999999999999999999
Q ss_pred EEEEEecc
Q 028447 109 LTVVFAEE 116 (209)
Q Consensus 109 i~V~~a~~ 116 (209)
|+|..|+.
T Consensus 166 IEVn~ATa 173 (376)
T KOG0125|consen 166 IEVNNATA 173 (376)
T ss_pred EEEeccch
Confidence 99999864
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=3.5e-16 Score=139.66 Aligned_cols=81 Identities=31% Similarity=0.505 Sum_probs=77.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
...++|||+||++.+++++|+++|.+||.|..|.|+.|+.+|+++|||||+|.+.++|+.||+.|||..|+|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q 028447 115 E 115 (209)
Q Consensus 115 ~ 115 (209)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.66 E-value=5.5e-16 Score=136.23 Aligned_cols=80 Identities=38% Similarity=0.650 Sum_probs=77.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.++|||+|||..+++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999999874
No 24
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.65 E-value=2e-16 Score=118.97 Aligned_cols=83 Identities=29% Similarity=0.378 Sum_probs=80.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+.++..||||+||+..++++.|.++|-+.|.|..|.|+.|..+...+|||||+|.++|+|+-||+.||...|.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eec
Q 028447 113 FAE 115 (209)
Q Consensus 113 ~a~ 115 (209)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 887
No 25
>smart00362 RRM_2 RNA recognition motif.
Probab=99.64 E-value=1.9e-15 Score=97.99 Aligned_cols=72 Identities=38% Similarity=0.657 Sum_probs=67.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+|||.|||..+++++|.++|.+||.|..+.++.+. +...++|||+|.+.++|+.|++.|++..|.|..|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988775 6778999999999999999999999999999998873
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.6e-15 Score=127.68 Aligned_cols=87 Identities=22% Similarity=0.424 Sum_probs=79.6
Q ss_pred CCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee-cCeE
Q 028447 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL-LGRE 108 (209)
Q Consensus 30 ~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i-~g~~ 108 (209)
.++....++-||||.||.++.|++|.-+|++.|+|-++.||+|+.+|.++|||||+|.+.++|+.||+.||+.+| .|+.
T Consensus 76 eg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ 155 (506)
T KOG0117|consen 76 EGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKL 155 (506)
T ss_pred cCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCE
Confidence 334457799999999999999999999999999999999999999999999999999999999999999999988 4888
Q ss_pred EEEEEecc
Q 028447 109 LTVVFAEE 116 (209)
Q Consensus 109 i~V~~a~~ 116 (209)
|.|+.+..
T Consensus 156 igvc~Sva 163 (506)
T KOG0117|consen 156 LGVCVSVA 163 (506)
T ss_pred eEEEEeee
Confidence 88887643
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=1.3e-15 Score=137.19 Aligned_cols=79 Identities=29% Similarity=0.465 Sum_probs=75.7
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.+|||+|||.++|+++|.++|.+||.|..|.|+.|..+++++|||||+|.+.++|+.||+.||+..|.|+.|.|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999753
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.63 E-value=1.3e-15 Score=135.62 Aligned_cols=80 Identities=24% Similarity=0.442 Sum_probs=72.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec-CeEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V~ 112 (209)
....++|||+|||+++++++|.++|++||.|..|.|+.| .+|.++|||||+|.+.++|++||+.||+.+|. |+.|.|+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 456799999999999999999999999999999999999 78999999999999999999999999998885 6776665
Q ss_pred Ee
Q 028447 113 FA 114 (209)
Q Consensus 113 ~a 114 (209)
++
T Consensus 134 ~S 135 (578)
T TIGR01648 134 IS 135 (578)
T ss_pred cc
Confidence 44
No 29
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=8.5e-16 Score=115.92 Aligned_cols=80 Identities=36% Similarity=0.580 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||+|||.++.+.+|+++|-+||.|.+|.|+..+ ....||||+|++..+|+.||..-+|..++|..|.|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 46799999999999999999999999999999987543 447899999999999999999999999999999999987
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
.-.
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 544
No 30
>PLN03213 repressor of silencing 3; Provisional
Probab=99.63 E-value=1.3e-15 Score=129.75 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=71.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCH--HHHHHHHHhhCCceecCeEEEEEE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP--ADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~--~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
...+||||||++.+++++|..+|..||.|..|.|+ ..+| +|||||+|... .++.+||..|||..|.|+.|+|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45799999999999999999999999999999999 4466 99999999987 689999999999999999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9753
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.61 E-value=4.6e-15 Score=117.35 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=70.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
.+.+|||+||++.+|+++|++||..||+|..|.|+.+. ...+||||+|.+.++|+.|| .|+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 46799999999999999999999999999999999874 44589999999999999999 899999999999998765
Q ss_pred c
Q 028447 116 E 116 (209)
Q Consensus 116 ~ 116 (209)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=3.5e-15 Score=134.44 Aligned_cols=84 Identities=32% Similarity=0.520 Sum_probs=78.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+||++.+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|++||..|||..|+|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999988 5889999999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
|..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 97654
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=4.7e-15 Score=132.17 Aligned_cols=76 Identities=30% Similarity=0.449 Sum_probs=70.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccC--CceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQF--GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
..++|||+||++++++++|+++|++| |+|+.|.++ ++||||+|++.++|++||+.||+.+|+|+.|+|+|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999999877 56999999999999999999999999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2e-15 Score=119.90 Aligned_cols=81 Identities=31% Similarity=0.533 Sum_probs=77.9
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 117 (209)
..|||+-|..+++.++|++.|.+||+|.+++|++|..|++++||+||.|.+.++|+.||..|||.+|+++.|.-.||.-+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q 028447 118 R 118 (209)
Q Consensus 118 ~ 118 (209)
.
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 4
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.59 E-value=6.2e-15 Score=95.16 Aligned_cols=71 Identities=39% Similarity=0.618 Sum_probs=66.8
Q ss_pred EeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 42 VRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 42 V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
|+|||..+++++|+++|+.||.|..+.+..++.++.+.++|||+|.+.++|+.|+..|++..+.|..|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999888788889999999999999999999999999999998873
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=7.7e-15 Score=116.62 Aligned_cols=79 Identities=23% Similarity=0.397 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....|+||||||+..+++++|.+.|..||.|.+|.|.++ +||+||.|++.|.|..||..||+.+|.|+.|+|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 356899999999999999999999999999999999977 79999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
-+...
T Consensus 235 GKe~~ 239 (321)
T KOG0148|consen 235 GKEGD 239 (321)
T ss_pred cccCC
Confidence 87543
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.58 E-value=8.1e-15 Score=118.43 Aligned_cols=80 Identities=40% Similarity=0.565 Sum_probs=77.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
..+|||+|||+.+++++|.++|..||.|..+.|+.++.++..+|||||+|.+.++|+.||+.|++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999753
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=9.3e-15 Score=115.68 Aligned_cols=85 Identities=32% Similarity=0.597 Sum_probs=80.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.+..+.|+|.-||.++|+++|+.+|...|+|+.|+++.|+.+|.+.||+||.|.+++||++||..|||..|..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
|.+..
T Consensus 118 ARPSs 122 (360)
T KOG0145|consen 118 ARPSS 122 (360)
T ss_pred ccCCh
Confidence 97643
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.58 E-value=2.4e-14 Score=93.24 Aligned_cols=74 Identities=41% Similarity=0.642 Sum_probs=68.4
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
+|+|+|||+.+++++|.++|+.||.|..+.+..+..+ ...++|||+|.+.++|+.|++.|++..++|..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999877644 6689999999999999999999999999999999864
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.58 E-value=1.4e-14 Score=128.14 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCC-CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 35 DLPTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 35 ~~~~~i~V~nL~~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.+.++|||+||++ .+++++|.++|+.||.|..|.|+.++ +|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998764 69999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
++...
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 87543
No 41
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=2e-14 Score=98.78 Aligned_cols=80 Identities=31% Similarity=0.524 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
.....|||.|||+.+|.+++.++|.+||.|..|.|-..+ ..+|-|||.|++..+|.+|++.|+|..+++..|.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 456789999999999999999999999999999998665 44899999999999999999999999999999999987
Q ss_pred ccC
Q 028447 115 EEN 117 (209)
Q Consensus 115 ~~~ 117 (209)
.+.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 643
No 42
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.3e-15 Score=121.44 Aligned_cols=84 Identities=25% Similarity=0.411 Sum_probs=79.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..++.+.|||+.|.+.|+.++|+-+|..||+|..|.|+.|..||....||||+|++.++|++|+-+|++..|+.+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecc
Q 028447 113 FAEE 116 (209)
Q Consensus 113 ~a~~ 116 (209)
|+..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 9753
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=3.1e-14 Score=112.77 Aligned_cols=82 Identities=33% Similarity=0.471 Sum_probs=78.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
.+.+|||-||.++++|..|+++|.+||.|..|+|+.|..|.+++||+||.+.+.++|..||..|||..|.++.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cC
Q 028447 116 EN 117 (209)
Q Consensus 116 ~~ 117 (209)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 44
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.56 E-value=9.7e-15 Score=125.81 Aligned_cols=85 Identities=29% Similarity=0.488 Sum_probs=80.5
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 117 (209)
..|||||||+++++++|..+|...|.|..+.++.|+.||..+||||++|.+.++|+.||..|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCh
Q 028447 118 RKKPS 122 (209)
Q Consensus 118 ~~~~~ 122 (209)
.....
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 54433
No 45
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.54 E-value=8.8e-15 Score=117.35 Aligned_cols=73 Identities=29% Similarity=0.565 Sum_probs=69.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
+.+|||||||.++++.+|+.+|++||+|.+|.|+ +.||||..++...|+.||..|||..|+|..|+|+-++.
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 4689999999999999999999999999999999 67999999999999999999999999999999999886
Q ss_pred C
Q 028447 117 N 117 (209)
Q Consensus 117 ~ 117 (209)
+
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 6
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.54 E-value=3.3e-14 Score=125.82 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=69.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh--CCceecCeEEEEEE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM--DGYLLLGRELTVVF 113 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~i~g~~i~V~~ 113 (209)
+..+|||+|||+.+++++|.++|++||.|..|.|+.+ ++||||+|.+.++|+.||+.| ++..|.|++|.|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3679999999999999999999999999999999854 589999999999999999864 77899999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8643
No 47
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1e-14 Score=122.44 Aligned_cols=86 Identities=30% Similarity=0.550 Sum_probs=78.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc-eecC--eEEEEEE
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY-LLLG--RELTVVF 113 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~i~g--~~i~V~~ 113 (209)
..+|||+.|+..++|++|.++|.+||.|++|.|+.+. .+.++|||||+|.+.+.|..||+.|||. .|.| .+|.|+|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 6799999999999999999999999999999999986 7889999999999999999999999996 4555 7999999
Q ss_pred eccCCCCChH
Q 028447 114 AEENRKKPSE 123 (209)
Q Consensus 114 a~~~~~~~~~ 123 (209)
|.+++.+..+
T Consensus 203 ADtqkdk~~~ 212 (510)
T KOG0144|consen 203 ADTQKDKDGK 212 (510)
T ss_pred cccCCCchHH
Confidence 9987766544
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.8e-14 Score=119.40 Aligned_cols=76 Identities=32% Similarity=0.510 Sum_probs=70.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
-+.|||.||+.+||++.|+++|++||+|+.|+.+ +.||||.|.+.++|.+|++.|||++|+|..|.|.+|++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc--------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 4689999999999999999999999999999877 55999999999999999999999999999999999997
Q ss_pred CCCC
Q 028447 117 NRKK 120 (209)
Q Consensus 117 ~~~~ 120 (209)
..++
T Consensus 331 ~~k~ 334 (506)
T KOG0117|consen 331 VDKK 334 (506)
T ss_pred hhhh
Confidence 6543
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=7.7e-14 Score=120.16 Aligned_cols=83 Identities=31% Similarity=0.530 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
.+...|+|.||||.|...+|+.+|..||.|.+|.|+....++. +|||||+|.+..+|..||+.||+.+|+|++|-|.||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 3467899999999999999999999999999999997765555 599999999999999999999999999999999999
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
-++.
T Consensus 194 V~Kd 197 (678)
T KOG0127|consen 194 VDKD 197 (678)
T ss_pred cccc
Confidence 7654
No 50
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.49 E-value=3.8e-14 Score=122.14 Aligned_cols=79 Identities=34% Similarity=0.656 Sum_probs=75.5
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccCC
Q 028447 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENR 118 (209)
Q Consensus 40 i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~~ 118 (209)
|||+||+.++++++|..+|+.||.|..|.+++|..||.++||+||+|.+.++|.+|+..|||++|.|+.|+|...+..-
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876543
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.49 E-value=2.3e-13 Score=85.35 Aligned_cols=56 Identities=36% Similarity=0.603 Sum_probs=50.9
Q ss_pred HHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 54 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 54 L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
|.++|++||+|..+.+..+. .++|||+|.+.++|+.|+..|||..|+|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998653 589999999999999999999999999999999986
No 52
>smart00361 RRM_1 RNA recognition motif.
Probab=99.47 E-value=2.4e-13 Score=89.24 Aligned_cols=61 Identities=26% Similarity=0.416 Sum_probs=54.6
Q ss_pred HHHHHHhhc----cCCceEEEE-eecCCCC--CCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 51 PEDLRGPFG----QFGRLKDIY-LPRDYYT--GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 51 ~~~L~~~f~----~~G~i~~~~-i~~~~~~--g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
+++|.++|. +||.|..|. |+.++.+ +..+|||||+|.+.++|++|++.|||..|+|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999985 6666656 889999999999999999999999999999999986
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=9.1e-14 Score=116.73 Aligned_cols=85 Identities=27% Similarity=0.470 Sum_probs=76.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce-ecC--eEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL-LLG--RELTV 111 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-i~g--~~i~V 111 (209)
...-+||||.||..++|.||.++|++||.|.+|.|++|+.|+..+|||||.|.+.++|.+|+.+||+.. |-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 345689999999999999999999999999999999999999999999999999999999999999964 544 68999
Q ss_pred EEeccCCC
Q 028447 112 VFAEENRK 119 (209)
Q Consensus 112 ~~a~~~~~ 119 (209)
++|.....
T Consensus 112 k~Ad~E~e 119 (510)
T KOG0144|consen 112 KYADGERE 119 (510)
T ss_pred cccchhhh
Confidence 99875543
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.45 E-value=4.7e-13 Score=119.27 Aligned_cols=79 Identities=22% Similarity=0.408 Sum_probs=73.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.+|||||+|+.++++.||..+|+.||+|..|.|+.. .+||||++....+|++|+.+|.+..+.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 579999999999999999999999999999998844 89999999999999999999999999999999999986
Q ss_pred CCCCC
Q 028447 117 NRKKP 121 (209)
Q Consensus 117 ~~~~~ 121 (209)
+..+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65554
No 55
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=6.5e-14 Score=115.59 Aligned_cols=79 Identities=32% Similarity=0.518 Sum_probs=75.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
..|.||||.|.+++.|+.|...|..||.|+.|.|.+|+.|++++|||||+|+-+|.|+.|++.|||..++|+.|+|...
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999999999753
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.9e-13 Score=115.25 Aligned_cols=85 Identities=32% Similarity=0.473 Sum_probs=77.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh-----CC-ceecCe
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM-----DG-YLLLGR 107 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l-----~g-~~i~g~ 107 (209)
.+...+|||.|||+++|+++|.+.|.+||+|..+.|+.++.|+.+.|.|||.|.+..+|++||... .| ..|+|+
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 355689999999999999999999999999999999999999999999999999999999999876 33 679999
Q ss_pred EEEEEEeccCC
Q 028447 108 ELTVVFAEENR 118 (209)
Q Consensus 108 ~i~V~~a~~~~ 118 (209)
.|+|..|-...
T Consensus 369 ~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 369 LLKVTLAVTRK 379 (678)
T ss_pred EEeeeeccchH
Confidence 99999986543
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.7e-13 Score=109.00 Aligned_cols=86 Identities=23% Similarity=0.333 Sum_probs=81.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+-+.+|+|||-.||.+..+.+|..+|-.||.|+..++..|..|..+++|+||.|.++..|+.||.+|||+.|+-+.|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
+..++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 987654
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.41 E-value=2.3e-13 Score=109.26 Aligned_cols=76 Identities=22% Similarity=0.452 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|+|+||.+.++.++|.+.|++||.|++|+|+ ++|+||.|+-.++|..||+.|++.+|.|+.|+|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 3568899999999999999999999999999999999 67999999999999999999999999999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
++..
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 8753
No 59
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.38 E-value=7.6e-13 Score=99.77 Aligned_cols=87 Identities=33% Similarity=0.490 Sum_probs=79.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEE-EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
+.+.+|||+||.+++++..|.++|..||.|.. -.++.+..||.+.+||||.|.+.+.+.+||..|||+.+++++|.|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 55689999999999999999999999998865 47888889999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 028447 114 AEENRKKP 121 (209)
Q Consensus 114 a~~~~~~~ 121 (209)
+..+..+.
T Consensus 174 a~k~~~kg 181 (203)
T KOG0131|consen 174 AFKKDTKG 181 (203)
T ss_pred EEecCCCc
Confidence 98765443
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.36 E-value=3.1e-12 Score=113.93 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=61.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccC------------CceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQF------------GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~------------G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
....+|||+|||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|+.|| .|+|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 345689999999999999999999875 234444443 34799999999999999999 69999
Q ss_pred eecCeEEEEEEec
Q 028447 103 LLLGRELTVVFAE 115 (209)
Q Consensus 103 ~i~g~~i~V~~a~ 115 (209)
.|.|..|+|....
