Query 028447
Match_columns 209
No_of_seqs 301 out of 2605
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 19:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.2E-24 7.5E-29 150.6 11.3 82 35-116 17-98 (99)
2 3pgw_S U1-70K; protein-RNA com 99.9 3.7E-23 1.3E-27 179.3 17.8 85 35-119 100-184 (437)
3 3s8s_A Histone-lysine N-methyl 99.9 4.2E-23 1.4E-27 146.7 12.3 84 34-117 3-86 (110)
4 2cq0_A Eukaryotic translation 99.9 8.9E-23 3E-27 143.0 13.0 87 32-118 10-96 (103)
5 2cqb_A Peptidyl-prolyl CIS-tra 99.9 8.5E-23 2.9E-27 142.8 11.4 87 33-119 8-94 (102)
6 2lkz_A RNA-binding protein 5; 99.9 3.8E-23 1.3E-27 143.2 9.2 87 30-116 2-94 (95)
7 2lxi_A RNA-binding protein 10; 99.9 1.5E-23 5.1E-28 144.1 6.8 85 37-121 1-87 (91)
8 1whw_A Hypothetical protein ri 99.9 1.4E-22 4.6E-27 141.0 11.8 87 33-119 4-90 (99)
9 2dgo_A Cytotoxic granule-assoc 99.9 2.4E-22 8.3E-27 143.5 13.2 89 32-120 10-98 (115)
10 2e5h_A Zinc finger CCHC-type a 99.9 2.2E-22 7.5E-27 138.6 12.5 83 33-115 12-94 (94)
11 2dgs_A DAZ-associated protein 99.9 1.8E-22 6E-27 140.5 12.1 87 32-119 5-91 (99)
12 1x5u_A Splicing factor 3B subu 99.9 1.4E-22 4.7E-27 142.4 11.2 87 33-119 11-97 (105)
13 2cqc_A Arginine/serine-rich sp 99.9 2E-22 6.8E-27 139.0 11.8 84 33-116 11-94 (95)
14 2do4_A Squamous cell carcinoma 99.9 4.9E-22 1.7E-26 138.5 13.7 86 33-119 13-98 (100)
15 1x5s_A Cold-inducible RNA-bind 99.9 1.1E-22 3.9E-27 142.2 10.3 87 32-118 7-93 (102)
16 2dnm_A SRP46 splicing factor; 99.9 1.1E-22 3.9E-27 142.5 10.3 86 33-118 9-94 (103)
17 1x4c_A Splicing factor, argini 99.9 7.2E-22 2.5E-26 139.7 14.4 79 31-116 9-92 (108)
18 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.1E-22 7E-27 136.7 11.0 83 35-117 4-86 (87)
19 1x4h_A RNA-binding protein 28; 99.9 3.6E-22 1.2E-26 141.6 12.7 87 32-118 10-102 (111)
20 3md1_A Nuclear and cytoplasmic 99.9 3.2E-22 1.1E-26 134.5 11.6 82 37-118 1-82 (83)
21 2cpz_A CUG triplet repeat RNA- 99.9 3.6E-22 1.2E-26 142.7 12.4 87 33-119 21-107 (115)
22 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.9E-22 6.7E-27 136.2 10.4 82 34-115 4-85 (85)
23 3ex7_B RNA-binding protein 8A; 99.9 9.8E-23 3.3E-27 147.9 9.4 87 33-119 18-104 (126)
24 2d9p_A Polyadenylate-binding p 99.9 4.9E-22 1.7E-26 139.2 12.3 85 33-119 11-95 (103)
25 2dnz_A Probable RNA-binding pr 99.9 3.6E-22 1.2E-26 137.8 11.2 84 35-118 3-86 (95)
26 2cqd_A RNA-binding region cont 99.9 8.9E-22 3E-26 140.8 13.5 89 29-118 9-97 (116)
27 2cpe_A RNA-binding protein EWS 99.9 3.9E-22 1.3E-26 142.0 11.3 87 33-119 11-105 (113)
28 2cph_A RNA binding motif prote 99.9 5E-22 1.7E-26 140.0 11.8 88 32-119 10-99 (107)
29 2dnh_A Bruno-like 5, RNA bindi 99.9 8.7E-22 3E-26 138.3 12.5 85 34-119 12-99 (105)
30 2cq3_A RNA-binding protein 9; 99.9 1.8E-21 6.3E-26 136.3 14.1 87 32-120 10-96 (103)
31 2x1f_A MRNA 3'-END-processing 99.9 5.3E-22 1.8E-26 137.3 11.2 86 36-121 1-86 (96)
32 1x5t_A Splicing factor 3B subu 99.9 3.6E-22 1.2E-26 138.0 10.2 84 35-118 3-87 (96)
33 3ulh_A THO complex subunit 4; 99.9 6.3E-22 2.2E-26 139.5 11.5 85 30-115 22-106 (107)
34 2fy1_A RNA-binding motif prote 99.9 3.7E-22 1.3E-26 143.1 10.2 85 33-118 3-87 (116)
35 1wi8_A EIF-4B, eukaryotic tran 99.9 9.7E-22 3.3E-26 138.0 12.1 84 34-119 12-96 (104)
36 2dng_A Eukaryotic translation 99.9 1.5E-21 5.1E-26 136.8 13.1 84 33-118 11-94 (103)
37 2do0_A HnRNP M, heterogeneous 99.9 2.1E-21 7.2E-26 138.3 13.9 85 33-118 11-95 (114)
38 1p27_B RNA-binding protein 8A; 99.9 5.1E-22 1.7E-26 139.8 10.2 85 34-118 20-104 (106)
39 1oo0_B CG8781-PA, drosophila Y 99.9 7.6E-22 2.6E-26 139.8 11.1 86 33-118 22-107 (110)
40 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.2E-21 4.1E-26 147.3 12.6 85 34-118 36-120 (156)
41 2div_A TRNA selenocysteine ass 99.9 5.1E-22 1.8E-26 138.1 9.8 85 34-118 6-95 (99)
42 2kxn_B Transformer-2 protein h 99.9 3.8E-22 1.3E-26 145.7 9.5 86 33-118 42-127 (129)
43 2cpf_A RNA binding motif prote 99.9 6.5E-22 2.2E-26 137.3 10.2 84 35-118 3-89 (98)
44 3beg_B Splicing factor, argini 99.9 2.6E-22 8.8E-27 143.7 8.3 80 29-115 8-92 (115)
45 2cqp_A RNA-binding protein 12; 99.9 5.4E-22 1.8E-26 137.7 9.6 85 33-117 11-95 (98)
46 2la6_A RNA-binding protein FUS 99.9 1.2E-21 4.1E-26 136.3 11.1 83 33-115 9-99 (99)
47 1wel_A RNA-binding protein 12; 99.9 3.1E-22 1.1E-26 145.0 8.3 84 34-118 22-105 (124)
48 2dgp_A Bruno-like 4, RNA bindi 99.9 6.4E-22 2.2E-26 139.3 9.6 86 33-118 9-97 (106)
49 4a8x_A RNA-binding protein wit 99.9 8E-22 2.7E-26 133.9 9.8 83 36-118 3-86 (88)
50 2cqi_A Nucleolysin TIAR; RNA r 99.9 3.4E-21 1.2E-25 134.9 13.3 84 33-118 11-94 (103)
51 2khc_A Testis-specific RNP-typ 99.9 1.4E-21 4.7E-26 140.2 11.4 83 33-115 36-118 (118)
52 4f25_A Polyadenylate-binding p 99.9 1.2E-21 4.2E-26 140.1 10.9 81 37-119 5-85 (115)
53 3p5t_L Cleavage and polyadenyl 99.9 1.1E-22 3.8E-27 139.2 5.2 82 38-119 2-85 (90)
54 2dh8_A DAZ-associated protein 99.9 8.9E-22 3.1E-26 138.3 9.8 88 32-120 11-98 (105)
55 2ek1_A RNA-binding protein 12; 99.9 3.3E-22 1.1E-26 137.9 7.4 83 33-115 11-93 (95)
56 1u6f_A Tcubp1, RNA-binding pro 99.9 2E-21 6.9E-26 143.2 12.0 89 31-119 36-124 (139)
57 2ywk_A Putative RNA-binding pr 99.9 1.2E-21 4E-26 135.1 10.0 83 33-116 12-94 (95)
58 1x4a_A Splicing factor, argini 99.9 5.8E-21 2E-25 135.1 13.6 85 31-118 16-100 (109)
59 2dgv_A HnRNP M, heterogeneous 99.9 1.5E-21 5.3E-26 133.8 10.0 85 33-119 4-88 (92)
60 3s7r_A Heterogeneous nuclear r 99.9 4.1E-21 1.4E-25 130.3 11.8 81 33-114 7-87 (87)
61 3ns6_A Eukaryotic translation 99.9 2.1E-22 7.2E-27 140.6 5.5 83 34-116 3-92 (100)
62 2dgu_A Heterogeneous nuclear r 99.9 3.6E-21 1.2E-25 134.9 11.7 80 33-120 7-86 (103)
63 2jrs_A RNA-binding protein 39; 99.9 1.4E-21 4.7E-26 138.4 9.6 85 33-117 22-106 (108)
64 2cq4_A RNA binding motif prote 99.9 1.3E-21 4.5E-26 139.5 9.3 83 34-117 22-104 (114)
65 2dgx_A KIAA0430 protein; RRM d 99.9 3.5E-21 1.2E-25 133.3 11.2 83 34-119 6-92 (96)
66 3n9u_C Cleavage and polyadenyl 99.9 1.6E-21 5.5E-26 146.9 10.1 84 35-118 53-138 (156)
67 2kt5_A RNA and export factor-b 99.9 4.3E-21 1.5E-25 138.9 12.0 89 32-121 30-118 (124)
68 2dgw_A Probable RNA-binding pr 99.9 8E-21 2.7E-25 130.0 12.7 83 33-118 6-88 (91)
69 2cqg_A TDP-43, TAR DNA-binding 99.9 1E-20 3.6E-25 132.4 13.5 85 32-118 10-94 (103)
70 1rk8_A CG8781-PA, CG8781-PA pr 99.9 3.3E-21 1.1E-25 146.3 11.6 86 34-119 69-154 (165)
71 2dhg_A TRNA selenocysteine ass 99.9 1.2E-21 4.2E-26 137.3 8.6 85 33-118 5-91 (104)
72 2cpi_A CCR4-NOT transcription 99.9 4.3E-21 1.5E-25 136.4 11.5 85 34-118 12-102 (111)
73 3ucg_A Polyadenylate-binding p 99.9 4.1E-21 1.4E-25 130.7 10.9 80 37-117 6-85 (89)
74 1sjq_A Polypyrimidine tract-bi 99.9 1.4E-21 4.9E-26 137.1 8.7 82 34-121 13-96 (105)
75 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 6.5E-21 2.2E-25 140.3 12.1 83 32-114 58-140 (140)
76 1wg5_A Heterogeneous nuclear r 99.9 5.5E-21 1.9E-25 134.3 11.1 86 31-118 9-95 (104)
77 2cq1_A PTB-like protein L; RRM 99.9 1.4E-20 4.8E-25 131.6 13.0 82 33-120 11-94 (101)
78 2rs2_A Musashi-1, RNA-binding 99.8 6.7E-21 2.3E-25 135.0 11.2 86 33-119 21-106 (109)
79 2cpy_A RNA-binding protein 12; 99.8 3.4E-21 1.2E-25 137.5 9.7 83 33-117 11-94 (114)
80 1x4d_A Matrin 3; structural ge 99.8 4.6E-21 1.6E-25 134.2 9.7 79 34-118 12-93 (102)
81 1p1t_A Cleavage stimulation fa 99.8 9.6E-22 3.3E-26 137.8 6.2 86 34-119 5-90 (104)
82 2fc9_A NCL protein; structure 99.8 1.6E-20 5.6E-25 130.9 12.3 82 33-118 11-92 (101)
83 1wez_A HnRNP H', FTP-3, hetero 99.8 6.3E-21 2.2E-25 133.6 10.1 83 33-118 11-93 (102)
84 1why_A Hypothetical protein ri 99.8 1.2E-20 4.2E-25 130.7 11.4 80 33-118 13-94 (97)
85 2m2b_A RNA-binding protein 10; 99.8 1.4E-21 4.8E-26 142.9 6.8 85 33-118 19-109 (131)
86 2f3j_A RNA and export factor b 99.8 1.3E-20 4.3E-25 144.8 12.3 85 33-118 84-168 (177)
87 2db1_A Heterogeneous nuclear r 99.8 7.3E-21 2.5E-25 136.7 10.3 83 32-116 12-97 (118)
88 2dgt_A RNA-binding protein 30; 99.8 1.7E-20 5.7E-25 128.7 11.4 79 33-119 6-84 (92)
89 2dnq_A RNA-binding protein 4B; 99.8 7.7E-21 2.6E-25 129.9 9.7 79 33-119 4-82 (90)
90 2dis_A Unnamed protein product 99.8 7.8E-21 2.7E-25 134.3 9.9 85 35-119 6-94 (109)
91 1x4e_A RNA binding motif, sing 99.8 1.2E-21 4E-26 132.5 5.4 81 35-115 3-83 (85)
92 1x4b_A Heterogeneous nuclear r 99.8 1.1E-20 3.7E-25 135.1 10.7 83 35-118 25-107 (116)
93 1s79_A Lupus LA protein; RRM, 99.8 4.1E-21 1.4E-25 134.9 8.3 82 33-116 7-88 (103)
94 3r27_A HnRNP L, heterogeneous 99.8 1.2E-20 4.1E-25 131.2 10.4 79 34-118 18-98 (100)
95 2err_A Ataxin-2-binding protei 99.8 9.6E-21 3.3E-25 134.2 10.2 86 30-117 22-107 (109)
96 2fc8_A NCL protein; structure 99.8 2.7E-20 9.2E-25 130.0 12.3 83 33-118 11-93 (102)
97 2kn4_A Immunoglobulin G-bindin 99.8 1.6E-20 5.3E-25 141.3 11.9 86 34-119 67-152 (158)
98 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.2E-21 7.4E-26 135.4 6.6 84 33-118 15-99 (100)
99 2lea_A Serine/arginine-rich sp 99.8 2.2E-21 7.5E-26 142.7 6.9 87 33-119 43-129 (135)
100 1x5o_A RNA binding motif, sing 99.8 2.6E-20 8.9E-25 132.7 11.9 85 32-117 20-112 (114)
101 1wex_A Hypothetical protein (r 99.8 1.4E-20 4.8E-25 132.3 10.2 81 33-119 11-93 (104)
102 2ytc_A PRE-mRNA-splicing facto 99.8 2.4E-20 8.2E-25 125.9 10.8 77 33-115 8-85 (85)
103 2mss_A Protein (musashi1); RNA 99.8 3.6E-21 1.2E-25 127.1 6.4 75 39-114 1-75 (75)
104 2jwn_A Embryonic polyadenylate 99.8 1.5E-20 5.3E-25 135.8 10.2 81 36-117 35-115 (124)
105 2dnp_A RNA-binding protein 14; 99.8 2.1E-20 7.3E-25 127.7 10.4 78 34-119 6-83 (90)
106 2ad9_A Polypyrimidine tract-bi 99.8 1.4E-20 4.9E-25 135.1 9.8 83 33-121 27-111 (119)
107 2cpj_A Non-POU domain-containi 99.8 2.2E-20 7.4E-25 129.9 10.3 80 33-118 11-90 (99)
108 2hgl_A HNRPF protein, heteroge 99.8 1.1E-20 3.7E-25 139.1 9.1 85 30-116 37-124 (136)
109 2ki2_A SS-DNA binding protein 99.8 1.9E-21 6.7E-26 132.8 4.5 82 38-120 2-83 (90)
110 2e5j_A Methenyltetrahydrofolat 99.8 1.5E-20 5.2E-25 130.2 9.1 81 33-118 15-95 (97)
111 3q2s_C Cleavage and polyadenyl 99.8 7.7E-21 2.6E-25 151.7 8.5 83 36-118 67-151 (229)
112 2cpd_A Apobec-1 stimulating pr 99.8 8.2E-20 2.8E-24 126.9 12.7 78 33-118 11-90 (99)
113 2jvr_A Nucleolar protein 3; RN 99.8 1.3E-20 4.6E-25 133.9 8.7 80 34-117 25-105 (111)
114 2wbr_A GW182, gawky, LD47780P; 99.8 2.5E-20 8.6E-25 125.8 9.6 74 36-115 6-79 (89)
115 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.6E-21 1.9E-25 126.6 6.2 76 38-114 1-76 (77)
116 2nlw_A Eukaryotic translation 99.8 1.7E-20 5.9E-25 132.0 8.8 82 34-117 12-100 (105)
117 2dnn_A RNA-binding protein 12; 99.8 3.2E-20 1.1E-24 131.5 9.7 80 34-116 13-92 (109)
118 2a3j_A U1 small nuclear ribonu 99.8 2.7E-20 9.2E-25 135.4 9.3 83 33-118 25-111 (127)
119 2xnq_A Nuclear polyadenylated 99.8 9E-20 3.1E-24 126.5 11.0 77 33-117 18-95 (97)
120 2jvo_A Nucleolar protein 3; nu 99.8 4.6E-20 1.6E-24 130.5 9.6 79 33-119 27-105 (108)
121 1x4g_A Nucleolysin TIAR; struc 99.8 6.1E-20 2.1E-24 129.9 10.1 79 34-118 22-100 (109)
122 1nu4_A U1A RNA binding domain; 99.8 1.4E-20 4.7E-25 130.2 6.6 84 33-119 4-91 (97)
123 2cpx_A Hypothetical protein FL 99.8 4.9E-21 1.7E-25 136.6 4.4 82 34-119 22-107 (115)
124 1fj7_A Nucleolin RBD1, protein 99.8 3.3E-21 1.1E-25 134.5 3.4 84 34-119 14-97 (101)
125 2lmi_A GRSF-1, G-rich sequence 99.8 1.2E-20 4E-25 133.3 6.2 83 32-116 6-91 (107)
126 2cqh_A IGF-II mRNA-binding pro 99.8 4.3E-20 1.5E-24 126.9 8.6 79 33-118 4-84 (93)
127 2e5g_A U6 snRNA-specific termi 99.8 8.9E-20 3E-24 125.6 10.0 80 33-118 4-83 (94)
128 2e44_A Insulin-like growth fac 99.8 7.7E-20 2.6E-24 126.2 9.3 82 33-118 11-93 (96)
129 1x4f_A Matrin 3; structural ge 99.8 2.8E-20 9.7E-25 132.1 7.0 79 34-118 22-103 (112)
130 2kvi_A Nuclear polyadenylated 99.8 4.3E-20 1.5E-24 127.7 7.7 77 34-118 7-84 (96)
131 2la4_A Nuclear and cytoplasmic 99.8 6.8E-20 2.3E-24 127.8 8.3 76 35-116 25-100 (101)
132 1fjc_A Nucleolin RBD2, protein 99.8 7E-20 2.4E-24 126.5 8.3 81 33-118 12-92 (96)
133 2krb_A Eukaryotic translation 99.8 3.5E-20 1.2E-24 124.2 6.2 73 37-111 1-80 (81)
134 2hvz_A Splicing factor, argini 99.8 3.9E-20 1.3E-24 129.0 6.5 76 38-118 1-76 (101)
135 1iqt_A AUF1, heterogeneous nuc 99.8 2.2E-20 7.5E-25 123.1 4.7 75 39-114 1-75 (75)
136 2lcw_A RNA-binding protein FUS 99.7 2.7E-21 9.2E-26 138.4 0.0 85 34-118 4-96 (116)
137 1whx_A Hypothetical protein ri 99.8 1.1E-19 3.8E-24 129.1 8.4 77 36-118 9-85 (111)
138 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-19 5.7E-24 128.7 9.2 81 34-117 5-85 (115)
139 4f02_A Polyadenylate-binding p 99.8 3.3E-19 1.1E-23 140.4 11.7 84 34-117 12-95 (213)
140 2dha_A FLJ20171 protein; RRM d 99.8 1E-19 3.5E-24 131.6 7.9 80 35-116 21-104 (123)
141 1x5p_A Negative elongation fac 99.8 1.1E-18 3.8E-23 120.7 12.7 78 34-119 12-89 (97)
142 3egn_A RNA-binding protein 40; 99.8 4.3E-20 1.5E-24 136.8 5.8 87 34-120 42-133 (143)
143 1wf1_A RNA-binding protein RAL 99.8 2.3E-19 7.8E-24 127.1 9.2 75 35-117 25-100 (110)
144 2hgn_A Heterogeneous nuclear r 99.8 3.3E-20 1.1E-24 137.0 4.6 83 34-119 43-125 (139)
145 2cq2_A Hypothetical protein LO 99.8 2E-19 6.7E-24 128.0 8.3 79 34-118 22-107 (114)
146 2xs2_A Deleted in azoospermia- 99.8 1.1E-19 3.7E-24 127.0 6.8 82 34-118 6-87 (102)
147 2j8a_A Histone-lysine N-methyl 99.8 2.7E-19 9.1E-24 128.7 8.6 80 37-116 2-95 (136)
148 2hgm_A HNRPF protein, heteroge 99.8 1.6E-19 5.4E-24 131.0 7.5 81 33-116 38-120 (126)
149 3md3_A Nuclear and cytoplasmic 99.8 9E-19 3.1E-23 131.4 11.8 83 33-115 83-165 (166)
150 1fxl_A Paraneoplastic encephal 99.8 1.1E-18 3.7E-23 131.1 11.7 82 37-118 2-83 (167)
151 1wg1_A KIAA1579 protein, homol 99.8 7.6E-19 2.6E-23 119.5 9.5 76 36-118 4-79 (88)
152 1b7f_A Protein (SXL-lethal pro 99.8 7.5E-19 2.6E-23 132.4 10.3 83 36-118 2-84 (168)
153 3zzy_A Polypyrimidine tract-bi 99.8 1.4E-18 4.6E-23 126.4 11.1 77 37-118 28-107 (130)
154 2i2y_A Fusion protein consists 99.8 6.1E-19 2.1E-23 131.6 9.5 81 33-118 69-149 (150)
155 2dnl_A Cytoplasmic polyadenyla 99.8 7.4E-19 2.5E-23 125.3 9.4 80 33-115 4-86 (114)
156 2qfj_A FBP-interacting repress 99.8 1.3E-18 4.5E-23 136.3 11.2 84 35-118 123-206 (216)
157 2diu_A KIAA0430 protein; struc 99.8 6E-19 2.1E-23 120.2 7.9 76 34-119 5-86 (96)
158 2yh0_A Splicing factor U2AF 65 99.8 2.9E-18 9.8E-23 132.6 12.0 85 34-118 111-195 (198)
159 2e5i_A Heterogeneous nuclear r 99.8 2.6E-18 8.8E-23 124.2 10.8 74 39-118 27-103 (124)
160 2g4b_A Splicing factor U2AF 65 99.8 2.4E-18 8.3E-23 130.1 10.8 81 35-115 92-172 (172)
161 3d2w_A TAR DNA-binding protein 99.8 2.9E-18 9.9E-23 117.0 10.1 77 33-118 7-85 (89)
162 1sjr_A Polypyrimidine tract-bi 99.8 1.4E-18 4.9E-23 130.8 8.7 79 36-118 45-125 (164)
163 1l3k_A Heterogeneous nuclear r 99.8 3E-18 1E-22 132.3 10.8 85 33-118 9-93 (196)
164 3tyt_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 133.7 11.0 78 36-118 3-81 (205)
165 1l3k_A Heterogeneous nuclear r 99.8 5.1E-18 1.7E-22 131.0 11.4 84 35-119 102-185 (196)
166 2cjk_A Nuclear polyadenylated 99.8 1.5E-18 5.2E-23 130.7 7.7 81 36-117 86-166 (167)
167 4f02_A Polyadenylate-binding p 99.7 4.6E-18 1.6E-22 133.8 10.1 80 36-117 102-181 (213)
168 2hzc_A Splicing factor U2AF 65 99.7 4.2E-18 1.5E-22 115.2 8.1 73 34-113 3-86 (87)
169 1wf0_A TDP-43, TAR DNA-binding 99.7 4.1E-18 1.4E-22 115.8 7.6 77 35-118 3-79 (88)
