BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028451
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/192 (48%), Positives = 129/192 (67%), Gaps = 7/192 (3%)
Query: 16 FLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVS-KYRGLMGTVVTIAREEGLW 74
FL + AAC A+L T PLDTAKVRLQ+Q ++ + S +YRG++GT++T+ R EG
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 75 ALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLV-GSDFVGDIPLYQKIFAALLTGAIAIVV 133
+L+NG++AGL RQ + +RIGLYD VK F GS+ G + ++ A TGA+A+ V
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG---IGSRLLAGSTTGALAVAV 121
Query: 134 ANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNA 193
A PTD+VKVR QA+ + G RRY ++AY TI R+EG+ LW G PN+ARNAIVN
Sbjct: 122 AQPTDVVKVRFQAQARAGGG--RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179
Query: 194 AELASYDQVKEV 205
AEL +YD +K+
Sbjct: 180 AELVTYDLIKDT 191
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 32 PLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQCIYG 91
P D KVR Q Q + G +Y+ + TIAREEG+ LW G + R I
Sbjct: 124 PTDVVKVRFQAQARAGGG-----RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 92 GLRIGLYDPVK-TFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKL 150
+ YD +K T L + D+P + +A G V+A+P D+VK R
Sbjct: 179 CAELVTYDLIKDTLLKANLMTDDLPCH--FTSAFGAGFCTTVIASPVDVVKTRYM----- 231
Query: 151 PSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNAAELASYDQVKE 204
+ +Y+ A T++R+EG A + G P+ R N +Y+Q+K
Sbjct: 232 -NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 119 KIFAALLTGAIAIVVANPTDLVKVRLQAEGK----LPSGVPRRYYGALDAYCTIVRQEGL 174
K A IA ++ P D KVRLQ +G+ + + +Y G L T+VR EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 175 GALWTGLGPNIARNAIVNAAELASYDQVKE 204
+L+ GL + R + + YD VK+
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQ 93
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 12/200 (6%)
Query: 10 ISFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAR 69
+SF + FL AA ++ P++ K+ LQ+Q AS + +Y+G++ VV I +
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQH--ASKQISAEKQYKGIIDCVVRIPK 62
Query: 70 EEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALL---- 125
E+G + W G +A + R L D K +G V + + FA L
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG--VDRHKQFWRYFAGNLASGG 120
Query: 126 -TGAIAIVVANPTDLVKVRLQAE-GKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGP 183
GA ++ P D + RL A+ GK R + G + I + +GL L+ G
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 178
Query: 184 NIARNAIVNAAELASYDQVK 203
++ I AA YD K
Sbjct: 179 SVQGIIIYRAAYFGVYDTAK 198
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 10/189 (5%)
Query: 17 LCSAFAACFAELCTI-PLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWA 75
L S AA LC + PLD A+ RL G G + ++ GL + I + +GL
Sbjct: 116 LASGGAAGATSLCFVYPLDFARTRLAAD----VGKGAAQREFTGLGNCITKIFKSDGLRG 171
Query: 76 LWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVAN 135
L+ G + IY G+YD K L V I + + A +T A+A +V+
Sbjct: 172 LYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSW--MIAQTVT-AVAGLVSY 228
Query: 136 PTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNAAE 195
P D V+ R+ + G Y G +D + I + EG A + G N+ R + A
Sbjct: 229 PFDTVRRRMMMQSG-RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFV 286
Query: 196 LASYDQVKE 204
L YD++K+
Sbjct: 287 LVLYDEIKK 295
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 114 IPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPS-GVPRRYYGALDAYCTIVRQE 172
+ + A + AI+ P + VK+ LQ + ++Y G +D I +++
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 173 GLGALWTGLGPNIARNAIVNAAELASYDQVKEV 205
G + W G N+ R A A D+ K++
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQI 97
>pdb|3OT5|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|C Chain C, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|D Chain D, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
Length = 403
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 125 LTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPN 184
LTG +A + +PT K L AEGK P+ + A+DA T V+++ + LG N
Sbjct: 165 LTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENLGDN 224
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 90 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 145
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 90 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 145
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine
Mutant Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 33 LDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQCIYGG 92
+ A+ + K G V++ KYRG + V +A + G + + LH + G
Sbjct: 23 MRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG 82
Query: 93 LRI 95
LRI
Sbjct: 83 LRI 85
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 51 GVSVSKYRGLMGTVVT---IAREEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVG 107
G+ V + L+ T T IARE+ ++ GL + GL I YD + +VG
Sbjct: 65 GLEVGEDEILVATYATARFIAREKPNAKVFTTGEEGLIEELRLAGLEIVDYDEAEYLVVG 124
Query: 108 SDFVGDIPLYQKIFAALLTGAIAIVVANP 136
S+ + L K A L G I + NP
Sbjct: 125 SNRKINFELXTKALRACLRG-IRYIATNP 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,955,361
Number of Sequences: 62578
Number of extensions: 239355
Number of successful extensions: 657
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 12
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)