T Consensus 246 ~~~g~~l~v~r~~ 258 (509)
T TIGR01642 246 IYSNVFLKIRRPH 258 (509)
T ss_pred EeeCceeEecCcc
Confidence 9999999987543
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.31 E-value=8.3e-12 Score=105.31 Aligned_cols=79 Identities=28% Similarity=0.441 Sum_probs=72.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhc-cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
...+||.|||+++.|++|+++|. +.|+|+.|.+..|. .|+.+|+|.|||+++|.+++|++.||.+.+.|++|+|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 34599999999999999999995 78999999999885 89999999999999999999999999999999999998764
Q ss_pred c
Q 028447 116 E 116 (209)
Q Consensus 116 ~ 116 (209)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 3
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.30 E-value=7.6e-12 Score=97.50 Aligned_cols=83 Identities=24% Similarity=0.478 Sum_probs=74.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHH----hhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRG----PFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~----~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
+.++..||||.||+..+..++|+. +|++||+|..|.+.. +.+.+|-|||.|.+.+.|-.|+.+|+|..+.|++
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 345566999999999999998877 999999999987764 5678999999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 028447 109 LTVVFAEENR 118 (209)
Q Consensus 109 i~V~~a~~~~ 118 (209)
+.|+||..+.
T Consensus 82 mriqyA~s~s 91 (221)
T KOG4206|consen 82 MRIQYAKSDS 91 (221)
T ss_pred hheecccCcc
Confidence 9999998654
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=95.18 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=77.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccC-CceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQF-GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
+.....-+||..||..+.+.+|..+|.+| |.|..+.+..++.||.++|||||+|++.+.|+-|.+.||+..|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34556789999999999999999999988 77888888899999999999999999999999999999999999999999
Q ss_pred EEeccC
Q 028447 112 VFAEEN 117 (209)
Q Consensus 112 ~~a~~~ 117 (209)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 987655
No 64
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=2.7e-12 Score=100.67 Aligned_cols=72 Identities=33% Similarity=0.561 Sum_probs=68.0
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 117 (209)
..|||++||+.+.+.+|+.||..||+|..|.|+ .||+||+|++..+|..||..||+.+|+|..|.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999999887 789999999999999999999999999999999998853
No 65
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.25 E-value=1.5e-11 Score=106.83 Aligned_cols=83 Identities=25% Similarity=0.386 Sum_probs=77.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
..+.+|||.+|...|...+|+.+|.+||+|+..+||.+..+....+|+||++.+.++|.+||..||-++|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 45678999999999999999999999999999999999888888999999999999999999999999999999999998
Q ss_pred ccC
Q 028447 115 EEN 117 (209)
Q Consensus 115 ~~~ 117 (209)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 754
No 66
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=3.4e-11 Score=98.95 Aligned_cols=80 Identities=19% Similarity=0.346 Sum_probs=70.4
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh-CCceecCeEE
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM-DGYLLLGREL 109 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~i 109 (209)
.+++..-++|||++|...+++.+|.++|.+||+|..|.++.. +++|||+|.+.+.|+.|...+ +...|+|..|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 456667789999999999999999999999999999998854 679999999999999887654 5567899999
Q ss_pred EEEEecc
Q 028447 110 TVVFAEE 116 (209)
Q Consensus 110 ~V~~a~~ 116 (209)
+|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999887
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.8e-11 Score=102.49 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=71.3
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccCCC
Q 028447 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 119 (209)
Q Consensus 40 i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 119 (209)
|||.||+..++..+|.++|..||+|..|+++.+. +| .+|| ||+|++++.|++||+.|||..+.|++|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999886 44 7899 9999999999999999999999999999988765443
No 68
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=3.1e-11 Score=99.94 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..+.|||..+++++.++||+.+|+.||+|..|.+..++.++.++||+||+|.+......||..||-+.|+|+.|.|-.+-
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999997654
No 69
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.20 E-value=6.6e-11 Score=94.72 Aligned_cols=83 Identities=27% Similarity=0.334 Sum_probs=75.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
.-+++|+|.||++.|+++||+++|..||.++.+.|..++ +|.+.|.|-|.|...++|+.||+.|||..++|..|+++..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 334789999999999999999999999988888887775 8899999999999999999999999999999999999987
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
....
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6544
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.18 E-value=2.2e-11 Score=101.06 Aligned_cols=81 Identities=31% Similarity=0.445 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||++|+|.++++.|.+.|.+||+|.+|.++.|+.++...||+||+|++.+.+..+| ...-+.|+|+.|.++-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 6889999999999999999999999999999999999999999999999999988888777 445578899998888776
Q ss_pred cC
Q 028447 116 EN 117 (209)
Q Consensus 116 ~~ 117 (209)
+.
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 43
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=5.7e-11 Score=105.36 Aligned_cols=79 Identities=32% Similarity=0.505 Sum_probs=70.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCC---CcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTG---EPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g---~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.++|||.||++.++.++|...|.++|.|..+.|.+.+... .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 4559999999999999999999999999999887655221 2459999999999999999999999999999999999
Q ss_pred ec
Q 028447 114 AE 115 (209)
Q Consensus 114 a~ 115 (209)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=3.1e-11 Score=107.05 Aligned_cols=85 Identities=33% Similarity=0.615 Sum_probs=78.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
...++|+|.|||+.++..+|+++|..||+|..|.|+.....+.+.|||||+|-++.+|..|+++|..+-|.|+.|.++||
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 44689999999999999999999999999999999987666778999999999999999999999999999999999999
Q ss_pred ccCCC
Q 028447 115 EENRK 119 (209)
Q Consensus 115 ~~~~~ 119 (209)
+....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 86543
No 73
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.12 E-value=7.9e-11 Score=97.77 Aligned_cols=85 Identities=26% Similarity=0.374 Sum_probs=77.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
...+|||++|+.++++++|+++|++||.|..+.++.|..+...++|+||+|.+.+.+.+++ .+.-+.|+|+.|.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 4569999999999999999999999999999999999999999999999999998888887 567889999999999998
Q ss_pred cCCCCC
Q 028447 116 ENRKKP 121 (209)
Q Consensus 116 ~~~~~~ 121 (209)
++....
T Consensus 175 pk~~~~ 180 (311)
T KOG4205|consen 175 PKEVMQ 180 (311)
T ss_pred chhhcc
Confidence 765433
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.6e-10 Score=97.39 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=69.6
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 117 (209)
..|||| +.+|+..|.++|..+|.|..+.++.|. | +.|||||.|.++.+|+.||+.||...|.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 899999999999999999999999998 6 8999999999999999999999999999999999998644
No 75
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.09 E-value=7.3e-10 Score=76.75 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=70.5
Q ss_pred CeEEEeCCCCCCCHHHHHHhhcc--CCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec----CeEEEE
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQ--FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL----GRELTV 111 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~----g~~i~V 111 (209)
|||.|.|||...+.++|.+++.. .|....+.++.|..++.+.|||||.|.+++.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999988864 367788899999999999999999999999999999999998875 467888
Q ss_pred EEeccC
Q 028447 112 VFAEEN 117 (209)
Q Consensus 112 ~~a~~~ 117 (209)
.||.-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888643
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.09 E-value=2e-10 Score=97.03 Aligned_cols=77 Identities=27% Similarity=0.434 Sum_probs=68.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....|+|||.|||.++||+.|++-|..||.|..+.|+ +.|+.+| .|.|.++++|+.||..|+|..|+|+.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 34567889999999999999999999999999998885 3566665 899999999999999999999999999998
Q ss_pred Ee
Q 028447 113 FA 114 (209)
Q Consensus 113 ~a 114 (209)
|.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 74
No 77
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=1.3e-10 Score=92.70 Aligned_cols=82 Identities=27% Similarity=0.456 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce-ecC--eEEEEE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL-LLG--RELTVV 112 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-i~g--~~i~V~ 112 (209)
...+||||.|...-.|+|+..+|..||.|.+|.+...+ +|.++|+|||.|.+..+|+.||..|||.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 46789999999999999999999999999999998776 78899999999999999999999999964 444 579999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
|+...+
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 987544
No 78
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.08 E-value=7e-10 Score=95.46 Aligned_cols=81 Identities=27% Similarity=0.359 Sum_probs=67.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
....+|||.|||.+++..+|+++|..||.|+...|..-...++..+||||+|.+.+.++.||++ +-..|++++|.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 4456699999999999999999999999999876654332344449999999999999999965 578899999999986
Q ss_pred cc
Q 028447 115 EE 116 (209)
Q Consensus 115 ~~ 116 (209)
..
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 54
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.08 E-value=2.5e-10 Score=91.40 Aligned_cols=83 Identities=22% Similarity=0.396 Sum_probs=76.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
......|||+|+...++.++|+..|+.||.|..+.|+.++..+.++|||||+|.+.+.++.|++ |++..|.|..|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456789999999999999999999999999999999999999999999999999999999996 999999999999998
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7654
No 80
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=8.4e-11 Score=91.24 Aligned_cols=85 Identities=21% Similarity=0.223 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
.+.++...||||+||...++++-|.++|-+.|.|..|.|..++ .++.+ ||||+|+++..+.-|++.|||..+.+..|+
T Consensus 3 aaaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 3 AAAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred CCCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 3456778899999999999999999999999999999998775 45555 999999999999999999999999999999
Q ss_pred EEEeccC
Q 028447 111 VVFAEEN 117 (209)
Q Consensus 111 V~~a~~~ 117 (209)
|++-...
T Consensus 81 ~~~r~G~ 87 (267)
T KOG4454|consen 81 RTLRCGN 87 (267)
T ss_pred cccccCC
Confidence 8876443
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.03 E-value=8.3e-10 Score=90.85 Aligned_cols=85 Identities=24% Similarity=0.255 Sum_probs=74.7
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceE--------EEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK--------DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
.++....+.|||.|||.++|.+++.++|.+||.|. .|+|..+. .|+.+|-|+|.|...+.++.||+.|++.
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcc
Confidence 34456678899999999999999999999999875 35666665 5899999999999999999999999999
Q ss_pred eecCeEEEEEEecc
Q 028447 103 LLLGRELTVVFAEE 116 (209)
Q Consensus 103 ~i~g~~i~V~~a~~ 116 (209)
.|.|..|.|+.|+-
T Consensus 207 ~~rg~~~rVerAkf 220 (382)
T KOG1548|consen 207 ELRGKKLRVERAKF 220 (382)
T ss_pred cccCcEEEEehhhh
Confidence 99999999998864
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.97 E-value=6.6e-09 Score=81.06 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeec-CCCCCCcceEEEEEecCHHHHHHHHHhhCCceec---CeE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR-DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL---GRE 108 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~-~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~~ 108 (209)
+.+.-.||||.+||.++..-+|..+|..|--.+.+.|.. ++....++-+|||+|.+..+|++|+.+|||..|+ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 345568999999999999999999999886555555543 3333345689999999999999999999999986 689
Q ss_pred EEEEEeccCC
Q 028447 109 LTVVFAEENR 118 (209)
Q Consensus 109 i~V~~a~~~~ 118 (209)
|.|++|+...
T Consensus 110 LhiElAKSNt 119 (284)
T KOG1457|consen 110 LHIELAKSNT 119 (284)
T ss_pred eEeeehhcCc
Confidence 9999997544
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.95 E-value=2.2e-09 Score=95.44 Aligned_cols=84 Identities=25% Similarity=0.389 Sum_probs=74.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCC---CCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT---GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
.+..++|||+||++.++++.|...|..||.|..|.|++.... .....++||.|-+..+|+.|++.|+|..+.+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 566789999999999999999999999999999999876522 23467899999999999999999999999999999
Q ss_pred EEEeccC
Q 028447 111 VVFAEEN 117 (209)
Q Consensus 111 V~~a~~~ 117 (209)
+-|+++.
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998643
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=2e-09 Score=93.49 Aligned_cols=71 Identities=25% Similarity=0.412 Sum_probs=64.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
...-+|+|.|||..|++++|..+|+.||+|..|..-.. ..+.+||+|-++.+|+.|+++|++.+|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34568999999999999999999999999999766544 389999999999999999999999999998887
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=3.4e-09 Score=92.47 Aligned_cols=86 Identities=28% Similarity=0.428 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.+..+.|||++||..+++.++.+++..||.+....++.+..+|.++||||.+|.+......|+..|||..+++.+|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
|.....
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 875543
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.78 E-value=2.6e-08 Score=85.52 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=65.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
....-|-+.+|||++|++||.+||+.+ .|..+.+.. .+|+..|-|||+|++.+++++|++ ++-..|..+.|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 445667788999999999999999998 466665554 479999999999999999999994 5878888899999777
Q ss_pred ccC
Q 028447 115 EEN 117 (209)
Q Consensus 115 ~~~ 117 (209)
..+
T Consensus 84 ~~~ 86 (510)
T KOG4211|consen 84 GGA 86 (510)
T ss_pred CCc
Confidence 543
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.77 E-value=4.8e-09 Score=83.22 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
+....||+|.|..+++.+.|-..|.+|-......++.++.||+++||+||-|.+..++..|+..|+|..++.++|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 44679999999999999999999999988888889999999999999999999999999999999999999999988765
Q ss_pred ccC
Q 028447 115 EEN 117 (209)
Q Consensus 115 ~~~ 117 (209)
.++
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 544
No 88
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=2.1e-08 Score=78.90 Aligned_cols=71 Identities=31% Similarity=0.439 Sum_probs=63.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
....+.|+|.||+..+.+++|.+.|.++|++....+. .+++||+|.+.++|..||..|++..|.++.|.|.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 4557789999999999999999999999999555443 6799999999999999999999999999999993
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.76 E-value=7.8e-09 Score=85.67 Aligned_cols=84 Identities=27% Similarity=0.322 Sum_probs=75.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceE--------EEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK--------DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 105 (209)
.....+|||-+|+..+++++|.++|.++|.|. .|+|-++++|+..++-|.|.|++...|++||.-++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34566999999999999999999999999875 4678888899999999999999999999999999999999
Q ss_pred CeEEEEEEeccC
Q 028447 106 GRELTVVFAEEN 117 (209)
Q Consensus 106 g~~i~V~~a~~~ 117 (209)
+..|+|.+|...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999887643
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.71 E-value=5.7e-08 Score=81.79 Aligned_cols=77 Identities=26% Similarity=0.428 Sum_probs=69.9
Q ss_pred CCeEEEeCCCCC-CCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 37 PTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 37 ~~~i~V~nL~~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
.+.|.|.||... +|.+.|..+|..||.|..|+|..++ +.-|+|+|.+...|+.|+..|+|+.|.|++|.|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 578889999765 8999999999999999999999876 4679999999999999999999999999999999998
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
...
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 654
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.62 E-value=1.4e-07 Score=62.78 Aligned_cols=71 Identities=25% Similarity=0.432 Sum_probs=48.5
Q ss_pred CeEEEeCCCCCCCHHH----HHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 38 TSLLVRNLRHDCRPED----LRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~----L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+.|||.|||.+.+... |+.++..+| +|..| . .+.|+|.|.+.+.|..|.+.|+|..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988655 567777886 56544 2 4679999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
|.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 985443
No 92
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.57 E-value=6.1e-08 Score=75.76 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=55.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 105 (209)
..-.||||.||..+|+|++|+.+|..|-...-++|.. ...-..|||+|++.+.|..|+..|+|..|.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 3346899999999999999999999997666555542 133568999999999999999999998763
No 93
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.53 E-value=4.2e-07 Score=71.19 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=69.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec-CeEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTV 111 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V 111 (209)
...+..++|+.|||.+++.+.|..+|++|.....|.++... .+.|||+|.+...|..|...|++..|- ...|.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35677899999999999999999999999988888888554 789999999999999999999998886 788888
Q ss_pred EEec
Q 028447 112 VFAE 115 (209)
Q Consensus 112 ~~a~ 115 (209)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 8875
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.52 E-value=1.2e-06 Score=73.23 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 34 RDLPTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+++.++|-+|... ++-+-|..+|..||.|+.|++++.+ .|-|+|++.+..+.+.||..||+..+-|.+|.|+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 456788999999875 6678899999999999999999765 7889999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
+++....
T Consensus 359 ~SkQ~~v 365 (494)
T KOG1456|consen 359 VSKQNFV 365 (494)
T ss_pred ecccccc
Confidence 9875543
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.52 E-value=1.9e-07 Score=65.93 Aligned_cols=72 Identities=24% Similarity=0.373 Sum_probs=45.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc-----eecCeEEEE
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY-----LLLGRELTV 111 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-----~i~g~~i~V 111 (209)
++.|+|.+++..++.++|+++|..||.|..|.+... ...|||-|.+.+.|+.|+..+... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 357899999999999999999999999999998744 457999999999999998876443 566666666
Q ss_pred EEe
Q 028447 112 VFA 114 (209)
Q Consensus 112 ~~a 114 (209)
++-
T Consensus 75 ~vL 77 (105)
T PF08777_consen 75 EVL 77 (105)
T ss_dssp E--
T ss_pred EEC
Confidence 654
No 96
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.51 E-value=4e-08 Score=85.40 Aligned_cols=80 Identities=23% Similarity=0.426 Sum_probs=73.7
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 117 (209)
.+||+-.|...++..+|.+||..+|+|..|.|+.|..++..+|.|||+|.+.+.+..|| .|.|..+.|.+|.|+.....