170 2bz2_A Negative elongation fac 99.7 5.9E-18 2E-22 122.0 8.9 77 34-118 36-112 (121)
171 1b7f_A Protein (SXL-lethal pro 99.7 1.2E-17 4.2E-22 125.7 11.0 81 34-114 86-168 (168)
172 2pe8_A Splicing factor 45; RRM 99.7 1.7E-17 5.9E-22 116.6 11.0 82 35-116 6-93 (105)
173 2qfj_A FBP-interacting repress 99.7 5.8E-18 2E-22 132.6 9.0 83 36-118 27-109 (216)
174 3md3_A Nuclear and cytoplasmic 99.7 1.4E-17 4.9E-22 124.8 10.7 80 38-118 1-80 (166)
175 1fxl_A Paraneoplastic encephal 99.7 1.9E-17 6.5E-22 124.2 9.8 80 35-114 86-167 (167)
176 3pgw_A U1-A; protein-RNA compl 99.7 4E-17 1.4E-21 133.2 11.9 84 32-118 4-91 (282)
177 3u1l_A PRE-mRNA-splicing facto 99.7 9.6E-18 3.3E-22 134.0 7.5 81 33-119 130-231 (240)
178 3nmr_A Cugbp ELAV-like family 99.7 2.9E-17 9.9E-22 124.3 9.3 80 35-115 93-175 (175)
179 1fje_B Nucleolin RBD12, protei 99.7 3.3E-17 1.1E-21 124.4 9.5 79 34-117 96-174 (175)
180 3nmr_A Cugbp ELAV-like family 99.7 3.8E-17 1.3E-21 123.6 9.6 83 36-118 2-89 (175)
181 2voo_A Lupus LA protein; RNA-b 99.7 7.5E-17 2.6E-21 125.3 11.0 78 37-116 109-186 (193)
182 2cjk_A Nuclear polyadenylated 99.7 2.7E-17 9.1E-22 123.8 8.1 79 36-116 2-80 (167)
183 2ghp_A U4/U6 snRNA-associated 99.7 7.1E-17 2.4E-21 132.4 11.0 83 34-117 207-291 (292)
184 2dit_A HIV TAT specific factor 99.7 3.4E-16 1.2E-20 111.1 11.8 81 34-118 12-103 (112)
185 3pgw_A U1-A; protein-RNA compl 99.7 1.3E-16 4.3E-21 130.3 10.8 76 35-115 205-281 (282)
186 2adc_A Polypyrimidine tract-bi 99.7 4.8E-17 1.6E-21 129.3 7.8 79 34-117 31-110 (229)
187 3smz_A Protein raver-1, ribonu 99.7 2.3E-16 7.7E-21 128.9 11.9 83 36-118 94-176 (284)
188 3smz_A Protein raver-1, ribonu 99.7 1.8E-16 6.2E-21 129.5 11.1 86 34-120 181-267 (284)
189 1fje_B Nucleolin RBD12, protei 99.7 2.3E-17 8E-22 125.2 3.7 85 32-118 8-92 (175)
190 1qm9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.9E-21 123.9 6.7 77 37-118 3-80 (198)
191 3tyt_A Heterogeneous nuclear r 99.6 2.7E-16 9.2E-21 123.3 8.2 78 35-114 121-204 (205)
192 3sde_A Paraspeckle component 1 99.6 7.1E-16 2.4E-20 124.9 10.8 77 34-116 19-95 (261)
193 1qm9_A Polypyrimidine tract-bi 99.6 2.4E-16 8.2E-21 122.1 7.3 78 35-117 118-197 (198)
194 3v4m_A Splicing factor U2AF 65 99.6 6.9E-16 2.4E-20 108.4 8.9 82 35-116 3-96 (105)
195 2adc_A Polypyrimidine tract-bi 99.6 4.6E-16 1.6E-20 123.6 8.9 78 35-117 149-228 (229)
196 3ue2_A Poly(U)-binding-splicin 99.6 1.3E-15 4.5E-20 109.1 9.3 81 36-116 19-108 (118)
197 1jmt_A Splicing factor U2AF 35 99.6 1.7E-16 5.8E-21 111.4 4.3 72 42-114 20-103 (104)
198 2ghp_A U4/U6 snRNA-associated 99.6 1.1E-15 3.8E-20 125.2 9.3 82 36-118 116-198 (292)
199 3sde_A Paraspeckle component 1 99.6 2E-15 6.8E-20 122.2 9.7 81 36-117 95-179 (261)
200 2g4b_A Splicing factor U2AF 65 99.6 1.8E-15 6.2E-20 114.2 8.8 75 36-117 3-88 (172)
201 2yh0_A Splicing factor U2AF 65 99.6 2.5E-15 8.5E-20 116.0 9.5 76 36-118 3-89 (198)
202 3tht_A Alkylated DNA repair pr 99.6 4.1E-15 1.4E-19 124.6 9.1 76 34-115 15-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.6 4.1E-14 1.4E-18 98.4 10.6 76 37-119 10-92 (100)
204 3s6e_A RNA-binding protein 39; 99.5 7.6E-14 2.6E-18 99.3 10.3 78 35-116 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 5.6E-13 1.9E-17 95.3 10.0 82 29-116 10-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 1.4E-12 4.7E-17 88.0 9.2 76 36-120 6-89 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 1.3E-11 4.6E-16 83.6 5.0 72 35-115 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 1.1E-10 3.7E-15 92.0 8.1 80 37-116 124-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 5.4E-09 1.9E-13 72.3 8.5 74 35-114 19-97 (117)
210 1wey_A Calcipressin 1; structu 98.6 2.4E-07 8.1E-12 63.7 7.5 79 34-118 2-85 (104)
211 1uw4_A UPF3X; nonsense mediate 98.3 9.3E-06 3.2E-10 54.7 10.4 79 38-116 2-87 (91)
212 2dhx_A Poly (ADP-ribose) polym 98.3 1E-05 3.5E-10 55.4 10.2 74 34-116 5-83 (104)
213 2l08_A Regulator of nonsense t 98.0 2.6E-05 9E-10 52.9 7.9 80 36-115 8-94 (97)
214 1whv_A Poly(A)-specific ribonu 98.0 2.5E-05 8.5E-10 52.9 7.7 56 36-100 15-70 (100)
215 1wwh_A Nucleoporin 35, nucleop 98.0 2.8E-05 9.5E-10 54.8 7.8 73 34-114 21-94 (119)
216 3ctr_A Poly(A)-specific ribonu 97.8 3.4E-05 1.1E-09 52.4 5.2 54 38-100 7-60 (101)
217 3p3d_A Nucleoporin 53; structu 97.6 9.4E-05 3.2E-09 52.8 5.2 79 35-115 5-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 96.7 0.00083 2.9E-08 58.1 3.4 55 37-97 53-107 (464)
219 2i2y_A Fusion protein consists 96.5 0.00079 2.7E-08 49.1 1.5 41 75-116 9-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.4 0.0022 7.5E-08 46.9 3.7 34 67-102 3-36 (158)
221 3d45_A Poly(A)-specific ribonu 94.6 0.094 3.2E-06 45.9 7.7 56 37-101 440-495 (507)
222 2g0c_A ATP-dependent RNA helic 94.4 0.049 1.7E-06 34.7 4.1 68 39-115 2-75 (76)
223 4eyt_A Telomerase associated p 93.5 0.4 1.4E-05 31.7 7.1 70 35-112 10-86 (129)
224 3pgw_S U1-70K; protein-RNA com 83.4 2.7 9.1E-05 35.9 6.7 6 90-95 117-122 (437)
225 4e8u_A Putative uncharacterize 78.5 6.3 0.00021 29.2 6.4 49 37-88 12-71 (172)
226 3lpe_A Putative transcription 76.0 7.5 0.00025 25.5 5.7 35 63-102 39-73 (92)
227 3fry_A Probable copper-exporti 73.9 11 0.00037 22.7 5.8 55 37-98 6-60 (73)
228 4f25_A Polyadenylate-binding p 71.4 0.82 2.8E-05 31.1 0.0 20 34-53 94-113 (115)
229 3ts2_A Protein LIN-28 homolog 70.3 0.97 3.3E-05 32.7 0.2 28 52-87 2-29 (148)
230 3j21_T 50S ribosomal protein L 60.9 25 0.00085 22.8 5.6 57 39-98 24-82 (86)
231 2exu_A Transcription initiatio 58.5 22 0.00076 26.9 5.8 27 78-104 148-174 (200)
232 3dxs_X Copper-transporting ATP 54.9 30 0.001 20.4 5.6 55 39-99 5-63 (74)
233 3h7h_B Transcription elongatio 54.8 24 0.00081 23.8 4.9 35 63-102 40-74 (106)
234 4a4j_A Pacszia, cation-transpo 51.6 20 0.0007 20.8 3.9 55 38-98 4-61 (69)
235 2lfv_A Protein DAMX; cell divi 55.5 3.4 0.00012 28.1 0.0 60 48-108 33-93 (106)
236 3uzu_A Ribosomal RNA small sub 48.7 7.2 0.00025 31.0 1.7 33 38-70 115-147 (279)
237 3fut_A Dimethyladenosine trans 47.2 15 0.00052 29.0 3.4 32 37-69 110-141 (271)
238 4a17_R RPL23A, 60S ribosomal p 46.4 34 0.0012 24.6 4.8 57 39-98 88-146 (150)
239 4bby_A Alkyldihydroxyacetoneph 45.5 18 0.00061 32.4 4.0 54 45-99 351-408 (658)
240 1vq8_S 50S ribosomal protein L 45.3 41 0.0014 21.7 4.7 55 39-96 23-79 (85)
241 2cfx_A HTH-type transcriptiona 45.3 73 0.0025 21.9 7.7 47 51-101 78-124 (144)
242 1yg0_A COP associated protein; 44.8 40 0.0014 18.8 5.4 55 39-99 4-61 (66)
243 3u5e_X 60S ribosomal protein L 44.1 40 0.0014 24.0 4.9 57 39-98 80-138 (142)
244 2g9o_A Copper-transporting ATP 43.3 33 0.0011 21.5 4.1 56 38-99 5-64 (90)
245 1vd2_A Protein kinase C, IOTA 42.9 39 0.0013 22.0 4.3 53 40-99 17-74 (89)
246 1qyr_A KSGA, high level kasuga 42.5 19 0.00064 28.0 3.3 30 38-67 91-120 (252)
247 3swz_A Steroid 17-alpha-hydrox 42.5 35 0.0012 28.6 5.2 51 39-98 16-70 (494)
248 2npt_B Mitogen-activated prote 40.9 33 0.0011 22.6 3.7 50 44-101 35-85 (100)
249 2xmw_A PACS-N, cation-transpor 40.5 49 0.0017 18.7 5.8 55 39-99 6-63 (71)
250 2cu1_A Mitogen-activated prote 39.4 15 0.00053 24.5 1.9 51 44-102 23-74 (103)
251 3lo3_A Uncharacterized conserv 39.3 53 0.0018 21.3 4.6 19 78-96 52-70 (94)
252 2kt2_A Mercuric reductase; nme 39.2 52 0.0018 18.6 6.3 55 38-98 2-59 (69)
253 1i4w_A Mitochondrial replicati 38.9 19 0.00065 29.7 2.9 22 39-60 144-165 (353)
254 3iz5_X 60S ribosomal protein L 38.8 39 0.0013 24.3 4.1 56 40-98 91-148 (152)
255 1xn9_A 30S ribosomal protein S 38.1 80 0.0028 21.0 5.4 48 47-95 28-80 (101)
256 1q8l_A Copper-transporting ATP 37.7 67 0.0023 19.3 6.8 57 37-99 10-70 (84)
257 2jrh_A Mitogen-activated prote 37.3 37 0.0013 22.1 3.4 63 44-115 19-82 (94)
258 1wj6_A KIAA0049 protein, RSGI 37.2 53 0.0018 21.9 4.3 62 46-115 33-94 (101)
259 1cpz_A Protein (COPZ); copper 37.1 55 0.0019 18.2 7.1 54 39-98 3-60 (68)
260 2l3m_A Copper-ION-binding prot 36.9 58 0.002 18.4 5.7 55 39-99 8-66 (71)
261 2e5p_A Protein PHF1, PHD finge 36.5 16 0.00054 22.4 1.5 10 79-88 37-46 (68)
262 2v94_A RPS24, 30S ribosomal pr 36.0 92 0.0031 20.9 5.4 46 48-94 38-88 (107)
263 3ftd_A Dimethyladenosine trans 35.9 19 0.00066 27.8 2.4 28 38-65 96-123 (249)
264 1p6t_A Potential copper-transp 35.9 1E+02 0.0034 20.8 6.1 27 40-66 78-104 (151)
265 1aw0_A Menkes copper-transport 35.5 54 0.0019 18.6 4.0 55 39-99 6-64 (72)
266 3tqs_A Ribosomal RNA small sub 35.1 10 0.00035 29.7 0.6 32 39-70 98-129 (255)
267 1y3j_A Copper-transporting ATP 34.6 64 0.0022 18.8 4.3 55 39-99 6-64 (77)
268 2e1c_A Putative HTH-type trans 34.3 1.2E+02 0.004 21.8 6.3 51 44-99 94-144 (171)
269 2w7a_A LINE-1 ORF1P; RNA-bindi 34.2 1E+02 0.0035 20.4 5.4 75 38-112 4-98 (100)
270 2lea_A Serine/arginine-rich sp 34.2 8.5 0.00029 26.8 0.0 27 80-106 5-31 (135)
271 3p8b_B Transcription antitermi 34.0 52 0.0018 23.3 4.3 34 64-102 33-66 (152)
272 2c60_A Human mitogen-activated 33.8 37 0.0013 22.7 3.0 50 44-101 46-96 (111)
273 3cjk_B Copper-transporting ATP 33.1 72 0.0024 18.3 5.7 55 39-99 5-63 (75)
274 1ywx_A 30S ribosomal protein S 33.1 92 0.0031 20.7 5.0 47 47-94 28-79 (102)
275 2e7g_A Putative ribosome-bindi 33.0 97 0.0033 21.3 5.4 35 61-99 43-78 (129)
276 1osd_A MERP, hypothetical prot 33.0 69 0.0024 18.1 6.3 55 39-99 6-64 (72)
277 2ofg_X Zinc-transporting ATPas 32.9 1E+02 0.0035 20.0 7.0 56 38-99 10-69 (111)
278 2cs4_A Protein C12ORF2; GTP bi 31.6 20 0.00069 23.7 1.5 22 42-63 21-43 (95)
279 1i1g_A Transcriptional regulat 31.6 1E+02 0.0035 20.8 5.5 48 50-101 76-124 (141)
280 2lsl_A Telomerase associated p 37.8 10 0.00034 25.2 0.0 24 78-101 76-99 (137)
281 1mli_A Muconolactone isomerase 31.5 1.1E+02 0.0038 20.1 7.4 57 43-103 9-75 (96)
282 1yjr_A Copper-transporting ATP 31.5 75 0.0026 18.1 6.8 46 37-88 5-50 (75)
283 2cg4_A Regulatory protein ASNC 31.1 1.3E+02 0.0045 20.7 6.7 53 44-100 75-128 (152)
284 3fjv_A Uncharacterized novel p 30.7 59 0.002 24.4 4.1 57 49-112 65-128 (194)
285 1kvi_A Copper-transporting ATP 30.6 83 0.0028 18.3 6.3 56 38-99 10-69 (79)
286 2m0o_A PHD finger protein 1; t 30.4 23 0.00077 22.4 1.5 19 62-88 45-63 (79)
287 2yko_A LINE-1 ORF1P; RNA-bindi 30.1 1.6E+02 0.0054 22.7 6.5 78 37-114 52-149 (233)
288 3e6i_A CYPIIE1, P450-J, cytoch 29.9 35 0.0012 28.3 3.1 49 41-98 20-71 (476)
289 3ced_A Methionine import ATP-b 29.6 62 0.0021 21.1 3.8 54 48-101 31-87 (98)
290 2ew9_A Copper-transporting ATP 28.9 91 0.0031 20.9 4.8 54 39-98 83-140 (149)
291 2d8m_A DNA-repair protein XRCC 28.8 55 0.0019 22.4 3.5 28 36-64 24-51 (129)
292 1fvq_A Copper-transporting ATP 28.8 83 0.0028 17.7 4.7 55 39-99 5-62 (72)
293 1wvf_A 4-cresol dehydrogenase 28.7 41 0.0014 29.0 3.5 42 54-96 218-261 (520)
294 2crl_A Copper chaperone for su 28.5 1.2E+02 0.004 19.3 5.3 54 39-99 22-76 (98)
295 1q4r_A Protein AT3G17210; cent 28.2 1.3E+02 0.0044 19.8 5.9 56 39-94 13-79 (112)
296 3i4p_A Transcriptional regulat 28.2 1.6E+02 0.0053 20.7 6.1 57 39-99 64-123 (162)
297 1mwy_A ZNTA; open-faced beta-s 28.0 89 0.0031 17.9 7.2 55 39-99 6-62 (73)
298 2uuu_A Alkyldihydroxyacetoneph 27.9 41 0.0014 29.7 3.3 48 52-100 288-339 (584)
299 1x60_A Sporulation-specific N- 27.3 60 0.0021 19.8 3.2 63 37-104 9-71 (79)
300 2cyy_A Putative HTH-type trans 26.7 1.6E+02 0.0054 20.3 7.2 52 44-100 74-125 (151)
301 2xzm_P RPS24E; ribosome, trans 26.6 1.4E+02 0.0047 21.4 5.3 46 48-94 32-82 (149)
302 3dhx_A Methionine import ATP-b 26.6 47 0.0016 22.0 2.7 54 48-101 32-87 (106)
303 2okq_A Hypothetical protein YB 26.0 1.4E+02 0.0047 21.1 5.1 44 54-97 50-108 (141)
304 3tbg_A Cytochrome P450 2D6; mo 25.9 31 0.001 28.6 2.1 47 41-96 20-69 (479)
305 2eqj_A Metal-response element- 25.6 31 0.0011 21.1 1.5 10 79-88 41-50 (66)
306 2ns6_A Mobilization protein A; 25.0 1.7E+02 0.0056 21.6 5.8 49 38-89 71-127 (185)
307 2kyz_A Heavy metal binding pro 24.6 53 0.0018 18.6 2.5 53 39-98 4-56 (67)
308 3pm9_A Putative oxidoreductase 24.6 70 0.0024 27.4 4.1 52 47-99 196-251 (476)
309 1opz_A Potential copper-transp 24.2 1E+02 0.0036 17.4 7.1 56 38-99 8-67 (76)
310 3pm0_A Cypib1, cytochrome P450 24.2 88 0.003 26.0 4.7 49 40-97 18-68 (507)
311 2qif_A Copper chaperone COPZ; 23.6 98 0.0034 16.8 5.8 54 39-98 5-62 (69)
312 2e5q_A PHD finger protein 19; 23.0 15 0.0005 22.3 -0.4 10 79-88 35-44 (63)
313 2rf4_B DNA-directed RNA polyme 22.8 42 0.0014 21.7 1.8 28 34-61 16-43 (87)
314 3u5c_Y RP50, 40S ribosomal pro 22.8 2E+02 0.0069 20.1 6.2 46 48-94 34-84 (135)
315 2djw_A Probable transcriptiona 22.7 1.5E+02 0.005 18.5 4.7 42 51-96 15-56 (92)
316 2k2p_A Uncharacterized protein 22.6 46 0.0016 20.7 2.0 56 38-99 24-80 (85)
317 2bkf_A Zinc-finger protein NBR 22.5 1.2E+02 0.0042 19.5 4.0 60 46-113 25-84 (87)
318 3rgo_A Protein-tyrosine phosph 22.5 1E+02 0.0035 21.1 4.1 23 37-62 6-28 (157)
319 2qrr_A Methionine import ATP-b 22.2 1.6E+02 0.0056 18.9 5.4 63 39-101 25-89 (101)
320 3bsu_A Ribonuclease H1, RNAse 22.2 1.2E+02 0.0041 17.4 3.7 20 79-98 31-50 (53)
321 2pn6_A ST1022, 150AA long hypo 21.8 2E+02 0.0067 19.6 6.1 48 50-101 77-125 (150)
322 2g1d_A 30S ribosomal protein S 21.6 82 0.0028 20.8 3.1 45 48-93 30-79 (98)
323 1ytr_A Bacteriocin plantaricin 21.3 48 0.0017 15.7 1.3 12 51-62 14-25 (26)
324 4hhu_A OR280; engineered prote 21.1 1.5E+02 0.0051 20.3 4.4 71 39-114 44-129 (170)
325 3emu_A Leucine rich repeat and 21.0 90 0.0031 22.0 3.5 18 39-56 16-33 (161)
326 2i9x_A Putative septation prot 20.9 1.3E+02 0.0045 19.3 3.9 26 63-88 5-30 (87)
327 2zbc_A 83AA long hypothetical 20.9 1.5E+02 0.005 17.8 7.2 44 50-97 14-57 (83)
328 3mfb_A Uncharacterized protein 20.6 1.4E+02 0.0048 21.5 4.4 37 49-85 3-42 (157)
329 2cvi_A 75AA long hypothetical 20.5 1.6E+02 0.0053 18.0 7.1 44 50-97 14-57 (83)
330 2dbb_A Putative HTH-type trans 20.2 2.1E+02 0.0073 19.5 6.4 46 51-100 82-129 (151)
331 1cqm_A Ribosomal protein S6; a 20.0 1.5E+02 0.0051 19.3 4.2 51 45-96 10-75 (101)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=150.59 Aligned_cols=82 Identities=29% Similarity=0.509 Sum_probs=78.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
-++++|||+|||+++|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 028447 115 EE 116 (209)
Q Consensus 115 ~~ 116 (209)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=3.7e-23 Score=179.30 Aligned_cols=85 Identities=28% Similarity=0.450 Sum_probs=80.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
++.++|||+|||+.||+++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.|||++|+|+.|.|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 028447 115 EENRK 119 (209)
Q Consensus 115 ~~~~~ 119 (209)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86554
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=4.2e-23 Score=146.75 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
..+.++|||+||++++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8644
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=8.9e-23 Score=143.01 Aligned_cols=87 Identities=33% Similarity=0.506 Sum_probs=82.2
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
.+.++.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 35677899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeccCC
Q 028447 112 VFAEENR 118 (209)
Q Consensus 112 ~~a~~~~ 118 (209)
+++.++.