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHH
Confidence 47788888888999999999999999999999999999999999999999999999999 99999999999999986544
Q ss_pred C
Q 028447 118 R 118 (209)
Q Consensus 118 ~ 118 (209)
+
T Consensus 259 k 259 (549)
T KOG0147|consen 259 K 259 (549)
T ss_pred H
Confidence 3
No 97
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.45 E-value=1.1e-07 Score=78.82 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=68.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC--ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
..++|||||-|+||++||.+.+...| .|.++++..+..+|.++|||+|...+...+++.++.|.-++|.|+.-.|.-.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35899999999999999999998776 6778888889999999999999999988889999999999999976555444
Q ss_pred c
Q 028447 115 E 115 (209)
Q Consensus 115 ~ 115 (209)
+
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.41 E-value=9.7e-07 Score=76.08 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=64.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEE-EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.....|-|.+||+.||++||.+||+..-.|.. |.|+.++ .+...|-|||.|++.+.|++||.. |...|..+.|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 34668889999999999999999997754444 5556555 566899999999999999999954 77888999999876
Q ss_pred ec
Q 028447 114 AE 115 (209)
Q Consensus 114 a~ 115 (209)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 64
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.37 E-value=9.5e-07 Score=72.98 Aligned_cols=81 Identities=25% Similarity=0.396 Sum_probs=62.5
Q ss_pred CCCeEEEeCCCCCCCHHH----H--HHhhccCCceEEEEeecCCC-CCCcceE--EEEEecCHHHHHHHHHhhCCceecC
Q 028447 36 LPTSLLVRNLRHDCRPED----L--RGPFGQFGRLKDIYLPRDYY-TGEPRGF--GFVQYIDPADAADAKYHMDGYLLLG 106 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~----L--~~~f~~~G~i~~~~i~~~~~-~g~~~g~--afV~f~~~~~a~~Ai~~l~g~~i~g 106 (209)
+.+-|||-+|++.+..++ | .++|.+||+|..|.|.+... .....+. .||+|...++|..||.+++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999998876555 2 58999999999987754321 1111222 4999999999999999999999999
Q ss_pred eEEEEEEecc
Q 028447 107 RELTVVFAEE 116 (209)
Q Consensus 107 ~~i~V~~a~~ 116 (209)
+.|++.|...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999988643
No 100
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=6e-06 Score=63.01 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec
Q 028447 26 RGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (209)
Q Consensus 26 ~~~~~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 105 (209)
.+..+++.......|+|.+||....|+||++.+.+-|.|+...+.+| |++.|+|...|+.+-||.+|+...+.
T Consensus 104 gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 104 GGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred CcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 33455667777889999999999999999999999999998888764 58999999999999999999987654
Q ss_pred --CeEEEEEE
Q 028447 106 --GRELTVVF 113 (209)
Q Consensus 106 --g~~i~V~~ 113 (209)
|....|.+
T Consensus 177 seGe~~yirv 186 (241)
T KOG0105|consen 177 SEGETAYIRV 186 (241)
T ss_pred CcCcEeeEEe
Confidence 44444443
No 101
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.28 E-value=5.5e-07 Score=74.50 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=74.7
Q ss_pred CCCCCeEE-EeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 34 RDLPTSLL-VRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~-V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+..++| |++|+..+++++|+.+|..+|.|..+.+..+..++...|||||+|.+...+..++.. +...+.+.+|.|+
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34556666 999999999999999999999999999999999999999999999999999999877 7889999999999
Q ss_pred EeccC
Q 028447 113 FAEEN 117 (209)
Q Consensus 113 ~a~~~ 117 (209)
+..+.
T Consensus 260 ~~~~~ 264 (285)
T KOG4210|consen 260 EDEPR 264 (285)
T ss_pred cCCCC
Confidence 87654
No 102
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.6e-06 Score=75.87 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=63.6
Q ss_pred CCCCeEEEeCCCCCCC------HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec-Ce
Q 028447 35 DLPTSLLVRNLRHDCR------PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GR 107 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t------~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~ 107 (209)
...+.|+|.|+|.--. ...|..+|+++|+|+.+.++.+..+| ++||.|++|++..+|+.|++.|||+.|+ +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4467899999986422 34567889999999999999887555 8999999999999999999999999886 45
Q ss_pred EEEEEE
Q 028447 108 ELTVVF 113 (209)
Q Consensus 108 ~i~V~~ 113 (209)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 566654
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.23 E-value=7.9e-06 Score=68.45 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=63.9
Q ss_pred CCCCCeEEEeCCC--CCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC--eEE
Q 028447 34 RDLPTSLLVRNLR--HDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--REL 109 (209)
Q Consensus 34 ~~~~~~i~V~nL~--~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i 109 (209)
..+.+.|.+.=|. +-+|.+.|..+....|+|..|.|++. + ---|.|||++.+.|++|..+|||..|.. ..|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 3445555555444 45899999999999999999988754 3 3459999999999999999999998864 589
Q ss_pred EEEEeccCC
Q 028447 110 TVVFAEENR 118 (209)
Q Consensus 110 ~V~~a~~~~ 118 (209)
+|+||++..
T Consensus 192 KIeyAkP~r 200 (494)
T KOG1456|consen 192 KIEYAKPTR 200 (494)
T ss_pred EEEecCcce
Confidence 999998764
No 104
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.20 E-value=1.3e-06 Score=76.88 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=64.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhc-cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee---cCeEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL---LGREL 109 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i---~g~~i 109 (209)
..+.+.|||.||-.-+|..+|++++. ..|.|+.++|- +-+..|||.|.+.++|.+.+.+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD------kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD------KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHH------HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 45678999999999999999999999 56666666432 2378899999999999999999999876 56889
Q ss_pred EEEEecc
Q 028447 110 TVVFAEE 116 (209)
Q Consensus 110 ~V~~a~~ 116 (209)
.|.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9998754
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.15 E-value=7.4e-06 Score=73.43 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=64.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.|-|.|+|++++-+||.+||..|-.+-.-.+++-.+.|+..|.|.|.|++.++|..|+..|+++.|..++|+|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 677889999999999999999997664433344446899999999999999999999999999999999998865
No 106
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.12 E-value=9.4e-07 Score=70.46 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=57.1
Q ss_pred HHHHHhhc-cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccCCCCChH
Q 028447 52 EDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123 (209)
Q Consensus 52 ~~L~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~~~~~~~ 123 (209)
++|..+|+ +||+|+++.|..+. .-...|-+||.|...++|++|++.||+.+|.|++|.+++......+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~ 154 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAI 154 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhh
Confidence 45555666 99999998776543 3345788999999999999999999999999999999998765544433
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.10 E-value=3.3e-06 Score=70.91 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=68.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCc-eEE--EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGR-LKD--IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~-i~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
.....+|-+.+||+.++.+||.+||..|.. |.. |.|+.+. .|.+.|-|||+|.+.++|.+|....+.+.+..+.|.
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 344668999999999999999999998873 333 6777664 688899999999999999999999999888899888
Q ss_pred EEEec
Q 028447 111 VVFAE 115 (209)
Q Consensus 111 V~~a~ 115 (209)
|-.+.
T Consensus 356 vfp~S 360 (508)
T KOG1365|consen 356 VFPCS 360 (508)
T ss_pred Eeecc
Confidence 87653
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.07 E-value=9.1e-06 Score=50.07 Aligned_cols=53 Identities=28% Similarity=0.464 Sum_probs=42.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 96 (209)
++.|-|.|++....+.. ..+|..||+|..+.+... ..+.||.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 35788999998876554 558889999999887622 568999999999999985
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.04 E-value=2.6e-05 Score=54.42 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=52.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCC-------CCCCcceEEEEEecCHHHHHHHHHhhCCceecCe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDY-------YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~-------~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 107 (209)
...+-|.|.++|... ...|.+.|++||.|.+..-+... ..........|+|.+..+|++|| ..||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred cCCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 345678999999984 56677889999999876411000 00123568899999999999999 5699999986
Q ss_pred E-EEEEEec
Q 028447 108 E-LTVVFAE 115 (209)
Q Consensus 108 ~-i~V~~a~ 115 (209)
. |-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 4 4477764
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=1.8e-05 Score=69.51 Aligned_cols=65 Identities=26% Similarity=0.478 Sum_probs=53.9
Q ss_pred HHHHHhhccCCceEEEEeecCCC---CCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 52 EDLRGPFGQFGRLKDIYLPRDYY---TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 52 ~~L~~~f~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
++|+..+.+||.|..|.+..+.. ..-..|..||+|.+.++|+.|+.+|+|.+|.|+.|.+.|...
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34566678999999999887622 233567899999999999999999999999999999988653
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.02 E-value=1.9e-05 Score=65.52 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=63.1
Q ss_pred CCCCCeEEEeCCCC----CCC-------HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 34 RDLPTSLLVRNLRH----DCR-------PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 34 ~~~~~~i~V~nL~~----~~t-------~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
....++|+|.||-. ..+ +++|.+...+||.|..|.|. ...+.|.+-|.|.+.++|..||+.|+|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 34567888888732 223 35667778999999999876 2356899999999999999999999999
Q ss_pred eecCeEEEEEEec
Q 028447 103 LLLGRELTVVFAE 115 (209)
Q Consensus 103 ~i~g~~i~V~~a~ 115 (209)
.|+|++|...+..
T Consensus 338 ~fdgRql~A~i~D 350 (382)
T KOG1548|consen 338 WFDGRQLTASIWD 350 (382)
T ss_pred eecceEEEEEEeC
Confidence 9999999988754
No 112
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.97 E-value=1.6e-05 Score=66.98 Aligned_cols=74 Identities=18% Similarity=0.339 Sum_probs=59.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCC---CCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT---GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.|.|.||.+.++.++|+.+|...|+|.++.|+.+..+ ....-.|||.|.+...+..|. .|.++.|-+..|.|-.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 8999999999999999999999999999988654322 234568999999998888776 7777776666555543
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.96 E-value=1.1e-05 Score=74.15 Aligned_cols=85 Identities=26% Similarity=0.330 Sum_probs=74.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC--eEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~ 110 (209)
...+.+.+||++|..++....|..+|..||.|..|.+- +..-||||.|++...|+.|+..|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 56778899999999999999999999999999998775 336899999999999999999999999986 6799
Q ss_pred EEEeccCCCCChH
Q 028447 111 VVFAEENRKKPSE 123 (209)
Q Consensus 111 V~~a~~~~~~~~~ 123 (209)
|.||......+..
T Consensus 525 vdla~~~~~~Pqq 537 (975)
T KOG0112|consen 525 VDLASPPGATPQQ 537 (975)
T ss_pred cccccCCCCChhh
Confidence 9999766555443
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.96 E-value=4.3e-05 Score=56.53 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=52.3
Q ss_pred CCCeEEEeCCC------CCCCH---HHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC
Q 028447 36 LPTSLLVRNLR------HDCRP---EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 106 (209)
Q Consensus 36 ~~~~i~V~nL~------~~~t~---~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 106 (209)
+..||.|.-+. ..+.+ .+|.+.|..||++.-+.++. +.-+|+|.+-+.|.+|+ .|+|.+|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaal-s~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAAL-SLDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHH-HGCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHH-ccCCcEECC
Confidence 34566665444 12222 36778889999999888883 45799999999999999 789999999
Q ss_pred eEEEEEEeccCCC
Q 028447 107 RELTVVFAEENRK 119 (209)
Q Consensus 107 ~~i~V~~a~~~~~ 119 (209)
+.|+|.+..+.+.
T Consensus 97 ~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 97 RTLKIRLKTPDWL 109 (146)
T ss_dssp EEEEEEE------
T ss_pred EEEEEEeCCccHH
Confidence 9999999876654
No 115
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.94 E-value=2.5e-05 Score=66.22 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=63.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe-EEEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR-ELTVVF 113 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~i~V~~ 113 (209)
++..+|++.|||..++|++|+++|..-|........ -++...+|++.+++.|+|..|+..|+++.+++. .|.|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 445699999999999999999999988765433222 123367999999999999999999999998865 899999
Q ss_pred ecc
Q 028447 114 AEE 116 (209)
Q Consensus 114 a~~ 116 (209)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 864
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=6.7e-05 Score=65.33 Aligned_cols=66 Identities=21% Similarity=0.405 Sum_probs=48.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCC---CCCcce---EEEEEecCHHHHHHHHHhhC
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY---TGEPRG---FGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~---~g~~~g---~afV~f~~~~~a~~Ai~~l~ 100 (209)
..-..+||||+||+.++|++|...|..||.|. |.++.... --.++| |+|+.|+++..++..|.++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 45578999999999999999999999999865 34431110 112355 99999999888876665543
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.90 E-value=6.2e-06 Score=65.79 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=60.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCC--------CCcc----eEEEEEecCHHHHHHHHHhhCCcee
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT--------GEPR----GFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~--------g~~~----g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
.-.|||++||+.+...-|.++|..||+|-.|.|.....+ |... .-|+|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999888665433 2222 2378999999999999999999999
Q ss_pred cCeE
Q 028447 105 LGRE 108 (209)
Q Consensus 105 ~g~~ 108 (209)
+|..
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.89 E-value=1.2e-05 Score=68.47 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=57.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecC---CCCC--C--------cceEEEEEecCHHHHHHHHHhhC
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRD---YYTG--E--------PRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~---~~~g--~--------~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
.-+..+|.+.|||.+-.-+.|.++|..+|.|..|.|+.. +.+. . .+-+|||+|++.+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346789999999999888999999999999999999876 3221 1 24579999999999999998886
Q ss_pred Cce
Q 028447 101 GYL 103 (209)
Q Consensus 101 g~~ 103 (209)
...
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 543
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=3.3e-05 Score=67.19 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhc-cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
...-|+..|||||+||--++.++|..+|+ -||.|..+-|-.|++-+.++|-|=|+|.+...-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 33457889999999999999999999998 899999999999988888999999999999999988853
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.80 E-value=5.8e-05 Score=61.48 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=53.8
Q ss_pred HHHHHHhhccCCceEEEEeecCCCCCCc-ceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEP-RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~-~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 117 (209)
++++++.+++||+|..|.|..++..... .--.||+|+..++|.+|+-.|||..|+|+.+..+|.+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 3567888999999998877665432222 334799999999999999999999999999999887643
No 121
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.75 E-value=2.6e-06 Score=71.57 Aligned_cols=74 Identities=8% Similarity=-0.021 Sum_probs=56.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..+|+|++|+..+...+|.++|+.+|+|....+. .+....+|.|+|........|+ .++|.++.-+...+.+.+
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIK 224 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcC
Confidence 4678999999999999999999999999877665 3344678889999888888888 567777664444433333
No 122
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.58 E-value=6.4e-05 Score=64.08 Aligned_cols=76 Identities=25% Similarity=0.378 Sum_probs=60.7
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc-eecCeEEEEEEec
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY-LLLGRELTVVFAE 115 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~i~g~~i~V~~a~ 115 (209)
+++||+||.+.++..+|+.+|...- .+..-.|++ .||+||.+.+...|.+|++.|+|+ ++.|..+.|++.-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 5799999999999999999997541 111222332 689999999999999999999996 6899999999886
Q ss_pred cCCCC
Q 028447 116 ENRKK 120 (209)
Q Consensus 116 ~~~~~ 120 (209)
++...
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 65543
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.53 E-value=0.00064 Score=45.41 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
.+.+||+ +|.++...||.++|..||.|.- .++.| .-|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEE-EEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 4566676 9999999999999999999864 44433 4699999999999999888763
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.46 E-value=0.00069 Score=52.30 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=52.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhcc-CCce---EEEEeecCC--CCCCcceEEEEEecCHHHHHHHHHhhCCceecC-
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQ-FGRL---KDIYLPRDY--YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG- 106 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~-~G~i---~~~~i~~~~--~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g- 106 (209)
....++|.|.+||+.+|++++.+.+.. ++.. ..+...... .......-|||.|.+.+++...+..++|+.|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999987776 6654 233211111 112235679999999999999999999987643
Q ss_pred ----eEEEEEEeccC
Q 028447 107 ----RELTVVFAEEN 117 (209)
Q Consensus 107 ----~~i~V~~a~~~ 117 (209)
....|++|.-+
T Consensus 84 kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQ 98 (176)
T ss_dssp TS-EEEEEEEE-SS-
T ss_pred CCCCcceeEEEcchh
Confidence 45678888653
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.38 E-value=0.00054 Score=57.91 Aligned_cols=71 Identities=23% Similarity=0.243 Sum_probs=52.7
Q ss_pred eEEEeCCCCCCCHHHHHHhhccC----CceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQF----GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
.|-+.+||+++++.++.+||..- |..+.|.++..+ +|...|-|||.|..+++|+.||.+ |...|+-+.|.|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 45567999999999999999632 244566666543 788899999999999999999954 444454444443
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.38 E-value=0.00019 Score=64.72 Aligned_cols=81 Identities=21% Similarity=0.081 Sum_probs=66.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEE-EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.+|||..||..+++.++.++|...-.|++ |.|..-+ ++...+.|||+|..++++..|+..-+-+.++.+.|.|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 456789999999999999999999998877777 5554443 66778999999999888888887767777888899997
Q ss_pred Eec
Q 028447 113 FAE 115 (209)
Q Consensus 113 ~a~ 115 (209)
-..
T Consensus 510 si~ 512 (944)
T KOG4307|consen 510 SIA 512 (944)
T ss_pred chh
Confidence 654
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=97.36 E-value=6.7e-05 Score=62.26 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=60.8
Q ss_pred CCeEEEeCCCCCCCHHH-HH--HhhccCCceEEEEeecCCC----CCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 37 PTSLLVRNLRHDCRPED-LR--GPFGQFGRLKDIYLPRDYY----TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~-L~--~~f~~~G~i~~~~i~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
.+-+||-+|+..+..++ |+ +.|.+||.|..|.+..+.. .+. ..-+||+|+..++|..||...+|..++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-TCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-CCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 35678888987765444 43 6789999999998877651 122 2238999999999999999999999999988
Q ss_pred EEEEeccC
Q 028447 110 TVVFAEEN 117 (209)
Q Consensus 110 ~V~~a~~~ 117 (209)
++.+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 77776543
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.31 E-value=0.0001 Score=67.64 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
...|||.|+|+..|.++|+.+|.++|.+..+.++..+ .|+++|.|||.|.+..++..++..++...+.-..+.|..+++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4679999999999999999999999999999877665 789999999999999999999988888888878888888665
Q ss_pred CC
Q 028447 117 NR 118 (209)
Q Consensus 117 ~~ 118 (209)
..
T Consensus 815 ~~ 816 (881)
T KOG0128|consen 815 ER 816 (881)
T ss_pred cc
Confidence 33
No 129
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.26 E-value=0.0018 Score=40.93 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=44.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccC---CceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQF---GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
.+.+|+|.|+.. ++.++|+.+|..| .....|.++.|. -|-|.|.+.+.|..||.+|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 467899999864 6678899999988 234577787653 4789999999999999765
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.00077 Score=59.36 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=44.4
Q ss_pred CCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec----CeEEEEEEec
Q 028447 61 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL----GRELTVVFAE 115 (209)
Q Consensus 61 ~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~----g~~i~V~~a~ 115 (209)
.|.-..+.++.|..+.+..|||||.|.+.+++..+.+++||+.++ .+.+.|.||.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 455566778888888899999999999999999999999997643 3455666665
No 131
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=97.09 E-value=0.0019 Score=42.48 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=40.3
Q ss_pred eEEEe-CCCCCCCHHHHHHhhccCC-----ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 39 SLLVR-NLRHDCRPEDLRGPFGQFG-----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 39 ~i~V~-nL~~~~t~~~L~~~f~~~G-----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+|||. |--..++..+|..+|...+ .|-.|.|. ..|+||+.. .+.|+.++..|++..+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE--TT-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEE
Confidence 45652 2234578889988887765 45567776 568999985 457888999999999999999998
Q ss_pred Ee
Q 028447 113 FA 114 (209)
Q Consensus 113 ~a 114 (209)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.02 E-value=4e-05 Score=70.21 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=58.5
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 105 (209)
.++||.||+..+.+.+|...|..+|.|..+.+.....++..+|+|||+|...+++.+||.......++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 47899999999999999999999998888877766678889999999999999999999665554444
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.93 E-value=0.00016 Score=66.82 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=64.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
..+||+|||...+++.+|...|..+|.|..|.|.... -+....|+||.|.+...+..|+..|.+..|....+.+.+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 5689999999999999999999999999999987653 3444679999999999999999899888776555554444
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.0012 Score=58.23 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=55.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhcc--CCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--ceecCeEEEE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQ--FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELTV 111 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i~V 111 (209)
.-|.|+|.-||..+..++|+.+|.. +-+++.|.+..+. -=||+|++..||+.|++.|.. ++|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3567888999999999999999974 6688888876542 259999999999999988765 4567766654
Q ss_pred EE
Q 028447 112 VF 113 (209)
Q Consensus 112 ~~ 113 (209)
.+
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 135
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.81 E-value=0.0013 Score=52.75 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=59.7
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc----eecCeEEEEEE
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----LLLGRELTVVF 113 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~----~i~g~~i~V~~ 113 (209)
..|||.||...+..+.|...|..||+|....++.|. .++..+-++|+|.+.-.|.+|+..+... .+.+.++-|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 689999999999999999999999999876666553 6777889999999999999998877432 23344444443
No 136
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.79 E-value=0.015 Score=41.31 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=49.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 106 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 106 (209)
...+.+...|+.++.++|..+.+.+- .|..+.|+.+.. .++-.+.|.|.+.++|....+.+||+.|+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34455555666667777776666654 566788887632 245678999999999999999999988754
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.70 E-value=0.0015 Score=56.54 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=58.7
Q ss_pred CCeEEEeCCCCCC-CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 37 PTSLLVRNLRHDC-RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 37 ~~~i~V~nL~~~~-t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
.+.|-|.-++..+ +-++|...|.+||+|..|.+-.. ...|.|+|.+..+|-.|. ..++..|+++.|+|-|-+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEec
Confidence 3445555555554 46889999999999999987643 456899999999997777 679999999999999987
Q ss_pred c
Q 028447 116 E 116 (209)
Q Consensus 116 ~ 116 (209)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 6
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.62 E-value=0.0067 Score=47.08 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=46.6
Q ss_pred CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC--CceecCeEEEEEEeccC
Q 028447 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD--GYLLLGRELTVVFAEEN 117 (209)
Q Consensus 50 t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~--g~~i~g~~i~V~~a~~~ 117 (209)
..+.|+++|..|+.+..+.+... .+-..|.|.+.++|+.|...|+ +..|.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999888877743 5668999999999999999999 99999999999998543
No 139
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.56 E-value=0.011 Score=43.58 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=55.2
Q ss_pred CCCCCeEEEeCCCCCCC-HH---HHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 34 RDLPTSLLVRNLRHDCR-PE---DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t-~~---~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
.++..+|.|.=|..++. .+ .|...+..||+|..|.+. ++.-|.|.|.+...|=.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 45667888887766654 23 355667899999998775 356799999999999999988876 5567777
Q ss_pred EEEEe
Q 028447 110 TVVFA 114 (209)
Q Consensus 110 ~V~~a 114 (209)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 77774
No 140
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.014 Score=48.10 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE-EEEEec
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL-TVVFAE 115 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i-~V~~a~ 115 (209)
.+=|-|.++++.-. ..|..+|.+||+|.+.... ..-.+-+|.|.+..+|++|| ..||..|+|..| -|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 34455668877643 4567789999999876554 22568899999999999999 559999998643 355443
No 141
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.11 E-value=0.0028 Score=56.98 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=62.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.++..+|||+||...+.++.++.++..+|.|..+..+ -|+|.+|..+.-+..|+..|+-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567799999999999999999999999998776654 2999999999999999999999999998877765
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.72 E-value=0.0062 Score=56.32 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=57.7
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce--ecCeEEEEEEeccCC
Q 028447 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL--LLGRELTVVFAEENR 118 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~--i~g~~i~V~~a~~~~ 118 (209)
|.+-.++-..|..+|..||.|...+...+ ...|.|+|...+.|..|+++|+|++ +.|-+.+|.+|+...
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 33445566778999999999999988766 5789999999999999999999986 468889999987654
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.46 E-value=0.0073 Score=50.15 Aligned_cols=80 Identities=11% Similarity=-0.019 Sum_probs=63.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..+++||+++.+.+.+.++..+|..+|.+....+.........+++++|.|...+.+..|+.......+.+..+...+.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999899999999988777666655667789999999999999999996544456666655554443
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.19 E-value=0.14 Score=32.80 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=43.4
Q ss_pred CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 48 DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 48 ~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.++.++|+..|..|+-. .|..|+ .| -||.|.+..+|+.+....+|..+.+..|.++
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 46789999999999642 233332 33 4899999999999999999999888877653
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.01 E-value=0.08 Score=45.99 Aligned_cols=67 Identities=24% Similarity=0.298 Sum_probs=56.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCCCCcce-EEEEEecCHHHHHHHHHhhCCceecC
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRG-FGFVQYIDPADAADAKYHMDGYLLLG 106 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g-~afV~f~~~~~a~~Ai~~l~g~~i~g 106 (209)
.+.|+|-.+|..++-.||..|+..+- .|..|.|+.| |.+.. .++|.|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999988664 6788999874 34444 47899999999999999999988764
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.28 Score=43.97 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=60.0
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccC----CceEEEEeecCC----------CCCC---------------------
Q 028447 34 RDLPTSLLVRNLRHD-CRPEDLRGPFGQF----GRLKDIYLPRDY----------YTGE--------------------- 77 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~-~t~~~L~~~f~~~----G~i~~~~i~~~~----------~~g~--------------------- 77 (209)
..+.+.|-|.||.|. +...+|..+|..| |.|..|.|...- .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 356788999999997 6788998888765 578777664311 1111
Q ss_pred ----------------cceEEEEEecCHHHHHHHHHhhCCceecC--eEEEEEEec
Q 028447 78 ----------------PRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVVFAE 115 (209)
Q Consensus 78 ----------------~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~~a~ 115 (209)
..-||.|+|.+++.|.+++..++|.+|.. ..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 12478999999999999999999999874 455555543
No 147
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=93.94 E-value=0.063 Score=41.14 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=56.8
Q ss_pred CCCCeEEEeCCCCCCCH-----HHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe-E
Q 028447 35 DLPTSLLVRNLRHDCRP-----EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR-E 108 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~-----~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~ 108 (209)
+.+++|++++|+.++.. ...+.+|-+|-+.+.+.+.. +.++.-|.|.+.+.|..|...++...|.|. .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 77889999999887532 23345566666555555552 356677899999999999999999999988 7
Q ss_pred EEEEEeccC
Q 028447 109 LTVVFAEEN 117 (209)
Q Consensus 109 i~V~~a~~~ 117 (209)
|+.-++.+.
T Consensus 82 ~k~yfaQ~~ 90 (193)
T KOG4019|consen 82 LKLYFAQPG 90 (193)
T ss_pred EEEEEccCC
Confidence 777777543
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=93.74 E-value=0.22 Score=40.97 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=44.9
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCce-EEEEeecCCCCCCcceEEEEEecCH-------HHHHHHHHhhC
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL-KDIYLPRDYYTGEPRGFGFVQYIDP-------ADAADAKYHMD 100 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~-------~~a~~Ai~~l~ 100 (209)
+.++...+-|+|+||+.++...||+..+.+.+.+ ..|.+. .+.+-||+.|.+. +++.+++..+|
T Consensus 324 g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 324 GVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cccCccccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 3345556779999999999999999999887643 334433 3378899999764 44555554443
No 149
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=92.93 E-value=0.14 Score=33.02 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=46.0
Q ss_pred HHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 52 EDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 52 ~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
++|++.|+.+| ++..+..+....+..+...-||+.....+... .|+-+.|+|+.|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46778888888 77888888888778888889999876544333 456677889999988654
No 150
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=92.78 E-value=0.24 Score=31.94 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=45.6
Q ss_pred HHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 52 EDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 52 ~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
++|.+.|...| +|..+.-+....++.+....||+++...+. .+.|+=..|++..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCCC
Confidence 45777777777 777887777777788888999999765552 334566778899999987653
No 151
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.53 E-value=3.4 Score=38.31 Aligned_cols=71 Identities=8% Similarity=0.138 Sum_probs=52.1
Q ss_pred CCeEEEe-CCCCCCCHHHHHHhhccCCceE-----EEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 37 PTSLLVR-NLRHDCRPEDLRGPFGQFGRLK-----DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 37 ~~~i~V~-nL~~~~t~~~L~~~f~~~G~i~-----~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
...+||. +-...++..+|..++..-+.|. .|.|. ..|.||+.. ...|...+..|++..+.|+.|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceE
Confidence 3445553 2244588888888887666443 45555 568999995 5668889999999999999999
Q ss_pred EEEecc
Q 028447 111 VVFAEE 116 (209)
Q Consensus 111 V~~a~~ 116 (209)
|+.+..
T Consensus 557 ~~~~~~ 562 (629)
T PRK11634 557 MQLLGD 562 (629)
T ss_pred EEECCC
Confidence 998853
No 152
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=0.45 Score=40.95 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=48.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCc-eEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR-LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
+.+.++.|-|-++|.....+||...|+.|+. -..|.||-+ .+||..|.....|..||..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 4567889999999999999999999999974 345666644 4799999999999999843
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=90.93 E-value=0.0073 Score=51.87 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
..+|.|.|+|+...++.|..++..||.++.|..+.- .......-|+|...+.+..||..|+|..|....++|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 456889999999999999999999999988865421 11123345788899999999999999999999999988643
No 154
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.98 E-value=0.15 Score=41.87 Aligned_cols=35 Identities=20% Similarity=0.526 Sum_probs=27.0
Q ss_pred CCeEEEeCCCCC------------CCHHHHHHhhccCCceEEEEeec
Q 028447 37 PTSLLVRNLRHD------------CRPEDLRGPFGQFGRLKDIYLPR 71 (209)
Q Consensus 37 ~~~i~V~nL~~~------------~t~~~L~~~f~~~G~i~~~~i~~ 71 (209)
+.|||+.+||-. .+++-|...|+.||.|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 567888887732 34677999999999999887753
No 155
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=86.96 E-value=1 Score=38.53 Aligned_cols=71 Identities=15% Similarity=0.372 Sum_probs=50.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCC--CCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYT--GEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~--g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
....+.|.|.+||+.+++.+|.+.+..|- .+....+...... ..-.+.|||.|...++.......++|++|
T Consensus 4 ~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 4 KEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34567899999999999999988887764 2333333321111 12256789999999999999889998765
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=84.83 E-value=1.2 Score=35.08 Aligned_cols=64 Identities=23% Similarity=0.237 Sum_probs=44.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 96 (209)
.......+++.+++..++..++..+|..+|.+..+.+...........+.++.+.....+..++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 3456788999999999999999999999999977776655433334444444444444444443
No 157
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.65 E-value=0.14 Score=44.47 Aligned_cols=79 Identities=3% Similarity=-0.195 Sum_probs=60.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.+..|+..|+..+++.+|.-+|+-||-|..+.+...-..+...-.+||+.. ..+|..+|..+.-..+.|..+.|.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCch
Confidence 356788899999999999999999999998877665556677778888875 3556667666666667777788777653
No 158
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=83.83 E-value=0.13 Score=45.74 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=53.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 107 (209)
.+.|||.|++++++.++|+.++..+--+..+.+-.+.......-+++|+|.--.+...|+.+||+..+.-.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 46789999999999999999999887666665554433334466788999877777777778888665443
No 159
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=82.42 E-value=2.1 Score=30.68 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=25.8
Q ss_pred CeEEEeCCCCCC---------CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCH
Q 028447 38 TSLLVRNLRHDC---------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89 (209)
Q Consensus 38 ~~i~V~nL~~~~---------t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 89 (209)
-+++|.|++... +.+.|.+.|..|..+. +..+.+. ..+.|+++|+|..-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKD 66 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SS
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCC
Confidence 356777886543 4578999999998775 4344443 25589999999853
No 160
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=78.81 E-value=7.3 Score=33.93 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=27.3
Q ss_pred eEEEEEecCHHHHHHHHHhhCCceecC--eEEEEEEe
Q 028447 80 GFGFVQYIDPADAADAKYHMDGYLLLG--RELTVVFA 114 (209)
Q Consensus 80 g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~~a 114 (209)
-||.|+|.+.+.+...+..++|.++.. ..+-+.|.
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 378999999999999999999988764 44445444
No 161
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=78.73 E-value=0.46 Score=37.70 Aligned_cols=68 Identities=29% Similarity=0.376 Sum_probs=51.1
Q ss_pred CCCeEEEeC----CCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 36 LPTSLLVRN----LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 36 ~~~~i~V~n----L~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
...+++.|+ |...++++.+...|..-|.|..+.+..+. +|.+..++|+++......-.|+...++..+
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 345666666 66677888888888888988888887765 477788999999877777777766666543
No 162
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=77.77 E-value=11 Score=24.82 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=40.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
.-|+..++..++..+|+..++. |+ +|..|..+.-+ ...--|||++..-+.|.+.-..|
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 4667778999999999988876 44 55555444322 22346999998888887765443
No 163
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=77.75 E-value=10 Score=25.44 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=40.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
..|+.-+...++..+|++.++. || +|..|..+.-+ ...--|||++...++|.+....|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 4566677889999999988886 45 55666544332 22346999999888887775443
No 164
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=77.10 E-value=35 Score=27.13 Aligned_cols=64 Identities=17% Similarity=0.018 Sum_probs=36.9
Q ss_pred EeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHH--hhCCceec
Q 028447 42 VRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY--HMDGYLLL 105 (209)
Q Consensus 42 V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~--~l~g~~i~ 105 (209)
|.+-..--+.--|++-+...|.|---.-....+.....=.-|-+=.+.|+|++||+ .|+|.+|-
T Consensus 21 LTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 21 LTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred eeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 33333334455666777777766422211122222223345666778999999985 78998884
No 165
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.83 E-value=10 Score=31.53 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=55.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCC-------CCCCcceEEEEEecCHHHHHHHH----HhhCC--ce
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDY-------YTGEPRGFGFVQYIDPADAADAK----YHMDG--YL 103 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~-------~~g~~~g~afV~f~~~~~a~~Ai----~~l~g--~~ 103 (209)
...|.+.||...++-..+...|.+||.|+.|.++.+. ...+...-..+-|-+.+.|.... +.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4467888999999888888889999999999998764 12233456788898888876543 23322 23
Q ss_pred ecCeEEEEEEec
Q 028447 104 LLGRELTVVFAE 115 (209)
Q Consensus 104 i~g~~i~V~~a~ 115 (209)
+.-..|.|.|..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 555566666654
No 166
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=72.39 E-value=5 Score=32.26 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=28.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDI 67 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~ 67 (209)
....+||+-|||..+|++.|..+..++|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 556789999999999999999999988855443
No 167
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=70.96 E-value=17 Score=28.01 Aligned_cols=10 Identities=40% Similarity=0.212 Sum_probs=4.4
Q ss_pred CCCCCCCCCC
Q 028447 166 RGRDSRSISP 175 (209)
Q Consensus 166 ~rs~srs~s~ 175 (209)
+++++++.++
T Consensus 139 srs~SRs~s~ 148 (195)
T KOG0107|consen 139 SRSRSRSRSR 148 (195)
T ss_pred cccccccCCC
Confidence 4444444433
No 168
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=70.22 E-value=35 Score=24.78 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=47.9
Q ss_pred CCeEEEeCCCCC---CCHHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 37 PTSLLVRNLRHD---CRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 37 ~~~i~V~nL~~~---~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...|.|.+.... .+...|.+.++.-| .++.+... .+-..|.|.+.++-.+|.+.|....-++..|.+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~--------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE--------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 345666655333 45667788887766 44455443 3357899999999999988887766566667666
Q ss_pred Eec
Q 028447 113 FAE 115 (209)
Q Consensus 113 ~a~ 115 (209)
.+.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 654
No 169
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=68.58 E-value=2.3 Score=38.03 Aligned_cols=8 Identities=63% Similarity=0.692 Sum_probs=3.1
Q ss_pred CCCCCccc
Q 028447 199 RSRSRSLD 206 (209)
Q Consensus 199 ~~rsrs~s 206 (209)
+++++|++
T Consensus 459 RrrsRsRs 466 (653)
T KOG2548|consen 459 RRRSRSRS 466 (653)
T ss_pred hhhhhhcc
Confidence 33444433
No 170
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=67.15 E-value=26 Score=21.30 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=38.3
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCH----HHHHHHHHh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP----ADAADAKYH 98 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~----~~a~~Ai~~ 98 (209)
+|.|.||.=......|+..+...-.|..+.+-.. .+-+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778788777677889999988878887777543 45677888643 555666654
No 171
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=64.66 E-value=3.8 Score=37.59 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=54.2
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
+||+.|-...-+..-|..++..++++....++.....+...+-+|++|.....++.|. .|.+..+....++
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~k 583 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLK 583 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-cccccccccccee
Confidence 7888887777777888889999998888877776666666678999999888876664 6777666555444
No 172
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=64.63 E-value=23 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=24.7
Q ss_pred ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce
Q 028447 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (209)
Q Consensus 63 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 103 (209)
.|..+....+ .+||-|||=.+..++..|+..+.+..