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998654
No 5
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=8.5e-23 Score=142.79 Aligned_cols=87 Identities=33% Similarity=0.457 Sum_probs=82.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+..++|||+|||+.+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987654
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=143.19 Aligned_cols=87 Identities=22% Similarity=0.370 Sum_probs=79.9
Q ss_pred CCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCc--eEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc----e
Q 028447 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR--LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----L 103 (209)
Q Consensus 30 ~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~----~ 103 (209)
|........+|||+|||+++|+++|.++|++||. |..|.|+.|+.+|.++|||||+|.+.++|++||+.|||. .
T Consensus 2 g~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 2 GHHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp CCCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CcccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 3456677899999999999999999999999995 678999999999999999999999999999999999996 5
Q ss_pred ecCeEEEEEEecc
Q 028447 104 LLGRELTVVFAEE 116 (209)
Q Consensus 104 i~g~~i~V~~a~~ 116 (209)
|+|++|.|+||+.
T Consensus 82 i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 82 IDGKTIGVDFAKS 94 (95)
T ss_dssp ETTEEEEEEECCC
T ss_pred ECCEEEEEEEccC
Confidence 9999999999874
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=144.11 Aligned_cols=85 Identities=22% Similarity=0.460 Sum_probs=78.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC-CceecCeEEEEEEe
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD-GYLLLGRELTVVFA 114 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~i~g~~i~V~~a 114 (209)
+++|||+|||+++|+++|.++|++|| +|..|.|+.++.+|.++|||||+|.+.++|++||+.|+ +..|+|+.|.|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999998875 56799999999999
Q ss_pred ccCCCCC
Q 028447 115 EENRKKP 121 (209)
Q Consensus 115 ~~~~~~~ 121 (209)
.++....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 8766443
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.4e-22 Score=141.01 Aligned_cols=87 Identities=33% Similarity=0.552 Sum_probs=81.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
++.++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987653
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=2.4e-22 Score=143.50 Aligned_cols=89 Identities=28% Similarity=0.531 Sum_probs=82.9
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
.+....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 028447 112 VFAEENRKK 120 (209)
Q Consensus 112 ~~a~~~~~~ 120 (209)
+|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=138.57 Aligned_cols=83 Identities=20% Similarity=0.371 Sum_probs=79.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred Eec
Q 028447 113 FAE 115 (209)
Q Consensus 113 ~a~ 115 (209)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=140.50 Aligned_cols=87 Identities=25% Similarity=0.467 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
......++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345678999999999999999999999999999999999999899999999999999999999998 9999999999999
Q ss_pred EEeccCCC
Q 028447 112 VFAEENRK 119 (209)
Q Consensus 112 ~~a~~~~~ 119 (209)
+++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99986654
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.4e-22 Score=142.44 Aligned_cols=87 Identities=29% Similarity=0.404 Sum_probs=82.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+.+..++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9986553
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2e-22 Score=138.99 Aligned_cols=84 Identities=30% Similarity=0.398 Sum_probs=79.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred Eecc
Q 028447 113 FAEE 116 (209)
Q Consensus 113 ~a~~ 116 (209)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9863
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=138.46 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=80.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+++++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34667899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987553
No 15
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-22 Score=142.17 Aligned_cols=87 Identities=29% Similarity=0.450 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
...+..++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeccCC
Q 028447 112 VFAEENR 118 (209)
Q Consensus 112 ~~a~~~~ 118 (209)
+++.++.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9998654
No 16
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=142.46 Aligned_cols=86 Identities=44% Similarity=0.661 Sum_probs=81.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..++.++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
+++...
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998654
No 17
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=7.2e-22 Score=139.72 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC----
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG---- 106 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g---- 106 (209)
.+.....++|||+|||+++++++|+++|.+||+|..|.|+.+ |||||+|.+.++|++||+.||+..|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 344567899999999999999999999999999999999865 899999999999999999999999999
Q ss_pred -eEEEEEEecc
Q 028447 107 -RELTVVFAEE 116 (209)
Q Consensus 107 -~~i~V~~a~~ 116 (209)
+.|.|++|.+
T Consensus 82 ~~~i~V~~a~~ 92 (108)
T 1x4c_A 82 TAYIRVKVDGP 92 (108)
T ss_dssp EEEEEEEESSC
T ss_pred ceEEEEEeCCC
Confidence 9999999975
No 18
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=136.68 Aligned_cols=83 Identities=28% Similarity=0.521 Sum_probs=77.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
+..++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccC
Q 028447 115 EEN 117 (209)
Q Consensus 115 ~~~ 117 (209)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.6e-22 Score=141.57 Aligned_cols=87 Identities=26% Similarity=0.340 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC------Cceec
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD------GYLLL 105 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~------g~~i~ 105 (209)
...++.++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 355778999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CeEEEEEEeccCC
Q 028447 106 GRELTVVFAEENR 118 (209)
Q Consensus 106 g~~i~V~~a~~~~ 118 (209)
|+.|.|+++.++.
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999998654
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=3.2e-22 Score=134.55 Aligned_cols=82 Identities=32% Similarity=0.457 Sum_probs=78.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.++|||+|||+++++++|+++|.+||.|..+.|+.++.++.++|||||+|.+.++|+.|++.|||..|+|+.|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q 028447 117 NR 118 (209)
Q Consensus 117 ~~ 118 (209)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 21
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=3.6e-22 Score=142.70 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=81.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+..++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
|++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9986543
No 22
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=1.9e-22 Score=136.21 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=78.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|+.|++.|||..|+|+.|.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 028447 114 AE 115 (209)
Q Consensus 114 a~ 115 (209)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 23
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=9.8e-23 Score=147.86 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=81.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557799999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
|+.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9986553
No 24
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=139.21 Aligned_cols=85 Identities=29% Similarity=0.516 Sum_probs=79.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++..+|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567899999999999999999999999999999999987 88899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9986553
No 25
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.6e-22 Score=137.77 Aligned_cols=84 Identities=31% Similarity=0.542 Sum_probs=80.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7654
No 26
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8.9e-22 Score=140.84 Aligned_cols=89 Identities=28% Similarity=0.372 Sum_probs=81.8
Q ss_pred CCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 29 ~~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
.........++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++ .|+|+.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3344567789999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred EEEEEeccCC
Q 028447 109 LTVVFAEENR 118 (209)
Q Consensus 109 i~V~~a~~~~ 118 (209)
|.|+++....
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 9999997543
No 27
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.9e-22 Score=142.03 Aligned_cols=87 Identities=30% Similarity=0.371 Sum_probs=81.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceE--------EEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK--------DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
+....++|||+|||+++++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 028447 105 LGRELTVVFAEENRK 119 (209)
Q Consensus 105 ~g~~i~V~~a~~~~~ 119 (209)
+|+.|.|+++.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999986543
No 28
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=5e-22 Score=139.95 Aligned_cols=88 Identities=33% Similarity=0.585 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecC-CCCCCcceEEEEEecCHHHHHHHHHhh-CCceecCeEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRD-YYTGEPRGFGFVQYIDPADAADAKYHM-DGYLLLGREL 109 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~i 109 (209)
......++|||+|||+.+++++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|++||+.| |+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34667899999999999999999999999999999999998 789999999999999999999999999 9999999999
Q ss_pred EEEEeccCCC
Q 028447 110 TVVFAEENRK 119 (209)
Q Consensus 110 ~V~~a~~~~~ 119 (209)
.|+|+.++..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999986543
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=8.7e-22 Score=138.32 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=79.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC---eEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG---RELT 110 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g---~~i~ 110 (209)
..+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4568999999999999999999999999999999999987 78999999999999999999999999999998 9999
Q ss_pred EEEeccCCC
Q 028447 111 VVFAEENRK 119 (209)
Q Consensus 111 V~~a~~~~~ 119 (209)
|+++..+..
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999987653
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=136.26 Aligned_cols=87 Identities=32% Similarity=0.528 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
......++|||+|||+++++++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999999999999999999999999999998753 37899999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 028447 112 VFAEENRKK 120 (209)
Q Consensus 112 ~~a~~~~~~ 120 (209)
+++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999876543
No 31
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=5.3e-22 Score=137.34 Aligned_cols=86 Identities=19% Similarity=0.313 Sum_probs=80.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred cCCCCC
Q 028447 116 ENRKKP 121 (209)
Q Consensus 116 ~~~~~~ 121 (209)
++....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 766443
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.6e-22 Score=138.00 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=79.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEE-EeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~-~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.+.++|||+|||+++++++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98654
No 33
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=6.3e-22 Score=139.50 Aligned_cols=85 Identities=31% Similarity=0.447 Sum_probs=79.0
Q ss_pred CCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 30 ~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
+.....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34456778999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEEEec
Q 028447 110 TVVFAE 115 (209)
Q Consensus 110 ~V~~a~ 115 (209)
.|++|+
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 34
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=143.14 Aligned_cols=85 Identities=31% Similarity=0.575 Sum_probs=80.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+.+..++|||+|||+++++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++++..
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 997654
No 35
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.7e-22 Score=137.97 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=78.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCC-CCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~-g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+.++|||+|||+++++++|+++|.+|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|+|+.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45678999999999999999999999999 999999999887 899999999999999999999 999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
++.++..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9986543
No 36
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=1.5e-21 Score=136.78 Aligned_cols=84 Identities=27% Similarity=0.397 Sum_probs=78.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..++.++|||+|||+++++++|+++|.+|| |..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999999999999999999999999999999 999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998654
No 37
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=138.34 Aligned_cols=85 Identities=25% Similarity=0.353 Sum_probs=79.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+.++.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 45668899999999999999999999999999999999887 58899999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987543
No 38
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.1e-22 Score=139.77 Aligned_cols=85 Identities=25% Similarity=0.381 Sum_probs=80.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98654
No 39
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=7.6e-22 Score=139.82 Aligned_cols=86 Identities=22% Similarity=0.386 Sum_probs=80.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998654
No 40
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=1.2e-21 Score=147.31 Aligned_cols=85 Identities=26% Similarity=0.318 Sum_probs=80.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.++.++|||+|||+++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
|++..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98644
No 41
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=138.06 Aligned_cols=85 Identities=22% Similarity=0.369 Sum_probs=80.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceE-EEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE----
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK-DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE---- 108 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~---- 108 (209)
..+.++|||+|||+++++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 56789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 028447 109 LTVVFAEENR 118 (209)
Q Consensus 109 i~V~~a~~~~ 118 (209)
|+|+||++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997653
No 42
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=3.8e-22 Score=145.70 Aligned_cols=86 Identities=31% Similarity=0.440 Sum_probs=81.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..++.++|||+|||+++++++|+++|++||+|..|.|+.++.++..+|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
|+.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998654
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=6.5e-22 Score=137.30 Aligned_cols=84 Identities=27% Similarity=0.471 Sum_probs=78.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCC---CCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY---TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 5688999999999999999999999999999999999
Q ss_pred EEeccCC
Q 028447 112 VFAEENR 118 (209)
Q Consensus 112 ~~a~~~~ 118 (209)
+++....
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998654
No 44
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.87 E-value=2.6e-22 Score=143.70 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=65.2
Q ss_pred CCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 29 ~~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
.+.+.....++|||+|||+++++++|+++|.+||+|..|.|+.+ |||||+|.+.++|++||+.||+.+|+|+.
T Consensus 8 ~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 8 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 33444566799999999999999999999999999999999854 89999999999999999999999999988
Q ss_pred -----EEEEEec
Q 028447 109 -----LTVVFAE 115 (209)
Q Consensus 109 -----i~V~~a~ 115 (209)
|+|+.+.
T Consensus 81 ~~~~~i~v~~~~ 92 (115)
T 3beg_B 81 GETAYIRVKVDG 92 (115)
T ss_dssp SCCCBCEEEECC
T ss_pred eeeEEEEeccCC
Confidence 5555543
No 45
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=5.4e-22 Score=137.70 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=78.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+..++|||+|||+.+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 35667899999999999999999999999999888888888899999999999999999999999999999999999999
Q ss_pred EeccC
Q 028447 113 FAEEN 117 (209)
Q Consensus 113 ~a~~~ 117 (209)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98753
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=136.31 Aligned_cols=83 Identities=29% Similarity=0.379 Sum_probs=78.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEE--------EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD--------IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
...+.++|||+|||+++++++|+++|++||.|.. |.|+.++.+|..+|||||+|.+.++|+.||+.|||..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3566899999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred cCeEEEEEEec
Q 028447 105 LGRELTVVFAE 115 (209)
Q Consensus 105 ~g~~i~V~~a~ 115 (209)
+|+.|.|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 47
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.1e-22 Score=145.00 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=76.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+++++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4567899999999999999999999999999886666666799999999999999999999998 999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
+..+.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97543
No 48
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=6.4e-22 Score=139.25 Aligned_cols=86 Identities=20% Similarity=0.391 Sum_probs=80.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee---cCeEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL---LGREL 109 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i---~g~~i 109 (209)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..| .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456678999999999999999999999999999999999998999999999999999999999999999987 89999
Q ss_pred EEEEeccCC
Q 028447 110 TVVFAEENR 118 (209)
Q Consensus 110 ~V~~a~~~~ 118 (209)
.|+++.++.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998654
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=8e-22 Score=133.94 Aligned_cols=83 Identities=24% Similarity=0.468 Sum_probs=77.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCC-cceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE-PRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~-~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
.+++|||+|||+++++++|+++|++||.|..|.|+.+..++. .+|||||+|.+.++|++|++.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 478999999999999999999999999999999998877665 8999999999999999999999999999999999999
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.4e-21 Score=134.85 Aligned_cols=84 Identities=27% Similarity=0.375 Sum_probs=77.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+....++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ .+|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4567899999999999999999999999999999999988543 58999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
|+.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998654
No 51
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=1.4e-21 Score=140.21 Aligned_cols=83 Identities=24% Similarity=0.339 Sum_probs=78.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+.+..++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Eec
Q 028447 113 FAE 115 (209)
Q Consensus 113 ~a~ 115 (209)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 52
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.2e-21 Score=140.12 Aligned_cols=81 Identities=23% Similarity=0.404 Sum_probs=75.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.++|||+|||+++++++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|+.||+.|||..|+|+.|.|+++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999999875 44789999999999999999999999999999999999976
Q ss_pred CCC
Q 028447 117 NRK 119 (209)
Q Consensus 117 ~~~ 119 (209)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=1.1e-22 Score=139.25 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=72.9
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCC--ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
.+|||+|||+++++++|+++|++|| .|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 028447 116 ENRK 119 (209)
Q Consensus 116 ~~~~ 119 (209)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 54
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=8.9e-22 Score=138.33 Aligned_cols=88 Identities=28% Similarity=0.399 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
...+..++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3467789999999999999999999999999999999999998999999999999999999999988 999999999999
Q ss_pred EEeccCCCC
Q 028447 112 VFAEENRKK 120 (209)
Q Consensus 112 ~~a~~~~~~ 120 (209)
+++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999866543
No 55
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.86 E-value=3.3e-22 Score=137.92 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=75.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+..++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34557899999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred Eec
Q 028447 113 FAE 115 (209)
Q Consensus 113 ~a~ 115 (209)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 975
No 56
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=2e-21 Score=143.22 Aligned_cols=89 Identities=24% Similarity=0.453 Sum_probs=82.8
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
..+.+..++|||+|||+++++++|+++|+.||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34556788999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 028447 111 VVFAEENRK 119 (209)
Q Consensus 111 V~~a~~~~~ 119 (209)
|+++..+..
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999986543
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=135.14 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=77.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+..++|||+|||+.+++++|+++|.+||+|..|.|+.++. +.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 456678999999999999999999999999999999999875 8899999999999999999999999999999999999
Q ss_pred Eecc
Q 028447 113 FAEE 116 (209)
Q Consensus 113 ~a~~ 116 (209)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9863
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.8e-21 Score=135.10 Aligned_cols=85 Identities=35% Similarity=0.549 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
.......++|||+|||+++++++|+++|.+||.|..|.|+.+ +.+++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345667899999999999999999999999999999999654 45789999999999999999999999999999999
Q ss_pred EEEeccCC
Q 028447 111 VVFAEENR 118 (209)
Q Consensus 111 V~~a~~~~ 118 (209)
|+|+++..
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99998654
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=1.5e-21 Score=133.76 Aligned_cols=85 Identities=27% Similarity=0.411 Sum_probs=78.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+++++++|+++|.+||.|..|.|+.+ ++..+|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999874 78889999999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
++++...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9986543
No 60
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=4.1e-21 Score=130.34 Aligned_cols=81 Identities=28% Similarity=0.406 Sum_probs=76.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+++++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+ +++..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 45678899999999999999999999999999999999999899999999999999999999995 58889999999999
Q ss_pred Ee
Q 028447 113 FA 114 (209)
Q Consensus 113 ~a 114 (209)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 61
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=2.1e-22 Score=140.63 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=79.0
Q ss_pred CCCCCeEEEeCCCC------CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC-
Q 028447 34 RDLPTSLLVRNLRH------DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG- 106 (209)
Q Consensus 34 ~~~~~~i~V~nL~~------~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g- 106 (209)
....++|||+|||+ ++++++|.++|++||.|..|.|+.++.||.++|||||+|.+.++|++||+.|||..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecc
Q 028447 107 RELTVVFAEE 116 (209)
Q Consensus 107 ~~i~V~~a~~ 116 (209)
+.|.|.+|.+
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999975
No 62
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.86 E-value=3.6e-21 Score=134.88 Aligned_cols=80 Identities=30% Similarity=0.485 Sum_probs=73.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+++++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 44667899999999999999999999999999999987 5699999999999999999999999999999999
Q ss_pred EeccCCCC
Q 028447 113 FAEENRKK 120 (209)
Q Consensus 113 ~a~~~~~~ 120 (209)
|+.++...
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99876543
No 63
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=138.39 Aligned_cols=85 Identities=34% Similarity=0.573 Sum_probs=80.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
....+++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeccC
Q 028447 113 FAEEN 117 (209)
Q Consensus 113 ~a~~~ 117 (209)
+++++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99765
No 64
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-21 Score=139.52 Aligned_cols=83 Identities=20% Similarity=0.377 Sum_probs=78.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+++++++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8753
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.5e-21 Score=133.32 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
....++|||+|||+++++++|+ ++|.+||.|..|.|+.++.+ ++||||+|.+.++|++||+.|||..|+|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999988755 7899999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 028447 110 TVVFAEENRK 119 (209)
Q Consensus 110 ~V~~a~~~~~ 119 (209)
.|++|++...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=146.87 Aligned_cols=84 Identities=13% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCC--ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+..++|||+|||+++++++|+++|..|| .|..|.|+.|+.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
+|.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 997643
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=4.3e-21 Score=138.91 Aligned_cols=89 Identities=27% Similarity=0.367 Sum_probs=82.3
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
...+..++|||+|||+.+++++|+++|.+||.|..|.|+.+. +|..+|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345778899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 028447 112 VFAEENRKKP 121 (209)
Q Consensus 112 ~~a~~~~~~~ 121 (209)
++|......+
T Consensus 109 ~~a~~~~~~~ 118 (124)
T 2kt5_A 109 QLVASQIDLE 118 (124)
T ss_dssp EEECCTTCCC
T ss_pred EEeCCCCCCC
Confidence 9998765433
No 68
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=8e-21 Score=130.03 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=77.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+++++++|+++|..| .|..|.|+.+ .+|.++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 35668899999999999999999999999 9999999988 789999999999999999999999 99999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998654
No 69
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-20 Score=132.38 Aligned_cols=85 Identities=22% Similarity=0.409 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
......++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 345678899999999999999999999999999999999999899999999999999999999997 478999999999
Q ss_pred EEeccCC
Q 028447 112 VFAEENR 118 (209)
Q Consensus 112 ~~a~~~~ 118 (209)
+++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9998654
No 70
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=3.3e-21 Score=146.32 Aligned_cols=86 Identities=22% Similarity=0.388 Sum_probs=79.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
+..+..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 986543
No 71
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=137.32 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=79.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhcc-CCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce-ecCeEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQ-FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL-LLGRELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-i~g~~i~ 110 (209)
+..+.++|||+|||+++++++|+++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+.. |+|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4567899999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred EEEeccCC
Q 028447 111 VVFAEENR 118 (209)
Q Consensus 111 V~~a~~~~ 118 (209)
|+++.++.