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4555555433 48999999999999999998877654
No 173
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=64.58 E-value=31 Score=23.56 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHhhccCCce-EEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 45 LRHDCRPEDLRGPFGQFGRL-KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 45 L~~~~t~~~L~~~f~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
+.+.+++..|...|.--|.- ....+-+|.. ..+|-|+|.+.+.+..|.+.|-.
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W----~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYW----RPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccc----eEeEEEECCChHHHHHHHHHHHH
Confidence 44566777777666555532 1122222221 57899999999999999877654
No 174
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=64.53 E-value=6.8 Score=32.84 Aligned_cols=33 Identities=21% Similarity=0.060 Sum_probs=24.8
Q ss_pred EEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 82 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 82 afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
|||+|++..+|+.|++.+.... +..+.|+.|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999998665543 34457776654
No 175
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=64.53 E-value=33 Score=24.57 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=35.8
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec--C------HHHHHHHHHhhCCceecCeEE
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI--D------PADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~--~------~~~a~~Ai~~l~g~~i~g~~i 109 (209)
..||||+++...+.+.|++. .+..|..+.-... .....++-++.|. + .+....+++.++...-.|.+|
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 81 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKL--GITHVINVTNEVP--NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKV 81 (138)
T ss_pred CCeEECChhHcCCHHHHHHc--CCCEEEEccCCCC--CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeE
Confidence 35999999987765555442 3444544422211 1112333444332 2 123344555555444456666
Q ss_pred EEEEe
Q 028447 110 TVVFA 114 (209)
Q Consensus 110 ~V~~a 114 (209)
-|.-.
T Consensus 82 lVHC~ 86 (138)
T smart00195 82 LVHCQ 86 (138)
T ss_pred EEECC
Confidence 66543
No 176
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=64.50 E-value=8.1 Score=31.18 Aligned_cols=73 Identities=14% Similarity=0.041 Sum_probs=36.4
Q ss_pred CCeEEEeCCCCCCC----HHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEe-cCHHHHHHHHHhhCCceecCeEEE
Q 028447 37 PTSLLVRNLRHDCR----PEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQY-IDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 37 ~~~i~V~nL~~~~t----~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f-~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
...||||+|....- .+.|...+.+.+ .|+.+.+-. ...||+.... .+.++...+|+.+.+..+....+-
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~S-----sy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRS-----SYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccc-----cccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 56799999876532 233333333222 232232221 1234443222 366777778877666655444444
Q ss_pred EEEe
Q 028447 111 VVFA 114 (209)
Q Consensus 111 V~~a 114 (209)
|-.+
T Consensus 112 ~GhS 115 (299)
T KOG4840|consen 112 VGHS 115 (299)
T ss_pred EecC
Confidence 4443
No 177
>PRK11901 hypothetical protein; Reviewed
Probab=63.25 E-value=18 Score=30.64 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEE--EEEecCHHHHHHHHHhhCCce
Q 028447 45 LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG--FVQYIDPADAADAKYHMDGYL 103 (209)
Q Consensus 45 L~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~a--fV~f~~~~~a~~Ai~~l~g~~ 103 (209)
|--...++.|..|..+++ +..+++.....+|+ ..|. |-.|.+.++|..||..|-...
T Consensus 250 L~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 250 LSSASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred eecCCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 333456788888887775 44455544333343 2343 447899999999999887543
No 178
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=63.18 E-value=27 Score=26.05 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=26.5
Q ss_pred eEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 64 i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
|..+.++.. ..||.||+....+++..+|..+.+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 556666543 4899999999888888898888764
No 179
>PF14893 PNMA: PNMA
Probab=61.90 E-value=7.3 Score=33.17 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=44.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhc----cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
-|+-..|.|.+||.++++++|++.+. ..|...-+.-+.-.+ .....|+|+|...-+-...=..+.| .|...
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~--~~~~aalve~~e~~n~~~iP~~i~g---~gg~W 89 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE--ENAKAALVEFAEDVNYSLIPREIPG---KGGPW 89 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh--cccceeeeecccccchhhCchhcCC---CCCce
Confidence 45667899999999999999888765 344332221111111 2245689999754332211112222 35677
Q ss_pred EEEEeccC
Q 028447 110 TVVFAEEN 117 (209)
Q Consensus 110 ~V~~a~~~ 117 (209)
+|-+..+.
T Consensus 90 ~Vv~~p~~ 97 (331)
T PF14893_consen 90 RVVFKPPA 97 (331)
T ss_pred EEEecCCC
Confidence 77665443
No 180
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=60.00 E-value=18 Score=22.82 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=15.7
Q ss_pred HHHHHhhccCCceEEEEee
Q 028447 52 EDLRGPFGQFGRLKDIYLP 70 (209)
Q Consensus 52 ~~L~~~f~~~G~i~~~~i~ 70 (209)
++|.++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999999876553
No 181
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=58.26 E-value=22 Score=24.04 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=31.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 87 (209)
+...-||||+++..+-+.-.+.+.+..++-.-+.+..+. ...||+|-++.
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 455679999999988766555555544433333333222 25899998874
No 182
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=57.83 E-value=50 Score=22.32 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=31.6
Q ss_pred HHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 51 PEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 51 ~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
.+.+.++++.+| ++..+.+.. |..--++.+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 355677777765 788887774 3445667889999888877664443
No 183
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=57.00 E-value=3 Score=35.41 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
...|.+++++.|.|..-.|..- .+-|.+||.+-..++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3567888888887765544422 23678888899999999999998874
No 184
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=56.57 E-value=6 Score=34.26 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=44.4
Q ss_pred eEEEeCCCCCCCH--------HHHHHhhcc--CCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH
Q 028447 39 SLLVRNLRHDCRP--------EDLRGPFGQ--FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 39 ~i~V~nL~~~~t~--------~~L~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 96 (209)
.+|+.++..+... ++|..+|.. .+.+..+.+-.+..+....|-.|++|...+.|+.++
T Consensus 176 ~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 176 DVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4666666655443 489999988 567777777766656677888999999999999887
No 185
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=55.99 E-value=16 Score=28.30 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=30.2
Q ss_pred HHHHHHhhccCCceEEEEeecCCCC-CCcceEEEEEecCHHHHHHHHHh
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~-g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
.++|.++.. |++..|.+-..... ....|-.||+|...+.|.++++.
T Consensus 123 l~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 123 LDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 344444444 78877776543211 24578899999999999887754
No 186
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=55.48 E-value=35 Score=31.56 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=5.3
Q ss_pred CCCCeEEEeC
Q 028447 35 DLPTSLLVRN 44 (209)
Q Consensus 35 ~~~~~i~V~n 44 (209)
+..+.|.|..
T Consensus 37 ~getSiViSD 46 (1027)
T KOG3580|consen 37 NGETSIVISD 46 (1027)
T ss_pred CCceeEEEee
Confidence 3445666654
No 187
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=52.80 E-value=17 Score=23.39 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=20.4
Q ss_pred eEEEEEecCHHHHHHHHHhhCCcee
Q 028447 80 GFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 80 g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
.+.+|.|.+..+|.+|-+.|....|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3689999999999999888776544
No 188
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.19 E-value=21 Score=32.10 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=43.1
Q ss_pred EEeCCCCCCC---HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 41 LVRNLRHDCR---PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 41 ~V~nL~~~~t---~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
+||||+.-.. ...|..+-++||.|-.+.|-. .-.|...+.+.|++|+. -|+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 5788876543 345666667899998777642 24677888999999994 47888888775
No 189
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.97 E-value=11 Score=25.65 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhc
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFG 59 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~ 59 (209)
...+|.|.|||..+.+++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 367899999999999999987643
No 190
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=51.85 E-value=43 Score=21.38 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=38.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHHHHHHHHh
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 98 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~ 98 (209)
..+|+|-++.=.--...++..+.....|..+.+-.. .+-++|+|.. .++...||+.
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcCCcCCHHHHHHHHHH
Confidence 346777777666667788888888877888777654 4568999987 3444445433
No 191
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=49.44 E-value=62 Score=20.08 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=36.8
Q ss_pred CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 50 t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
..+++.+.+..+-.|..|..+ +|...=.+.|.+.+.++.+..+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~v----tG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSV----TGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEE----SSSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEE----eCCCCEEEEEEECCHHHHHHHHHH
Confidence 357788888899999999888 666677888999999999988543
No 192
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=47.91 E-value=58 Score=19.30 Aligned_cols=27 Identities=7% Similarity=0.165 Sum_probs=22.0
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCce
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRL 64 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i 64 (209)
..++|.+.....+.++|.+++..+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888877678889999999998863
No 193
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=47.72 E-value=66 Score=29.03 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=34.0
Q ss_pred HHHHHHhhc----cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 51 PEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 51 ~~~L~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
.-+|..+|. .+|-|..+.|...+.. ......++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHH
Confidence 346666664 5778888777655432 224567889999999998887754
No 194
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=47.61 E-value=30 Score=28.45 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=24.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEee
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLP 70 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~ 70 (209)
....|+|||++++..-|..+++..-.+..+.+|
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 456799999999999999888765554333333
No 195
>PRK10905 cell division protein DamX; Validated
Probab=46.82 E-value=34 Score=28.93 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=36.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCc-ceEEEEEecCHHHHHHHHHhhCCc
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP-RGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~-~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
.+|.|+.+. +++.|.+|..+.|. ....+.....+|+. .-.-+-.|.+.++|+.||..|-..
T Consensus 248 YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 455555554 56777777777753 33333333233431 122344789999999999988753
No 196
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=46.75 E-value=8.1 Score=32.71 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=4.1
Q ss_pred HHHHHhhccC
Q 028447 52 EDLRGPFGQF 61 (209)
Q Consensus 52 ~~L~~~f~~~ 61 (209)
.+|..+|+.|
T Consensus 172 ~dLw~WyEpy 181 (453)
T KOG2888|consen 172 ADLWDWYEPY 181 (453)
T ss_pred hHHHHHhhhh
Confidence 3444444433
No 197
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=45.80 E-value=70 Score=20.47 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=27.0
Q ss_pred HHHHHhhccCCceEEEEeecCCCCCC-cceEEEEEecCHHHHHHHHHhhC
Q 028447 52 EDLRGPFGQFGRLKDIYLPRDYYTGE-PRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 52 ~~L~~~f~~~G~i~~~~i~~~~~~g~-~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
.+|.+++..+| +....|. |. .-++.|+.+.+.+.++.+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-----GsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-----GSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-----TTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-----CCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45667777888 3333443 22 13567777778888888877653
No 198
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=45.10 E-value=28 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=16.8
Q ss_pred cceEEEEEecCHHHHHHHHHhh
Q 028447 78 PRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 78 ~~g~afV~f~~~~~a~~Ai~~l 99 (209)
.--|.+++|.+.+...+|...+
T Consensus 65 ~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 65 EVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEEcCchhHHHHHHHHh
Confidence 3568899999988887776544
No 199
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=44.06 E-value=35 Score=23.60 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=29.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCH
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 89 (209)
+...-||||+++..+-+.--+.+-+.++.-.-+.+..+ ....||+|-++.+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 34567999999887765433333333333222222222 23359999888653
No 200
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=43.33 E-value=47 Score=22.93 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=42.3
Q ss_pred CCCeEEEeCCCCCCC--HHHHHHhhccCCceEEEEeecCCCCCCcceEE-EEEecC--HHHHHHHHHhhCCcee-cCeEE
Q 028447 36 LPTSLLVRNLRHDCR--PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG-FVQYID--PADAADAKYHMDGYLL-LGREL 109 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t--~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~a-fV~f~~--~~~a~~Ai~~l~g~~i-~g~~i 109 (209)
.+..|.|+-.....+ .+.|.++|++.+.|....+..-...+....|. -|+|.. .+.+..+|..+....+ ++..|
T Consensus 4 ~g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~v 83 (108)
T PF14581_consen 4 KGEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPV 83 (108)
T ss_pred CCCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCceE
Confidence 355677764433322 46788999999988876554433323333344 456665 2333333333333333 33566
Q ss_pred EEEEec
Q 028447 110 TVVFAE 115 (209)
Q Consensus 110 ~V~~a~ 115 (209)
.+....
T Consensus 84 d~~~~~ 89 (108)
T PF14581_consen 84 DFVLLD 89 (108)
T ss_pred EEEEcc
Confidence 655544
No 201
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=43.13 E-value=88 Score=20.05 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=34.6
Q ss_pred EEEeCCCCCCCHHHHHHhhc-cCCce-EEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 40 LLVRNLRHDCRPEDLRGPFG-QFGRL-KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 40 i~V~nL~~~~t~~~L~~~f~-~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
+++-.|+..++-++|...+. .|+.. ..+.|......| -+|.+.+.++.+.|+..+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 44556778888888776654 34421 223332222122 3899999999999997654
No 202
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=42.28 E-value=1.1e+02 Score=20.86 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHh----------hccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 44 NLRHDCRPEDLRGP----------FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 44 nL~~~~t~~~L~~~----------f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
+||..++.+++.++ +..-|.+..+.-+ .|....++.++-.+.++....|..|.-+.+
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~----~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~ 76 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRV----VGRYANVSIFDVEDNDELHELLSSLPLFPY 76 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEe----cCCcceEEEEECCCHHHHHHHHHhCCCccc
Confidence 78888887665433 4456888887765 456678899999999999888776665543
No 203
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=41.54 E-value=24 Score=32.68 Aligned_cols=7 Identities=57% Similarity=0.880 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 028447 154 SRSPDYY 160 (209)
Q Consensus 154 srs~~~~ 160 (209)
++++-+|
T Consensus 736 Srs~~~~ 742 (878)
T KOG1847|consen 736 SRSHELY 742 (878)
T ss_pred ccccccc
Confidence 4444433
No 204
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=41.42 E-value=19 Score=32.49 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=33.4
Q ss_pred ceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 79 ~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
..|++++|++...+.+|+..++|..+.+..+.|..+..
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 57899999999999999999999998888888777654
No 205
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=40.77 E-value=14 Score=26.97 Aligned_cols=66 Identities=15% Similarity=0.048 Sum_probs=39.6
Q ss_pred eEEEeCCC--CCCCHHHHHHhhcc----CCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 39 SLLVRNLR--HDCRPEDLRGPFGQ----FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 39 ~i~V~nL~--~~~t~~~L~~~f~~----~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...|+.+. ..++...|...+.. .+.+.-..+- .++..+.|.+.++++.++. .....+++..|.++
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~--------~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~ 87 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG--------DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQ 87 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC--------CCeEEEEEEeccceeEEEe-cccccccccchhhh
Confidence 34455552 23556666655543 3444333332 5788999999999988873 34456677666554
Q ss_pred E
Q 028447 113 F 113 (209)
Q Consensus 113 ~ 113 (209)
.
T Consensus 88 ~ 88 (153)
T PF14111_consen 88 R 88 (153)
T ss_pred h
Confidence 4
No 206
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=40.68 E-value=56 Score=30.03 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=31.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 87 (209)
...||+.+|+..+.++.=.+++...--++.+.|+. .||| |||.
T Consensus 301 ~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r-------pgYA-IEYD 343 (621)
T COG0445 301 TDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR-------PGYA-IEYD 343 (621)
T ss_pred CceEecCcccccCCHHHHHHHHHhCcccccceeec-------ccee-eeec
Confidence 56899999999888776667777666677777764 4666 5664
No 207
>COG5584 Predicted small secreted protein [Function unknown]
Probab=40.38 E-value=48 Score=22.87 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEeecCCC
Q 028447 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY 74 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~ 74 (209)
|+..+..-.-+++.|+++|.|..-+|...++
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 4566666677899999999999888776654
No 208
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=40.24 E-value=28 Score=32.24 Aligned_cols=8 Identities=63% Similarity=0.854 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 028447 150 ARGYSRSP 157 (209)
Q Consensus 150 ~r~rsrs~ 157 (209)
+++|++|+
T Consensus 749 ~rsRsrSp 756 (878)
T KOG1847|consen 749 GRSRSRSP 756 (878)
T ss_pred cccccCCc
Confidence 33344443
No 209
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=39.71 E-value=9.2 Score=24.44 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=26.0
Q ss_pred HHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 52 ~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
++|++.|..+.....+ + +-.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~--v--------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKI--V--------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhh--h--------hhhhccCCCCHHHHHHHHHHhh
Confidence 5777777665443322 1 2248999999999888876653
No 210
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=39.25 E-value=85 Score=23.39 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=34.5
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 96 (209)
..||.-+...++..+|++.++. |+ .|..|..+.-+ ...--|||.+....+|.+..