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99997654
No 72
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=136.40 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=77.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH---HhhccCCceEEEEeecCCCCC---CcceEEEEEecCHHHHHHHHHhhCCceecCe
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLR---GPFGQFGRLKDIYLPRDYYTG---EPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~---~~f~~~G~i~~~~i~~~~~~g---~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 107 (209)
..+.++|||+|||+.+++++|. ++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4557899999999999999999 999999999999999887654 4559999999999999999999999999999
Q ss_pred EEEEEEeccCC
Q 028447 108 ELTVVFAEENR 118 (209)
Q Consensus 108 ~i~V~~a~~~~ 118 (209)
.|.|+||.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 73
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=4.1e-21 Score=130.74 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=76.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|+ .||+..|+|+.|.|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 9999999999999999875
Q ss_pred C
Q 028447 117 N 117 (209)
Q Consensus 117 ~ 117 (209)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 74
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-21 Score=137.13 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--ceecCeEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELTV 111 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i~V 111 (209)
..+.++|||+|||+.+++++|+++|++||+|..|.|+.+ +|||||+|++.++|+.||+.|++ ..|+|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 466899999999999999999999999999999999965 79999999999999999998864 7899999999
Q ss_pred EEeccCCCCC
Q 028447 112 VFAEENRKKP 121 (209)
Q Consensus 112 ~~a~~~~~~~ 121 (209)
+||+.+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998766444
No 75
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.85 E-value=6.5e-21 Score=140.31 Aligned_cols=83 Identities=34% Similarity=0.486 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
......++|||+|||..+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEe
Q 028447 112 VFA 114 (209)
Q Consensus 112 ~~a 114 (209)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 76
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.5e-21 Score=134.28 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=77.9
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEE-EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 31 ~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
.+.....++|||+|||+++++++|+++|.+||.|.. |.|+.+ .+|.++|||||+|.+.++|++||+. |+..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 344567899999999999999999999999999987 888888 6899999999999999999999977 9999999999
Q ss_pred EEEEeccCC
Q 028447 110 TVVFAEENR 118 (209)
Q Consensus 110 ~V~~a~~~~ 118 (209)
.|.++..+.
T Consensus 87 ~v~~~~~~~ 95 (104)
T 1wg5_A 87 EIFKSSRAE 95 (104)
T ss_dssp EEEEECTTT
T ss_pred EEEECCHHH
Confidence 999987543
No 77
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=131.60 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh--CCceecCeEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM--DGYLLLGRELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~i~g~~i~ 110 (209)
..++.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|+.||+.| ++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999998864 799999999999999999977 46789999999
Q ss_pred EEEeccCCCC
Q 028447 111 VVFAEENRKK 120 (209)
Q Consensus 111 V~~a~~~~~~ 120 (209)
|+|++.+..+
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999866543
No 78
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=6.7e-21 Score=135.04 Aligned_cols=86 Identities=28% Similarity=0.390 Sum_probs=76.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+..++|||+|||+++++++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|++||+.+ +..|+|+.|.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999876 599999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 79
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-21 Score=137.54 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=77.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCce-EEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL-KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
...+.++|||+|||+++++++|+++|..||.| ..|.|+.++ +|.++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34667899999999999999999999999999 889999998 899999999999999999999976 999999999999
Q ss_pred EEeccC
Q 028447 112 VFAEEN 117 (209)
Q Consensus 112 ~~a~~~ 117 (209)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999754
No 80
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.6e-21 Score=134.20 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=71.7
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--ceecCeEEE
Q 028447 34 RDLPTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELT 110 (209)
Q Consensus 34 ~~~~~~i~V~nL~~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i~ 110 (209)
.++.++|||+|||+ .+++++|+++|++||.|..|.|+.+ ++||||+|++.++|+.||+.||+ ..|+|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45788999999999 9999999999999999999999865 58999999999999999999986 469999999
Q ss_pred EEEeccCC
Q 028447 111 VVFAEENR 118 (209)
Q Consensus 111 V~~a~~~~ 118 (209)
|+||+...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998543
No 81
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.6e-22 Score=137.79 Aligned_cols=86 Identities=29% Similarity=0.465 Sum_probs=80.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
+.+...
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 986553
No 82
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=130.93 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=74.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+++++++|+++|.+||.| .|+.+ .++..+|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45668999999999999999999999999987 45555 578899999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
|+.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 997653
No 83
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-21 Score=133.65 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=75.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+++++++|+++|.+||.| .|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 34667899999999999999999999999954 99999997 8999999999999999999999 579999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987543
No 84
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=130.66 Aligned_cols=80 Identities=28% Similarity=0.381 Sum_probs=74.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec--CeEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL--GRELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~--g~~i~ 110 (209)
..++.++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|+ |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4566799999999999999999999999999999999854 689999999999999999999999999 99999
Q ss_pred EEEeccCC
Q 028447 111 VVFAEENR 118 (209)
Q Consensus 111 V~~a~~~~ 118 (209)
|+|++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998654
No 85
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-21 Score=142.91 Aligned_cols=85 Identities=21% Similarity=0.393 Sum_probs=79.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEE--EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc----eecC
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD--IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----LLLG 106 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~----~i~g 106 (209)
.....++|||+|||+++++++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+. +|++||+.|||. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3466789999999999999999999999999976 99999999999999999999999 999999999999 9999
Q ss_pred eEEEEEEeccCC
Q 028447 107 RELTVVFAEENR 118 (209)
Q Consensus 107 ~~i~V~~a~~~~ 118 (209)
+.|.|+++.+..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999997653
No 86
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.84 E-value=1.3e-20 Score=144.81 Aligned_cols=85 Identities=28% Similarity=0.391 Sum_probs=79.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
||....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997654
No 87
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=7.3e-21 Score=136.75 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCc---eEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
.+....++|||+|||+++++++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34567889999999999999999999999999 89999998876 8999999999999999999998 9999999999
Q ss_pred EEEEEecc
Q 028447 109 LTVVFAEE 116 (209)
Q Consensus 109 i~V~~a~~ 116 (209)
|.|.++..
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999864
No 88
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=128.73 Aligned_cols=79 Identities=22% Similarity=0.418 Sum_probs=73.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45678899999999999999999999999999999998 4599999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
++.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9986543
No 89
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=7.7e-21 Score=129.90 Aligned_cols=79 Identities=25% Similarity=0.461 Sum_probs=73.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+++++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678899999999999999999999999999999998 6899999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
++.++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9986553
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.8e-21 Score=134.31 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=78.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCc-eEEEEee-cCCCCCCcceEEEEEecCHHHHHHHHHhhC--CceecCeEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGR-LKDIYLP-RDYYTGEPRGFGFVQYIDPADAADAKYHMD--GYLLLGRELT 110 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~-i~~~~i~-~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~--g~~i~g~~i~ 110 (209)
.+.++|||+|||+++++++|.++|.+||. |..|.|+ .+..+|.++|||||+|.+.++|+.||+.|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EEEeccCCC
Q 028447 111 VVFAEENRK 119 (209)
Q Consensus 111 V~~a~~~~~ 119 (209)
|+||.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 91
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-21 Score=132.50 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=76.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
.+.++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 56789999999999999999999999999999999999989999999999999999999999999999999999887764
Q ss_pred c
Q 028447 115 E 115 (209)
Q Consensus 115 ~ 115 (209)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 92
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=135.13 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=78.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
+..++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+. ++..|+|+.|.|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4468999999999999999999999999999999999998999999999999999999999977 999999999999999
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
.++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8654
No 93
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-21 Score=134.88 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=76.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
......+|||+|||+++|+++|.++|++||.|..|.|+.++. |.++|||||+|.+.++|+.||. +++..|+|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 345578999999999999999999999999999999999986 9999999999999999999997 89999999999999
Q ss_pred Eecc
Q 028447 113 FAEE 116 (209)
Q Consensus 113 ~a~~ 116 (209)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9764
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=131.20 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce--ecCeEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL--LLGRELTV 111 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~--i~g~~i~V 111 (209)
.++..+|||+|||+.+++++|.++|++||+|..|.|+.. +|||||+|++.++|++||+.|++.. |.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 456789999999999999999999999999999999854 7899999999999999999999875 88999999
Q ss_pred EEeccCC
Q 028447 112 VFAEENR 118 (209)
Q Consensus 112 ~~a~~~~ 118 (209)
+|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998654
No 95
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.6e-21 Score=134.19 Aligned_cols=86 Identities=33% Similarity=0.546 Sum_probs=78.3
Q ss_pred CCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 30 ~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
........++|||+|||.++++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456778999999999999999999999999999999999875 3478999999999999999999999999999999
Q ss_pred EEEEeccC
Q 028447 110 TVVFAEEN 117 (209)
Q Consensus 110 ~V~~a~~~ 117 (209)
.|+++.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999764
No 96
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=129.98 Aligned_cols=83 Identities=28% Similarity=0.400 Sum_probs=75.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+++++++|+++|..|+ .|.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 356789999999999999999999999874 56677787889999999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
|++++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998654
No 97
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1.6e-20 Score=141.26 Aligned_cols=86 Identities=48% Similarity=0.714 Sum_probs=81.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
+.++..
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 986543
No 98
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=135.39 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=75.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCC-CCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDY-YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
.....++|||+|||+++++++|+++|++|| |..|.|+.+. .+|.++|||||+|.+.++|++|| .|||..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 456789999999999999999999999999 9999999988 68999999999999999999999 99999999999999
Q ss_pred EEeccCC
Q 028447 112 VFAEENR 118 (209)
Q Consensus 112 ~~a~~~~ 118 (209)
+++.+..
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997643
No 99
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=2.2e-21 Score=142.71 Aligned_cols=87 Identities=47% Similarity=0.706 Sum_probs=81.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+.+..++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
|++++..
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9986553
No 100
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=132.69 Aligned_cols=85 Identities=22% Similarity=0.392 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee-------
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL------- 104 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i------- 104 (209)
......++|||+|||+.+++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345678999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred -cCeEEEEEEeccC
Q 028447 105 -LGRELTVVFAEEN 117 (209)
Q Consensus 105 -~g~~i~V~~a~~~ 117 (209)
.+++|.|.|+.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999754
No 101
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=132.32 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc--eecCeEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY--LLLGRELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~i~g~~i~ 110 (209)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||+.|++. .|+|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998854 789999999999999999988764 59999999
Q ss_pred EEEeccCCC
Q 028447 111 VVFAEENRK 119 (209)
Q Consensus 111 V~~a~~~~~ 119 (209)
|+|++.+..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999986553
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=125.90 Aligned_cols=77 Identities=26% Similarity=0.382 Sum_probs=71.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh-CCceecCeEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM-DGYLLLGRELTV 111 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~i~V 111 (209)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.|++.| ++..|+|+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 4566789999999999999999999999999999999864 799999999999999999999 999999999999
Q ss_pred EEec
Q 028447 112 VFAE 115 (209)
Q Consensus 112 ~~a~ 115 (209)
+||+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 103
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=3.6e-21 Score=127.06 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=72.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
+|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|++ ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999996 9999999999999875
No 104
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=1.5e-20 Score=135.82 Aligned_cols=81 Identities=23% Similarity=0.468 Sum_probs=77.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|| .|||..|+|+.|.|+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999999889999999999999999999999 899999999999999987
Q ss_pred cC
Q 028447 116 EN 117 (209)
Q Consensus 116 ~~ 117 (209)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 105
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=127.68 Aligned_cols=78 Identities=23% Similarity=0.419 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4668899999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
+.+...
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 986543
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=135.09 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=74.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--ceecCeEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i~ 110 (209)
..++.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||+.|++ ..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999865 79999999999999999999885 689999999
Q ss_pred EEEeccCCCCC
Q 028447 111 VVFAEENRKKP 121 (209)
Q Consensus 111 V~~a~~~~~~~ 121 (209)
|+||+.+..+.
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998766443
No 107
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=129.88 Aligned_cols=80 Identities=30% Similarity=0.515 Sum_probs=74.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999855 6899999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998654
No 108
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=1.1e-20 Score=139.07 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=78.6
Q ss_pred CCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCc---eEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC
Q 028447 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 106 (209)
Q Consensus 30 ~~~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 106 (209)
.+++....++|||+|||+++|+++|+++|++||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|
T Consensus 37 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 37 LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp SCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 3456677899999999999999999999999999 88999999886 9999999999999999999998 99999999
Q ss_pred eEEEEEEecc
Q 028447 107 RELTVVFAEE 116 (209)
Q Consensus 107 ~~i~V~~a~~ 116 (209)
+.|.|.++..
T Consensus 115 r~i~V~~a~~ 124 (136)
T 2hgl_A 115 RYIEVFKSHR 124 (136)
T ss_dssp SEEEEEECCH
T ss_pred EEEEEEECCh
Confidence 9999999864
No 109
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=1.9e-21 Score=132.78 Aligned_cols=82 Identities=28% Similarity=0.480 Sum_probs=74.1
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 117 (209)
++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.+ |+.|+..|||..|+|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999875
Q ss_pred CCC
Q 028447 118 RKK 120 (209)
Q Consensus 118 ~~~ 120 (209)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 110
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=130.25 Aligned_cols=81 Identities=31% Similarity=0.464 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+..++|||+|||+++++++|+++|.+||.|. +.++. +..+|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456688999999999999999999999999996 56663 3568999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998654
No 111
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=7.7e-21 Score=151.66 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=77.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC--ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
..++|||+||+++|++++|+++|.+|| .|+.|.|+.++.++.++|||||+|.+.++|++||+.||++.|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
|+...
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 97543
No 112
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.2e-20 Score=126.94 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=71.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccC--CceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQF--GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
.....++|||+|||+.+++++|+++|.+| |.|..|.++ +|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 999998876 67999999999999999999999999999999
Q ss_pred EEEeccCC
Q 028447 111 VVFAEENR 118 (209)
Q Consensus 111 V~~a~~~~ 118 (209)
|++++++.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99998654
No 113
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=1.3e-20 Score=133.89 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=72.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
....++|||+|||+++++++|+++|.+|| +|..+.|+.+ .++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44578999999999999999999999999 8999988632 468999999999999999999999999999999999
Q ss_pred EeccC
Q 028447 113 FAEEN 117 (209)
Q Consensus 113 ~a~~~ 117 (209)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98643
No 114
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.5e-20 Score=125.75 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
...-|||+||++.+|+++|+++|.+||+|..+.++. ++|||||+|.+.++|+.|++.||+..|+|+.|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999985 48999999999999999999999999999999999984
No 115
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.6e-21 Score=126.59 Aligned_cols=76 Identities=30% Similarity=0.477 Sum_probs=73.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
++|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999999 9999999999987
No 116
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=131.96 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=75.4
Q ss_pred CCCCCeEEEeCCCCCC------CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe
Q 028447 34 RDLPTSLLVRNLRHDC------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~------t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 107 (209)
....++|||+|||+.+ ++++|.++|.+||.|..|.|+ ..+|.++|||||+|.+.++|+.||..|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4457899999999999 789999999999999999988 36889999999999999999999999999999998
Q ss_pred -EEEEEEeccC
Q 028447 108 -ELTVVFAEEN 117 (209)
Q Consensus 108 -~i~V~~a~~~ 117 (209)
.|.|+++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 117
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=131.52 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=73.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+++++++|+++|+.| .|..|.|+.++. |.++|||||+|.+.++|++|| .||+..|+|+.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3446799999999999999999999999 899999999875 899999999999999999999 7999999999999988
Q ss_pred ecc
Q 028447 114 AEE 116 (209)
Q Consensus 114 a~~ 116 (209)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 854
No 118
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=135.43 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=74.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHH----HhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
...+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|+.||+.|||..|.|++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 45667899999999999999876 6999999999988753 6788999999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 028447 109 LTVVFAEENR 118 (209)
Q Consensus 109 i~V~~a~~~~ 118 (209)
|.|+||..+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999997643
No 119
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=9e-20 Score=126.53 Aligned_cols=77 Identities=26% Similarity=0.487 Sum_probs=71.5
Q ss_pred CCCCCCeEEEeCCCC-CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 33 GRDLPTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
...+.++|||+|||+ ++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 456789999999998 99999999999999999999985 789999999999999999999999999999999
Q ss_pred EEeccC
Q 028447 112 VFAEEN 117 (209)
Q Consensus 112 ~~a~~~ 117 (209)
++++.+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998754
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=4.6e-20 Score=130.52 Aligned_cols=79 Identities=30% Similarity=0.506 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+++++++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 35668899999999999999999999999999999998 6899999999999999999999999999999999
Q ss_pred EeccCCC
Q 028447 113 FAEENRK 119 (209)
Q Consensus 113 ~a~~~~~ 119 (209)
|+++...
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9987553
No 121
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.1e-20 Score=129.86 Aligned_cols=79 Identities=18% Similarity=0.366 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||+.|||..|+|+.|.|+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999865 78999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
+++..
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98654
No 122
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=1.4e-20 Score=130.22 Aligned_cols=84 Identities=21% Similarity=0.477 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHH----HhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
+.++.++|||+|||+++++++|+ ++|.+||.|..|.|+. +|.++|||||+|.+.++|+.|++.|||..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45678999999999999999999 9999999999998873 5677899999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 028447 109 LTVVFAEENRK 119 (209)
Q Consensus 109 i~V~~a~~~~~ 119 (209)
|.|+|+.++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987543
No 123
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.9e-21 Score=136.62 Aligned_cols=82 Identities=26% Similarity=0.419 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceE----EEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK----DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~----~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
.++.++|||+|||+++++++|+++|.+||.|. .+.++ ++.++|||||+|.+.++|+.||+.||+..|+|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 35678999999999999999999999999984 44444 77889999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 028447 110 TVVFAEENRK 119 (209)
Q Consensus 110 ~V~~a~~~~~ 119 (209)
.|+|+.++..
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999986553
No 124
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=3.3e-21 Score=134.51 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=76.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+++++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|+|+.|.|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 456789999999999999999999999999887 666777788899999999999999999998 999999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 986554
No 125
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=133.27 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=77.2
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCc---eEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
.+.+..++|||+|||+++++++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34577899999999999999999999999998 89999999986 9999999999999999999998 9999999999
Q ss_pred EEEEEecc
Q 028447 109 LTVVFAEE 116 (209)
Q Consensus 109 i~V~~a~~ 116 (209)
|.|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99999865
No 126
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.3e-20 Score=126.87 Aligned_cols=79 Identities=28% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCc-eEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC-ceecCeEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR-LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG-YLLLGRELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~i~g~~i~ 110 (209)
.....++|||+|||+++++++|+++|.+||. |..+.+. .+|||||+|.+.++|++||+.||| ..|+|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 5555553 378999999999999999999999 999999999
Q ss_pred EEEeccCC
Q 028447 111 VVFAEENR 118 (209)
Q Consensus 111 V~~a~~~~ 118 (209)
|+++.++.
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 127
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.9e-20 Score=125.64 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=70.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+++++++|+++|.+||.|..| +.+..++. ||||+|.+.++|++||. ||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 34567899999999999999999999999999987 44554554 99999999999999998 99999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++..+.
T Consensus 78 ~a~~~~ 83 (94)
T 2e5g_A 78 PREQKE 83 (94)
T ss_dssp CSCCSC
T ss_pred ECCcCC
Confidence 886544
No 128
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.7e-20 Score=126.25 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=73.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEE-EeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~-~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
.....++|||+|||+++++++|+++|.+||.|..| .|+.++.+ +.|||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999 58877544 34999999999999999999999999999999
Q ss_pred EEeccCC
Q 028447 112 VFAEENR 118 (209)
Q Consensus 112 ~~a~~~~ 118 (209)
+++.++.
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998763
No 129
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-20 Score=132.13 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=71.2
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--ceecCeEEE
Q 028447 34 RDLPTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELT 110 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i~ 110 (209)
.++.++|||+|||++ +++++|+++|++||+|..|.|+.. +|||||+|++.++|+.||+.|++ ..|+|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 999999999999999999999843 79999999999999999998864 569999999
Q ss_pred EEEeccCC
Q 028447 111 VVFAEENR 118 (209)
Q Consensus 111 V~~a~~~~ 118 (209)
|+||+.+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997544
No 130
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.3e-20 Score=127.74 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=71.2
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 34 RDLPTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.++.++|||+|||+ .+++++|+++|.+||.|..|.|. +|||||+|.+.++|+.||+.|||..|.|+.|.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 46688999999998 99999999999999999999986 7899999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++....
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 998654
No 131
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.8e-20 Score=127.76 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
...++|||+|||.++++++|+++|.+||.|..|.|+. .+|||||+|.+.++|+.||..|||..|+|+.|.|+|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4468999999999999999999999999999999983 3799999999999999999999999999999999998
Q ss_pred cc
Q 028447 115 EE 116 (209)
Q Consensus 115 ~~ 116 (209)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=7e-20 Score=126.46 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=73.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
...+.++|||+|||+.+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 2467889999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997654
No 133
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=124.19 Aligned_cols=73 Identities=27% Similarity=0.513 Sum_probs=67.8
Q ss_pred CCeEEEeCCCCCC------CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe-EE
Q 028447 37 PTSLLVRNLRHDC------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR-EL 109 (209)
Q Consensus 37 ~~~i~V~nL~~~~------t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~i 109 (209)
.++|||+|||+.+ ++++|+++|++||.|..|.|+ ..+|.++|||||+|.+.++|++||+.|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 45889999999999999999999999999999999 88
Q ss_pred EE
Q 028447 110 TV 111 (209)
Q Consensus 110 ~V 111 (209)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 134
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-20 Score=128.99 Aligned_cols=76 Identities=30% Similarity=0.595 Sum_probs=71.6
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 117 (209)
++|||+|||+++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.||+..|+|+.|.|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5899999999999999999999999999999999999865
Q ss_pred C
Q 028447 118 R 118 (209)
Q Consensus 118 ~ 118 (209)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=2.2e-20 Score=123.15 Aligned_cols=75 Identities=25% Similarity=0.352 Sum_probs=71.5
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
+|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999899999999999999999999996 5899999999999885
No 136
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-21 Score=138.37 Aligned_cols=85 Identities=28% Similarity=0.368 Sum_probs=79.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEE--------EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD--------IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 105 (209)
..+.++|||+|||+.+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|++||+.||+..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 889999888999999999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 028447 106 GRELTVVFAEENR 118 (209)
Q Consensus 106 g~~i~V~~a~~~~ 118 (209)
|+.|.|+++.++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999997654
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=129.12 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=71.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||+|||+.+++++|+++|.+||.|..|.|+. .++||||+|.+.++|+.||+.|||..|+|+.|.|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999874 37899999999999999999999999999999999997
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 138
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=1.7e-19 Score=128.68 Aligned_cols=81 Identities=30% Similarity=0.510 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
.++.++|||+|||+.+++++|.++|..||.|..|.|+.+ +.++|||||+|.+.++|+.||+.|||..|+|+.|.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999865 45589999999999999999999999999999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
+.+.
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9753
No 139
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=3.3e-19 Score=140.38 Aligned_cols=84 Identities=25% Similarity=0.378 Sum_probs=77.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
..+.++|||+|||+++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8643
No 140
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=131.60 Aligned_cols=80 Identities=21% Similarity=0.237 Sum_probs=73.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCce----EEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRL----KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i----~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
...++|||+|||+++|+++|+++|++||.| ..|.|+.+. +|.++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 567899999999999999999999999975 688888884 899999999999999999999975 99999999999
Q ss_pred EEEecc
Q 028447 111 VVFAEE 116 (209)
Q Consensus 111 V~~a~~ 116 (209)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 999864
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=120.75 Aligned_cols=78 Identities=28% Similarity=0.413 Sum_probs=70.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
..+.++|||+|| ++++++|+++|.+||+|..|.|. ..+|||||+|.+.++|++||+.||+..|+|+.|.|+|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999996 89999999999999999999986 3478999999999999999999999999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 986543
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=4.3e-20 Score=136.78 Aligned_cols=87 Identities=26% Similarity=0.436 Sum_probs=73.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEE--eecC---CCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIY--LPRD---YYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~--i~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
..+.++|||+|||+.+++++|.++|.+||.|..+. ++.+ ..+|.++|||||+|.+.++|+.||..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999987641 1111 236788999999999999999999999999999999
Q ss_pred EEEEEeccCCCC
Q 028447 109 LTVVFAEENRKK 120 (209)
Q Consensus 109 i~V~~a~~~~~~ 120 (209)
|.|++|.....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999865543
No 143
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=2.3e-19 Score=127.10 Aligned_cols=75 Identities=25% Similarity=0.498 Sum_probs=70.1
Q ss_pred CCCCeEEEeCCCCC-CCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 35 DLPTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 35 ~~~~~i~V~nL~~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
...++|||+|||++ +++++|+++|.+||.|..|.|. ++||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH--------KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE--------TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 44589999999999 9999999999999999999883 79999999999999999999999999999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9743
No 144
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=3.3e-20 Score=136.96 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=75.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+++++++|+++|++|| |+.|.|+.++. |.++|||||+|.+.++|++|| .||+..|+|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999 77999999975 999999999999999999999 8899999999999999
Q ss_pred eccCCC
Q 028447 114 AEENRK 119 (209)
Q Consensus 114 a~~~~~ 119 (209)
+.....
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=127.98 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=71.2
Q ss_pred CCCCCeEEE--eCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee-----cC
Q 028447 34 RDLPTSLLV--RNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL-----LG 106 (209)
Q Consensus 34 ~~~~~~i~V--~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i-----~g 106 (209)
.++.++||| +||++.+++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++|++.|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 456789999 779999999999999999999999988743 68999999999999999999999998 68
Q ss_pred eEEEEEEeccCC
Q 028447 107 RELTVVFAEENR 118 (209)
Q Consensus 107 ~~i~V~~a~~~~ 118 (209)
.+|.|.|+....
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999997544
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=1.1e-19 Score=126.96 Aligned_cols=82 Identities=21% Similarity=0.440 Sum_probs=76.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|++||+ ++..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999997 99999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 98654
No 147
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.7e-19 Score=128.67 Aligned_cols=80 Identities=15% Similarity=0.281 Sum_probs=72.8
Q ss_pred CCeEEEeCC----CCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHH----HHHHHH--hhCCc
Q 028447 37 PTSLLVRNL----RHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PAD----AADAKY--HMDGY 102 (209)
Q Consensus 37 ~~~i~V~nL----~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~----a~~Ai~--~l~g~ 102 (209)
+++|||+|| |+.|++++|+++|..||+|..|.++.|+.||.++|||||+|.+ +++ |..||. .|+|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 589999999 9999999999999999999999999999999999999999995 333 788888 78999
Q ss_pred eecCeEEEEEEecc
Q 028447 103 LLLGRELTVVFAEE 116 (209)
Q Consensus 103 ~i~g~~i~V~~a~~ 116 (209)
.|+|+.|.|++...
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998653
No 148
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.6e-19 Score=131.02 Aligned_cols=81 Identities=22% Similarity=0.225 Sum_probs=73.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceE--EEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK--DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 110 (209)
.....++|||+|||+++++++|+++|++| .|+ .|.|+.++. |.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 677 899999886 9999999999999999999996 477999999999
Q ss_pred EEEecc
Q 028447 111 VVFAEE 116 (209)
Q Consensus 111 V~~a~~ 116 (209)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998864
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=9e-19 Score=131.42 Aligned_cols=83 Identities=33% Similarity=0.461 Sum_probs=78.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||..+++++|.++|++||.|..+.++.+..+|.++|||||+|.+.++|++|+..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Eec
Q 028447 113 FAE 115 (209)
Q Consensus 113 ~a~ 115 (209)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=1.1e-18 Score=131.10 Aligned_cols=82 Identities=35% Similarity=0.631 Sum_probs=78.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CC
Q 028447 117 NR 118 (209)
Q Consensus 117 ~~ 118 (209)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 151
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=7.6e-19 Score=119.52 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||+|||+.+++++|+++|.+| .|..+.|. ..+|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999885 458999999999999999999999999999999999987
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=7.5e-19 Score=132.36 Aligned_cols=83 Identities=27% Similarity=0.438 Sum_probs=78.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
+.++|||+|||+++++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=1.4e-18 Score=126.37 Aligned_cols=77 Identities=26% Similarity=0.382 Sum_probs=69.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceE-EEEEecCHHHHHHHHHhhCCceecC--eEEEEEE
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF-GFVQYIDPADAADAKYHMDGYLLLG--RELTVVF 113 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~~ 113 (209)
-..|||+||++.+|+++|.++|++||+|..|.|+.+. +|| |||+|.+.++|+.|++.|||..|.| ..|+|+|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3467799999999999999999999999999887542 677 9999999999999999999999998 8999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
++.+.
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98654
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=6.1e-19 Score=131.56 Aligned_cols=81 Identities=33% Similarity=0.632 Sum_probs=74.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
.....++|||+|||+++++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|+.||..|||..|+|+.|.|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4566789999999999999999999999999999999876 38999999999999999999999999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
|+.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997653
No 155
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=125.33 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=69.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCC---CCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT---GEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
.....++|||+|||+++++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++||+.|+ .|+|..|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345678999999999999999999999999999 888888776 7899999999999999999999884 4777777
Q ss_pred EEEEec
Q 028447 110 TVVFAE 115 (209)
Q Consensus 110 ~V~~a~ 115 (209)
.|..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 776554
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=1.3e-18 Score=136.30 Aligned_cols=84 Identities=29% Similarity=0.451 Sum_probs=79.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 157
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=120.16 Aligned_cols=76 Identities=25% Similarity=0.354 Sum_probs=66.6
Q ss_pred CCCCCe-EEEeCCCCCCCHHH----HHHhhccC-CceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe
Q 028447 34 RDLPTS-LLVRNLRHDCRPED----LRGPFGQF-GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (209)
Q Consensus 34 ~~~~~~-i~V~nL~~~~t~~~----L~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 107 (209)
.++..+ |||+|||+.+++++ |.++|.+| |+|..| ++ |+|||+|.+.++|+.|++.|||..|.|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 344555 99999999999887 55899999 599887 22 9999999999999999999999999999
Q ss_pred EEEEEEeccCCC
Q 028447 108 ELTVVFAEENRK 119 (209)
Q Consensus 108 ~i~V~~a~~~~~ 119 (209)
+|+|+||+....
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999987653
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=2.9e-18 Score=132.61 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=80.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|||..|+|+.|.|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 36679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98654
No 159
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.6e-18 Score=124.21 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=66.8
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceE-EEEEecCHHHHHHHHHhhCCceecC--eEEEEEEec
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF-GFVQYIDPADAADAKYHMDGYLLLG--RELTVVFAE 115 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~~a~ 115 (209)
.|||+||++.+++++|+++|++||+|..|.|+.. .|| |||+|.+.++|+.|++.|||..|.| ..|.|+||+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999998642 376 9999999999999999999999988 699999998
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 664
No 160
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=2.4e-18 Score=130.13 Aligned_cols=81 Identities=25% Similarity=0.369 Sum_probs=77.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
...++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|.|+||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred c
Q 028447 115 E 115 (209)
Q Consensus 115 ~ 115 (209)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 161
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=2.9e-18 Score=117.04 Aligned_cols=77 Identities=25% Similarity=0.425 Sum_probs=62.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce--ecCeEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL--LLGRELT 110 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~--i~g~~i~ 110 (209)
...++++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|..|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4567899999999999999999999999999999999875 48999999999999983 45544 5699999
Q ss_pred EEEeccCC
Q 028447 111 VVFAEENR 118 (209)
Q Consensus 111 V~~a~~~~ 118 (209)
|.+|.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99997654
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=1.4e-18 Score=130.83 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC--eEEEEEE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVVF 113 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~~ 113 (209)
.-.+|||+||++.+++++|+++|++||+|..|.|..+ ...+||||+|.+.++|+.|++.|||..|.| ..|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3456899999999999999999999999999998643 247899999999999999999999999966 9999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
++++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98654
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=3e-18 Score=132.26 Aligned_cols=85 Identities=28% Similarity=0.368 Sum_probs=77.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+.+..++|||+|||+++++++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++||+. ++..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 456678999999999999999999999999999999999999999999999999999999999965 9999999999999
Q ss_pred EeccCC
Q 028447 113 FAEENR 118 (209)
Q Consensus 113 ~a~~~~ 118 (209)
++....
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987543
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=4e-18 Score=133.73 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=72.6
Q ss_pred CCCeEEEeCCC-CCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 36 LPTSLLVRNLR-HDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 36 ~~~~i~V~nL~-~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
+.++|||+||+ +.+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 47899999999 899999999999999999999998753 799999999999999999999999999999999999
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7544
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=5.1e-18 Score=130.97 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=75.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
...++|||+|||+.+++++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|++||.. ++..|+|+.|.|.+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4568999999999999999999999999999999999988999999999999999999999976 799999999999999
Q ss_pred ccCCC
Q 028447 115 EENRK 119 (209)
Q Consensus 115 ~~~~~ 119 (209)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87654
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=1.5e-18 Score=130.67 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=76.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||+|||+.+++++|.++|++||.|..+.|+.++.+|.++|||||+|.+.++|++|++ |++..|+|+.|.|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999998899999999999999999999997 89999999999999997
Q ss_pred cC
Q 028447 116 EN 117 (209)
Q Consensus 116 ~~ 117 (209)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=4.6e-18 Score=133.82 Aligned_cols=80 Identities=24% Similarity=0.365 Sum_probs=74.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||+|||+.+++++|.++|.+||.|..|.|+.+. +..+|||||+|.+.++|++||+.|||..|+|+.|.|++|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999999874 4468999999999999999999999999999999999997
Q ss_pred cC
Q 028447 116 EN 117 (209)
Q Consensus 116 ~~ 117 (209)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 54
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=4.2e-18 Score=115.17 Aligned_cols=73 Identities=19% Similarity=0.361 Sum_probs=67.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccC----C-------ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~----G-------~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
..+.++|||+|||+++++++|+++|.+| | .|..+.++.+ +|||||+|.+.++|++|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3457899999999999999999999999 8 8999998855 799999999999999999 99999
Q ss_pred eecCeEEEEEE
Q 028447 103 LLLGRELTVVF 113 (209)
Q Consensus 103 ~i~g~~i~V~~ 113 (209)
.|+|+.|.|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999874
No 169
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=115.75 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=66.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
.+.++|||+|||+++++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45789999999999999999999999999999999865 489999999999999865322 35569999999998
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=5.9e-18 Score=122.03 Aligned_cols=77 Identities=29% Similarity=0.424 Sum_probs=70.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|| ++++++|+++|++||.|..|.|+ ..+|||||+|.+.++|++||+.|||..|+|+.|.|+|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 69999999999999999999987 3479999999999999999999999999999999999
Q ss_pred eccCC
Q 028447 114 AEENR 118 (209)
Q Consensus 114 a~~~~ 118 (209)
+.+..
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98654
No 171
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.2e-17 Score=125.68 Aligned_cols=81 Identities=31% Similarity=0.484 Sum_probs=76.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC--eEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTV 111 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V 111 (209)
....++|||+|||..+++++|.++|++||.|..+.|+.+..++.++|||||+|.+.++|++|++.|||..|.| .+|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3457899999999999999999999999999999999998899999999999999999999999999999988 99999
Q ss_pred EEe
Q 028447 112 VFA 114 (209)
Q Consensus 112 ~~a 114 (209)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 172
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=1.7e-17 Score=116.65 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCC-----CCCHHHHHHhhccCCceEEEEeecCCCC-CCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 35 DLPTSLLVRNLRH-----DCRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 35 ~~~~~i~V~nL~~-----~~t~~~L~~~f~~~G~i~~~~i~~~~~~-g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
.+..+|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5678999999963 2368999999999999999999988654 678999999999999999999999999999999
Q ss_pred EEEEEecc
Q 028447 109 LTVVFAEE 116 (209)
Q Consensus 109 i~V~~a~~ 116 (209)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=5.8e-18 Score=132.59 Aligned_cols=83 Identities=27% Similarity=0.395 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||+|||+++++++|+++|+.||.|..|.|+.++.++..+|||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 174
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.4e-17 Score=124.82 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=74.1
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 117 (209)
.+|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999887 4678999999999999999999999999999999999998755
Q ss_pred C
Q 028447 118 R 118 (209)
Q Consensus 118 ~ 118 (209)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=1.9e-17 Score=124.23 Aligned_cols=80 Identities=29% Similarity=0.422 Sum_probs=74.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe--EEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR--ELTVV 112 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~--~i~V~ 112 (209)
...++|||+|||..+++++|+++|++||.|..+.|+.+..+|.++|||||+|.+.++|++|++.|||..|+|+ +|.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999999996 48888
Q ss_pred Ee
Q 028447 113 FA 114 (209)
Q Consensus 113 ~a 114 (209)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=4e-17 Score=133.22 Aligned_cols=84 Identities=23% Similarity=0.476 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHH----HhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 107 (209)
++..+.++|||+|||+++++++|+ ++|.+||.|..|.|+. ++..+|||||+|.+.++|+.||+.|||..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 356778999999999999999966 8999999999998875 678899999999999999999999999999999
Q ss_pred EEEEEEeccCC
Q 028447 108 ELTVVFAEENR 118 (209)
Q Consensus 108 ~i~V~~a~~~~ 118 (209)
.|.|+|+....
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997544
No 177
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=9.6e-18 Score=133.98 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=71.5
Q ss_pred CCCCCCeEEEeCCCCCC---------CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce
Q 028447 33 GRDLPTSLLVRNLRHDC---------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (209)
Q Consensus 33 ~~~~~~~i~V~nL~~~~---------t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 103 (209)
.....++|||+||+..+ ++++|.++|++||+|..|.|+.+ +|||||+|.+.++|+.|+++|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35668899999999998 79999999999999999999854 7999999999999999999999999
Q ss_pred e------------cCeEEEEEEeccCCC
Q 028447 104 L------------LGRELTVVFAEENRK 119 (209)
Q Consensus 104 i------------~g~~i~V~~a~~~~~ 119 (209)
| .|..|.|.||+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999986543
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=2.9e-17 Score=124.27 Aligned_cols=80 Identities=25% Similarity=0.401 Sum_probs=73.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec---CeEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL---GRELTV 111 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~~i~V 111 (209)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|++|++.|||..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 457899999999999999999999999999999999886 6889999999999999999999999998776 489999
Q ss_pred EEec
Q 028447 112 VFAE 115 (209)
Q Consensus 112 ~~a~ 115 (209)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=3.3e-17 Score=124.36 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++||+.|||..|+|+.|.|+|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3457899999999999999999999999988766 45788899999999999999999999999999999999999
Q ss_pred eccC
Q 028447 114 AEEN 117 (209)
Q Consensus 114 a~~~ 117 (209)
|.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9764
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=3.8e-17 Score=123.59 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=75.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCC--CcceEEEEEecCHHHHHHHHHhhCCceec---CeEEE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTG--EPRGFGFVQYIDPADAADAKYHMDGYLLL---GRELT 110 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~~i~ 110 (209)
..++|||+|||+++++++|.++|.+||.|..|.|+.++.++ .++|||||+|.+.++|+.|++.|++..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35799999999999999999999999999999999998776 88999999999999999999999998776 67888
Q ss_pred EEEeccCC
Q 028447 111 VVFAEENR 118 (209)
Q Consensus 111 V~~a~~~~ 118 (209)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876544
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=7.5e-17 Score=125.32 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=71.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 116 (209)
.++|||+|||+++++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||..++ ..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999876 58899999999999999999997654 699999999999764
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=2.7e-17 Score=123.79 Aligned_cols=79 Identities=25% Similarity=0.483 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
+.++|||+|||+++++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999998999999999999999999999974 578999999998875
Q ss_pred c
Q 028447 116 E 116 (209)
Q Consensus 116 ~ 116 (209)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 3
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=7.1e-17 Score=132.38 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=76.5
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccCCceEEEEeecCCC-CCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 34 RDLPTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~-~t~~~L~~~f~~~G~i~~~~i~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
....++|||+|||+. +++++|.++|.+||.|..|.|+.+.. ||.++|||||+|.+.++|+.|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999998876 5899999999999999999999 99999999999999
Q ss_pred EEeccC
Q 028447 112 VFAEEN 117 (209)
Q Consensus 112 ~~a~~~ 117 (209)
.||.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999865
No 184
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-16 Score=111.14 Aligned_cols=81 Identities=26% Similarity=0.430 Sum_probs=69.3
Q ss_pred CCCCCeEEEeCCCCCCC-----------HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 34 RDLPTSLLVRNLRHDCR-----------PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t-----------~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
..+..+|+|.||..... +++|+++|.+||.|..|.|+ +. .++|||||+|.+.++|++||+.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 35678999999954432 57999999999999999663 33 36899999999999999999999999
Q ss_pred eecCeEEEEEEeccCC
Q 028447 103 LLLGRELTVVFAEENR 118 (209)
Q Consensus 103 ~i~g~~i~V~~a~~~~ 118 (209)
.|+|+.|.|+++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999997643
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.3e-16 Score=130.29 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=71.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec-CeEEEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVVF 113 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V~~ 113 (209)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|++||+.|||..|+ |+.|+|+|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456889999999999999999999999999999998654 589999999999999999999999999 99999999
Q ss_pred ec
Q 028447 114 AE 115 (209)
Q Consensus 114 a~ 115 (209)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=4.8e-17 Score=129.34 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 34 RDLPTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
..+.++|||+|||+ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++||+.|||..|.|+.|.|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999 99999999999999999999999775 7899999999999999999999999999999999
Q ss_pred EeccC
Q 028447 113 FAEEN 117 (209)
Q Consensus 113 ~a~~~ 117 (209)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99755
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=2.3e-16 Score=128.89 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=78.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
..++|||+|||+.+++++|.++|..||.|..+.|+.+..+|.++|||||+|.+.++|+.|+..|+|..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=1.8e-16 Score=129.46 Aligned_cols=86 Identities=21% Similarity=0.218 Sum_probs=79.4
Q ss_pred CCCCCeEEEeCCCCCC-CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 34 RDLPTSLLVRNLRHDC-RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~-t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
....++|||+|||+.+ ++++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567899999999995 999999999999999999999886 78899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 028447 113 FAEENRKK 120 (209)
Q Consensus 113 ~a~~~~~~ 120 (209)
|+.++...
T Consensus 260 ~a~~~~~~ 267 (284)
T 3smz_A 260 FCAPGPPG 267 (284)
T ss_dssp ECCSSSCH
T ss_pred EecCCCcc
Confidence 99876653
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=2.3e-17 Score=125.24 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEE
Q 028447 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (209)
Q Consensus 32 ~~~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 111 (209)
.+....++|||+|||+++++++|+++|..||.|.. .++.+..++.++|||||+|.+.++|++|| .|||..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 45677899999999999999999999999998766 33445557788999999999999999999 59999999999999
Q ss_pred EEeccCC
Q 028447 112 VFAEENR 118 (209)
Q Consensus 112 ~~a~~~~ 118 (209)
.++....