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p---~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP---DGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC---CCceEEEEEECCCCcHHHHH
Confidence 4556667788888888888876 44 44555443222 12345899997766655444
No 211
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=39.11 E-value=1.1e+02 Score=20.08 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHhh-ccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 44 NLRHDCRPEDLRGPF-GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 44 nL~~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.++.-+.-+||..-. ..||...++.+..+ .-.|-..+.+|..+||+.|+. .-..+.|+|-
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRil 75 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDR-SPHMKSLRIL 75 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHcc-CccccceeEe
Confidence 456666766665444 57998888877643 267888899999999988876 3233344443
No 212
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=38.74 E-value=1.2e+02 Score=20.32 Aligned_cols=56 Identities=7% Similarity=-0.010 Sum_probs=32.8
Q ss_pred eEEEeCCCCCCCHHHHH----HhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 39 SLLVRNLRHDCRPEDLR----GPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~----~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
-|+|..++..++-++|. ++|.-.- ..-.++++ ...|. .|+|.+.++.+.|+..+.-
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~--DEEGD-----p~tiSS~~EL~EA~rl~~~ 70 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI--DEEGD-----PCTISSQMELEEAFRLYEL 70 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE--CCCCC-----ceeecCHHHHHHHHHHHHh
Confidence 47778888888766554 4443221 12223333 22333 4778899999999876543
No 213
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=38.30 E-value=23 Score=28.82 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=22.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhc--cCCceE
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFG--QFGRLK 65 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~--~~G~i~ 65 (209)
...++|+|||+.++..-|..++. .||.+.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~ 127 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVR 127 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccc
Confidence 45688999999999998888886 444433
No 214
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=38.24 E-value=51 Score=28.33 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=32.7
Q ss_pred CCCeEEEeCCC----CCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH
Q 028447 36 LPTSLLVRNLR----HDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 36 ~~~~i~V~nL~----~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 96 (209)
....|||+|=+ ..++.++|..+++.... .+.++.| -||++|.. +++...+
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD--------EAY~eF~~-~~~~~l~ 198 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID--------EAYIEFSP-ESSLELL 198 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe--------CchhhcCC-chhhhhc
Confidence 45678888642 23678999999987755 2333433 59999988 4444444
No 215
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=37.59 E-value=1e+02 Score=21.07 Aligned_cols=48 Identities=15% Similarity=0.062 Sum_probs=27.3
Q ss_pred eEEEeCCCCCCCHHHH---HHhhccCCceEEEEe--ecCCCCCCcceEEEEEe
Q 028447 39 SLLVRNLRHDCRPEDL---RGPFGQFGRLKDIYL--PRDYYTGEPRGFGFVQY 86 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L---~~~f~~~G~i~~~~i--~~~~~~g~~~g~afV~f 86 (209)
..|+.|||..+.+..+ +..|..+..-..|.+ ......+...|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 5688999998876554 556666664444443 22334455666665544
No 216
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=37.11 E-value=70 Score=22.03 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=14.2
Q ss_pred ceEEEEEecCHHHHHHHH
Q 028447 79 RGFGFVQYIDPADAADAK 96 (209)
Q Consensus 79 ~g~afV~f~~~~~a~~Ai 96 (209)
.....|+|.+.+.|..+.
T Consensus 53 tr~vviEFps~~~ar~~y 70 (96)
T COG5470 53 TRNVVIEFPSLEAARDCY 70 (96)
T ss_pred ccEEEEEcCCHHHHHHHh
Confidence 567899999998876653
No 217
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=36.77 E-value=1.1e+02 Score=24.76 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=43.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCC---CCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDY---YTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
...+-+|-|.-||-.-.++-++.+|+..| +|.-..+..|. ..|. ..|..|+.....-..+|+..|
T Consensus 115 ~~~pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~-S~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 115 TPIPLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGD-SRYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred CCCceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccC-CcceEEEEeeeEEHHHHHhhh
Confidence 45567888889998888999999999999 44333444443 2344 346777777655555565443
No 218
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=36.70 E-value=1.1e+02 Score=22.29 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=20.6
Q ss_pred cceEEEEEecCHHHHHHHHHhhCCc
Q 028447 78 PRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 78 ~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
..||.||++...++...++..+.|.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 5899999999877778888777764
No 219
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=36.11 E-value=40 Score=21.34 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=22.1
Q ss_pred HHHHHHhhccCCceEEEEeecCCCCCCcceEEEE
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 84 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV 84 (209)
+.+|+.+|-+--+|.++.|...+.-++ |-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 567888888888899988876654444 44444
No 220
>PF15063 TC1: Thyroid cancer protein 1
Probab=35.98 E-value=18 Score=23.69 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=23.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCce
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRL 64 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i 64 (209)
..+--+.||-.+++...|+.+|+.-|..
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 3344578888999999999999999964
No 221
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=35.69 E-value=31 Score=30.76 Aligned_cols=53 Identities=21% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 45 LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 45 L~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
+.......-+..+|+.+|.++...++... -|+..|.|. +.|..+|..++...|
T Consensus 205 p~ks~~s~~r~k~fee~g~~~r~el~p~~-----hg~~~vv~~--enan~~m~s~da~ei 257 (526)
T KOG2135|consen 205 PEKSRNSENRRKFFEEFGVLERGELCPTH-----HGCVPVVSK--ENANKTMKSEDAAEI 257 (526)
T ss_pred cccccccHHhhhhhHhhceeeeccccccc-----cccceeEee--ccccccccCCcchhh
Confidence 34456677788899999988776665432 344445554 555555555544443
No 222
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=35.64 E-value=24 Score=19.69 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=10.6
Q ss_pred CCCCCHHHHHHhhccCCc
Q 028447 46 RHDCRPEDLRGPFGQFGR 63 (209)
Q Consensus 46 ~~~~t~~~L~~~f~~~G~ 63 (209)
-.++++++|+++|.+...
T Consensus 18 ~~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 18 TVDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp SS---HHHHHHHHHCS--
T ss_pred cccCCHHHHHHHHHHhcc
Confidence 346789999999987643
No 223
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=34.56 E-value=75 Score=28.64 Aligned_cols=50 Identities=8% Similarity=-0.025 Sum_probs=29.8
Q ss_pred CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 48 DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 48 ~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
.+.+.+|..-|.-+..-.+++-.. |. .|++=+.|.++++|+++++.+...
T Consensus 89 liWdqELY~nf~y~q~r~ffhtFe----gd-dc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 89 LIWDQELYQNFEYRQPRTFFHTFE----GD-DCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred eeehHHhhhhceeccCccceeeec----cc-cceeeecccCHHHHHHHHHHHHHH
Confidence 355666766666544322222111 11 446667888999999988776654
No 224
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=34.18 E-value=1.5e+02 Score=20.18 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=29.5
Q ss_pred eEEEeCCCCCCCHHHHHHh-------hccC-CceEEEEeecC-----CCCCCcce-EEEEEecCHHHHHHHHH
Q 028447 39 SLLVRNLRHDCRPEDLRGP-------FGQF-GRLKDIYLPRD-----YYTGEPRG-FGFVQYIDPADAADAKY 97 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~-------f~~~-G~i~~~~i~~~-----~~~g~~~g-~afV~f~~~~~a~~Ai~ 97 (209)
++|| |.++++++++.++ +... |+|..+...-. +-.+...| |.++.|.-..++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4555 4566666665554 4333 45555432110 01233445 57888886666665554
No 225
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=34.17 E-value=86 Score=20.32 Aligned_cols=38 Identities=11% Similarity=0.242 Sum_probs=25.7
Q ss_pred hhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce
Q 028447 57 PFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (209)
Q Consensus 57 ~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 103 (209)
.+.+||.|..+.=. ..|+. -|-+.++++..++.|....
T Consensus 16 ~L~kfG~i~Y~Skk--------~kYvv-lYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK--------MKYVV-LYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hHhhcccEEEEECC--------ccEEE-EEECHHHHHHHHHHHhcCC
Confidence 46789998765322 34554 4668888888888777543
No 226
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=34.00 E-value=1.1e+02 Score=22.03 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=25.7
Q ss_pred CCCHHHHHHhhcc-CC----ceEEEEeecCCCCCCcceEEEEEecCHHHHH
Q 028447 48 DCRPEDLRGPFGQ-FG----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93 (209)
Q Consensus 48 ~~t~~~L~~~f~~-~G----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 93 (209)
++..++|.+-+.+ |- .|.-+.+-.....|.+.|||.| |.+.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 4667777766543 32 2222334444456778889876 55665544
No 227
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=33.64 E-value=1.1e+02 Score=18.33 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=17.6
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCC-ceEEEEee
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLP 70 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~ 70 (209)
+|.|..-...-.-.+|..+|..++ .|..+...
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~ 34 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVG 34 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEee
Confidence 344432222223567778888776 56666554
No 228
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=33.08 E-value=1.4e+02 Score=26.16 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=32.9
Q ss_pred CHHHHHHhhc----cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 50 RPEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 50 t~~~L~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
..-+|..+|. .+|-|..+.|...+.. ....+.++.|.+.++|.+|+..+
T Consensus 145 ~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p-~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 145 AGYDLTGLFVGSEGTLGIVTEATLKLLPKP-ENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCChhhhcccCCccceEEEEEEEEeecCC-CccEEEEEECCCHHHHHHHHHHH
Confidence 3346777764 3677888777655432 23456678899999998887554
No 229
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=32.80 E-value=6 Score=25.02 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=29.2
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEE-EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
..|.|+.+...-..+.+...+...|.-.. +.+... +..--.-+-.|.+.++|+.++..|.
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~---~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKG---GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEE---TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecC---CceEEEEECCCCCHHHHHHHHHHHh
Confidence 45677766544333334444443343222 222211 1111222347889999999998887
No 230
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=32.70 E-value=1.4e+02 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=29.2
Q ss_pred eEEEEeecCC--CCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 64 LKDIYLPRDY--YTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 64 i~~~~i~~~~--~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
|+.|.|+... ....+..||.++|-+...|...++.|...
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 5667776533 23456889999999999999998887644
No 231
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.65 E-value=71 Score=19.47 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=12.0
Q ss_pred CHHHHHHHHHhhCCcee
Q 028447 88 DPADAADAKYHMDGYLL 104 (209)
Q Consensus 88 ~~~~a~~Ai~~l~g~~i 104 (209)
+.++++.|++.||...|
T Consensus 47 ~~~~~~~a~~~Lh~~f~ 63 (64)
T cd04917 47 KEEDKDEVVQRLHSRLF 63 (64)
T ss_pred eHHHHHHHHHHHHHHHh
Confidence 45778888888876543
No 232
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=32.53 E-value=68 Score=21.69 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=27.1
Q ss_pred CCCCeEEEeCCCCCCCHH---HHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC
Q 028447 35 DLPTSLLVRNLRHDCRPE---DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~---~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 88 (209)
+...-||||+++..+-+. .|.+.+.+-|.+. |+.. +....||+|-++.+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~av---m~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPKGSLV---ITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEE---EEEe--CCCCCCcEEEecCC
Confidence 445679999998877654 3333322223332 2221 12346788887764
No 233
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=32.52 E-value=54 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=18.6
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ 60 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~ 60 (209)
.++|+|||+.++...|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888754
No 234
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=32.50 E-value=1.4e+02 Score=19.05 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=37.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
+|.|......---.+|...|...+ .|..+.+......+......-|+..+.++....+..|..
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCT
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHC
Confidence 444444433334567778887765 677777765322333444445666788888888877765
No 235
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=32.49 E-value=1.3e+02 Score=18.88 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecC---HHHHHHHHHhhCC
Q 028447 51 PEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYID---PADAADAKYHMDG 101 (209)
Q Consensus 51 ~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~---~~~a~~Ai~~l~g 101 (209)
-.+|.+.|+.+| .|..|.-...+ .....-..||++.. ....+.+++.|..
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 466777888876 55555322111 11334456788874 4556666666543
No 236
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.43 E-value=96 Score=23.98 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=37.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCC-CCcceEEEEEecCHHHHHHHHHhh
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~-g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
..=||+|.+...+-..|-+.|...|.- |.++..+.. ..+.++-+|.|.+.++...++..+
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga~--V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGAE--VTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT-E--EEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCCE--EEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 356789999888888888888877743 333333221 124578899999999888887654
No 237
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=32.04 E-value=59 Score=26.21 Aligned_cols=24 Identities=13% Similarity=-0.049 Sum_probs=20.2
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCC
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFG 62 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G 62 (209)
-++|+|||+.++...|..++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 478999999999999999986444
No 238
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.01 E-value=2.2e+02 Score=26.38 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=35.3
Q ss_pred HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC--Cc-----ee-cCeEEEEEEeccCCCCC
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD--GY-----LL-LGRELTVVFAEENRKKP 121 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~--g~-----~i-~g~~i~V~~a~~~~~~~ 121 (209)
.++|.+.|..-+.|..|.+.- .||-++.+....-+...+..+. +. .+ .|++|.|+|+.+...+|
T Consensus 60 A~~i~~~l~~~~~~~~veiaG-------pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkp 131 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIAG-------PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGP 131 (577)
T ss_pred HHHHHHhccccCcEeEEEEcC-------CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCC
Confidence 345566666555567777751 2444444443223333323333 11 12 57899999998877665
No 239
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=31.84 E-value=1e+02 Score=30.13 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=26.1
Q ss_pred ceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 79 ~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
+||-|||-.....+..||+.|-+..+. +.|.|
T Consensus 210 kGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 210 KGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred ceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 899999999999999999988877666 44444
No 240
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=31.12 E-value=21 Score=30.28 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=5.2
Q ss_pred ceEEEEEec
Q 028447 79 RGFGFVQYI 87 (209)
Q Consensus 79 ~g~afV~f~ 87 (209)
.||-||.|.
T Consensus 160 lGFmYiRYt 168 (453)
T KOG2888|consen 160 LGFMYIRYT 168 (453)
T ss_pred heeeEEeec
Confidence 456666664
No 241
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=30.99 E-value=1e+02 Score=22.44 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=23.5
Q ss_pred EEEEecC--------HHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 82 GFVQYID--------PADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 82 afV~f~~--------~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
|||+|++ .+-|...++.+|.+.--|..|.|++-
T Consensus 21 AFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl 61 (129)
T COG1098 21 AFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVL 61 (129)
T ss_pred eEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEE
Confidence 6888876 35566777777777667777777764
No 242
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=30.84 E-value=55 Score=27.34 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=18.6
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ 60 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~ 60 (209)
.+.|+|||+.++...|..++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4778999999999888888864
No 243
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=30.71 E-value=18 Score=22.13 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=18.0
Q ss_pred cceEEEEEecC-HHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 78 PRGFGFVQYID-PADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 78 ~~g~afV~f~~-~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..|||||...+ .++.--.-..|++ .++|-.+.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 37999999886 2221111223332 3456667776655
No 244
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=30.44 E-value=2.2e+02 Score=25.40 Aligned_cols=66 Identities=12% Similarity=0.004 Sum_probs=41.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccC----CceEEEEeecCCCCC--------CcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQF----GRLKDIYLPRDYYTG--------EPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~----G~i~~~~i~~~~~~g--------~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
+..|.+.+=.+.++.+.|++++... ..+.-+.+..+.-+| ...-.++||..+..++++.|+.+|..
T Consensus 97 g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtG 174 (460)
T COG1207 97 GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTG 174 (460)
T ss_pred CcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeee
Confidence 4577777777888888888777654 233333322222122 22446888888888888887766653
No 245
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=30.39 E-value=1.6e+02 Score=25.55 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=32.9
Q ss_pred CCHHHHHHhhccCC-ceE----EEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 49 CRPEDLRGPFGQFG-RLK----DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 49 ~t~~~L~~~f~~~G-~i~----~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
.|..+++++|++-- .|. .+.|+ | ++..+.-+-||++.+.+++..||+.|.
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~l~~l-D-q~~lP~~~~~~~~~~~~~v~~aI~~M~ 57 (363)
T PRK05772 3 LTVKEVKELFKPKLLPIIWKDNTLTLL-D-QSLLPFETVYVDLKTVEEVALAIRNMQ 57 (363)
T ss_pred chHHHHHHHhCCCCceEEecCCEEEEE-e-cCCCCCeEEEEEeCCHHHHHHHHHhCc
Confidence 46678888887531 111 12222 2 234566789999999999999998764
No 246
>PHA03008 hypothetical protein; Provisional
Probab=30.24 E-value=60 Score=25.59 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR 71 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~ 71 (209)
..-.+||.|+..--+..-|+-||.+|..+.++.++.
T Consensus 20 ~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvp 55 (234)
T PHA03008 20 ICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVP 55 (234)
T ss_pred cccEEEEecccccccccHHHHHHhhccccceEEEcc
Confidence 345689999999999999999999999988887763
No 247
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=29.42 E-value=84 Score=23.95 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=24.8
Q ss_pred CCCCeEEEeCCCCC---CCHHHHHHhhccCCceEEE
Q 028447 35 DLPTSLLVRNLRHD---CRPEDLRGPFGQFGRLKDI 67 (209)
Q Consensus 35 ~~~~~i~V~nL~~~---~t~~~L~~~f~~~G~i~~~ 67 (209)
+.+++|||.+|.-. +-...|.+++-+-|.+..+
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~ 64 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYI 64 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEE
Confidence 56899999999754 4466777777777877654
No 248
>PRK02886 hypothetical protein; Provisional
Probab=29.25 E-value=1.1e+02 Score=20.70 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=25.7
Q ss_pred hhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce
Q 028447 57 PFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (209)
Q Consensus 57 ~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 103 (209)
.+.+||.|..+.=. ..|+ |-|.+.++|+..++.|....
T Consensus 20 ~LrkyG~I~Y~Skr--------~kYv-vlYvn~~~~e~~~~kl~~l~ 57 (87)
T PRK02886 20 QLRKFGNVHYVSKR--------LKYA-VLYCDMEQVEDIMNKLSSLP 57 (87)
T ss_pred HHhhcCcEEEEecc--------ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 35689998765322 3455 44668888888888877643
No 249
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=28.85 E-value=82 Score=27.06 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=25.7
Q ss_pred CCCCCCCHHHHHHhhccC-CceEEEEeecC---CCC--CCcceEEEEEecC
Q 028447 44 NLRHDCRPEDLRGPFGQF-GRLKDIYLPRD---YYT--GEPRGFGFVQYID 88 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~~~-G~i~~~~i~~~---~~~--g~~~g~afV~f~~ 88 (209)
.|...++.++|.++|..| ..-..|.|+.. +.+ =....||.|-|..
T Consensus 252 ~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~ 302 (349)
T COG0002 252 KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAV 302 (349)
T ss_pred ecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEE
Confidence 355668999999998764 44344555432 111 1234566666643
No 250
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=28.53 E-value=90 Score=19.88 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCCHHHHHHhhccCCceEEEEe-ecCCCCCCcceEEEEEec-CHHHHHHHHHhhCC
Q 028447 48 DCRPEDLRGPFGQFGRLKDIYL-PRDYYTGEPRGFGFVQYI-DPADAADAKYHMDG 101 (209)
Q Consensus 48 ~~t~~~L~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~-~~~~a~~Ai~~l~g 101 (209)
.+.+..|.++...||--..+.. ..+...+...|.-+|++. +.++.++|+..|..
T Consensus 13 ~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 13 SAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp SSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 3455556666667763332211 111224566788888985 34556777777654
No 251
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=28.12 E-value=77 Score=27.75 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=35.4
Q ss_pred CCCCCCCHHHHHHhhc----cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHH
Q 028447 44 NLRHDCRPEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 95 (209)
.|-.+-|--+|+.+|- ..|.|..+.|...+ .-+....||+-.++.++++++
T Consensus 231 slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~-kpksvn~af~gi~sf~~v~k~ 285 (511)
T KOG1232|consen 231 SLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPP-KPKSVNVAFIGIESFDDVQKV 285 (511)
T ss_pred hhcccCccccchhheecCCceeeEEeeEEEeecC-CCcceeEEEEccccHHHHHHH
Confidence 3445566678888883 45778888776554 234567899988888777664
No 252
>PRK02302 hypothetical protein; Provisional
Probab=27.95 E-value=1.2e+02 Score=20.64 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=25.7
Q ss_pred hhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce
Q 028447 57 PFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (209)
Q Consensus 57 ~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 103 (209)
.+.+||.|..+.=. ..|+ |-|.+.++|+..++.|....
T Consensus 22 ~LrkfG~I~Y~Skk--------~kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSKR--------SRYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEecc--------ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 35689998765322 3455 44668888988888877643
No 253
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.75 E-value=1.7e+02 Score=22.54 Aligned_cols=81 Identities=9% Similarity=0.040 Sum_probs=39.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEE-EEecCHHH---HHHHHHhhCCceecCeEEEEEEe
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGF-VQYIDPAD---AADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~af-V~f~~~~~---a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
.|.|.-=|..++-++|.++|-..-....+ . ..-+.....|-- |-+.+.++ |++.++.|....+.+.+|.+++.
T Consensus 59 ~V~V~yDp~~isy~~LL~~ff~ihDPT~~--n-rQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~ 135 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVFFEIHDPTSL--N-RQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIE 135 (174)
T ss_pred EEEEEeCCccccHHHHHHHHheecCCCCC--C-ccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEee
Confidence 45555556677877777776543111111 0 000111222322 33344444 44455566555566778888877
Q ss_pred ccCCCCCh
Q 028447 115 EENRKKPS 122 (209)
Q Consensus 115 ~~~~~~~~ 122 (209)
..+.--++
T Consensus 136 p~~~Fy~A 143 (174)
T COG0225 136 PAKNFYPA 143 (174)
T ss_pred ccccCccc
Confidence 65544333
No 254
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=27.42 E-value=2.9e+02 Score=21.25 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=12.2
Q ss_pred eEEEEEec----CHHHHHHHHHhh
Q 028447 80 GFGFVQYI----DPADAADAKYHM 99 (209)
Q Consensus 80 g~afV~f~----~~~~a~~Ai~~l 99 (209)
|-.++|+. +.+.|..|+...
T Consensus 129 G~ilfei~~~~~~~~~akeAlr~a 152 (172)
T PRK04199 129 GQKIFTVRVNPEHLEAAKEALRRA 152 (172)
T ss_pred CCEEEEEEecCCCHHHHHHHHHHh
Confidence 34455554 667788888543
No 255
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=27.36 E-value=87 Score=23.34 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=18.6
Q ss_pred CeEEEeCCCCCCCHHHHHHhhcc
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQ 60 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~ 60 (209)
.-++|+|+|+.++...|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 35778999999988888888764
No 256
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=27.32 E-value=2e+02 Score=21.93 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=22.2
Q ss_pred cCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 87 IDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 87 ~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.+.++.++|++.++.....|+.+.|.-
T Consensus 90 Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 90 PSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred CCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 467888999998888888898887764
No 257
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=26.99 E-value=1.8e+02 Score=20.37 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=14.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHH
Q 028447 35 DLPTSLLVRNLRHDCRPEDLR 55 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~ 55 (209)
.....||||+++.....+.|.
T Consensus 4 ~i~~~l~~g~~~~~~d~~~L~ 24 (139)
T cd00127 4 EITPGLYLGSYPAASDKELLK 24 (139)
T ss_pred EEcCCeEECChhHhcCHHHHH
Confidence 345679999999766555543
No 258
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=26.93 E-value=2.3e+02 Score=19.90 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=23.9
Q ss_pred HHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHH
Q 028447 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95 (209)
Q Consensus 52 ~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 95 (209)
.+|.++++..|.-... |..+.. .+.-||++++.+.+..-++
T Consensus 27 PE~~a~lk~agi~nYS-IfLde~--~n~lFgy~E~~d~~a~m~~ 67 (105)
T COG3254 27 PELLALLKEAGIRNYS-IFLDEE--ENLLFGYWEYEDFEADMAK 67 (105)
T ss_pred HHHHHHHHHcCCceeE-EEecCC--cccEEEEEEEcChHHHHHH
Confidence 3677778888744433 333321 2367999999855444333
No 259
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=26.89 E-value=2.3e+02 Score=26.03 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=34.0
Q ss_pred CHHHHHHhh----ccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 50 RPEDLRGPF----GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 50 t~~~L~~~f----~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
+.-+|..+| ..+|-|.++.|...+.. .....+++.|.+.++|.+|+..+.
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p~P-~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQKIP-QHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeecCC-cceEEEEEEcCCHHHHHHHHHHHH
Confidence 335677776 35778888877544321 335677889999999988876643
No 260
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=26.65 E-value=1.3e+02 Score=23.63 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=31.9
Q ss_pred CHHHHHHhhccCCc---eEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec
Q 028447 50 RPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (209)
Q Consensus 50 t~~~L~~~f~~~G~---i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 105 (209)
+.+++.++...+|. |....+.. .|..++-+...-.+.++|..+...|-|..|.
T Consensus 26 s~eea~~~~~~l~~~~~VvKaQvl~---GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 26 SPEEAREAAKELGGKPLVVKAQVLA---GGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SHHHHHHHHHHHTTSSEEEEE-SSS---STTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CHHHHHHHHHHhCCCcEEEEEeEee---cCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 56677766666553 33334432 2333432332345789999999999998876
No 261
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.44 E-value=1.8e+02 Score=21.74 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
.|+..+.++-|+++.+-.|-|.+.. -.| ..+.|.+.+.+..|++.+.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 4777888889999998889887654 222 3467889999999998764
No 262
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=26.39 E-value=1.3e+02 Score=19.60 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=16.1
Q ss_pred ceEEEEEecCHHHHHHHHHhhCCce
Q 028447 79 RGFGFVQYIDPADAADAKYHMDGYL 103 (209)
Q Consensus 79 ~g~afV~f~~~~~a~~Ai~~l~g~~ 103 (209)
.+..+|.|+..++-++|. .|.|..
T Consensus 54 ~~~~i~~~~gi~~r~~Ae-~l~g~~ 77 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAE-ALRGCE 77 (84)
T ss_dssp TTEEEEEETT--SHHHHH-TTTT-E
T ss_pred CCEEEEEEcCCCCHHHHH-hhCCCE
Confidence 567889999888888776 666654
No 263
>PF14268 YoaP: YoaP-like
Probab=26.37 E-value=67 Score=18.74 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=24.8
Q ss_pred EEEEecCHHHHHHHHHhhCCc--eecCeEEEEEEec
Q 028447 82 GFVQYIDPADAADAKYHMDGY--LLLGRELTVVFAE 115 (209)
Q Consensus 82 afV~f~~~~~a~~Ai~~l~g~--~i~g~~i~V~~a~ 115 (209)
-+|.+++.|+|+.|-.-++.. .++|..|.+++-.
T Consensus 3 ~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eils 38 (44)
T PF14268_consen 3 KLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEILS 38 (44)
T ss_pred EEEEeccHHHHhcCCCceeEEEEEECCEEEEeeccC
Confidence 467888899998876555553 4678888888743
No 264
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=26.30 E-value=1.3e+02 Score=20.28 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=18.0
Q ss_pred ceEEEEEecCHHHHHHHHHhhCCc
Q 028447 79 RGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 79 ~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
.||.||++.-.+++..+|..+.|.
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCc
Confidence 499999998666667777777663
No 265
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.26 E-value=93 Score=25.41 Aligned_cols=58 Identities=17% Similarity=0.029 Sum_probs=35.7
Q ss_pred CCeEEEeCCCCC-----CCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec---CHHHHHHHHHhhC
Q 028447 37 PTSLLVRNLRHD-----CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYHMD 100 (209)
Q Consensus 37 ~~~i~V~nL~~~-----~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~---~~~~a~~Ai~~l~ 100 (209)
..+|.|.|++.. .+.++|..++..++....+.++.| .+.+|+.-. +.+....+++.+.
T Consensus 137 ~v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lD------t~H~~~~g~~~~~~~~~~~~~~~~~ 202 (274)
T TIGR00587 137 IVTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLD------TCHFFAAGYDITTKAYFEVVKNEFD 202 (274)
T ss_pred CCEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEE------hhhHHhcCCCcCCHHHHHHHHHHHH
Confidence 477899998742 478889999988875445666666 233443222 3445555555443
No 266
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=26.11 E-value=2.3e+02 Score=19.57 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=33.9
Q ss_pred CCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 49 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 49 ~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
-.+++|..+...-|.|.+|.+...- .+.--+.+...+..|++.+++.|+.
T Consensus 9 ~~~~EL~~IVd~Gg~V~DV~veHp~---YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 9 EIEDELEIIVDNGGRVLDVIVEHPV---YGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GHHHHHHHHHHTT-EEEEEEEEETT---TEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCC---CcEEEEEEecCCHHHHHHHHHHHhc
Confidence 3467777777766788888775432 2244567788899999999987764
No 267
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=25.84 E-value=81 Score=24.15 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=24.1
Q ss_pred CCeEEEeCCCC--CC-CHHHHHHhhccCCceEEEEee
Q 028447 37 PTSLLVRNLRH--DC-RPEDLRGPFGQFGRLKDIYLP 70 (209)
Q Consensus 37 ~~~i~V~nL~~--~~-t~~~L~~~f~~~G~i~~~~i~ 70 (209)
-..+||-+.+. +. ..+.|.++.+.||.|..+.+.
T Consensus 21 ~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~ 57 (195)
T PF01762_consen 21 VKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFV 57 (195)
T ss_pred EEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecc
Confidence 45677777776 32 244588888999999877765
No 268
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=25.83 E-value=1.2e+02 Score=22.18 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=25.0
Q ss_pred ceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 79 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 79 ~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
..+-+..+.+.. ...++..|.+..+.|++|.|..-
T Consensus 26 ~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~ 60 (145)
T PF13689_consen 26 SPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRL 60 (145)
T ss_pred CCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEEC
Confidence 345555565544 45678888889999999998764
No 269
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=25.80 E-value=2.1e+02 Score=23.00 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=33.5
Q ss_pred CCCCCeEEEeCCCCCCC---H----HHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC
Q 028447 34 RDLPTSLLVRNLRHDCR---P----EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 106 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t---~----~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 106 (209)
.++..+|||........ . +.|+++++.-..|..|-|.. +.+..+.+.+....+|+.|... |
T Consensus 115 ~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~---------H~~~~~~~~~~~~~~l~~~~~~---g 182 (254)
T smart00633 115 ADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQS---------HLSLGSPNIAEIRAALDRFASL---G 182 (254)
T ss_pred hCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeee---------eecCCCCCHHHHHHHHHHHHHc---C
Confidence 35678999975432222 1 22333333323354444421 1122334567777777776532 6
Q ss_pred eEEEEE
Q 028447 107 RELTVV 112 (209)
Q Consensus 107 ~~i~V~ 112 (209)
.+|.|.
T Consensus 183 ~pi~iT 188 (254)
T smart00633 183 LEIQIT 188 (254)
T ss_pred CceEEE
Confidence 677765
No 270
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=25.28 E-value=3.2e+02 Score=21.02 Aligned_cols=11 Identities=18% Similarity=-0.028 Sum_probs=7.7
Q ss_pred CHHHHHHHHHh
Q 028447 88 DPADAADAKYH 98 (209)
Q Consensus 88 ~~~~a~~Ai~~ 98 (209)
+.+.|..|+..
T Consensus 141 ~~~~AkeAlr~ 151 (172)
T TIGR00279 141 NFDVAKEALRR 151 (172)
T ss_pred CHHHHHHHHHH
Confidence 55788888854
No 271
>PRK10162 acetyl esterase; Provisional
Probab=24.82 E-value=2.1e+02 Score=23.86 Aligned_cols=58 Identities=14% Similarity=0.002 Sum_probs=34.3
Q ss_pred CCCeEEEeCCCCCCCH-HHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec-CHHHHHHHHHhh
Q 028447 36 LPTSLLVRNLRHDCRP-EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYHM 99 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~-~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~-~~~~a~~Ai~~l 99 (209)
+++-|+++.......+ ..+.+.+.+.|.-..+.+... ..++|+.|. ..++|+.|++.+
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g------~~H~f~~~~~~~~~a~~~~~~~ 308 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPG------TLHAFLHYSRMMDTADDALRDG 308 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECC------CceehhhccCchHHHHHHHHHH
Confidence 4555666766665553 445666777775555554422 456777775 356666666543
No 272
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=24.73 E-value=1.9e+02 Score=18.30 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=27.5
Q ss_pred HHHHHHhhccCCceEEEEeecCCCCCCc-ceEEEEEec-CHHHHHHHHHhhCC
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEP-RGFGFVQYI-DPADAADAKYHMDG 101 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~-~g~afV~f~-~~~~a~~Ai~~l~g 101 (209)
-.++.+.|+.+| |.-..|..-+..+.. .-+-||+|+ ..++.++|++.|..
T Consensus 14 L~~vL~~f~~~~-iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFG-VNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCC-CcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 456677777776 232333333322222 334568877 45556677777654
No 273
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=24.53 E-value=76 Score=22.17 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=15.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhc
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFG 59 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~ 59 (209)
...++.++++.||. .+|+++|+.
T Consensus 61 ekeg~~i~~g~lPt---~~eVe~Fl~ 83 (105)
T PF09702_consen 61 EKEGNYIIVGYLPT---DEEVEDFLD 83 (105)
T ss_pred cCCCCEEecCCCCC---hHHHHHHHH
Confidence 34568899999985 556666654
No 274
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=24.44 E-value=1.6e+02 Score=17.38 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=14.3
Q ss_pred CHHHHHHhhccCC-ceEEEEee
Q 028447 50 RPEDLRGPFGQFG-RLKDIYLP 70 (209)
Q Consensus 50 t~~~L~~~f~~~G-~i~~~~i~ 70 (209)
.-.+|-.+|..++ .|..+.+.
T Consensus 12 ~l~~i~~~l~~~~~nI~~~~~~ 33 (71)
T cd04879 12 VIGKVGTILGEHGINIAAMQVG 33 (71)
T ss_pred HHHHHHHHHHhcCCCeeeEEEe
Confidence 4567778888776 66666654
No 275
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.11 E-value=1.8e+02 Score=17.71 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=26.4
Q ss_pred HHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 51 PEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 51 ~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
-.+|..+|..+| .|..+...... .+ ..+...+.+...++.+.+++.|.
T Consensus 15 L~~l~~~l~~~~i~i~~~~~~~~~-~~-~~~~~~i~v~~~~~~~~~~~~L~ 63 (69)
T cd04909 15 IAEVTQILGDAGISIKNIEILEIR-EG-IGGILRISFKTQEDRERAKEILK 63 (69)
T ss_pred HHHHHHHHHHcCCCceeeEeEEee-cC-CcEEEEEEECCHHHHHHHHHHHH
Confidence 456778887776 56555443221 11 24555677755555555555543
No 276
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=23.51 E-value=1.2e+02 Score=28.37 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=39.3
Q ss_pred CCCeEEEeCCCCCCCHHHH-HHhhccCCceEEEEeecCCCCCCcceEEEEEec-----CHHHHHHHHHhhC
Q 028447 36 LPTSLLVRNLRHDCRPEDL-RGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-----DPADAADAKYHMD 100 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L-~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~-----~~~~a~~Ai~~l~ 100 (209)
+++.|...++.+-.++..+ ..-+...|+++.+.|+.+ ...+|+.|. ..+.++.+|+.|.
T Consensus 788 Pp~~i~ac~mDP~LDD~vmfA~kLr~lG~~v~l~vle~------lPHGFLnft~ls~E~~~~~~~CI~rl~ 852 (880)
T KOG4388|consen 788 PPVHIVACAMDPMLDDSVMFARKLRNLGQPVTLRVLED------LPHGFLNFTALSRETRQAAELCIERLR 852 (880)
T ss_pred CCceEEEeccCcchhHHHHHHHHHHhcCCceeehhhhc------CCccceeHHhhCHHHHHHHHHHHHHHH
Confidence 4667777788776665432 334566799999988855 456788885 3456666666554
No 277
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=23.48 E-value=1.4e+02 Score=21.16 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHhhccCCceEEEEee
Q 028447 46 RHDCRPEDLRGPFGQFGRLKDIYLP 70 (209)
Q Consensus 46 ~~~~t~~~L~~~f~~~G~i~~~~i~ 70 (209)
...||.++|++.|..|-.-.++.|+
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEEE
Confidence 3588999999999999754444443
No 278
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=23.28 E-value=24 Score=28.91 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=45.3
Q ss_pred eEEEeCCCCCCCHHH-H--HHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 39 SLLVRNLRHDCRPED-L--RGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~-L--~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
.++++++-..+..+- | ...|..|-.+....++.+. .+...+++|+.|........+...-+++.|.-.+|++
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 344555544444333 2 5667767666666666553 4566889999998777777777666666666555443
No 279
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=23.08 E-value=1e+02 Score=21.78 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=17.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccC
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQF 61 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~ 61 (209)
+..++-|+ +|.+++..++..++.+.