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9997654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=123.91 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=72.2
Q ss_pred CCeEEEeCCCC-CCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 37 PTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 37 ~~~i~V~nL~~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
.++|||+|||+ .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|+.||+.|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999999775 7899999999999999999999999999999999997
Q ss_pred cCC
Q 028447 116 ENR 118 (209)
Q Consensus 116 ~~~ 118 (209)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=2.7e-16 Score=123.27 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=69.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCce--EEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe----E
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRL--KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR----E 108 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i--~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~----~ 108 (209)
.+.++|||+|||+.+++++|+++|++||.| ..+.|+.+. +...|||||+|.+.++|++||..|||.+|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456789999999999999999999999999 888888764 45569999999999999999999999999886 6
Q ss_pred EEEEEe
Q 028447 109 LTVVFA 114 (209)
Q Consensus 109 i~V~~a 114 (209)
|.|+||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777776
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=7.1e-16 Score=124.89 Aligned_cols=77 Identities=34% Similarity=0.567 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
....++|||+|||+++|+++|.++|..||.|..|.|+.+ +|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 455679999999999999999999999999999999754 79999999999999999999999999999999999
Q ss_pred ecc
Q 028447 114 AEE 116 (209)
Q Consensus 114 a~~ 116 (209)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=122.08 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=72.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec-CeEEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVV 112 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V~ 112 (209)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+.+. +|||||+|.+.++|++|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999987543 789999999999999999999999999 9999999
Q ss_pred EeccC
Q 028447 113 FAEEN 117 (209)
Q Consensus 113 ~a~~~ 117 (209)
|++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99754
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.64 E-value=6.9e-16 Score=108.42 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=70.6
Q ss_pred CCCCeEEEeCC--CCCCC--------HHHHHHhhccCCceEEEEeecCCCC--CCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 35 DLPTSLLVRNL--RHDCR--------PEDLRGPFGQFGRLKDIYLPRDYYT--GEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 35 ~~~~~i~V~nL--~~~~t--------~~~L~~~f~~~G~i~~~~i~~~~~~--g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
.+..+|+|.|+ +.++. +++|+++|++||.|..|.|+.+..+ +.++|||||+|.+.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35778999998 33332 3689999999999999999988754 357899999999999999999999999
Q ss_pred eecCeEEEEEEecc
Q 028447 103 LLLGRELTVVFAEE 116 (209)
Q Consensus 103 ~i~g~~i~V~~a~~ 116 (209)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=4.6e-16 Score=123.64 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=71.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec-CeEEEEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVV 112 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V~ 112 (209)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+.+. +|||||+|.+.++|++||+.|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999986532 689999999999999999999999999 9999999
Q ss_pred EeccC
Q 028447 113 FAEEN 117 (209)
Q Consensus 113 ~a~~~ 117 (209)
|++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99753
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.63 E-value=1.3e-15 Score=109.12 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCC--CC---CHHHHHHhhccCCceEEEEeecCCC----CCCcceEEEEEecCHHHHHHHHHhhCCceecC
Q 028447 36 LPTSLLVRNLRH--DC---RPEDLRGPFGQFGRLKDIYLPRDYY----TGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 106 (209)
Q Consensus 36 ~~~~i~V~nL~~--~~---t~~~L~~~f~~~G~i~~~~i~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 106 (209)
+..+|+|.||-. ++ .+++|+++|++||+|..|.|+.+.. ++..+||+||+|.+.++|++|++.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 22 3689999999999999999998764 35677999999999999999999999999999
Q ss_pred eEEEEEEecc
Q 028447 107 RELTVVFAEE 116 (209)
Q Consensus 107 ~~i~V~~a~~ 116 (209)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.63 E-value=1.7e-16 Score=111.37 Aligned_cols=72 Identities=13% Similarity=0.300 Sum_probs=62.9
Q ss_pred EeCCCCCCCHHHHHHhh------------ccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 42 VRNLRHDCRPEDLRGPF------------GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 42 V~nL~~~~t~~~L~~~f------------~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
+.||++.+++++|+++| ++||+|..|.|+.+. ++.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777766665 999999999999876 47889999999999999999999999999999999
Q ss_pred EEEEe
Q 028447 110 TVVFA 114 (209)
Q Consensus 110 ~V~~a 114 (209)
.|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=1.1e-15 Score=125.24 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=71.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEe
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 114 (209)
..++|||+|||+.+++++|.++|..|| .|..|.|+.+.. |.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999998764 778999999999999999999999999999999999998
Q ss_pred ccCC
Q 028447 115 EENR 118 (209)
Q Consensus 115 ~~~~ 118 (209)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 7654
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=2e-15 Score=122.24 Aligned_cols=81 Identities=30% Similarity=0.356 Sum_probs=73.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC-Cceec---CeEEEE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD-GYLLL---GRELTV 111 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~i~---g~~i~V 111 (209)
..++|||+|||..+++++|.++|..||.|..|.|+.+ .+|.++|||||+|.+.++|..||..|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999988 589999999999999999999999995 45554 899999
Q ss_pred EEeccC
Q 028447 112 VFAEEN 117 (209)
Q Consensus 112 ~~a~~~ 117 (209)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=1.8e-15 Score=114.21 Aligned_cols=75 Identities=19% Similarity=0.370 Sum_probs=67.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccC----C-------ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~----G-------~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
+.++|||+|||+++++++|+++|++| | .|..+.+..+ +|||||+|.+.++|++|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 6777777643 799999999999999999 8999999
Q ss_pred cCeEEEEEEeccC
Q 028447 105 LGRELTVVFAEEN 117 (209)
Q Consensus 105 ~g~~i~V~~a~~~ 117 (209)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999997654
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=2.5e-15 Score=115.96 Aligned_cols=76 Identities=17% Similarity=0.370 Sum_probs=66.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccC----C-------ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~----G-------~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
..++|||+|||+.+++++|.++|..| | .|..+.+. ..+|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 56666554 34899999999999999999 8999999
Q ss_pred cCeEEEEEEeccCC
Q 028447 105 LGRELTVVFAEENR 118 (209)
Q Consensus 105 ~g~~i~V~~a~~~~ 118 (209)
+|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987543
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=4.1e-15 Score=124.62 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=66.3
Q ss_pred CCCCCeEEEeC--CCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec---Ce-
Q 028447 34 RDLPTSLLVRN--LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL---GR- 107 (209)
Q Consensus 34 ~~~~~~i~V~n--L~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~- 107 (209)
.++..+|||+| |++.+++++|+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||.++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56788999999 578999999999999999999988764 3799999999999999999999999883 44
Q ss_pred -EEEEEEec
Q 028447 108 -ELTVVFAE 115 (209)
Q Consensus 108 -~i~V~~a~ 115 (209)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67788774
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.1e-14 Score=98.39 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCeEEEeCCC-------CCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 37 PTSLLVRNLR-------HDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 37 ~~~i~V~nL~-------~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
...|.|.-.. ..+++++|+++|.+||+|..|.|+. .++|||||+|.+.++|+.||+.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5567666443 4589999999999999999999983 5689999999999999999988655 679999
Q ss_pred EEEEeccCCC
Q 028447 110 TVVFAEENRK 119 (209)
Q Consensus 110 ~V~~a~~~~~ 119 (209)
.|+|+.++..
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999986653
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=7.6e-14 Score=99.29 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=65.9
Q ss_pred CCCCeEEEeCCCCCC----------CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 35 DLPTSLLVRNLRHDC----------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~----------t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
.+..+|.|.|+-... .+++|+++|++||.|..|.|+.+. .+|||||+|.+.++|++|++.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456788899873321 136889999999999999987653 489999999999999999999999999
Q ss_pred cCeEEEEEEecc
Q 028447 105 LGRELTVVFAEE 116 (209)
Q Consensus 105 ~g~~i~V~~a~~ 116 (209)
+|+.|.|+|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.6e-13 Score=95.31 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=71.9
Q ss_pred CCCCCCCCCCeEEEeCCCCC-CCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC-HHHHHHHHHhhC--Ccee
Q 028447 29 YGGRGRDLPTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID-PADAADAKYHMD--GYLL 104 (209)
Q Consensus 29 ~~~~~~~~~~~i~V~nL~~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~l~--g~~i 104 (209)
.|+-.-..++.|||+||++. ++.++|+++|.+||+|..|.|+.+. ..|||.|.+ .++|+.|++.|| +..|
T Consensus 10 ~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 10 HGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 34556678999999999999 9999999999999999999999774 359999999 899999999995 6789
Q ss_pred cCeEEEEEEecc
Q 028447 105 LGRELTVVFAEE 116 (209)
Q Consensus 105 ~g~~i~V~~a~~ 116 (209)
+|..++|++...
T Consensus 84 ~g~~~~~evL~G 95 (121)
T 1owx_A 84 RNKEVTWEVLEG 95 (121)
T ss_dssp TSSSEEEEECCH
T ss_pred eCcEEEEEECCC
Confidence 999999987653
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=88.00 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=63.7
Q ss_pred CCCeEEEeCCCC----CCCH----HHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCe
Q 028447 36 LPTSLLVRNLRH----DCRP----EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (209)
Q Consensus 36 ~~~~i~V~nL~~----~~t~----~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 107 (209)
+..||+|.-++. ++.. .+|.+.|.+||+|..+.|+.+. +||+|.+.++|.+||+ |||..|+|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 456888877662 2323 6789999999999999999653 8999999999999997 999999999
Q ss_pred EEEEEEeccCCCC
Q 028447 108 ELTVVFAEENRKK 120 (209)
Q Consensus 108 ~i~V~~a~~~~~~ 120 (209)
.|+|+++++....
T Consensus 77 ~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 77 TITIALKSPSGPS 89 (91)
T ss_dssp EEEEEECCCSSCS
T ss_pred EEEEEeCCCCccc
Confidence 9999999877643
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.3e-11 Score=83.56 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=60.8
Q ss_pred CCCCeEEEeCCCCC------CCH---HHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceec
Q 028447 35 DLPTSLLVRNLRHD------CRP---EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (209)
Q Consensus 35 ~~~~~i~V~nL~~~------~t~---~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 105 (209)
++..||+|.-++.. ..+ .+|.+.|.+||+|..+.|+.+. +||+|.+.++|.+||+ |||..|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 35678999887642 221 5688999999999999999663 9999999999999997 9999999
Q ss_pred CeEEEEEEec
Q 028447 106 GRELTVVFAE 115 (209)
Q Consensus 106 g~~i~V~~a~ 115 (209)
|+.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.14 E-value=1.1e-10 Score=92.02 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=65.7
Q ss_pred CCeEEEeCCC-----CCCCHHHHHHhhccCCceEEEEeecCC----CCCCcceEEEEEecCHHHHHHHHHhhCCceecCe
Q 028447 37 PTSLLVRNLR-----HDCRPEDLRGPFGQFGRLKDIYLPRDY----YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (209)
Q Consensus 37 ~~~i~V~nL~-----~~~t~~~L~~~f~~~G~i~~~~i~~~~----~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 107 (209)
...+.+.|+- ..-.+++|.+.|.+||.|..+.|+.+. .++...|++||+|.+.++|++|++.|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3445555542 223467899999999999999998544 4458899999999999999999999999999999
Q ss_pred EEEEEEecc
Q 028447 108 ELTVVFAEE 116 (209)
Q Consensus 108 ~i~V~~a~~ 116 (209)
.|.|.|+..
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=5.4e-09 Score=72.26 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=67.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccC-----CceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEE
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQF-----GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~-----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 109 (209)
+...+|-|-|||..+++..|..+++++ |.|..|.++.| -+-|+|+|.+...|-+|.-+|+|.+|+|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 457889999999999999999999999 99999999977 4669999999999999999999999999999
Q ss_pred EEEEe
Q 028447 110 TVVFA 114 (209)
Q Consensus 110 ~V~~a 114 (209)
.|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=2.4e-07 Score=63.72 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=66.5
Q ss_pred CCCCCeEEEeCCCCCC-C----HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 34 RDLPTSLLVRNLRHDC-R----PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~-t----~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
.+.+++|+|+||+.++ . .+.++++|..|+++....+.+. -.-..|.|.+.++|.+|-..||+..|+|..
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCce
Confidence 3578999999998865 2 2578899999999988877744 345789999999999999999999999999
Q ss_pred EEEEEeccCC
Q 028447 109 LTVVFAEENR 118 (209)
Q Consensus 109 i~V~~a~~~~ 118 (209)
|+|-++.+..
T Consensus 76 ~r~YFgq~~~ 85 (104)
T 1wey_A 76 MKLYFAQTLH 85 (104)
T ss_dssp CEEECCCCSS
T ss_pred eEEEecCCCC
Confidence 9999987443
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.31 E-value=9.3e-06 Score=54.73 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=63.9
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCC--cceEEEEEecCHHHHHHHHHhhCCceecC-----eEEE
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE--PRGFGFVQYIDPADAADAKYHMDGYLLLG-----RELT 110 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~--~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-----~~i~ 110 (209)
++|.|.+||+.+|++++.+.+..+.++....++..+.+.. ...-|||.|.+.+++....+.++|+.|.+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 6899999999999999999999998887777765554332 34679999999999999999999987743 2456
Q ss_pred EEEecc
Q 028447 111 VVFAEE 116 (209)
Q Consensus 111 V~~a~~ 116 (209)
|++|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 777753
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1e-05 Score=55.39 Aligned_cols=74 Identities=22% Similarity=0.117 Sum_probs=60.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhcc-----CCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQ-----FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~-----~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
....++|.|.|||..+.++.|+-+|++ -|+|..+... .+-|+|+|.+.+.|+.+|+. ..+.|++..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--------~~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--------GCGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--------TTEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--------CCcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 345789999999999999999999987 2588888775 25689999999999999843 467888999
Q ss_pred EEEEEecc
Q 028447 109 LTVVFAEE 116 (209)
Q Consensus 109 i~V~~a~~ 116 (209)
|.|....+
T Consensus 76 LsV~P~~~ 83 (104)
T 2dhx_A 76 LSLRPAPP 83 (104)
T ss_dssp CEEEECCC
T ss_pred EEEEcCCC
Confidence 99876543
No 213
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.03 E-value=2.6e-05 Score=52.91 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=60.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCC--cceEEEEEecCHHHHHHHHHhhCCceecC-----eE
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE--PRGFGFVQYIDPADAADAKYHMDGYLLLG-----RE 108 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~--~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-----~~ 108 (209)
-.-+|.|..||+.+||+++.+.+..+-++....++..+.+.+ ...-|||.|.+.+++....+.++|..|-+ .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356899999999999999998888776655444444333322 23468999999999999999999987643 35
Q ss_pred EEEEEec
Q 028447 109 LTVVFAE 115 (209)
Q Consensus 109 i~V~~a~ 115 (209)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 6677775
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.03 E-value=2.5e-05 Score=52.85 Aligned_cols=56 Identities=23% Similarity=0.292 Sum_probs=45.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
..+.++| ++|.++...||.++|..||.| .|.++.| .-|||.|.+.+.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3556677 999999999999999999954 3555544 469999999999999998763
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=2.8e-05 Score=54.80 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecC-eEEEEE
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG-RELTVV 112 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-~~i~V~ 112 (209)
....+.|.|.++|... ...|...|++||+|.+.... ....+..|.|.+..+|++|| ..||..|+| ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEE
Confidence 3457789999999986 56677889999999988763 12578999999999999999 569999985 556666
Q ss_pred Ee
Q 028447 113 FA 114 (209)
Q Consensus 113 ~a 114 (209)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.79 E-value=3.4e-05 Score=52.36 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=44.9
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
+.++| ++|.++...||.++|..||. ..|.++.| .-|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999994 44666644 469999999999999998764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.59 E-value=9.4e-05 Score=52.83 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=55.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEE-Eeec------------CCCCC-CcceEEEEEecCHHHHHHHHHhhC
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDI-YLPR------------DYYTG-EPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~-~i~~------------~~~~g-~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
+..+-|.|.++|...... |.+.|++||.|.+- .+.. .+... ...++..|+|.+..+|++|| ..|
T Consensus 5 ~~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LEN 82 (132)
T ss_dssp ---CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTT
T ss_pred cCceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhC
Confidence 446778899998876554 56779999998762 1111 00001 13567899999999999999 669
Q ss_pred CceecCeEEEEEEec
Q 028447 101 GYLLLGRELTVVFAE 115 (209)
Q Consensus 101 g~~i~g~~i~V~~a~ 115 (209)
|..|+|..|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999888787764
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.73 E-value=0.00083 Score=58.10 Aligned_cols=55 Identities=9% Similarity=0.274 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHH
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 97 (209)
...|||. ++..+++.+|.++|.+||.|..+.+-.+. ..||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 3689997 79999999999999999999999887654 4899999999998887763
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.51 E-value=0.00079 Score=49.07 Aligned_cols=41 Identities=20% Similarity=0.063 Sum_probs=36.6
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhh-CCceecCeEEEEEEecc
Q 028447 75 TGEPRGFGFVQYIDPADAADAKYHM-DGYLLLGRELTVVFAEE 116 (209)
Q Consensus 75 ~g~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~i~V~~a~~ 116 (209)
.....|+++|+|.+.++|++|++.| ||..|+| .|.|.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3456899999999999999999999 9999999 999998764
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.44 E-value=0.0022 Score=46.92 Aligned_cols=34 Identities=15% Similarity=-0.006 Sum_probs=26.9
Q ss_pred EEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 67 IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 67 ~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
+.|+.+. ...+|||||+|.+.++|++|++.+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4455543 357899999999999999999887753
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.65 E-value=0.094 Score=45.91 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=45.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
+..++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4566776 99999999999999999954 4555533 4699999999999999998853
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=94.43 E-value=0.049 Score=34.73 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=43.1
Q ss_pred eEEEeC-CCCCCCHHHHHHhhccCC-----ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEE
Q 028447 39 SLLVRN-LRHDCRPEDLRGPFGQFG-----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (209)
Q Consensus 39 ~i~V~n-L~~~~t~~~L~~~f~~~G-----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 112 (209)
+|||.. -...+...+|..++..-+ .|-.|.|. ..|.||+.. .+.|..+++.|++..+.|+.|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEEC-TTCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEEC-HHHHHHHHHHhccccCcCceEEEE
Confidence 566632 233466677777776544 45566665 457899986 456778899999999999999998
Q ss_pred Eec
Q 028447 113 FAE 115 (209)
Q Consensus 113 ~a~ 115 (209)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=93.48 E-value=0.4 Score=31.70 Aligned_cols=70 Identities=9% Similarity=0.044 Sum_probs=52.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc-------eecCe
Q 028447 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY-------LLLGR 107 (209)
Q Consensus 35 ~~~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-------~i~g~ 107 (209)
.+.+-|-|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++...||+.|-++ +|.|+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 457778889999999998887777777766677776 467999999999999998876332 34565
Q ss_pred EEEEE
Q 028447 108 ELTVV 112 (209)
Q Consensus 108 ~i~V~ 112 (209)
.+.|-
T Consensus 82 icdvi 86 (129)
T 4eyt_A 82 ICDVI 86 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 55443
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=83.40 E-value=2.7 Score=35.89 Aligned_cols=6 Identities=0% Similarity=-0.025 Sum_probs=2.1
Q ss_pred HHHHHH
Q 028447 90 ADAADA 95 (209)
Q Consensus 90 ~~a~~A 95 (209)
++...+
T Consensus 117 ~~L~~~ 122 (437)
T 3pgw_S 117 SKLRRE 122 (437)
T ss_pred HHHHHH
Confidence 333333
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=78.52 E-value=6.3 Score=29.18 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=33.8
Q ss_pred CCeEEEeCCCC-C--------CCHHHHHHhh--ccCCceEEEEeecCCCCCCcceEEEEEecC
Q 028447 37 PTSLLVRNLRH-D--------CRPEDLRGPF--GQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88 (209)
Q Consensus 37 ~~~i~V~nL~~-~--------~t~~~L~~~f--~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 88 (209)
|-+++|.|++. . ....+|.+.| ..|..+....+. ++ ..+.|+|.|+|.+
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~-~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLW-NY--LGHSGTAIVEFNK 71 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEE-CS--SBEEEEEEEECCS
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecc-cC--CCCceeEEEEecC
Confidence 34667889887 2 3347889877 899887644443 32 2457899999985
No 226
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=76.00 E-value=7.5 Score=25.46 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=27.1
Q ss_pred ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 63 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
+|..+.++.. ..||.||++...++...+|+.+.|.
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 3556666532 4899999999999988898887774
No 227
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=73.91 E-value=11 Score=22.70 Aligned_cols=55 Identities=9% Similarity=-0.084 Sum_probs=40.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
..+|.|.++.=..-...|+..+.. ..|..+.+... .+-+.|+|.+.++...+|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 346888898877778889999988 77777766533 56788888866666777755
No 228
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=71.43 E-value=0.82 Score=31.12 Aligned_cols=20 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCCCeEEEeCCCCCCCHHH
Q 028447 34 RDLPTSLLVRNLRHDCRPED 53 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~ 53 (209)
....++|||+|||+.+|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34567899999999998763
No 229
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=70.26 E-value=0.97 Score=32.73 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=18.3
Q ss_pred HHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec
Q 028447 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87 (209)
Q Consensus 52 ~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 87 (209)
+||.++|...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 5667788888887765443 789999875
No 230
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.87 E-value=25 Score=22.78 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=37.6
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
..|+..+...++..+|++.++. |+ +|..|..+.-+ ...--|||++..-.+|.+....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~---~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP---RGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT---TSCEEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC---CCceEEEEEcCCCCcHHHHHHh
Confidence 4556667888999999888876 44 55555444322 1234599999877777665443
No 231
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=58.51 E-value=22 Score=26.89 Aligned_cols=27 Identities=4% Similarity=-0.070 Sum_probs=23.4
Q ss_pred cceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 78 PRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 78 ~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
-+||.|||=.+..++..||+.+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 489999999999999999988887643
No 232
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=54.90 E-value=30 Score=20.37 Aligned_cols=55 Identities=5% Similarity=-0.026 Sum_probs=38.6
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 99 (209)
+|.|.|+.-..-...|+..+.....|..+.+... .+-+.|+|. +.++...+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 5778888766667788888888877776666533 456788885 456677777653
No 233
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=54.78 E-value=24 Score=23.77 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=26.7
Q ss_pred ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 63 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
.|..+....+ .+||-|||=.+..++..||+.+.+.
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 4666655533 3899999999999999999776554
No 234
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=51.64 E-value=20 Score=20.80 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=37.3
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec---CHHHHHHHHHh
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYH 98 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~---~~~~a~~Ai~~ 98 (209)
.++.|.|+.-..-...|+..+.....|..+.+... .+-+.|+|. +.++...+|..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35778888766667888888888877777766543 345778774 34555666654
No 235
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=55.53 E-value=3.4 Score=28.05 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhccCCceEEEEeecCCCCCCc-ceEEEEEecCHHHHHHHHHhhCCceecCeE
Q 028447 48 DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP-RGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (209)
Q Consensus 48 ~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~-~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 108 (209)
...+++|..|+.+.+ +..+.+.....+|+. --.-|-.|.+.++|..|+..|....-...+
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~~P 93 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNP 93 (106)
Confidence 345667777777775 344544433223322 112345889999999999888765433333
No 236
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=48.66 E-value=7.2 Score=31.01 Aligned_cols=33 Identities=12% Similarity=-0.057 Sum_probs=25.2
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEee
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLP 70 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~ 70 (209)
..++|+|||+.++...|..+++....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 467899999999999999999765555554444
No 237
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=47.19 E-value=15 Score=29.01 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=24.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEe
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYL 69 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i 69 (209)
..-+.|+|||+.++...|..++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356789999999999999999876 55544433
No 238
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=46.44 E-value=34 Score=24.56 Aligned_cols=57 Identities=7% Similarity=0.221 Sum_probs=34.8
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
..||.-+...++..+|++.++. |+ .|..|..+.-+ . ..--|||.+....+|.+....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~--g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-T--GNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-T--SCEEEEEEECSSSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-C--CcEEEEEEcCCCCcHHHHHHh
Confidence 4455566778888888877765 34 45555444322 1 234589999876666655433
No 239
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=45.54 E-value=18 Score=32.44 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHhh----ccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 45 LRHDCRPEDLRGPF----GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 45 L~~~~t~~~L~~~f----~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
++.+.+--||..+| ..+|-|+++.|...+.- ....+++|.|.+.++|..|+..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P-~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTP-EYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCC-ccccccccccCCchhhhhhHHHH
Confidence 34444445677777 36788888877654422 33567889999999998888665
No 240
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=45.30 E-value=41 Score=21.68 Aligned_cols=55 Identities=7% Similarity=0.151 Sum_probs=35.6
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 96 (209)
..|+..+...++..+|++.++. |+ +|..|..+.-+ ...--|||++..-++|....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~---~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM---DGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT---TSSEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC---CCceEEEEEECCCCcHHHHH
Confidence 3456677888999999888875 44 55565444322 12446899998766655443
No 241
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=45.28 E-value=73 Score=21.95 Aligned_cols=47 Identities=9% Similarity=-0.039 Sum_probs=38.2
Q ss_pred HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
.+++.+.+..+-+|..|..+ +|...-++.|.+.+.++.+..+..|.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRI----AGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEE----ESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeee----eCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 56777888889999999877 455566788999999999999988876
No 242
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=44.80 E-value=40 Score=18.77 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=34.3
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec---CHHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~---~~~~a~~Ai~~l 99 (209)
++.|.|+.-......|+..+.....|..+.+... .+.+.|+|. +.++...++..+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 3556666555456778888888777777766533 455777775 344555555443
No 243
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=44.09 E-value=40 Score=23.97 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=34.3
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
..||.-+...++..+|++.++. |+ .|..|..+.-+ . ..--|||.+..-.+|.+....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~--g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-N--GTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-T--SCEEEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-C--CceEEEEEeCCCCcHHHHHHh
Confidence 3455566778888888777765 34 45555444322 1 234589999876666655433
No 244
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=43.35 E-value=33 Score=21.46 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=38.0
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 99 (209)
.+|.|.++.-......|+..+...-.|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 45777777655556778888888877877766543 456788885 345666677665
No 245
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=42.88 E-value=39 Score=21.97 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=33.2
Q ss_pred EEEeCCCCCCCHHHHHHhhcc-CC----ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 40 LLVRNLRHDCRPEDLRGPFGQ-FG----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 40 i~V~nL~~~~t~~~L~~~f~~-~G----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
|.+..++..++-++|.+.+.. |+ +...++++ | +.| -+|++.+.++.+.|+..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~-D-EeG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI-D-EEG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC-C-SSS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE-C-CCC-----CcccccCHHHHHHHHHHH
Confidence 556667888998877655432 22 22233443 2 223 368899999999998743
No 246
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=42.49 E-value=19 Score=28.03 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=22.2
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEE
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDI 67 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~ 67 (209)
..+.|+|||+.++...|..++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 357899999999998888888754334433
No 247
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=42.48 E-value=35 Score=28.57 Aligned_cols=51 Identities=12% Similarity=-0.045 Sum_probs=35.9
Q ss_pred eEEEeCCCCCC----CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 39 SLLVRNLRHDC----RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 39 ~i~V~nL~~~~----t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
--+||||.... ....+.++.++||.|..+.+. +.-+|...+.+.++.++..