T Consensus 39 ~l~k~Kfl--Vp~~~tv~~f~~~irk~ 63 (112)
T cd01611 39 DLDKKKYL--VPSDLTVGQFVYIIRKR 63 (112)
T ss_pred cccCceEE--ecCCCCHHHHHHHHHHH
Confidence 44555665 78888888887777654
No 280
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=23.05 E-value=2e+02 Score=19.39 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=31.6
Q ss_pred EEEeCCCCCCCHHHHHHhh-ccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 40 LLVRNLRHDCRPEDLRGPF-GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 40 i~V~nL~~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
|.+-.||..++-++|.+-+ ..|+--..+.|.+.-. | .+|+..+.++.+.||...
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-G-----D~iti~sq~DLd~Ai~~a 67 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-G-----DMITMGDQDDLDMAIDTA 67 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-C-----CCccccCHHHHHHHHHHH
Confidence 3344688888877765444 2343223333332221 2 578888988888888654
No 281
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=22.99 E-value=2.5e+02 Score=19.08 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHh----------hccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 44 NLRHDCRPEDLRGP----------FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 44 nL~~~~t~~~L~~~----------f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
+||.++..+++.++ ++.-|++..+.-+ .|.-..++...-++.++....|..|.-+.+
T Consensus 9 ~~P~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv----~G~~~n~sifdv~s~~eLh~iL~sLPL~p~ 75 (90)
T TIGR03221 9 NLPVDMPAEKAAAIKAREKAYAQELQREGKWRHLWRV----AGEYANYSIFDVESNDELHTLLSGLPLFPY 75 (90)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEe----cCCceeEEEEEcCCHHHHHHHHHhCCCCcc
Confidence 78888887665543 4566888888766 566688899999999999988877766544
No 282
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=22.87 E-value=2.7e+02 Score=23.18 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=18.3
Q ss_pred hhccCCceEEEEeecCCCCCCcceEEEEEec
Q 028447 57 PFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87 (209)
Q Consensus 57 ~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 87 (209)
.|..||.|..|+.-.....+..+-.-|+...
T Consensus 52 ~f~~~GdV~alkaEe~~d~~~gkl~L~A~i~ 82 (276)
T PF05929_consen 52 PFGNYGDVLALKAEEIDDGGKGKLALFAQID 82 (276)
T ss_pred ccccccceEEEEEEEcccCCCCeEEEEEEeC
Confidence 4789999988876654332333333445554
No 283
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=22.51 E-value=2.4e+02 Score=18.70 Aligned_cols=45 Identities=11% Similarity=0.246 Sum_probs=21.8
Q ss_pred CCCHHHHHHhhcc-CC----ceEEEEeecCCCCCCcceEEEEEecCHHHHH
Q 028447 48 DCRPEDLRGPFGQ-FG----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93 (209)
Q Consensus 48 ~~t~~~L~~~f~~-~G----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 93 (209)
..+..+|++.+.+ |+ .|.-..|......+.+.|||.| |.+.+.++
T Consensus 12 Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~k 61 (84)
T PF01282_consen 12 TPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALK 61 (84)
T ss_dssp S--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHH
Confidence 3455666665543 33 2222234444334555677765 55666654
No 284
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.31 E-value=1.7e+02 Score=25.19 Aligned_cols=51 Identities=12% Similarity=-0.091 Sum_probs=33.5
Q ss_pred HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
-++|+..|..---+..+.... .--||.|....+.++-|...++..+.+.+|
T Consensus 264 Y~~Le~HF~~~hy~ct~qtc~--------~~k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 264 YEDLEAHFRNAHYCCTFQTCR--------VGKCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred HHHHHHHhhcCceEEEEEEEe--------cCcEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 356666666544444443332 224788999999888888888877776544
No 285
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=22.18 E-value=1.9e+02 Score=22.72 Aligned_cols=57 Identities=19% Similarity=0.099 Sum_probs=35.8
Q ss_pred CCHHHHH---HhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe
Q 028447 49 CRPEDLR---GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (209)
Q Consensus 49 ~t~~~L~---~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 107 (209)
+++.+|. .+...||.. ..|+.|..++.+.-+.|+.=.+.+.+..|++.+....+...
T Consensus 39 i~~~~lk~F~k~AkKyGV~--yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~~ 98 (204)
T PF12687_consen 39 ITDEDLKEFKKEAKKYGVD--YAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKKE 98 (204)
T ss_pred cCHhhHHHHHHHHHHcCCc--eEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhhh
Confidence 3455554 445677732 34556665555555666666788888888888877655543
No 286
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=21.89 E-value=30 Score=30.00 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCce
Q 028447 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64 (209)
Q Consensus 29 ~~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i 64 (209)
++.|++=++|+|||.|++. |-.||+-...+
T Consensus 308 AgAPDRCPPT~LyVAGmaE------LGAFFSILQDM 337 (428)
T PF00846_consen 308 AGAPDRCPPTCLYVAGMAE------LGAFFSILQDM 337 (428)
T ss_dssp ------------------------------------
T ss_pred cCCCCCCCcceeeecCcHH------HHHHHHHHHHH
Confidence 5677888999999999874 55566544433
No 287
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=21.79 E-value=1.7e+02 Score=26.11 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=40.5
Q ss_pred CCeEEEeCCCCCC---CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEe--c-------CHHHHHHHHHhhCCcee
Q 028447 37 PTSLLVRNLRHDC---RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--I-------DPADAADAKYHMDGYLL 104 (209)
Q Consensus 37 ~~~i~V~nL~~~~---t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f--~-------~~~~a~~Ai~~l~g~~i 104 (209)
.+.++|.+=+.+. ...+|++++...|...++.|+ .||-.++- . -.+.+...++.|.. .
T Consensus 179 aNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vl--------SG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~--~ 248 (446)
T TIGR02045 179 SGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAIL--------SGYQGIKEEYSDGKTAKYYLERAKEDIELLKK--N 248 (446)
T ss_pred CCeEEEecCCccccceecHHHHHhhhhhhhcccEEEE--------EchhhhhhhccCCccHhHHHHHHHHHHHHHhh--C
Confidence 4455554433332 457788888888776666666 34433321 1 14556666666633 2
Q ss_pred cCeEEEEEEec
Q 028447 105 LGRELTVVFAE 115 (209)
Q Consensus 105 ~g~~i~V~~a~ 115 (209)
.+-+|++++|.
T Consensus 249 ~~i~iH~E~As 259 (446)
T TIGR02045 249 KDLKIHVEFAS 259 (446)
T ss_pred CCCeEEEEecc
Confidence 67788888875
No 288
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=21.73 E-value=2.8e+02 Score=20.33 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=22.5
Q ss_pred CCCHHHHHHhhcc-CC-ceEEEEee----cCCCCCCcceEEEEEecCHHHHH
Q 028447 48 DCRPEDLRGPFGQ-FG-RLKDIYLP----RDYYTGEPRGFGFVQYIDPADAA 93 (209)
Q Consensus 48 ~~t~~~L~~~f~~-~G-~i~~~~i~----~~~~~g~~~g~afV~f~~~~~a~ 93 (209)
..+..+|.+.+.+ |+ .-.++.++ ...-.|.+.|||.| |.+.+.|.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 4556777666653 44 22222222 22234556677765 55665544
No 289
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=21.46 E-value=2.6e+02 Score=18.61 Aligned_cols=64 Identities=11% Similarity=-0.085 Sum_probs=34.8
Q ss_pred EeCCCC--CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 42 VRNLRH--DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 42 V~nL~~--~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
...|+. .++.++|.+.+...-.+..+.|.+-...+ =.|......+.+.|++.+.. .|..|.+..
T Consensus 13 rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~-----e~v~lssd~eLeE~~rl~~~---~~~~l~~~v 78 (81)
T cd06396 13 SFLVSDSENTTWASVEAMVKVSFGLNDIQIKYVDEEN-----EEVSVNSQGEYEEALKSAVR---QGNLLQMNV 78 (81)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhCCCcceeEEEcCCC-----CEEEEEchhhHHHHHHHHHh---CCCEEEEEE
Confidence 345666 77888888777543333333333221122 24566667777778765443 245555544
No 290
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=21.22 E-value=87 Score=26.51 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..-..++.++|.++|..--++ .+. .| --..+|=++.+..+|+.|++.|... .-..++.|.+.-
T Consensus 136 ~Y~~~~~~~el~~~~k~qle~---~~~----~g-vD~L~fETip~~~EA~a~l~~l~~~-~~~~p~~is~t~ 198 (317)
T KOG1579|consen 136 IYGDNVEFEELYDFFKQQLEV---FLE----AG-VDLLAFETIPNVAEAKAALELLQEL-GPSKPFWISFTI 198 (317)
T ss_pred ccccccCHHHHHHHHHHHHHH---HHh----CC-CCEEEEeecCCHHHHHHHHHHHHhc-CCCCcEEEEEEe
Confidence 334567888899988753221 111 01 1345777788899999999877654 234455665544
No 291
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.19 E-value=2.9e+02 Score=19.09 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCCHHHHHHhhc-cCCceEEEEeecC----CCCCCcceEEEEEecCHHHHHH
Q 028447 48 DCRPEDLRGPFG-QFGRLKDIYLPRD----YYTGEPRGFGFVQYIDPADAAD 94 (209)
Q Consensus 48 ~~t~~~L~~~f~-~~G~i~~~~i~~~----~~~g~~~g~afV~f~~~~~a~~ 94 (209)
..+..+|.+.+. .|+.-.++.++.. .-.|.+.|||.| |.+.+.|..
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 345666665554 4553223333322 223455666655 556665543
No 292
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.80 E-value=1.2e+02 Score=22.35 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHhhccCC------ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 45 LRHDCRPEDLRGPFGQFG------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 45 L~~~~t~~~L~~~f~~~G------~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
|+.+.+.++|++|...|. .|..|.|..-...|+..|-| |.|. . +.||+.+.+
T Consensus 37 l~~~~~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga-~~FK-m---EaaIQL~~~ 94 (138)
T PF11215_consen 37 LSDDNSTEEVRKFQFTFAKLMEDYKVDKVVIKERATKGKFAGGA-VGFK-M---EAAIQLIDD 94 (138)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCccCCc-hhHH-H---HHHHHhcCC
Confidence 445556666665544332 57778777666667766644 5663 3 345544433
No 293
>PHA01632 hypothetical protein
Probab=20.57 E-value=81 Score=19.39 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=15.1
Q ss_pred EeCCCCCCCHHHHHHhhcc
Q 028447 42 VRNLRHDCRPEDLRGPFGQ 60 (209)
Q Consensus 42 V~nL~~~~t~~~L~~~f~~ 60 (209)
|..+|...|+++|+.++.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 4578999999999877643
No 294
>PHA03048 IMV membrane protein; Provisional
Probab=20.50 E-value=14 Score=24.98 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=14.6
Q ss_pred ceEEEEEecCHHHHHHHHHhhCC
Q 028447 79 RGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 79 ~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
.-||||+|........++++|.+
T Consensus 26 CIfAfidfsK~k~~~~~wRalsi 48 (93)
T PHA03048 26 CIFAFVDFSKNKATVTVWRALSG 48 (93)
T ss_pred HHHhhhhhhcCCCcchhHHHHHH
Confidence 45899999866554555555443
No 295
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=20.44 E-value=2.4e+02 Score=17.81 Aligned_cols=52 Identities=21% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCC-CCCCHHHHHHhhc-cCCce-EEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 44 NLR-HDCRPEDLRGPFG-QFGRL-KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 44 nL~-~~~t~~~L~~~f~-~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
.++ ..++-++|...+. .|+.. ..+.|..... .| .+|...+.++.+.|+..+.
T Consensus 15 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~----e~-d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 15 VVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDE----DG-DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCC----CC-CEEEeCCHHHHHHHHHHHh
Confidence 345 7778777776654 34432 2333322211 22 6899999999999998765
No 296
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.37 E-value=21 Score=25.55 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=9.8
Q ss_pred CCCCeEEEeCCC
Q 028447 35 DLPTSLLVRNLR 46 (209)
Q Consensus 35 ~~~~~i~V~nL~ 46 (209)
+....||||+||
T Consensus 90 ~~~~~lyvGG~p 101 (131)
T PF00054_consen 90 DVDGPLYVGGLP 101 (131)
T ss_dssp EECSEEEESSSS
T ss_pred ccccCEEEccCC
Confidence 445679999999
No 297
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=20.30 E-value=1.6e+02 Score=18.87 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=23.9
Q ss_pred eEEEEEecCHHHHHHHHHhhCC------------ceecCeEEEEEEec
Q 028447 80 GFGFVQYIDPADAADAKYHMDG------------YLLLGRELTVVFAE 115 (209)
Q Consensus 80 g~afV~f~~~~~a~~Ai~~l~g------------~~i~g~~i~V~~a~ 115 (209)
..+-|.|.+.++|+.+++.|.- ..++|..|.|.|.-
T Consensus 3 ~~l~i~f~s~~~A~ii~~sL~~d~e~~~~~~~~~~~~~~~~L~i~~~A 50 (76)
T PF09341_consen 3 FTLEIPFESEEKAEIIYRSLKPDKELKPSRVKRELSVDGNKLVITIEA 50 (76)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHH-SS-SSEEEEEEESSEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHHHhCCCCCCCCCcEEEEEEEeCCEEEEEEEE
Confidence 4567899999999988776632 23456677777653
No 298
>PRK15464 cold shock-like protein CspH; Provisional
Probab=20.29 E-value=69 Score=20.58 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=20.6
Q ss_pred ceEEEEEecCH-HHH---HHHHHhhCC--ceecCeEEEEEEeccC
Q 028447 79 RGFGFVQYIDP-ADA---ADAKYHMDG--YLLLGRELTVVFAEEN 117 (209)
Q Consensus 79 ~g~afV~f~~~-~~a---~~Ai~~l~g--~~i~g~~i~V~~a~~~ 117 (209)
+||+||+=.+- +++ ..||+. ++ ....|..|..++....
T Consensus 16 KGfGFI~~~~g~~DvFvH~s~l~~-~g~~~l~~G~~V~f~v~~~~ 59 (70)
T PRK15464 16 SGKGFIIPSDGRKEVQVHISAFTP-RDAEVLIPGLRVEFCRVNGL 59 (70)
T ss_pred CCeEEEccCCCCccEEEEehhehh-cCCCCCCCCCEEEEEEEECC
Confidence 78999866542 222 123321 22 2446777777776543
No 299
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=20.10 E-value=2.5e+02 Score=17.84 Aligned_cols=39 Identities=21% Similarity=0.507 Sum_probs=23.1
Q ss_pred eCCCCCCCHHHHHHhhcc--CCceEEEEeecCCCCCCcceEE-EEEecC
Q 028447 43 RNLRHDCRPEDLRGPFGQ--FGRLKDIYLPRDYYTGEPRGFG-FVQYID 88 (209)
Q Consensus 43 ~nL~~~~t~~~L~~~f~~--~G~i~~~~i~~~~~~g~~~g~a-fV~f~~ 88 (209)
.-+-..+.+ +|.+.+.+ .|.|...+|.-. .|++ +|+|.+
T Consensus 10 ~~irDRi~~-~l~~~l~~~~~g~I~~fKmtDG------~giG~vv~~~n 51 (64)
T PF11061_consen 10 SRIRDRIPK-ELVDKLGKNPIGTIKGFKMTDG------SGIGVVVEFSN 51 (64)
T ss_pred hhhhhhccH-HHHHHhccCCcEEEEEEEEecC------CcEEEEEEecC
Confidence 334444444 44555665 889999888732 4544 567764
No 300
>PLN02707 Soluble inorganic pyrophosphatase
Probab=20.08 E-value=41 Score=27.74 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=25.3
Q ss_pred HHHHHhhccCCceEEEEeecCCCCCC-cceEEEE-EecCHHHHHHHHHhhCC
Q 028447 52 EDLRGPFGQFGRLKDIYLPRDYYTGE-PRGFGFV-QYIDPADAADAKYHMDG 101 (209)
Q Consensus 52 ~~L~~~f~~~G~i~~~~i~~~~~~g~-~~g~afV-~f~~~~~a~~Ai~~l~g 101 (209)
++|+.||..|-... |+ ..-|+|+ +|.+.+.|.+.|+..+.
T Consensus 208 ~~I~~fF~~YK~~e----------GK~~n~~~~~~~~~~~~~A~~vI~e~~~ 249 (267)
T PLN02707 208 TAIRDWFRDYKIPD----------GKPANKFGLDNKPMDKDYALKVIEETNE 249 (267)
T ss_pred HHHHHHHHHhcCCC----------CCceeeccccCCcCCHHHHHHHHHHHHH
Confidence 56777787773221 11 1345554 78899999888876554
No 301
>PLN02655 ent-kaurene oxidase
Probab=20.06 E-value=1.7e+02 Score=25.64 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=32.5
Q ss_pred EEeCCCCCC---CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHH
Q 028447 41 LVRNLRHDC---RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97 (209)
Q Consensus 41 ~V~nL~~~~---t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 97 (209)
+||||..-. ....+.+++..||.|..+.+. +.-.|...+.+.++.++.
T Consensus 9 ~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~pe~~k~il~ 59 (466)
T PLN02655 9 VIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTG---------ASSVVVLNSTEVAKEAMV 59 (466)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEEC---------CEeEEEeCCHHHHHHHHH
Confidence 567764321 246788888999998766653 234667778888888774
Done!