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~ 70 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK 70 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh
Confidence 34689886542 245677888899999888764 2346677788988888743
No 248
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=40.87 E-value=33 Score=22.62 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHhhc-cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 44 NLRHDCRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
.++.-+.-++|+.... .||...++.++.+ .-.|-..+.+|..+||+.|+-
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 4667778778776554 6898888887733 267888999999999987754
No 249
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=40.53 E-value=49 Score=18.67 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=34.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC---HHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID---PADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~---~~~a~~Ai~~l 99 (209)
++.|.|+.-......|+..+.....|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 5677777655556778888888777777766533 4567778763 34445555443
No 250
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=39.43 E-value=15 Score=24.48 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHhh-ccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 44 NLRHDCRPEDLRGPF-GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 44 nL~~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
.++.-+.-++|+.-. ..||.-.++..+.+ -..|-..+.+|..+||+.|+-.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC
Confidence 466777877776544 46888877777622 2678889999999999887654
No 251
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=39.33 E-value=53 Score=21.27 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=15.8
Q ss_pred cceEEEEEecCHHHHHHHH
Q 028447 78 PRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 78 ~~g~afV~f~~~~~a~~Ai 96 (209)
......|+|.+.+.|++++
T Consensus 52 ~~~~viieFps~~aa~a~y 70 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWY 70 (94)
T ss_dssp CSEEEEEEESSHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHH
Confidence 4567899999999998775
No 252
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=39.23 E-value=52 Score=18.57 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=36.6
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC---HHHHHHHHHh
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID---PADAADAKYH 98 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~---~~~a~~Ai~~ 98 (209)
.++.|.|+.-......|+..+.....|..+.+... .+.+.|+|.. .++...+|..
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35778888766566778888888777777766533 4556777753 3555566654
No 253
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=38.90 E-value=19 Score=29.72 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=18.6
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ 60 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~ 60 (209)
.++|+|||++++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999998888887763
No 254
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=38.80 E-value=39 Score=24.32 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=32.1
Q ss_pred EEEeCCCCCCCHHHHHHhhcc-CC-ceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 40 LLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 40 i~V~nL~~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
.||..+...++..+|++.++. |+ .|..|..+.-+ ...--|||.+..-.+|.+....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~---~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP---DGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT---TSSEEEEEEECTTSCHHHHHGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC---CCceEEEEEcCCCCcHHHHHHh
Confidence 444556667777777766654 33 45555443322 1234588988876666655433
No 255
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=38.09 E-value=80 Score=20.97 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=27.0
Q ss_pred CCCCHHHHHHhhcc-CC---ceEEE-EeecCCCCCCcceEEEEEecCHHHHHHH
Q 028447 47 HDCRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADA 95 (209)
Q Consensus 47 ~~~t~~~L~~~f~~-~G---~i~~~-~i~~~~~~g~~~g~afV~f~~~~~a~~A 95 (209)
..++..+|++.+.+ |+ .+..| .|....-.|.+.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 34566777665543 33 33333 34444445667777765 6677776554
No 256
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=37.68 E-value=67 Score=19.34 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=39.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 99 (209)
..+|.|.++.-......|+..+.....|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346778888776667778888888877877766433 456778885 345556666554
No 257
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=37.25 E-value=37 Score=22.13 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHhh-ccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 44 NLRHDCRPEDLRGPF-GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 44 nL~~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
.++.-+.-++|+.-. ..||...++.++.+ .-.|-..+.+|..+||+.|+-.. .-+.|+|-+..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCc-cccceEEEEEc
Confidence 456667777776555 46898888887733 25688889999999998775422 22334444443
No 258
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=37.17 E-value=53 Score=21.87 Aligned_cols=62 Identities=15% Similarity=0.020 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEEec
Q 028447 46 RHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (209)
Q Consensus 46 ~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 115 (209)
+..+++++|+.++...-.+..+.|..-...+. -|...+..+.+.|++.. .-.|..|.+...+
T Consensus 33 ~~~~tweel~~mvk~~f~L~~~~IkY~DEenD-----~V~i~Sq~E~eEAlkva---~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 33 PENTTWADIEAMVKVSFDLNTIQIKYLDEENE-----EVSINSQGEYEEALKMA---VKQGNQLQMQVHE 94 (101)
T ss_dssp TTTSCHHHHHHHHHHHHCCSSBCCEEECTTSC-----EECCCSHHHHHHHHHHH---HHHTSEEEEECCB
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEEecCCCC-----EEEEecHHHHHHHHHHh---ccCCCEEEEEEee
Confidence 44899999999886432233332222111221 24555677777777531 1235567776654
No 259
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=37.08 E-value=55 Score=18.23 Aligned_cols=54 Identities=9% Similarity=0.211 Sum_probs=36.5
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHHHHHHHHh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 98 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~ 98 (209)
++.|.|+.-......|+..+.....|..+.+... .+.+.|+|.. .++...++..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888776667778888888777777666533 4567788853 3455555644
No 260
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=36.95 E-value=58 Score=18.43 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=35.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 99 (209)
+|.|.++.-......|+..+...-.|..+.+-.. .+.+.|+|.. .++...+|..+
T Consensus 8 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 8 TLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5777777655455678888887766776666533 4567777753 45555666543
No 261
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.46 E-value=16 Score=22.44 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=8.2
Q ss_pred ceEEEEEecC
Q 028447 79 RGFGFVQYID 88 (209)
Q Consensus 79 ~g~afV~f~~ 88 (209)
...|||.|++
T Consensus 37 ~~~ClV~FeD 46 (68)
T 2e5p_A 37 REVCLVQFED 46 (68)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5689999975
No 262
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=36.01 E-value=92 Score=20.93 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=26.0
Q ss_pred CCCHHHHHHhhcc-CC---ceEEE-EeecCCCCCCcceEEEEEecCHHHHHH
Q 028447 48 DCRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 94 (209)
Q Consensus 48 ~~t~~~L~~~f~~-~G---~i~~~-~i~~~~~~g~~~g~afV~f~~~~~a~~ 94 (209)
.++..+|.+.+.+ |+ .++.| .|....-.|.+.|||.| |.+.+.|..
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566676655543 33 23333 44444445667788865 667777654
No 263
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=35.91 E-value=19 Score=27.84 Aligned_cols=28 Identities=11% Similarity=-0.041 Sum_probs=21.8
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceE
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLK 65 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~ 65 (209)
..+.|+|||+.++...|..++.....+.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~ 123 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVP 123 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCS
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCc
Confidence 3578999999999998988887543333
No 264
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=35.89 E-value=1e+02 Score=20.83 Aligned_cols=27 Identities=0% Similarity=0.126 Sum_probs=11.6
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEE
Q 028447 40 LLVRNLRHDCRPEDLRGPFGQFGRLKD 66 (209)
Q Consensus 40 i~V~nL~~~~t~~~L~~~f~~~G~i~~ 66 (209)
|.|.++.-......|+..+.....|..
T Consensus 78 ~~v~gm~C~~C~~~ie~~l~~~~gv~~ 104 (151)
T 1p6t_A 78 FDIEGMTCAACANRIEKRLNKIEGVAN 104 (151)
T ss_dssp EEESSCCSSSHHHHHHHHHTTSSSEEE
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCceE
Confidence 334444443334444444444444433
No 265
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=35.54 E-value=54 Score=18.58 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=33.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 99 (209)
++.|.++.-......|+..+.....|..+.+-.. .+.+.|+|.. .++...+|..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 5667777554445667788877766665555432 4567788853 45556666554
No 266
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=35.14 E-value=10 Score=29.65 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=24.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEee
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLP 70 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~ 70 (209)
-..|+|||+.++...|..+++....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34899999999999999999865555544443
No 267
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=34.60 E-value=64 Score=18.81 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=35.4
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 99 (209)
+|.|.++.-......|+..+.....|..+.+-.. .+.+.|+|. +.++...+|..+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5677777666667778888888776766554322 345777875 344556666554
No 268
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=34.32 E-value=1.2e+02 Score=21.81 Aligned_cols=51 Identities=6% Similarity=0.159 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
.++. ...+++.+.+..+-+|..|..+ +|...-++.|.+.+.++.+..++.|
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHH
Confidence 4443 3457788888899999999886 5555677889999999888777544
No 269
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=34.19 E-value=1e+02 Score=20.45 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=40.1
Q ss_pred CeEEEeCCCCCCCHHH--HHHhh----cc-C---C-----ceEEEEeecCCCCC--CcceEEEEEecCHHH---HHHHHH
Q 028447 38 TSLLVRNLRHDCRPED--LRGPF----GQ-F---G-----RLKDIYLPRDYYTG--EPRGFGFVQYIDPAD---AADAKY 97 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~--L~~~f----~~-~---G-----~i~~~~i~~~~~~g--~~~g~afV~f~~~~~---a~~Ai~ 97 (209)
++|.|-|||....+.. ++.+| .. | + .|..+.-..++.+. ...-...|.|....+ ...|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 5788999998632211 22222 21 2 2 34444433222211 123456777776654 444444
Q ss_pred hhCCceecCeEEEEE
Q 028447 98 HMDGYLLLGRELTVV 112 (209)
Q Consensus 98 ~l~g~~i~g~~i~V~ 112 (209)
......+.|.+|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 555678899998874
No 270
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=34.17 E-value=8.5 Score=26.77 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=0.0
Q ss_pred eEEEEEecCHHHHHHHHHhhCCceecC
Q 028447 80 GFGFVQYIDPADAADAKYHMDGYLLLG 106 (209)
Q Consensus 80 g~afV~f~~~~~a~~Ai~~l~g~~i~g 106 (209)
-++|++|++...+..|+..|+|....|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp ---------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCC
Confidence 467888888888899998888866554
No 271
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=34.00 E-value=52 Score=23.27 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=26.4
Q ss_pred eEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc
Q 028447 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (209)
Q Consensus 64 i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 102 (209)
|..+.++.. ..||.||++...++...+|..+.|.
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 556666532 4899999999988888898888875
No 272
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=33.79 E-value=37 Score=22.74 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=36.3
Q ss_pred CCCCCCCHHHHHHhh-ccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028447 44 NLRHDCRPEDLRGPF-GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 44 nL~~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
.++.-+.-++|+.-. ..||...++.++.+ .-.|-..+.+|..+||+.|+-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhcc
Confidence 456667777776555 36888888877733 246778899999999988754
No 273
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=33.12 E-value=72 Score=18.35 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=35.4
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 99 (209)
++.|.++.-......|+..+...-.|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4667777655455678888887777777766533 4567788853 45556666554
No 274
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=33.07 E-value=92 Score=20.74 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCCCHHHHHHhhcc-CC---ceEEE-EeecCCCCCCcceEEEEEecCHHHHHH
Q 028447 47 HDCRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 94 (209)
Q Consensus 47 ~~~t~~~L~~~f~~-~G---~i~~~-~i~~~~~~g~~~g~afV~f~~~~~a~~ 94 (209)
..++..+|++.+.+ |+ .+..| .|....-.|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 44566777665543 33 33333 44444445667788865 667776653
No 275
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=33.04 E-value=97 Score=21.34 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=18.7
Q ss_pred CCceEEEEeecCCCCCCcceEEEEE-ecCHHHHHHHHHhh
Q 028447 61 FGRLKDIYLPRDYYTGEPRGFGFVQ-YIDPADAADAKYHM 99 (209)
Q Consensus 61 ~G~i~~~~i~~~~~~g~~~g~afV~-f~~~~~a~~Ai~~l 99 (209)
+-.|..|.+-.|. ....+||. |-+.++.+.+++.|
T Consensus 43 ~vtVt~V~vS~Dl----~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDF----SACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTS----CCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC----cEEEEEEEecCChhhHHHHHHHH
Confidence 4578888887663 23445555 44444433343333
No 276
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=32.96 E-value=69 Score=18.10 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=36.4
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 99 (209)
++.|.++.-......|+..+.....|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 5667777666667778888888777777766533 4567788753 45556666543
No 277
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=32.87 E-value=1e+02 Score=20.01 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=38.9
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 99 (209)
.+|.|.++.-......|+..+...-.|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35677888776677889999988877777766533 4567888863 35556666554
No 278
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.59 E-value=20 Score=23.70 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=14.9
Q ss_pred EeCCCCCCCHHHHHHhh-ccCCc
Q 028447 42 VRNLRHDCRPEDLRGPF-GQFGR 63 (209)
Q Consensus 42 V~nL~~~~t~~~L~~~f-~~~G~ 63 (209)
|.+|...||-+||...| +..|+
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 34688899988887754 44454
No 279
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=31.58 E-value=1e+02 Score=20.83 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=36.2
Q ss_pred CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH-HhhCC
Q 028447 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK-YHMDG 101 (209)
Q Consensus 50 t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai-~~l~g 101 (209)
..+++.+.+..+.+|..|..+ +|...-++.|.+.+.++.+..+ +.|..
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~~ 124 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIGK 124 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhhc
Confidence 446677778889999888765 5555667789999999998888 55543
No 280
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=37.78 E-value=10 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=19.3
Q ss_pred cceEEEEEecCHHHHHHHHHhhCC
Q 028447 78 PRGFGFVQYIDPADAADAKYHMDG 101 (209)
Q Consensus 78 ~~g~afV~f~~~~~a~~Ai~~l~g 101 (209)
..|-|+|.|.+.++...|++.|-+
T Consensus 76 kegqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 76 KEGQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 357899999999988888877644
No 281
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=31.54 E-value=1.1e+02 Score=20.10 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=41.7
Q ss_pred eCCCCCCCHHHHHHh----------hccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCce
Q 028447 43 RNLRHDCRPEDLRGP----------FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (209)
Q Consensus 43 ~nL~~~~t~~~L~~~----------f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 103 (209)
-+||..++.+++.++ +..-|.+..+.-+ .|.-..++.+.-.+.++..+.|..|.-+.
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv----~G~y~nisIfdv~s~~eLh~iL~~LPLfp 75 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRI----AGHYANYSVFDVPSVEALHDTLMQLPLFP 75 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEe----cCCccEEEEEEcCCHHHHHHHHHhCCCCc
Confidence 378888887665443 4456888888665 46667888999999999988777666554
No 282
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=31.48 E-value=75 Score=18.10 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=33.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 88 (209)
..++.|.++.-......|+..+.....|..+.+-.. .+.+.|+|..
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~ 50 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDP 50 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECC
Confidence 346788888877777888898988877777766533 4567788863
No 283
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=31.09 E-value=1.3e+02 Score=20.72 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH-HhhC
Q 028447 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK-YHMD 100 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai-~~l~ 100 (209)
.++.....+++.+.+..+-+|..|..+ +|...-++.|.+.+.++.+..+ +.+.
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 344333457788888999999999887 5666667889999999998887 3444
No 284
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=30.68 E-value=59 Score=24.42 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=38.2
Q ss_pred CCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCc------eecCe-EEEEE
Q 028447 49 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY------LLLGR-ELTVV 112 (209)
Q Consensus 49 ~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~------~i~g~-~i~V~ 112 (209)
+.+++|.+.+..|..+. + ..+.-+---||+|.+.++....+..|.|. .++|. .|...
T Consensus 65 ~~~~~I~~Ei~aYnpLi----P---~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~ai 128 (194)
T 3fjv_A 65 FDEDGIQAELDAYLPLV----P---DGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAI 128 (194)
T ss_dssp CSHHHHHHHHHHHGGGC----C---CSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEECE
T ss_pred CCHHHHHHHHHHhcccC----C---CCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeeee
Confidence 45667777777776542 1 12333455799999999999999999984 35665 45533
No 285
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=30.63 E-value=83 Score=18.32 Aligned_cols=56 Identities=13% Similarity=0.177 Sum_probs=37.6
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~l 99 (209)
.++.|.++.-......|+..+.....|..+.+-.. .+.+.|+|.. .++...+|..+
T Consensus 10 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 10 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 45778888877777888888887766665555432 4567788853 35556666554
No 286
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=30.41 E-value=23 Score=22.40 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=12.7
Q ss_pred CceEEEEeecCCCCCCcceEEEEEecC
Q 028447 62 GRLKDIYLPRDYYTGEPRGFGFVQYID 88 (209)
Q Consensus 62 G~i~~~~i~~~~~~g~~~g~afV~f~~ 88 (209)
|.|..|... ...|||.|++
T Consensus 45 GTI~kV~~~--------~e~ClV~F~D 63 (79)
T 2m0o_A 45 GTIKKVDSA--------REVCLVQFED 63 (79)
T ss_dssp EEEEEEETT--------TTEEEEEETT
T ss_pred EEEEEeccC--------CCEEEEEEcC
Confidence 566555433 5679999976
No 287
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=30.09 E-value=1.6e+02 Score=22.73 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=40.8
Q ss_pred CCeEEEeCCCCCCC--HHHHHHh--------hccCC-----ceEEEEeecCCCC--CCcceEEEEEecCHHHHH---HHH
Q 028447 37 PTSLLVRNLRHDCR--PEDLRGP--------FGQFG-----RLKDIYLPRDYYT--GEPRGFGFVQYIDPADAA---DAK 96 (209)
Q Consensus 37 ~~~i~V~nL~~~~t--~~~L~~~--------f~~~G-----~i~~~~i~~~~~~--g~~~g~afV~f~~~~~a~---~Ai 96 (209)
-++|.|-|||.... +..++.+ |-..+ .|..+.=..++.+ ....-.-.|.|....+-+ .|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36899999998765 3333333 32222 1233322111111 111334667776665544 444
Q ss_pred HhhCCceecCeEEEEEEe
Q 028447 97 YHMDGYLLLGRELTVVFA 114 (209)
Q Consensus 97 ~~l~g~~i~g~~i~V~~a 114 (209)
.......+.|.+|.+.-.
T Consensus 132 R~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HTTSCEEETTEEEEEEEC
T ss_pred HHhcccccCCCceEEeCC
Confidence 444567889999887643
No 288
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=29.88 E-value=35 Score=28.26 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=34.6
Q ss_pred EEeCCCCC---CCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 41 LVRNLRHD---CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 41 ~V~nL~~~---~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
+||||... -....+.++.++||.|..+.+. +.-+|.+.+.+.++.++..
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHHT
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHhc
Confidence 46776543 2245678888999999777653 3456778899999888743
No 289
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=29.59 E-value=62 Score=21.07 Aligned_cols=54 Identities=7% Similarity=-0.056 Sum_probs=31.7
Q ss_pred CCCHHHHHHhhccCCceEEEEee-cCCCCCCcceEEEEEecC--HHHHHHHHHhhCC
Q 028447 48 DCRPEDLRGPFGQFGRLKDIYLP-RDYYTGEPRGFGFVQYID--PADAADAKYHMDG 101 (209)
Q Consensus 48 ~~t~~~L~~~f~~~G~i~~~~i~-~~~~~g~~~g~afV~f~~--~~~a~~Ai~~l~g 101 (209)
.+.+-.|-++...||.-..|..- .+...+...|.-+|++.- .+++++|+..|..
T Consensus 31 ~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 31 TTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp SCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 44566667777777743332111 112234556888888874 6677788877743
No 290
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=28.90 E-value=91 Score=20.89 Aligned_cols=54 Identities=7% Similarity=0.105 Sum_probs=25.6
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec----CHHHHHHHHHh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYH 98 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~ 98 (209)
+|.|.|+.-......|+..+.....|..+.+... .+.+.|+|. +.++...+|+.
T Consensus 83 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 140 (149)
T 2ew9_A 83 ELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEE 140 (149)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHH
T ss_pred EEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHh
Confidence 4555555444344555555555544544444322 234555554 23444444544
No 291
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.81 E-value=55 Score=22.40 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=22.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCce
Q 028447 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64 (209)
Q Consensus 36 ~~~~i~V~nL~~~~t~~~L~~~f~~~G~i 64 (209)
.+.+|+|.++. ..+.++|+.++..+|..
T Consensus 24 ~g~~i~itG~~-~~~r~~l~~~i~~~Gg~ 51 (129)
T 2d8m_A 24 QGVVVVLSGFQ-NPFRSELRDKALELGAK 51 (129)
T ss_dssp TTEEEEEESCC-TTHHHHHHHHHHHTTEE
T ss_pred CCeEEEEeCCC-cHHHHHHHHHHHHcCCE
Confidence 45688888886 55778899999999865
No 292
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=28.80 E-value=83 Score=17.71 Aligned_cols=55 Identities=7% Similarity=0.006 Sum_probs=33.6
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec---CHHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~---~~~~a~~Ai~~l 99 (209)
++.|.++.-......|+..+.....|..+.+... .+.+.|+|. +.++...++..+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 4667776654455667888877766766655422 455677775 345555666554
No 293
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=28.66 E-value=41 Score=29.02 Aligned_cols=42 Identities=19% Similarity=0.028 Sum_probs=26.6
Q ss_pred HHHhh--ccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH
Q 028447 54 LRGPF--GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 54 L~~~f--~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 96 (209)
|..+| ..+|-|..+.|...+. ......+++.|.+.++|..|+
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 34445 3688898887766542 222345788898877765533
No 294
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.53 E-value=1.2e+02 Score=19.32 Aligned_cols=54 Identities=7% Similarity=0.104 Sum_probs=33.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec-CHHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~-~~~~a~~Ai~~l 99 (209)
+|.|. +.-..-...|+..+.....|..+.+-.. .+.+.|+|. +.++...+|+.+
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHHh
Confidence 34444 4333335778888888877777766543 345667764 456666676553
No 295
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=28.23 E-value=1.3e+02 Score=19.78 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=32.4
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-------CCceEEEEeecCCCC-CC--cceEE-EEEecCHHHHHH
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQ-------FGRLKDIYLPRDYYT-GE--PRGFG-FVQYIDPADAAD 94 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~-------~G~i~~~~i~~~~~~-g~--~~g~a-fV~f~~~~~a~~ 94 (209)
.|.+..|...++++++.++.+. .-.|..+.+-.+... +. .-.++ +++|++.++.+.
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAE 79 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHH
Confidence 4556688888888776655433 334556655544322 21 22334 568988877643
No 296
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.16 E-value=1.6e+02 Score=20.71 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=39.9
Q ss_pred eEEEe-CCCCCC--CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 39 SLLVR-NLRHDC--RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~-nL~~~~--t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
+.||. .++... ..+++.+.+..+-+|..|..+ +|...-.++|.+.+.++....+..+
T Consensus 64 ~a~v~v~v~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~D~~l~v~~~d~~~l~~~l~~~ 123 (162)
T 3i4p_A 64 TVFVSIRTASHSIEWLKRFSEVVSEFPEVVEFYRM----SGDVDYLLRVVVPDIAAYDAFYKRM 123 (162)
T ss_dssp EEEEEEECCSCCHHHHHHHHHHHHHCTTEEEEEEC----CSSCSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEEEEcCCChHHHHHHHHHHhcCCCEEEeeec----CCCCCEEEEEEECCHHHHHHHHHHH
Confidence 34443 454432 245677778888899999886 5666667889999999988877543
No 297
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=28.03 E-value=89 Score=17.86 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=36.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC--HHHHHHHHHhh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID--PADAADAKYHM 99 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~--~~~a~~Ai~~l 99 (209)
++.|.|+.-......|+..+.....|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHHc
Confidence 5778888776667778888888777777766533 3567778764 34445555543
No 298
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=27.85 E-value=41 Score=29.67 Aligned_cols=48 Identities=8% Similarity=0.018 Sum_probs=31.7
Q ss_pred HHHHHhhc----cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 52 EDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 52 ~~L~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
-+|..+|. .+|-|..+.|...+.. .....+++.|.+.++|.+|+..+.
T Consensus 288 ~dl~~~~~GseGtlGIIT~~tlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 288 INYKHIILGSEGTLGIITEAVMKVHAVP-QAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp CCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cchhhhhccCCCCcEEEEEEEEEEEecc-cceEEEEEEcCCHHHHHHHHHHHH
Confidence 34555542 5678888877655422 234567889999999988876553
No 299
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=27.30 E-value=60 Score=19.82 Aligned_cols=63 Identities=5% Similarity=-0.067 Sum_probs=37.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCcee
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i 104 (209)
...|.||-+....+.+.|...+...|.-..| ... +..--.-+--|.+.++|+.++..|...-+
T Consensus 9 ~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~---~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 9 LYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLK---DGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEE---TTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecC---CcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 4577788777666666666666555533333 211 11122334478899999999988865434
No 300
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=26.72 E-value=1.6e+02 Score=20.28 Aligned_cols=52 Identities=6% Similarity=0.156 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028447 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (209)
Q Consensus 44 nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 100 (209)
.++. ...+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....++.|.
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~ 125 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIG 125 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 4443 3457788888999999999886 55556678899999999888775554
No 301
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.58 E-value=1.4e+02 Score=21.37 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=26.1
Q ss_pred CCCHHHHHHhhcc-CC---ceEEE-EeecCCCCCCcceEEEEEecCHHHHHH
Q 028447 48 DCRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 94 (209)
Q Consensus 48 ~~t~~~L~~~f~~-~G---~i~~~-~i~~~~~~g~~~g~afV~f~~~~~a~~ 94 (209)
.++..+|.+.+.. |+ .++.| .|....-.|...|||.| |.+.+.|..
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 4567777766654 44 22223 33434344566777766 667776654
No 302
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=26.57 E-value=47 Score=22.01 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCHHHHHHhhccCCceEEEEe-ecCCCCCCcceEEEEEec-CHHHHHHHHHhhCC
Q 028447 48 DCRPEDLRGPFGQFGRLKDIYL-PRDYYTGEPRGFGFVQYI-DPADAADAKYHMDG 101 (209)
Q Consensus 48 ~~t~~~L~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~-~~~~a~~Ai~~l~g 101 (209)
.+.+-.|-++...||.-..|.. ..+...+...|.-+|++. +.++.++|+..|..
T Consensus 32 ~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 32 SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp CTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3445567777778874433321 111224456788888887 45566777776654
No 303
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=26.02 E-value=1.4e+02 Score=21.11 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=28.6
Q ss_pred HHHhhccCCceEEEEeec-----CCC----------CCCcceEEEEEecCHHHHHHHHH
Q 028447 54 LRGPFGQFGRLKDIYLPR-----DYY----------TGEPRGFGFVQYIDPADAADAKY 97 (209)
Q Consensus 54 L~~~f~~~G~i~~~~i~~-----~~~----------~g~~~g~afV~f~~~~~a~~Ai~ 97 (209)
..++|..||.+..+...- .+. .+..--|.+|+|.+.+...++..
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 457889999776553222 111 23345689999999888777663
No 304
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=25.88 E-value=31 Score=28.59 Aligned_cols=47 Identities=21% Similarity=0.077 Sum_probs=30.9
Q ss_pred EEeCCCCCC---CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH
Q 028447 41 LVRNLRHDC---RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 41 ~V~nL~~~~---t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 96 (209)
+||||..-. ....+.++.++||.|..+.+. +.-+|...+.+.++.++
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~i~~vl 69 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA---------WTPVVVLNGLAAVREAL 69 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET---------TEEEEEEEHHHHHHHHH
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC---------CeeEEEECCHHHHHHHH
Confidence 578765432 245577888999999877764 12345566777777776
No 305
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=25.58 E-value=31 Score=21.12 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=8.3
Q ss_pred ceEEEEEecC
Q 028447 79 RGFGFVQYID 88 (209)
Q Consensus 79 ~g~afV~f~~ 88 (209)
.+.|+|.|.+
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 6789999975
No 306
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=24.98 E-value=1.7e+02 Score=21.59 Aligned_cols=49 Identities=4% Similarity=-0.151 Sum_probs=32.8
Q ss_pred CeEEEeCCCCCCCHHH--------HHHhhccCCceEEEEeecCCCCCCcceEEEEEecCH
Q 028447 38 TSLLVRNLRHDCRPED--------LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~--------L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 89 (209)
..=|+-.||.+++.++ ++++|..+|-|..+.|..+. ...-.|-|.|.+.
T Consensus 71 are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~---~~NpHaHim~t~R 127 (185)
T 2ns6_A 71 FKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGG---GENPHCHLMISER 127 (185)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET---TTEEEEEEEECCB
T ss_pred EEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC---CCCceEEEEEeec
Confidence 3445668999988654 45566778888888777532 2356788877653
No 307
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=24.60 E-value=53 Score=18.64 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=30.2
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 98 (209)
++.|.|+.-..-...|+..+... .|..+.+-.. .+.+.|+|...++...++..
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 35555555444456677777766 6666655432 45677888754344455543
No 308
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=24.60 E-value=70 Score=27.36 Aligned_cols=52 Identities=23% Similarity=0.118 Sum_probs=32.9
Q ss_pred CCCCHHHHHHhhc----cCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028447 47 HDCRPEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (209)
Q Consensus 47 ~~~t~~~L~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 99 (209)
.+.+.-+|..+|. .+|-|..+.|...+.. .....+++.|.+.++|.+++..+
T Consensus 196 k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 196 KDNTGYDLRDLFIGAEGTLGIITAATLKLFPKP-RAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CCCSSCCCHHHHTTSTTSSCEEEEEEEECEECC-SEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHhccCCCCcEEEEEEEEEEeecC-ceeEEEEEEcCCHHHHHHHHHHH
Confidence 3333334555543 4677888877655422 23456788999999988877655
No 309
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=24.24 E-value=1e+02 Score=17.36 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=36.7
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~----~~~~a~~Ai~~l 99 (209)
.++.|.++.-......|+..+...-.|..+.+... .+.+.|+|. +.++...++..+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 35778888776667778888887766766665432 456777875 345555566543
No 310
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=24.22 E-value=88 Score=25.98 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=28.2
Q ss_pred EEEeCCCCCC--CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHH
Q 028447 40 LLVRNLRHDC--RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97 (209)
Q Consensus 40 i~V~nL~~~~--t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 97 (209)
-+||||.... ....+.++.++||.|..+.+. +.-+|...+.+.++.++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 3567764332 245677888899998877653 235677778888887773
No 311
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=23.60 E-value=98 Score=16.84 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=33.3
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecC----HHHHHHHHHh
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 98 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~----~~~a~~Ai~~ 98 (209)
++.|.++.-......|+..+...-.|..+.+... .+.+.|+|.. .++...+|..
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777654445667788877766766665432 4567778753 3445555654
No 312
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.01 E-value=15 Score=22.26 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=8.1
Q ss_pred ceEEEEEecC
Q 028447 79 RGFGFVQYID 88 (209)
Q Consensus 79 ~g~afV~f~~ 88 (209)
...|||.|++
T Consensus 35 ~~~ClV~FeD 44 (63)
T 2e5q_A 35 KQSCLVTFED 44 (63)
T ss_dssp TSEEEEEETT
T ss_pred CCEEEEEEcc
Confidence 6789999975
No 313
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=22.82 E-value=42 Score=21.66 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=24.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccC
Q 028447 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQF 61 (209)
Q Consensus 34 ~~~~~~i~V~nL~~~~t~~~L~~~f~~~ 61 (209)
-+.+..|.|.+.+..++.++.++|+..|
T Consensus 16 lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 16 LNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 4678899999999999999998888877
No 314
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=22.76 E-value=2e+02 Score=20.13 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=27.0
Q ss_pred CCCHHHHHHhhc-cCCc---eEEE-EeecCCCCCCcceEEEEEecCHHHHHH
Q 028447 48 DCRPEDLRGPFG-QFGR---LKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 94 (209)
Q Consensus 48 ~~t~~~L~~~f~-~~G~---i~~~-~i~~~~~~g~~~g~afV~f~~~~~a~~ 94 (209)
.++..+|.+.+. .|+. ++.| .|....-.|...|||.| |.+.+.|..
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 466788887775 4552 2222 34444445666777766 667776654
No 315
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=22.74 E-value=1.5e+02 Score=18.50 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=34.8
Q ss_pred HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 96 (209)
.+++.+.+..+-+|..|..+ +|...-.+.|.+.+.++.+..+
T Consensus 15 ~~~~~~~l~~~peV~~~~~v----tG~~D~ll~v~~~d~~~l~~~l 56 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSV----TGPYDLVALVRLKDVEELDDVV 56 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEE----SSSSSEEEEEEESSGGGHHHHC
T ss_pred HHHHHHHHhcCCCeEEEEEe----ecCCCEEEEEEECCHHHHHHHH
Confidence 57788888899999999888 6666677889999999888776
No 316
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=22.65 E-value=46 Score=20.68 Aligned_cols=56 Identities=13% Similarity=0.018 Sum_probs=31.6
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEec-CHHHHHHHHHhh
Q 028447 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYHM 99 (209)
Q Consensus 38 ~~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~-~~~~a~~Ai~~l 99 (209)
.+|.|.++.-......|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 24 ~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~------~~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 24 LSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPA------SRTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETT------TTEEEEESCCCHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECC------CCEEEEEecCCHHHHHHHHHHc
Confidence 34556565544445667777776656666655433 345666664 345556666543
No 317
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=22.48 E-value=1.2e+02 Score=19.52 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHHhhCCceecCeEEEEEE
Q 028447 46 RHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (209)
Q Consensus 46 ~~~~t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 113 (209)
+..+++++|..++...-.+..+.|..-...+. -|...+..+.+.|++.. .-.|..|.+..
T Consensus 25 ~~~~tweel~~mvk~~f~L~~~~ikY~DEenD-----~v~i~Sq~E~eEAlkva---~k~~n~L~m~v 84 (87)
T 2bkf_A 25 PENTTWADIEAMVKVSFDLNTIQIKYLDEENE-----EVSINSQGEYEEALKMA---VKQGNQLQMQV 84 (87)
T ss_dssp GGGCCHHHHHHHHHHHHTCSSEEEEEECTTSC-----EEEECSHHHHHHHHHHH---HHTTTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEEEcCCCC-----EEEEecHHHHHHHHHHh---ccCCCEEEEEE
Confidence 34789999999886432333333333222222 25556677777777531 11244565554
No 318
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=22.48 E-value=1e+02 Score=21.08 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=15.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC
Q 028447 37 PTSLLVRNLRHDCRPEDLRGPFGQFG 62 (209)
Q Consensus 37 ~~~i~V~nL~~~~t~~~L~~~f~~~G 62 (209)
...||||+++.... +.+++..+|
T Consensus 6 ~~~l~~g~~~~~~~---~~~ll~~~g 28 (157)
T 3rgo_A 6 DHTVLLGALPLKNM---TRRLVLDEN 28 (157)
T ss_dssp SSSEEEESCCCGGG---HHHHHHHSC
T ss_pred cCCeEEecCcCccc---hHHHHHHcC
Confidence 44799999887643 444455565
No 319
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=22.21 E-value=1.6e+02 Score=18.88 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=35.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceEEEEeec-CCCCCCcceEEEEEecC-HHHHHHHHHhhCC
Q 028447 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPR-DYYTGEPRGFGFVQYID-PADAADAKYHMDG 101 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~~f~~~G~i~~~~i~~-~~~~g~~~g~afV~f~~-~~~a~~Ai~~l~g 101 (209)
.|.|.-....+.+-.|-++...||--..|..-. +...+...|.-+|++.- .++.++|+..|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 89 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 344443444566667778888887543332111 12234556788888864 4556777766643
No 320
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=22.17 E-value=1.2e+02 Score=17.36 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=15.4
Q ss_pred ceEEEEEecCHHHHHHHHHh
Q 028447 79 RGFGFVQYIDPADAADAKYH 98 (209)
Q Consensus 79 ~g~afV~f~~~~~a~~Ai~~ 98 (209)
.+-.|-.|.+.++|+++|..
T Consensus 31 ~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 31 PAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp TTCEEEEESSHHHHHHHHHC
T ss_pred CCCccCCCCCHHHHHHHHHh
Confidence 34567789999999988853
No 321
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=21.80 E-value=2e+02 Score=19.63 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=37.0
Q ss_pred CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHH-HhhCC
Q 028447 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK-YHMDG 101 (209)
Q Consensus 50 t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai-~~l~g 101 (209)
..+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+ +.|..
T Consensus 77 ~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~l~~~l~~ 125 (150)
T 2pn6_A 77 YHVELGNKLAQIPGVWGVYFV----LGDNDFIVMARYKTREEFMEKFLERVMS 125 (150)
T ss_dssp HHHHHHHHHHTSTTEEEEEEC----SSSCSEEEEEEESSHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHhcCchhhhhhhh----cCcCCEEEEEEECCHHHHHHHHHHHhcc
Confidence 456778888889999998876 5565667889999999988877 55543
No 322
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=21.55 E-value=82 Score=20.80 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCCHHHHHHhhcc-CCceEEEEeecCC----CCCCcceEEEEEecCHHHHH
Q 028447 48 DCRPEDLRGPFGQ-FGRLKDIYLPRDY----YTGEPRGFGFVQYIDPADAA 93 (209)
Q Consensus 48 ~~t~~~L~~~f~~-~G~i~~~~i~~~~----~~g~~~g~afV~f~~~~~a~ 93 (209)
.++..+|.+.+.+ |+.-.++.++... -.|.+.|||.| |.+.+.|.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 4566776665543 3321222233222 23456677755 55555544
No 323
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=21.30 E-value=48 Score=15.65 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=9.5
Q ss_pred HHHHHHhhccCC
Q 028447 51 PEDLRGPFGQFG 62 (209)
Q Consensus 51 ~~~L~~~f~~~G 62 (209)
-.+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467888998886
No 324
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=21.07 E-value=1.5e+02 Score=20.33 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=39.2
Q ss_pred eEEEeCCCCCCCHHH---HHHhhccCCceEEEEeecCCCCCCcceEEEEEec--CHHHHHHHHHhh-------CCc---e
Q 028447 39 SLLVRNLRHDCRPED---LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI--DPADAADAKYHM-------DGY---L 103 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~---L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~--~~~~a~~Ai~~l-------~g~---~ 103 (209)
.|.|.++|..+..+- .+.+-..|.--....|+ |...|.--|.|. +.+..++|++.| .|. .
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtyt 118 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYT 118 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 456788887654321 11122233322233343 233566667775 677788887655 342 4
Q ss_pred ecCeEEEEEEe
Q 028447 104 LLGRELTVVFA 114 (209)
Q Consensus 104 i~g~~i~V~~a 114 (209)
++|..|.|.+.
T Consensus 119 l~gn~l~i~it 129 (170)
T 4hhu_A 119 LSGNRLVIVIT 129 (170)
T ss_dssp ECSSEEEEEEE
T ss_pred EeCCEEEEEEe
Confidence 67887777664
No 325
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=20.98 E-value=90 Score=21.99 Aligned_cols=18 Identities=0% Similarity=0.045 Sum_probs=13.7
Q ss_pred eEEEeCCCCCCCHHHHHH
Q 028447 39 SLLVRNLRHDCRPEDLRG 56 (209)
Q Consensus 39 ~i~V~nL~~~~t~~~L~~ 56 (209)
.||||+++...+.+.|++
T Consensus 16 ~LylG~~~~a~~~~~L~~ 33 (161)
T 3emu_A 16 YIHLGSFLNAHNVDYIHN 33 (161)
T ss_dssp TEEEEETTGGGCHHHHHH
T ss_pred CEEECChHHhhCHHHHHH
Confidence 499999988777666654
No 326
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.88 E-value=1.3e+02 Score=19.33 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=19.3
Q ss_pred ceEEEEeecCCCCCCcceEEEEEecC
Q 028447 63 RLKDIYLPRDYYTGEPRGFGFVQYID 88 (209)
Q Consensus 63 ~i~~~~i~~~~~~g~~~g~afV~f~~ 88 (209)
+|.+|.|..-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 56777665555567889999999964
No 327
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=20.86 E-value=1.5e+02 Score=17.83 Aligned_cols=44 Identities=7% Similarity=-0.052 Sum_probs=35.8
Q ss_pred CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHH
Q 028447 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97 (209)
Q Consensus 50 t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 97 (209)
..+++.+.+..+-+|..|..+ +|...-.+.|.+.+.++.+..+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVV----YGVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEEC----SSSCSEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEEE----eccCCEEEEEEECCHHHHHHHHH
Confidence 357788888999999999887 56666678889999999888774
No 328
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=20.65 E-value=1.4e+02 Score=21.52 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=28.2
Q ss_pred CCHHHHHHhhccCCceE---EEEeecCCCCCCcceEEEEE
Q 028447 49 CRPEDLRGPFGQFGRLK---DIYLPRDYYTGEPRGFGFVQ 85 (209)
Q Consensus 49 ~t~~~L~~~f~~~G~i~---~~~i~~~~~~g~~~g~afV~ 85 (209)
.++++|.++-.+.|.+. .+.|..+..+|....+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58899999999999763 56666664478888888754
No 329
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=20.47 E-value=1.6e+02 Score=17.96 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=36.1
Q ss_pred CHHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEecCHHHHHHHHH
Q 028447 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97 (209)
Q Consensus 50 t~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 97 (209)
..+++.+.+..+-+|..|..+ +|...=.+.|.+.+.++.+..+.
T Consensus 14 ~~~~~~~~l~~~peV~e~~~v----tG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVV----YGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEEC----BSSCSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeeEEEEE----cccCCEEEEEEECCHHHHHHHHH
Confidence 357788888899999999887 56666678899999999988875
No 330
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.24 E-value=2.1e+02 Score=19.47 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=34.5
Q ss_pred HHHHHHhhccCCceEEEEeecCCCCCCcceEEEEEe-cCHHHHHHHH-HhhC
Q 028447 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-IDPADAADAK-YHMD 100 (209)
Q Consensus 51 ~~~L~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f-~~~~~a~~Ai-~~l~ 100 (209)
.+++.+.+..+-+|..|..+ +|...-++.|.+ .+.++.+..+ +.|.
T Consensus 82 ~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~~d~~~l~~~~~~~l~ 129 (151)
T 2dbb_A 82 ADKVISEISDIEYVKSVEKG----VGRYNIIVRLLLPKDIKDAENLISEFLQ 129 (151)
T ss_dssp HHHHHHHHTTCTTEEEEEEE----ESSCSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeEe----cCCCCEEEEEEEcCCHHHHHHHHHHHhh
Confidence 35677778888899999887 555566788889 8998888777 4443
No 331
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=20.01 E-value=1.5e+02 Score=19.31 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHhhccC--------CceEEEEe------ecCCCCCCc-ceEEEEEecCHHHHHHHH
Q 028447 45 LRHDCRPEDLRGPFGQF--------GRLKDIYL------PRDYYTGEP-RGFGFVQYIDPADAADAK 96 (209)
Q Consensus 45 L~~~~t~~~L~~~f~~~--------G~i~~~~i------~~~~~~g~~-~g~afV~f~~~~~a~~Ai 96 (209)
|.+.++++++.++.+.| |.|..+.. ...- .... ..|.++.|....++.+.+
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I-~k~~~G~Y~l~~f~a~~~~i~el 75 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPI-AKDPQGYFLWYQVEMPEDRVNDL 75 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCc-CCCCEEEEEEEEEEeChHHHHHH
Confidence 35666777666555444 45554421 1110 1122 346678887655554444
Done!